AlfalfaGEDB | Msa0852430

M. sativa cultivar zhongmu-4 / Msa0852430

KEGG: K12622
GO: GO:0000375 GO:0000377 GO:0000398 GO:0000932 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005681 GO:0005688 GO:0005737 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0008380 GO:0009987 GO:0010467 GO:0016043 GO:0016070 GO:0016071 GO:0022607 GO:0022613 GO:0022618 GO:0030532 GO:0032991 GO:0033962 GO:0034622 GO:0034641 GO:0035770 GO:0036464 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0046540 GO:0065003 GO:0070925 GO:0071011 GO:0071013 GO:0071704 GO:0071826 GO:0071840 GO:0090304 GO:0097159 GO:0097525 GO:0097526 GO:0120114 GO:1901360 GO:1901363 GO:1902494 GO:1990726 GO:1990904
PFAM: PF01423.25

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0852430	XP_003607812.1	100.000	98	0	0	1	98	1	98	2.54e-62	194

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0852430	sp\|Q9C6K5\|LSM3B_ARATH	89.796	98	9	1	1	98	1	97	9.71e-58	175

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0852430	G7JHJ2	100.000	98	0	0	1	98	1	98	1.21e-62	194

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0169610	Msa0852430	0.808813	2.575220e-50	-8.615850e-47
Msa0812160	Msa0852430	0.844191	8.808419e-59	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0852430	MtrunA17_Chr4g0043221	100.000	98	0	0	1	98	1	98	2.34e-66	194

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0852430	AT1G76860.1	89.796	98	9	1	1	98	1	97	9.87e-59	175
Msa0852430	AT1G21190.1	86.458	96	13	0	3	98	2	97	8.05e-58	173

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Find 51 sgRNAs with CRISPR-Local

Find 178 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGAGAGAAACAAAGAATG+CGG	0.659823	5_4:-43480443	None:intergenic
AAGAAGAATGGCGGGGACAG+AGG	0.529954	5_4:+43480680	Msa0852430:exon
AAGCGCAGTGAAGGAGCCTT+TGG	0.436284	5_4:+43480707	Msa0852430:CDS
AATTGAGAAAGAAGAATGGC+GGG	0.544172	5_4:+43480672	Msa0852430:exon
ACATTGGAGATCTTGAACCT+GGG	0.500499	5_4:+43481845	Msa0852430:three_prime_UTR
ACCAGAAAGACGCTTTGAGT+TGG	0.519386	5_4:-43481936	None:intergenic
ACTAGCAAACATGCATGTTG+AGG	0.616942	5_4:-43481627	None:intergenic
AGACATATGAAGAAATTGTC+AGG	0.427463	5_4:+43480961	Msa0852430:CDS
AGAGGAAGAAAGCGCAGTGA+AGG	0.494057	5_4:+43480698	Msa0852430:CDS
AGGAAGTCTACAAACTTTGA+AGG	0.454963	5_4:-43481886	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAGAGAGAAACAAAGAATG+CGG	-	chr5_4:43480446-43480465	None:intergenic	30.0%
TGGTAATTGAGAAAGAAGAA+TGG	+	chr5_4:43480668-43480687	Msa0852430:exon	30.0%
TAATTGAGAAAGAAGAATGG+CGG	+	chr5_4:43480671-43480690	Msa0852430:exon	30.0%
AGACATATGAAGAAATTGTC+AGG	+	chr5_4:43480961-43480980	Msa0852430:CDS	30.0%
GACATATGAAGAAATTGTCA+GGG	+	chr5_4:43480962-43480981	Msa0852430:CDS	30.0%
ACTCTGATTTAAGAACTATG+AGG	+	chr5_4:43481140-43481159	Msa0852430:intron	30.0%
AGGTCAATAGTTGAAAGAAA+AGG	-	chr5_4:43481244-43481263	None:intergenic	30.0%
ATCTAATATCATAAGGAACG+AGG	-	chr5_4:43481604-43481623	None:intergenic	30.0%
ATGAACAAGGGTTATACTTA+TGG	+	chr5_4:43481711-43481730	Msa0852430:three_prime_UTR	30.0%
ATCATTTGCGTTTAAGCTTA+TGG	-	chr5_4:43481769-43481788	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr5_4	gene	43480387	43481967	43480387	ID=Msa0852430;Name=Msa0852430
chr5_4	mRNA	43480387	43481967	43480387	ID=Msa0852430-mRNA-1;Parent=Msa0852430;Name=Msa0852430-mRNA-1;_AED=0.36;_eAED=0.36;_QI=161\|1\|1\|1\|0.66\|0.5\|4\|442\|98
chr5_4	exon	43480387	43480504	43480387	ID=Msa0852430-mRNA-1:exon:13739;Parent=Msa0852430-mRNA-1
chr5_4	exon	43480644	43480806	43480644	ID=Msa0852430-mRNA-1:exon:13740;Parent=Msa0852430-mRNA-1
chr5_4	exon	43480888	43480983	43480888	ID=Msa0852430-mRNA-1:exon:13741;Parent=Msa0852430-mRNA-1
chr5_4	exon	43481445	43481967	43481445	ID=Msa0852430-mRNA-1:exon:13742;Parent=Msa0852430-mRNA-1
chr5_4	five_prime_UTR	43480387	43480504	43480387	ID=Msa0852430-mRNA-1:five_prime_utr;Parent=Msa0852430-mRNA-1
chr5_4	five_prime_UTR	43480644	43480686	43480644	ID=Msa0852430-mRNA-1:five_prime_utr;Parent=Msa0852430-mRNA-1
chr5_4	CDS	43480687	43480806	43480687	ID=Msa0852430-mRNA-1:cds;Parent=Msa0852430-mRNA-1
chr5_4	CDS	43480888	43480983	43480888	ID=Msa0852430-mRNA-1:cds;Parent=Msa0852430-mRNA-1
chr5_4	CDS	43481445	43481525	43481445	ID=Msa0852430-mRNA-1:cds;Parent=Msa0852430-mRNA-1
chr5_4	three_prime_UTR	43481526	43481967	43481526	ID=Msa0852430-mRNA-1:three_prime_utr;Parent=Msa0852430-mRNA-1

Gene Sequence	>Msa0852430 ATGGCGGGGACAGAGGAAGAAAGCGCAGTGAAGGAGCCTTTGGATCTCATAAGGCTGAGTCTCGACGAACGTATCTACGTTAAACTCCGTTCTGATAGAGAGCTTCGTGGAAAACTTCATGCTTATGATCAACATCTTAATATGATTCTTGGTGATGTTGAAGAAATTGTTACTACTGTTGAAATTGATGATGAGACATATGAAGAAATTGTCAGGACTACAAAGCGGACAGTTCCGTTCCTTTTTGTTAGGGGAGATGGCGTGATATTGGTTTCTCCACCACTGAGGACTGCATAA
Protein sequence	>Msa0852430 MAGTEEESAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEIVTTVEIDDETYEEIVRTTKRTVPFLFVRGDGVILVSPPLRTA*