AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0854180

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0854180 MtrunA17_Chr5g0431441 91.667 324 27 0 1 324 147 470 0.0 619
Msa0854180 MtrunA17_Chr5g0432731 55.369 298 130 2 26 321 2 298 2.51e-121 350
Msa0854180 MtrunA17_Chr3g0106251 56.164 292 124 3 29 320 7 294 4.70e-117 340
Msa0854180 MtrunA17_Chr3g0106231 54.362 298 132 2 27 322 159 454 3.27e-115 341
Msa0854180 MtrunA17_Chr5g0431361 47.352 321 161 4 1 319 139 453 1.12e-99 301
Msa0854180 MtrunA17_Chr5g0431431 52.239 268 111 4 12 277 95 347 9.26e-97 290
Msa0854180 MtrunA17_Chr5g0431421 44.099 322 168 4 1 320 138 449 2.33e-94 287
Msa0854180 MtrunA17_Chr5g0431371 44.308 325 161 5 1 319 138 448 3.32e-94 286
Msa0854180 MtrunA17_Chr5g0431401 43.077 325 165 5 1 319 138 448 3.51e-92 281
Msa0854180 MtrunA17_Chr6g0454291 33.819 343 189 11 2 320 149 477 3.05e-48 168
Msa0854180 MtrunA17_Chr8g0380531 36.162 271 155 6 61 319 193 457 2.83e-47 165
Msa0854180 MtrunA17_Chr8g0377941 36.842 247 149 3 76 320 221 462 4.00e-47 165
Msa0854180 MtrunA17_Chr8g0377921 34.221 263 154 4 73 320 206 464 7.93e-47 164
Msa0854180 MtrunA17_Chr3g0112771 31.915 329 198 7 3 320 139 452 1.68e-46 163
Msa0854180 MtrunA17_Chr6g0452771 33.430 344 189 12 2 320 152 480 2.93e-46 163
Msa0854180 MtrunA17_Chr6g0454401 32.070 343 195 11 2 320 153 481 3.52e-46 163
Msa0854180 MtrunA17_Chr6g0454151 32.845 341 193 12 2 320 152 478 3.67e-46 162
Msa0854180 MtrunA17_Chr6g0454361 31.594 345 193 11 2 320 154 481 1.52e-45 161
Msa0854180 MtrunA17_Chr6g0454201 32.738 336 184 13 11 320 162 481 1.99e-45 160
Msa0854180 MtrunA17_Chr6g0464861 33.574 277 154 6 60 319 190 453 8.90e-45 158
Msa0854180 MtrunA17_Chr6g0464881 33.824 272 162 6 60 320 191 455 1.81e-44 157
Msa0854180 MtrunA17_Chr6g0454341 31.700 347 192 11 2 320 149 478 2.05e-44 158
Msa0854180 MtrunA17_Chr7g0250001 33.813 278 158 8 59 321 183 449 3.01e-44 157
Msa0854180 MtrunA17_Chr7g0217881 32.551 341 178 10 2 320 152 462 3.36e-44 157
Msa0854180 MtrunA17_Chr3g0078841 31.871 342 198 10 2 320 149 478 4.74e-44 157
Msa0854180 MtrunA17_Chr5g0414331 34.815 270 155 8 60 316 189 450 4.93e-44 157
Msa0854180 MtrunA17_Chr6g0464871 33.333 273 162 7 59 319 202 466 6.19e-44 156
Msa0854180 MtrunA17_Chr7g0249981 35.252 278 154 8 59 321 202 468 6.40e-44 157
Msa0854180 MtrunA17_Chr1g0207981 34.082 267 150 6 70 320 217 473 6.97e-44 156
Msa0854180 MtrunA17_Chr8g0359821 30.792 341 201 10 2 320 151 478 9.78e-44 156
Msa0854180 MtrunA17_Chr6g0464921 33.210 271 164 6 60 319 191 455 1.21e-43 155
Msa0854180 MtrunA17_Chr6g0454121 31.805 349 190 13 1 320 150 479 1.34e-43 156
Msa0854180 MtrunA17_Chr6g0454331 33.974 312 169 10 30 320 184 479 1.60e-43 155
Msa0854180 MtrunA17_Chr6g0454191 32.070 343 194 12 2 320 154 481 2.29e-43 155
Msa0854180 MtrunA17_Chr6g0454261 31.329 316 182 8 25 320 180 480 5.16e-43 154
Msa0854180 MtrunA17_Chr6g0453951 31.304 345 195 10 2 320 199 527 5.64e-43 155
Msa0854180 MtrunA17_Chr6g0454211 32.653 343 193 10 2 320 439 767 6.78e-43 157
Msa0854180 MtrunA17_Chr6g0454211 31.019 216 109 7 25 229 50 236 3.05e-21 94.7
Msa0854180 MtrunA17_Chr6g0464841 33.210 271 163 6 60 319 191 454 1.27e-42 152
Msa0854180 MtrunA17_Chr6g0454141 30.233 344 202 9 1 320 151 480 1.29e-42 153
Msa0854180 MtrunA17_Chr2g0278711 31.105 344 201 10 2 320 145 477 3.67e-42 152
Msa0854180 MtrunA17_Chr7g0232411 35.878 262 132 8 76 312 208 458 5.40e-42 151
Msa0854180 MtrunA17_Chr6g0454181 32.267 344 192 13 2 320 153 480 8.15e-42 151
Msa0854180 MtrunA17_Chr6g0454131 31.792 346 194 12 1 320 150 479 8.45e-42 151
Msa0854180 MtrunA17_Chr3g0118721 33.585 265 153 6 72 321 35 291 1.63e-41 146
Msa0854180 MtrunA17_Chr5g0414321 33.094 278 165 8 60 324 187 456 3.09e-41 149
Msa0854180 MtrunA17_Chr3g0118711 30.247 324 194 8 17 321 172 482 5.13e-41 149
Msa0854180 MtrunA17_Chr6g0454301 30.347 346 198 10 2 320 402 731 5.49e-41 152
Msa0854180 MtrunA17_Chr6g0454301 36.638 232 122 6 100 316 5 226 1.05e-37 142
Msa0854180 MtrunA17_Chr4g0053321 29.969 327 203 8 11 320 163 480 5.49e-41 149
Msa0854180 MtrunA17_Chr7g0249931 32.472 271 171 6 59 321 219 485 9.11e-41 148
Msa0854180 MtrunA17_Chr8g0336331 30.347 346 198 11 2 320 148 477 9.86e-41 148
Msa0854180 MtrunA17_Chr5g0423981 32.459 305 171 11 36 320 156 445 1.17e-40 147
Msa0854180 MtrunA17_Chr7g0232391 34.276 283 144 8 52 308 188 454 2.01e-40 147
Msa0854180 MtrunA17_Chr3g0118691 31.833 311 182 8 30 321 185 484 2.72e-40 147
Msa0854180 MtrunA17_Chr7g0232311 33.981 309 151 11 36 312 169 456 3.07e-40 146
Msa0854180 MtrunA17_Chr3g0118771 30.814 344 202 10 2 321 159 490 3.39e-40 147
Msa0854180 MtrunA17_Chr5g0448521 31.250 288 160 6 64 321 190 469 5.01e-40 146
Msa0854180 MtrunA17_Chr3g0112761 28.875 329 211 5 3 320 134 450 7.75e-40 145
Msa0854180 MtrunA17_Chr7g0249961 36.842 228 131 6 103 321 38 261 1.03e-39 140
Msa0854180 MtrunA17_Chr6g0454321 30.303 330 189 11 2 305 149 463 1.76e-39 147
Msa0854180 MtrunA17_Chr8g0339601 32.209 326 162 10 11 307 23 318 1.92e-39 141
Msa0854180 MtrunA17_Chr6g0454351 30.612 343 183 11 2 320 154 465 1.94e-39 144
Msa0854180 MtrunA17_Chr1g0207951 33.829 269 158 5 62 319 849 1108 2.00e-39 148
Msa0854180 MtrunA17_Chr1g0207951 31.818 264 169 6 62 319 312 570 1.85e-34 133
Msa0854180 MtrunA17_Chr6g0454271 31.757 296 163 9 53 320 3 287 2.93e-39 140
Msa0854180 MtrunA17_Chr4g0053501 32.117 274 157 7 64 320 204 465 3.11e-39 144
Msa0854180 MtrunA17_Chr8g0347281 36.187 257 127 8 80 312 222 465 4.47e-39 144
Msa0854180 MtrunA17_Chr7g0265051 33.209 268 155 7 76 320 219 485 5.73e-39 144
Msa0854180 MtrunA17_Chr3g0118701 30.225 311 187 8 30 321 185 484 6.55e-39 143
Msa0854180 MtrunA17_Chr8g0339451 31.737 334 169 10 11 315 156 459 9.37e-39 142
Msa0854180 MtrunA17_Chr5g0401721 30.189 265 164 6 73 322 215 473 1.01e-38 142
Msa0854180 MtrunA17_Chr3g0121991 33.333 270 144 7 83 319 279 545 1.08e-38 144
Msa0854180 MtrunA17_Chr8g0347271 35.448 268 138 8 64 308 207 462 1.42e-38 142
Msa0854180 MtrunA17_Chr6g0453961 31.014 345 197 12 2 320 161 490 2.29e-38 142
Msa0854180 MtrunA17_Chr7g0265101 33.210 271 152 8 76 320 220 487 2.84e-38 142
Msa0854180 MtrunA17_Chr4g0032331 35.271 258 141 8 76 320 206 450 5.78e-38 140
Msa0854180 MtrunA17_Chr7g0243871 32.955 264 152 6 72 316 212 469 7.02e-38 140
Msa0854180 MtrunA17_Chr8g0336691 31.230 317 177 10 24 312 1069 1372 8.17e-38 143
Msa0854180 MtrunA17_Chr8g0336691 30.464 302 174 7 36 312 176 466 3.11e-35 135
Msa0854180 MtrunA17_Chr8g0336691 31.786 280 171 7 36 312 643 905 1.81e-33 130
Msa0854180 MtrunA17_Chr8g0373301 33.861 316 167 10 22 308 153 455 9.47e-38 140
Msa0854180 MtrunA17_Chr8g0339461 32.812 320 166 11 36 320 170 475 1.89e-37 139
Msa0854180 MtrunA17_Chr1g0153451 32.667 300 165 8 37 312 170 456 1.93e-37 139
Msa0854180 MtrunA17_Chr8g0336731 31.475 305 173 8 36 316 195 487 1.96e-37 139
Msa0854180 MtrunA17_Chr8g0335141 33.206 262 143 7 83 323 221 471 2.16e-37 139
Msa0854180 MtrunA17_Chr8g0355011 29.674 337 169 9 2 320 76 362 2.18e-37 137
Msa0854180 MtrunA17_Chr8g0335161 33.209 268 141 7 80 323 216 469 2.55e-37 139
Msa0854180 MtrunA17_Chr8g0336651 32.667 300 168 7 36 312 169 457 3.20e-37 141
Msa0854180 MtrunA17_Chr8g0336651 31.579 304 170 8 36 312 944 1236 4.54e-36 138
Msa0854180 MtrunA17_Chr8g0336651 32.937 252 146 6 64 312 536 767 2.63e-33 130
Msa0854180 MtrunA17_Chr4g0014061 34.016 244 129 6 100 316 231 469 3.50e-37 139
Msa0854180 MtrunA17_Chr8g0336741 32.542 295 165 7 36 307 176 459 5.17e-37 138
Msa0854180 MtrunA17_Chr6g0454221 34.167 240 132 6 100 323 5 234 7.18e-37 134
Msa0854180 MtrunA17_Chr8g0361371 34.016 244 127 6 98 316 233 467 8.50e-37 137
Msa0854180 MtrunA17_Chr7g0232341 33.333 264 137 8 76 312 208 459 9.81e-37 137
Msa0854180 MtrunA17_Chr5g0412111 29.885 348 204 11 1 319 125 461 1.17e-36 137
Msa0854180 MtrunA17_Chr5g0429711 39.167 240 121 12 83 308 222 450 1.26e-36 137
Msa0854180 MtrunA17_Chr3g0122001 33.716 261 143 8 82 319 699 952 2.37e-36 139
Msa0854180 MtrunA17_Chr3g0122001 33.716 261 144 7 82 319 219 473 3.95e-36 138
Msa0854180 MtrunA17_Chr8g0365811 32.155 283 166 6 62 324 686 962 2.50e-36 139
Msa0854180 MtrunA17_Chr8g0365811 33.096 281 166 6 62 324 204 480 2.44e-31 124
Msa0854180 MtrunA17_Chr8g0339631 35.146 239 121 7 100 315 237 464 2.84e-36 136
Msa0854180 MtrunA17_Chr4g0050341 29.885 348 193 12 2 316 158 487 3.15e-36 136
Msa0854180 MtrunA17_Chr7g0218831 35.039 254 135 7 69 316 207 436 6.60e-36 134
Msa0854180 MtrunA17_Chr1g0159551 35.849 212 117 4 125 319 250 459 7.68e-36 134
Msa0854180 MtrunA17_Chr7g0275511 33.333 267 143 8 71 312 212 468 1.01e-35 134
Msa0854180 MtrunA17_Chr7g0243771 33.708 267 146 7 71 312 208 468 1.66e-35 134
Msa0854180 MtrunA17_Chr7g0243631 33.582 268 149 8 71 312 215 479 2.49e-35 134
Msa0854180 MtrunA17_Chr7g0232331 34.615 260 131 9 76 308 208 455 2.50e-35 133
Msa0854180 MtrunA17_Chr3g0098111 31.047 277 163 6 62 319 202 469 2.74e-35 133
Msa0854180 MtrunA17_Chr5g0412101 29.834 362 189 11 1 319 131 470 3.03e-35 133
Msa0854180 MtrunA17_Chr7g0243801 33.459 266 148 6 71 312 209 469 4.04e-35 133
Msa0854180 MtrunA17_Chr1g0207831 33.088 272 164 8 59 319 199 463 5.96e-35 132
Msa0854180 MtrunA17_Chr8g0374941 28.866 291 178 7 57 319 1128 1417 6.76e-35 134
Msa0854180 MtrunA17_Chr8g0374941 27.737 274 169 7 57 302 190 462 8.40e-29 117
Msa0854180 MtrunA17_Chr8g0374941 29.644 253 149 7 70 294 668 919 1.19e-26 110
Msa0854180 MtrunA17_Chr3g0118671 29.032 310 190 8 30 320 176 474 6.79e-35 132
Msa0854180 MtrunA17_Chr1g0207971 31.633 294 180 7 39 319 168 453 7.13e-35 132
Msa0854180 MtrunA17_Chr1g0179901 32.028 281 155 7 71 321 221 495 7.17e-35 132
Msa0854180 MtrunA17_Chr4g0011051 32.584 267 151 8 80 320 225 488 8.32e-35 132
Msa0854180 MtrunA17_Chr7g0218841 34.646 254 136 7 69 316 208 437 1.44e-34 130
Msa0854180 MtrunA17_Chr1g0207931 31.179 263 153 5 76 319 244 497 1.56e-34 132
Msa0854180 MtrunA17_Chr2g0302991 31.660 259 146 8 80 316 210 459 1.91e-34 130
Msa0854180 MtrunA17_Chr7g0235051 30.990 313 189 10 25 312 136 446 2.07e-34 130
Msa0854180 MtrunA17_Chr4g0044511 30.990 313 180 10 33 319 202 504 3.38e-34 130
Msa0854180 MtrunA17_Chr4g0066151 33.333 219 120 5 126 319 262 479 4.33e-34 130
Msa0854180 MtrunA17_Chr3g0092641 28.198 344 207 12 2 320 150 478 4.62e-34 130
Msa0854180 MtrunA17_Chr2g0302961 30.224 268 156 8 71 316 204 462 4.99e-34 129
Msa0854180 MtrunA17_Chr7g0265151 30.483 269 158 7 80 321 219 485 5.03e-34 130
Msa0854180 MtrunA17_Chr7g0243681 30.483 269 165 5 71 319 213 479 6.50e-34 130
Msa0854180 MtrunA17_Chr6g0486251 30.830 253 143 6 84 315 219 460 7.14e-34 129
Msa0854180 MtrunA17_Chr6g0486201 30.830 253 143 6 84 315 219 460 7.14e-34 129
Msa0854180 MtrunA17_Chr8g0366391 32.950 261 141 8 80 316 224 474 7.75e-34 129
Msa0854180 MtrunA17_Chr5g0412131 28.814 354 202 11 1 319 131 469 7.89e-34 129
Msa0854180 MtrunA17_Chr6g0454171 31.343 268 140 9 71 320 69 310 9.18e-34 126
Msa0854180 MtrunA17_Chr6g0459311 31.008 258 144 6 80 315 222 467 1.01e-33 129
Msa0854180 MtrunA17_Chr1g0207861 30.686 277 164 5 62 319 201 468 1.01e-33 129
Msa0854180 MtrunA17_Chr1g0173121 35.377 212 118 4 125 319 253 462 1.18e-33 129
Msa0854180 MtrunA17_Chr7g0232401 31.864 295 169 8 36 308 172 456 1.29e-33 129
Msa0854180 MtrunA17_Chr7g0243781 30.651 261 155 6 80 319 220 475 2.07e-33 128
Msa0854180 MtrunA17_Chr8g0374901 32.377 244 137 6 103 319 236 478 2.18e-33 128
Msa0854180 MtrunA17_Chr4g0066201 33.488 215 121 4 128 321 263 476 4.94e-33 127
Msa0854180 MtrunA17_Chr5g0426431 28.406 345 204 13 2 320 151 478 5.54e-33 127
Msa0854180 MtrunA17_Chr4g0066171 33.333 228 125 6 113 319 255 476 5.80e-33 127
Msa0854180 MtrunA17_Chr5g0401851 31.461 267 156 5 71 312 212 476 6.00e-33 127
Msa0854180 MtrunA17_Chr6g0462571 29.268 328 204 9 3 315 143 457 6.18e-33 127
Msa0854180 MtrunA17_Chr6g0449931 33.840 263 135 9 73 308 206 456 7.02e-33 127
Msa0854180 MtrunA17_Chr5g0442491 30.769 273 147 7 67 308 202 463 8.52e-33 126
Msa0854180 MtrunA17_Chr8g0339441 35.681 213 106 6 129 315 218 425 1.09e-32 125
Msa0854180 MtrunA17_Chr8g0355221 31.387 274 154 7 71 316 216 483 1.12e-32 126
Msa0854180 MtrunA17_Chr5g0442581 29.825 285 156 8 70 321 205 478 1.22e-32 127
Msa0854180 MtrunA17_Chr3g0079731 34.454 238 123 7 99 312 245 473 1.25e-32 126
Msa0854180 MtrunA17_Chr7g0243931 31.418 261 152 6 77 312 225 483 1.26e-32 126
Msa0854180 MtrunA17_Chr8g0382021 34.247 219 122 3 121 319 272 488 1.89e-32 125
Msa0854180 MtrunA17_Chr8g0334831 31.621 253 130 6 98 316 232 475 2.31e-32 125
Msa0854180 MtrunA17_Chr4g0044501 28.963 328 211 9 13 321 156 480 2.91e-32 125
Msa0854180 MtrunA17_Chr5g0419771 33.028 218 123 4 126 321 298 514 3.10e-32 125
Msa0854180 MtrunA17_Chr4g0066221 31.984 247 140 6 100 319 235 480 3.15e-32 125
Msa0854180 MtrunA17_Chr7g0218811 35.385 195 113 4 129 317 260 447 3.79e-32 124
Msa0854180 MtrunA17_Chr8g0350881 29.856 278 166 7 70 319 204 480 4.52e-32 124
Msa0854180 MtrunA17_Chr5g0426401 28.296 311 190 10 30 320 14 311 6.81e-32 121
Msa0854180 MtrunA17_Chr5g0429681 34.286 245 131 7 83 308 255 488 1.06e-31 124
Msa0854180 MtrunA17_Chr2g0294931 33.333 243 135 6 100 316 237 478 1.42e-31 123
Msa0854180 MtrunA17_Chr7g0218821 33.468 248 136 6 69 310 218 442 1.80e-31 122
Msa0854180 MtrunA17_Chr7g0265041 29.137 278 164 6 72 321 218 490 1.83e-31 123
Msa0854180 MtrunA17_Chr7g0243951 29.885 261 155 6 77 312 219 476 1.97e-31 123
Msa0854180 MtrunA17_Chr4g0060511 30.350 257 154 6 80 312 225 480 2.15e-31 123
Msa0854180 MtrunA17_Chr4g0042891 32.340 235 130 9 99 316 240 462 2.35e-31 122
Msa0854180 MtrunA17_Chr1g0153461 32.701 211 110 5 127 312 2 205 2.38e-31 117
Msa0854180 MtrunA17_Chr8g0370941 30.769 325 164 12 36 312 170 481 2.74e-31 122
Msa0854180 MtrunA17_Chr7g0265111 33.621 232 130 7 110 320 288 516 3.27e-31 122
Msa0854180 MtrunA17_Chr1g0161351 30.325 277 165 6 62 319 230 497 3.28e-31 122
Msa0854180 MtrunA17_Chr4g0066281 33.790 219 115 5 126 319 253 466 3.41e-31 122
Msa0854180 MtrunA17_Chr8g0374971 30.738 244 141 6 103 319 238 480 3.73e-31 122
Msa0854180 MtrunA17_Chr3g0118661 29.126 309 192 8 30 321 183 481 4.29e-31 122
Msa0854180 MtrunA17_Chr5g0442541 31.111 270 144 7 70 308 196 454 4.36e-31 121
Msa0854180 MtrunA17_Chr5g0442561 28.826 281 156 8 70 320 203 469 6.46e-31 121
Msa0854180 MtrunA17_Chr6g0463891 30.798 263 160 5 71 312 216 477 1.00e-30 121
Msa0854180 MtrunA17_Chr7g0275681 28.435 313 175 8 34 320 192 481 1.15e-30 120
Msa0854180 MtrunA17_Chr4g0044521 30.903 288 158 10 55 316 191 463 1.26e-30 120
Msa0854180 MtrunA17_Chr5g0442521 29.861 288 152 9 70 321 204 477 1.52e-30 120
Msa0854180 MtrunA17_Chr6g0462541 28.182 330 200 8 3 313 146 457 1.60e-30 120
Msa0854180 MtrunA17_Chr5g0442601 28.470 281 157 6 70 320 606 872 1.72e-30 122
Msa0854180 MtrunA17_Chr5g0442601 30.811 185 102 3 92 254 156 336 1.99e-20 92.0
Msa0854180 MtrunA17_Chr4g0066261 32.035 231 127 6 113 319 257 481 3.69e-30 119
Msa0854180 MtrunA17_Chr5g0403641 28.516 256 156 4 82 312 242 495 4.18e-30 119
Msa0854180 MtrunA17_Chr8g0334851 29.677 310 169 10 36 315 172 462 4.86e-30 119
Msa0854180 MtrunA17_Chr7g0243711 33.333 210 114 5 125 312 104 309 6.72e-30 116
Msa0854180 MtrunA17_Chr3g0118751 29.236 301 174 7 30 321 176 446 8.60e-30 118
Msa0854180 MtrunA17_Chr6g0462551 30.189 265 155 6 70 315 207 460 1.07e-29 118
Msa0854180 MtrunA17_Chr7g0218311 33.040 227 127 5 114 316 255 480 2.31e-29 117
Msa0854180 MtrunA17_Chr6g0462531 28.963 328 191 11 3 308 146 453 3.00e-29 116
Msa0854180 MtrunA17_Chr5g0442511 29.740 269 149 6 70 308 224 482 3.29e-29 117
Msa0854180 MtrunA17_Chr5g0416741 29.851 268 144 7 77 312 221 476 3.71e-29 116
Msa0854180 MtrunA17_Chr5g0428081 34.061 229 123 7 114 316 250 476 5.27e-29 116
Msa0854180 MtrunA17_Chr7g0243851 30.651 261 154 6 77 312 177 435 5.61e-29 115
Msa0854180 MtrunA17_Chr4g0066131 31.481 216 122 5 126 316 257 471 7.20e-29 115
Msa0854180 MtrunA17_Chr1g0165701 30.882 272 155 9 71 316 216 480 7.91e-29 115
Msa0854180 MtrunA17_Chr5g0419761 30.400 250 139 6 100 320 243 486 1.03e-28 115
Msa0854180 MtrunA17_Chr6g0454371 33.520 179 102 4 151 320 1 171 1.26e-28 108
Msa0854180 MtrunA17_Chr8g0334861 31.801 261 137 9 76 308 205 452 2.10e-28 114
Msa0854180 MtrunA17_Chr7g0265141 31.628 215 125 5 123 316 269 482 3.14e-28 114
Msa0854180 MtrunA17_Chr6g0463861 30.275 218 126 3 127 319 257 473 3.88e-28 114
Msa0854180 MtrunA17_Chr6g0463851 31.050 219 125 4 126 319 265 482 5.16e-28 113
Msa0854180 MtrunA17_Chr7g0218791 32.794 247 144 8 70 310 208 438 5.66e-28 112
Msa0854180 MtrunA17_Chr6g0454251 35.160 219 117 7 30 229 182 394 8.34e-28 111
Msa0854180 MtrunA17_Chr5g0410941 31.963 219 124 5 125 319 272 489 3.84e-27 111
Msa0854180 MtrunA17_Chr7g0243861 30.418 263 152 6 77 312 222 480 4.38e-27 110
Msa0854180 MtrunA17_Chr5g0440421 29.588 267 160 8 80 321 232 495 5.30e-27 110
Msa0854180 MtrunA17_Chr5g0409591 29.688 256 139 7 68 286 202 453 5.39e-27 110
Msa0854180 MtrunA17_Chr7g0243911 36.170 188 98 5 127 294 20 205 5.40e-27 105
Msa0854180 MtrunA17_Chr2g0294941 31.441 229 130 5 100 302 135 362 1.32e-26 108
Msa0854180 MtrunA17_Chr4g0072771 25.552 317 181 9 23 316 178 462 1.36e-26 109
Msa0854180 MtrunA17_Chr5g0393591 33.333 204 104 6 127 319 253 435 1.47e-26 108
Msa0854180 MtrunA17_Chr6g0462521 31.599 269 147 8 61 308 187 439 1.64e-26 108
Msa0854180 MtrunA17_Chr8g0374931 31.858 226 127 5 126 325 265 489 2.10e-26 108
Msa0854180 MtrunA17_Chr2g0294921 28.472 288 175 7 56 316 344 627 3.89e-26 108
Msa0854180 MtrunA17_Chr4g0042931 28.470 281 162 10 62 316 193 460 5.01e-26 107
Msa0854180 MtrunA17_Chr6g0482061 27.839 273 168 8 61 313 210 473 1.03e-25 107
Msa0854180 MtrunA17_Chr8g0336261 37.324 142 73 3 151 283 1 135 1.37e-25 99.8
Msa0854180 MtrunA17_Chr8g0369341 32.245 245 136 9 89 316 234 465 3.37e-25 105
Msa0854180 MtrunA17_Chr8g0361411 28.676 272 161 8 65 316 192 450 5.38e-25 104
Msa0854180 MtrunA17_Chr2g0329111 26.692 266 163 8 76 316 218 476 8.60e-25 104
Msa0854180 MtrunA17_Chr8g0336251 32.051 234 140 6 73 293 212 439 9.17e-25 103
Msa0854180 MtrunA17_Chr8g0336321 32.051 234 140 6 73 293 212 439 1.18e-24 103
Msa0854180 MtrunA17_Chr7g0241781 30.568 229 145 7 73 297 189 407 1.57e-24 103
Msa0854180 MtrunA17_Chr5g0427571 30.962 239 140 7 73 293 42 273 3.39e-24 100
Msa0854180 MtrunA17_Chr7g0243761 30.242 248 143 8 71 289 213 459 4.74e-24 102
Msa0854180 MtrunA17_Chr2g0307961 26.756 299 178 10 35 320 199 469 6.54e-24 101
Msa0854180 MtrunA17_Chr8g0367221 27.798 277 175 9 35 294 1454 1722 8.60e-24 102
Msa0854180 MtrunA17_Chr8g0367221 33.333 156 90 5 131 274 271 424 2.99e-19 89.0
Msa0854180 MtrunA17_Chr8g0367221 32.704 159 93 5 131 277 1058 1214 1.46e-18 87.0
Msa0854180 MtrunA17_Chr2g0278721 28.723 282 174 9 35 300 177 447 9.51e-24 102
Msa0854180 MtrunA17_Chr2g0278721 28.251 223 139 7 83 294 740 952 2.40e-19 89.0
Msa0854180 MtrunA17_Chr7g0243611 28.216 241 149 6 54 270 56 296 9.89e-23 95.9
Msa0854180 MtrunA17_Chr7g0243811 33.161 193 99 5 72 245 187 368 9.99e-23 97.4
Msa0854180 MtrunA17_Chr4g0072761 25.000 296 189 9 25 308 167 441 1.35e-22 97.8
Msa0854180 MtrunA17_Chr5g0420801 32.683 205 117 6 127 316 257 455 1.37e-22 97.8
Msa0854180 MtrunA17_Chr7g0231631 27.481 262 144 8 77 312 11 252 2.39e-22 94.7
Msa0854180 MtrunA17_Chr4g0044481 29.958 237 141 6 33 251 167 396 2.68e-22 96.7
Msa0854180 MtrunA17_Chr2g0278741 27.500 280 180 9 35 300 259 529 8.46e-22 95.9
Msa0854180 MtrunA17_Chr7g0241801 28.821 229 149 7 73 297 189 407 1.81e-21 94.4
Msa0854180 MtrunA17_Chr3g0079711 32.597 181 89 5 155 308 3 177 2.44e-21 89.7
Msa0854180 MtrunA17_Chr7g0232351 34.637 179 84 5 76 229 208 378 2.57e-21 93.2
Msa0854180 MtrunA17_Chr1g0207881 28.846 208 121 4 120 319 196 384 3.97e-21 93.2
Msa0854180 MtrunA17_Chr2g0302851 26.207 290 172 10 35 300 172 443 8.42e-21 92.8
Msa0854180 MtrunA17_Chr6g0454231 28.185 259 137 10 70 320 2 219 9.48e-21 92.4
Msa0854180 MtrunA17_Chr4g0069611 27.966 236 157 6 73 300 212 442 9.66e-21 92.4
Msa0854180 MtrunA17_Chr5g0416821 24.857 350 179 11 25 312 139 466 2.34e-20 91.3
Msa0854180 MtrunA17_Chr5g0448551 34.545 165 91 4 129 279 260 421 1.08e-19 89.4
Msa0854180 MtrunA17_Chr3g0092031 30.726 179 112 5 130 300 5 179 3.40e-19 84.3
Msa0854180 MtrunA17_Chr4g0039881 26.786 280 183 10 35 300 148 419 1.85e-18 85.5
Msa0854180 MtrunA17_Chr1g0196851 26.316 228 144 4 70 283 245 462 1.93e-18 85.9
Msa0854180 MtrunA17_Chr6g0466831 27.350 234 155 8 76 300 218 445 2.65e-18 85.5
Msa0854180 MtrunA17_Chr8g0337381 34.677 124 74 4 190 312 1 118 3.08e-18 79.7
Msa0854180 MtrunA17_Chr6g0466841 27.778 234 154 8 76 300 218 445 4.24e-18 84.7
Msa0854180 MtrunA17_Chr4g0066141 31.447 159 91 5 177 319 195 351 6.70e-18 83.6
Msa0854180 MtrunA17_Chr8g0357361 27.391 230 145 6 44 251 19 248 1.03e-17 81.6
Msa0854180 MtrunA17_Chr6g0464091 29.258 229 143 8 83 300 232 452 2.88e-17 82.4
Msa0854180 MtrunA17_Chr4g0029131 28.102 274 162 10 35 289 172 429 9.04e-17 81.3
Msa0854180 MtrunA17_Chr4g0040711 24.268 239 161 4 70 297 207 436 1.16e-15 77.4
Msa0854180 MtrunA17_Chr4g0029151 28.017 232 141 5 67 283 210 430 5.68e-15 75.5
Msa0854180 MtrunA17_Chr6g0453981 32.984 191 103 7 2 175 22 204 1.59e-14 72.0
Msa0854180 MtrunA17_Chr4g0040691 24.691 243 155 5 70 297 207 436 5.92e-14 72.4
Msa0854180 MtrunA17_Chr2g0283041 24.299 214 141 4 76 278 212 415 2.14e-13 70.5
Msa0854180 MtrunA17_Chr2g0319731 27.046 281 174 9 37 297 184 453 9.13e-13 68.6
Msa0854180 MtrunA17_Chr8g0334841 42.857 91 36 3 91 176 56 135 9.79e-12 62.8
Msa0854180 MtrunA17_Chr2g0319801 27.155 232 147 6 78 297 215 436 1.41e-11 65.1
Msa0854180 MtrunA17_Chr6g0453941 30.220 182 107 6 11 177 83 259 3.40e-11 62.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0854180 AT2G30150.1 48.598 321 154 6 2 319 124 436 6.34e-98 296
Msa0854180 AT2G30150.2 48.598 321 154 6 2 319 140 452 1.14e-97 296
Msa0854180 AT2G30140.1 47.678 323 154 6 1 319 140 451 6.95e-92 281
Msa0854180 AT2G30140.2 47.678 323 153 6 1 319 140 450 1.60e-91 280
Msa0854180 AT2G28080.1 32.615 325 186 9 11 320 166 472 1.89e-50 174
Msa0854180 AT2G36970.1 31.307 329 186 9 11 319 162 470 7.61e-50 173
Msa0854180 AT2G31750.1 35.664 286 162 7 49 320 178 455 2.28e-49 171
Msa0854180 AT2G31750.2 35.172 290 166 7 49 324 178 459 4.26e-49 171
Msa0854180 AT5G38040.1 32.792 308 173 7 27 319 161 449 1.70e-46 163
Msa0854180 AT4G01070.1 33.223 301 166 9 36 312 171 460 5.78e-45 160
Msa0854180 AT2G43840.2 34.875 281 147 8 60 319 181 446 5.79e-45 159
Msa0854180 AT2G43840.1 34.875 281 147 8 60 319 181 446 8.69e-45 159
Msa0854180 AT2G43820.1 34.799 273 158 7 60 319 181 446 2.42e-43 155
Msa0854180 AT1G05680.1 37.555 229 128 4 99 316 225 449 2.63e-43 155
Msa0854180 AT5G38010.1 34.241 257 147 4 73 319 209 453 2.74e-43 155
Msa0854180 AT3G46660.1 37.391 230 120 5 98 316 236 452 5.57e-43 154
Msa0854180 AT1G05675.1 36.957 230 130 4 99 317 225 450 8.14e-43 154
Msa0854180 AT3G46670.1 32.881 295 170 9 34 316 167 445 1.13e-42 153
Msa0854180 AT5G59580.1 31.801 261 154 5 70 319 200 447 6.27e-42 151
Msa0854180 AT1G01420.2 32.343 303 165 8 36 312 174 462 8.18e-42 151
Msa0854180 AT1G01420.1 32.343 303 165 8 36 312 171 459 8.74e-42 151
Msa0854180 AT5G05900.1 33.648 318 188 9 11 321 148 449 2.43e-41 149
Msa0854180 AT2G31790.1 30.746 335 203 9 1 317 131 454 4.63e-41 149
Msa0854180 AT5G59590.1 31.538 260 154 4 71 319 203 449 1.16e-40 147
Msa0854180 AT3G46680.1 31.852 270 159 6 58 316 191 446 1.54e-40 147
Msa0854180 AT2G29730.1 33.333 264 159 6 72 325 211 467 3.33e-40 147
Msa0854180 AT1G05560.1 30.312 320 178 9 28 319 149 451 8.07e-40 145
Msa0854180 AT1G05560.2 33.333 264 144 6 76 319 250 501 1.27e-39 146
Msa0854180 AT2G36800.1 35.448 268 150 7 80 325 227 493 5.45e-39 144
Msa0854180 AT4G15550.1 33.721 258 140 5 76 316 227 470 6.29e-39 143
Msa0854180 AT2G23250.1 33.463 257 159 6 70 319 184 435 1.26e-38 142
Msa0854180 AT3G11340.1 31.157 337 192 11 1 320 132 445 2.22e-38 141
Msa0854180 AT1G22360.1 29.462 353 197 12 2 322 148 480 2.35e-38 142
Msa0854180 AT1G07250.1 34.201 269 154 7 68 321 214 474 3.88e-38 141
Msa0854180 AT3G46720.1 37.500 224 123 6 93 312 223 433 4.70e-38 140
Msa0854180 AT2G36750.1 33.582 268 155 6 80 325 223 489 5.27e-38 141
Msa0854180 AT1G22400.1 28.080 349 213 10 2 324 150 486 5.40e-38 141
Msa0854180 AT5G05880.1 33.462 260 150 5 71 319 201 448 7.09e-38 140
Msa0854180 AT4G15500.1 32.836 268 164 6 64 320 201 463 7.97e-38 140
Msa0854180 AT1G01390.1 32.899 307 167 8 36 316 171 464 8.90e-38 140
Msa0854180 AT1G01390.2 32.899 307 167 8 36 316 188 481 1.25e-37 140
Msa0854180 AT5G14860.1 32.509 283 160 9 60 325 213 481 1.51e-37 140
Msa0854180 AT1G10400.1 32.103 271 166 9 60 323 203 462 1.68e-37 139
Msa0854180 AT4G15490.1 32.819 259 160 5 72 320 213 467 2.13e-37 139
Msa0854180 AT2G15480.2 33.333 264 153 8 76 316 224 487 3.12e-37 139
Msa0854180 AT1G22380.1 28.134 359 201 10 2 325 150 486 4.47e-37 139
Msa0854180 AT3G55700.1 29.091 330 202 10 3 320 142 451 5.33e-37 138
Msa0854180 AT2G36780.1 31.183 279 163 8 70 321 214 490 6.64e-37 138
Msa0854180 AT5G05870.1 32.219 329 194 7 5 319 141 454 1.15e-36 137
Msa0854180 AT1G78270.1 28.986 345 206 11 2 320 150 481 1.38e-36 137
Msa0854180 AT2G15480.1 33.984 256 152 8 76 316 224 477 2.33e-36 137
Msa0854180 AT3G21560.1 33.333 234 140 5 99 325 252 476 3.12e-36 136
Msa0854180 AT2G15490.3 33.984 256 152 8 76 316 221 474 3.92e-36 136
Msa0854180 AT1G05530.1 31.395 258 148 5 87 320 203 455 6.56e-36 135
Msa0854180 AT1G22340.1 27.954 347 208 9 2 320 150 482 7.31e-36 135
Msa0854180 AT5G05860.1 30.909 330 198 8 3 320 137 448 1.48e-35 134
Msa0854180 AT2G15490.1 33.591 259 152 8 76 316 221 477 1.68e-35 134
Msa0854180 AT4G15480.1 27.760 317 205 7 21 322 174 481 2.82e-35 134
Msa0854180 AT3G46700.1 28.846 260 162 5 71 319 197 444 3.93e-35 132
Msa0854180 AT3G21790.1 28.406 345 210 8 2 319 144 478 4.22e-35 133
Msa0854180 AT2G29710.1 32.061 262 157 6 72 320 210 463 4.86e-35 133
Msa0854180 AT1G24100.1 28.571 329 205 9 8 319 143 458 4.95e-35 132
Msa0854180 AT2G36790.1 34.066 273 157 6 71 321 218 489 6.01e-35 133
Msa0854180 AT2G29740.1 30.330 333 204 10 2 319 155 474 6.57e-35 132
Msa0854180 AT2G23260.1 32.319 263 159 10 70 319 197 453 7.11e-35 132
Msa0854180 AT3G46650.1 30.855 269 161 6 58 315 174 428 7.64e-35 132
Msa0854180 AT2G36770.1 30.605 281 168 7 70 324 214 493 8.73e-35 132
Msa0854180 AT5G05890.1 33.333 273 158 6 59 319 192 452 1.49e-34 131
Msa0854180 AT3G21800.1 28.190 337 204 8 11 319 149 475 1.57e-34 132
Msa0854180 AT1G07260.1 32.453 265 157 6 73 322 217 474 2.27e-34 131
Msa0854180 AT2G16890.2 32.601 273 160 9 60 319 206 467 4.34e-34 130
Msa0854180 AT3G46690.1 34.025 241 134 7 84 312 215 442 7.39e-34 129
Msa0854180 AT3G53160.1 34.783 230 124 8 112 321 261 484 1.09e-33 129
Msa0854180 AT5G26310.1 29.299 314 167 13 36 312 165 460 1.15e-33 129
Msa0854180 AT4G15260.1 28.159 277 163 6 71 321 90 356 1.29e-33 127
Msa0854180 AT4G15280.1 26.648 349 216 9 2 323 142 477 1.93e-33 129
Msa0854180 AT4G15280.2 26.648 349 216 9 2 323 174 509 2.48e-33 129
Msa0854180 AT3G21780.1 27.647 340 217 7 2 319 136 468 4.53e-33 127
Msa0854180 AT2G29750.1 33.333 234 136 5 102 322 250 476 8.99e-33 127
Msa0854180 AT1G22360.2 27.479 353 192 11 2 322 148 468 9.40e-33 126
Msa0854180 AT2G26480.1 30.040 253 146 6 84 322 209 444 9.95e-33 126
Msa0854180 AT3G55710.1 26.970 330 215 8 3 320 140 455 1.38e-32 126
Msa0854180 AT2G36760.1 33.061 245 139 6 100 321 248 490 1.96e-32 126
Msa0854180 AT2G18570.1 32.296 257 135 6 83 312 215 459 1.98e-32 125
Msa0854180 AT3G21750.1 29.856 278 159 6 71 320 200 469 2.09e-32 125
Msa0854180 AT4G36770.1 31.004 229 119 5 98 302 233 446 3.41e-32 125
Msa0854180 AT4G34131.1 29.605 304 177 10 36 316 187 476 3.69e-32 125
Msa0854180 AT1G07240.1 31.227 269 160 7 70 320 215 476 6.73e-32 124
Msa0854180 AT4G14090.1 32.627 236 143 7 90 316 224 452 7.68e-32 124
Msa0854180 AT2G18560.1 29.825 342 186 12 3 312 50 369 6.06e-31 120
Msa0854180 AT3G02100.1 33.206 262 159 7 57 316 209 456 9.60e-31 121
Msa0854180 AT3G21760.1 27.246 345 214 8 2 319 146 480 1.88e-30 120
Msa0854180 AT5G03490.1 35.648 216 125 6 100 310 248 454 2.80e-30 120
Msa0854180 AT3G50740.1 27.424 361 178 13 2 312 140 466 4.07e-30 119
Msa0854180 AT4G34138.1 31.765 255 143 7 76 309 224 468 6.73e-30 119
Msa0854180 AT2G16890.3 34.649 228 128 7 60 275 206 424 1.65e-29 117
Msa0854180 AT1G22370.2 27.374 358 193 11 2 322 151 478 2.63e-29 117
Msa0854180 AT5G17040.2 28.906 256 166 5 70 320 94 338 2.70e-29 115
Msa0854180 AT3G53150.1 28.058 278 160 6 80 320 236 510 5.01e-29 117
Msa0854180 AT5G17030.1 26.948 308 205 7 23 321 161 457 6.68e-29 115
Msa0854180 AT5G17040.1 28.906 256 166 5 70 320 196 440 8.76e-29 115
Msa0854180 AT5G66690.1 28.839 267 144 7 72 306 200 452 4.42e-28 114
Msa0854180 AT3G16520.3 30.798 263 154 9 70 316 206 456 3.69e-27 111
Msa0854180 AT1G22370.1 27.879 330 172 11 30 322 8 308 3.79e-27 108
Msa0854180 AT5G17050.1 26.115 314 198 8 23 321 164 458 7.66e-27 110
Msa0854180 AT1G73880.1 31.034 232 140 6 100 320 245 467 1.39e-26 109
Msa0854180 AT5G12890.1 31.679 262 149 9 76 316 226 478 4.54e-26 108
Msa0854180 AT5G37950.2 34.132 167 96 2 73 229 175 337 5.55e-26 106
Msa0854180 AT5G37950.1 34.132 167 96 2 73 229 181 343 7.19e-26 105
Msa0854180 AT3G16520.2 30.738 244 144 8 70 297 206 440 3.35e-25 105
Msa0854180 AT3G16520.1 30.738 244 144 8 70 297 206 440 4.00e-25 105
Msa0854180 AT4G34135.1 31.034 261 161 6 72 316 221 478 1.30e-24 104
Msa0854180 AT1G30530.1 26.263 297 200 7 30 320 168 451 2.83e-24 102
Msa0854180 AT5G49690.1 31.081 222 140 7 80 297 221 433 1.15e-23 101
Msa0854180 AT5G65550.1 27.586 232 151 7 73 296 217 439 1.61e-21 95.1
Msa0854180 AT1G51210.1 30.899 178 114 5 120 294 261 432 2.77e-19 88.6
Msa0854180 AT3G22250.1 32.961 179 92 6 129 291 274 440 2.89e-19 88.6
Msa0854180 AT1G06000.1 27.820 266 160 9 76 319 178 433 4.54e-19 87.8
Msa0854180 AT4G01070.2 37.241 145 82 4 36 178 171 308 1.87e-18 85.1
Msa0854180 AT2G22590.1 24.042 287 186 10 31 297 174 448 1.17e-16 80.9
Msa0854180 AT1G64910.1 22.707 229 156 4 83 300 204 422 3.62e-14 73.2
Msa0854180 AT5G53990.1 21.074 242 170 4 70 300 191 422 2.71e-12 67.8
Msa0854180 AT5G54010.1 24.091 220 146 5 70 278 197 406 1.28e-11 65.5

Find 74 sgRNAs with CRISPR-Local

Find 220 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TAGGCTTGTTAGAAGATTTA+TGG 0.205219 5_4:+46447735 Msa0854180:CDS
AATAATATGAAAGCCTTTCT+TGG 0.246704 5_4:+46447853 Msa0854180:CDS
AAAGGTTGGTCCATCATTAT+TGG 0.266008 5_4:-46447619 None:intergenic
GTTAGAAGATTTATGGATTT+GGG 0.281168 5_4:+46447742 Msa0854180:CDS
CATCGTGAAGTTGAAAATCT+TGG 0.286582 5_4:-46447057 None:intergenic
TGTTAGAAGATTTATGGATT+TGG 0.300533 5_4:+46447741 Msa0854180:CDS
GTAGGTCCAATTGTGTAAAT+TGG 0.309840 5_4:-46447220 None:intergenic
TTGAGGCTCAATTTCATATA+TGG 0.312256 5_4:-46447164 None:intergenic
TATAATCATGTTTAACATCT+TGG 0.318063 5_4:-46447288 None:intergenic
GAAAGATATTTGTGGGGATA+AGG 0.325851 5_4:+46447468 Msa0854180:CDS
TCTATACCAATTTACACAAT+TGG 0.329382 5_4:+46447214 Msa0854180:CDS
AACTAACCTGAAGCATTTAC+TGG 0.357766 5_4:-46446562 None:intergenic
AAACGTGTGGATTACATTCC+GGG 0.361089 5_4:+46447016 Msa0854180:CDS
ATAGTTGAGGATTGGAAAGT+TGG 0.365038 5_4:+46447655 Msa0854180:CDS
GATTACCCAGTAAATGCTTC+AGG 0.373708 5_4:+46446556 Msa0854180:CDS
CAAACGTGTGGATTACATTC+CGG 0.374925 5_4:+46447015 Msa0854180:CDS
CTTTGGCCGTGACTAAAATA+AGG 0.387209 5_4:-46447247 None:intergenic
AAAGATATTTGTGGGGATAA+GGG 0.388826 5_4:+46447469 Msa0854180:CDS
TGGCTAGATAATCAACCCTT+TGG 0.405021 5_4:+46447316 Msa0854180:CDS
CTCCATTTGCAACTGCACTT+TGG 0.421432 5_4:-46447819 None:intergenic
TCTTACCTCTCCAATAATGA+TGG 0.427830 5_4:+46447609 Msa0854180:CDS
TAGTTGAGGATTGGAAAGTT+GGG 0.447378 5_4:+46447656 Msa0854180:CDS
AGTTGGGTGGAGAGTGGAGA+CGG 0.457769 5_4:+46447672 Msa0854180:CDS
CTAAGTGGAAAGATATTTGT+GGG 0.463305 5_4:+46447461 Msa0854180:CDS
TTTCTTGGTAATATATTACA+TGG 0.470876 5_4:+46447868 Msa0854180:CDS
TGCCAAAGTGCAGTTGCAAA+TGG 0.473909 5_4:+46447817 Msa0854180:CDS
ATGTAATATATTACCAAGAA+AGG 0.476400 5_4:-46447866 None:intergenic
TATGCATCAACACTCTCAAT+TGG 0.478373 5_4:-46447513 None:intergenic
AAGATATTTGTGGGGATAAG+GGG 0.481885 5_4:+46447470 Msa0854180:CDS
TTGGAAAGTTGGGTGGAGAG+TGG 0.485928 5_4:+46447666 Msa0854180:CDS
ATCATGTTTAACATCTTGGT+TGG 0.495001 5_4:-46447284 None:intergenic
GTAAGTATATAGTTGAGGAT+TGG 0.500681 5_4:+46447647 Msa0854180:CDS
ATTATTGGAGAGGTAAGAAA+AGG 0.507093 5_4:-46447604 None:intergenic
TATTGTGCTTTCTTCATCCA+TGG 0.508332 5_4:-46447127 None:intergenic
ACTATATACTTACTATTCAA+AGG 0.508938 5_4:-46447637 None:intergenic
GAGCTAATTCTAACAATCTA+CGG 0.512987 5_4:-46447093 None:intergenic
TCTAAGTGGAAAGATATTTG+TGG 0.514263 5_4:+46447460 Msa0854180:CDS
AGACGAATTGATGTGTTCCC+CGG 0.515037 5_4:-46447034 None:intergenic
TATACTTACTATTCAAAGGT+TGG 0.524591 5_4:-46447633 None:intergenic
CTTAAAACATCAATTGCTTG+AGG 0.525457 5_4:-46447181 None:intergenic
GTGTTGATGCATAGTGCTAT+AGG 0.529886 5_4:+46447523 Msa0854180:CDS
TTAAACATGATTATATAACT+TGG 0.531569 5_4:+46447296 Msa0854180:CDS
GGGTGGAATTCAACTAGAGA+AGG 0.545369 5_4:+46447565 Msa0854180:CDS
CAAATCAATGAAATTGCGAA+TGG 0.547383 5_4:+46447388 Msa0854180:CDS
TGACTAAAATAAGGTATGGT+AGG 0.550916 5_4:-46447238 None:intergenic
TAAGAAGAGATGAAATTGCT+AGG 0.556457 5_4:+46447716 Msa0854180:CDS
GAATAGTAAGTATATAGTTG+AGG 0.557074 5_4:+46447642 Msa0854180:CDS
GGCTCAATTTCATATATGGA+AGG 0.559502 5_4:-46447160 None:intergenic
GCCGTGACTAAAATAAGGTA+TGG 0.560100 5_4:-46447242 None:intergenic
CAAAGTGCAGTTGCAAATGG+AGG 0.563559 5_4:+46447820 Msa0854180:CDS
TTGAGGATTGGAAAGTTGGG+TGG 0.569689 5_4:+46447659 Msa0854180:CDS
GACATATAGAACAGAACCAA+AGG 0.583623 5_4:-46447332 None:intergenic
ATCTTGGTTGGTGCTTAGAG+AGG 0.584062 5_4:-46447272 None:intergenic
GCGAATGGTTTGCGCGAAAG+TGG 0.587045 5_4:+46447403 Msa0854180:CDS
ACATATAGAACAGAACCAAA+GGG 0.592505 5_4:-46447331 None:intergenic
TGGTGCTTAGAGAGGCACTT+TGG 0.597056 5_4:-46447264 None:intergenic
ATGATGAAGTGAAGGAAATG+AGG 0.601521 5_4:+46447767 Msa0854180:CDS
GCTCAATTTCATATATGGAA+GGG 0.606891 5_4:-46447159 None:intergenic
TTGGTCCATCATTATTGGAG+AGG 0.607037 5_4:-46447614 None:intergenic
TCTGTTCTATATGTCTCACA+AGG 0.608612 5_4:+46447340 Msa0854180:CDS
TAGCTCTGAATAACATACCA+TGG 0.609800 5_4:+46447110 Msa0854180:CDS
TGGGTGGAGAGTGGAGACGG+AGG 0.613549 5_4:+46447675 Msa0854180:CDS
AAAGTGCAGTTGCAAATGGA+GGG 0.623483 5_4:+46447821 Msa0854180:CDS
AACGTGTGGATTACATTCCG+GGG 0.625241 5_4:+46447017 Msa0854180:CDS
TGCGTGGAGAAAGTTCTAAG+TGG 0.625771 5_4:+46447446 Msa0854180:CDS
ACTAACCTGAAGCATTTACT+GGG 0.632218 5_4:-46446561 None:intergenic
TTTGGGTGATGATGAAGTGA+AGG 0.648831 5_4:+46447759 Msa0854180:CDS
AAAGTGGTGTTAGATTCTTG+TGG 0.666670 5_4:+46447419 Msa0854180:CDS
AGAAGTTGGTGACAAACGTG+TGG 0.670943 5_4:+46447003 Msa0854180:intron
AGATTCTTGTGGATAATGCG+TGG 0.682535 5_4:+46447430 Msa0854180:CDS
ACTCTCAATTGGTCACACCA+TGG 0.684804 5_4:-46447502 None:intergenic
TAAGTGGAAAGATATTTGTG+GGG 0.693286 5_4:+46447462 Msa0854180:CDS
TTGATGCATAGTGCTATAGG+TGG 0.705531 5_4:+46447526 Msa0854180:CDS
CTGTTCTATATGTCTCACAA+GGG 0.733356 5_4:+46447341 Msa0854180:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TATTTATTTATGTGTTTTTA+TGG + chr5_4:46446624-46446643 Msa0854180:intron 10.0%
!!! ATTTATTTATGTGTTTTTAT+GGG + chr5_4:46446625-46446644 Msa0854180:intron 10.0%
!!! TCTTATTTTTAATTTTGTAT+GGG + chr5_4:46446868-46446887 Msa0854180:intron 10.0%
!!! TTATTATCATAGTTTTTTTT+AGG - chr5_4:46446926-46446945 None:intergenic 10.0%
!!! TATTTATTTATGTGTTTTTA+TGG + chr5_4:46446624-46446643 Msa0854180:intron 10.0%
!!! ATTTATTTATGTGTTTTTAT+GGG + chr5_4:46446625-46446644 Msa0854180:intron 10.0%
!!! TCTTATTTTTAATTTTGTAT+GGG + chr5_4:46446868-46446887 Msa0854180:intron 10.0%
!!! TTATTATCATAGTTTTTTTT+AGG - chr5_4:46446926-46446945 None:intergenic 10.0%
!!! TACTGTTTTTACTAAATTTA+AGG + chr5_4:46446589-46446608 Msa0854180:intron 15.0%
!! CATTCTTAAACTATAATTAA+TGG - chr5_4:46446754-46446773 None:intergenic 15.0%
!! CATTAATTATAGTTTAAGAA+TGG + chr5_4:46446752-46446771 Msa0854180:intron 15.0%
!!! GTCTTATTTTTAATTTTGTA+TGG + chr5_4:46446867-46446886 Msa0854180:intron 15.0%
!! TTAAACATGATTATATAACT+TGG + chr5_4:46447296-46447315 Msa0854180:CDS 15.0%
!!! TACTGTTTTTACTAAATTTA+AGG + chr5_4:46446589-46446608 Msa0854180:intron 15.0%
!! CATTCTTAAACTATAATTAA+TGG - chr5_4:46446754-46446773 None:intergenic 15.0%
!! CATTAATTATAGTTTAAGAA+TGG + chr5_4:46446752-46446771 Msa0854180:intron 15.0%
!!! GTCTTATTTTTAATTTTGTA+TGG + chr5_4:46446867-46446886 Msa0854180:intron 15.0%
!! TTAAACATGATTATATAACT+TGG + chr5_4:46447296-46447315 Msa0854180:CDS 15.0%
!! GATAAACTCAAAAAAATAGA+TGG + chr5_4:46446699-46446718 Msa0854180:intron 20.0%
!! TCTTAAACTATAATTAATGG+TGG - chr5_4:46446751-46446770 None:intergenic 20.0%
!! TATAATCATGTTTAACATCT+TGG - chr5_4:46447291-46447310 None:intergenic 20.0%
!! ACTATATACTTACTATTCAA+AGG - chr5_4:46447640-46447659 None:intergenic 20.0%
!!! AAAGGCTTTCATATTATTTT+CGG - chr5_4:46447851-46447870 None:intergenic 20.0%
!! ATGTAATATATTACCAAGAA+AGG - chr5_4:46447869-46447888 None:intergenic 20.0%
!!! TTTCTTGGTAATATATTACA+TGG + chr5_4:46447868-46447887 Msa0854180:CDS 20.0%
!! GATAAACTCAAAAAAATAGA+TGG + chr5_4:46446699-46446718 Msa0854180:intron 20.0%
!! TCTTAAACTATAATTAATGG+TGG - chr5_4:46446751-46446770 None:intergenic 20.0%
!! TATAATCATGTTTAACATCT+TGG - chr5_4:46447291-46447310 None:intergenic 20.0%
!! ACTATATACTTACTATTCAA+AGG - chr5_4:46447640-46447659 None:intergenic 20.0%
!!! AAAGGCTTTCATATTATTTT+CGG - chr5_4:46447851-46447870 None:intergenic 20.0%
!! ATGTAATATATTACCAAGAA+AGG - chr5_4:46447869-46447888 None:intergenic 20.0%
!!! TTTCTTGGTAATATATTACA+TGG + chr5_4:46447868-46447887 Msa0854180:CDS 20.0%
!! TCTTAAACATTTTCGTCTTT+TGG + chr5_4:46446522-46446541 Msa0854180:CDS 25.0%
! AACTCAAAAAAATAGATGGT+TGG + chr5_4:46446703-46446722 Msa0854180:intron 25.0%
! AAACTATAATTAATGGTGGT+GGG - chr5_4:46446747-46446766 None:intergenic 25.0%
! TAAACTATAATTAATGGTGG+TGG - chr5_4:46446748-46446767 None:intergenic 25.0%
! TCTATACCAATTTACACAAT+TGG + chr5_4:46447214-46447233 Msa0854180:CDS 25.0%
! TATACTTACTATTCAAAGGT+TGG - chr5_4:46447636-46447655 None:intergenic 25.0%
! GAATAGTAAGTATATAGTTG+AGG + chr5_4:46447642-46447661 Msa0854180:CDS 25.0%
! TGTTAGAAGATTTATGGATT+TGG + chr5_4:46447741-46447760 Msa0854180:CDS 25.0%
! GTTAGAAGATTTATGGATTT+GGG + chr5_4:46447742-46447761 Msa0854180:CDS 25.0%
! AATAATATGAAAGCCTTTCT+TGG + chr5_4:46447853-46447872 Msa0854180:CDS 25.0%
!! TCTTAAACATTTTCGTCTTT+TGG + chr5_4:46446522-46446541 Msa0854180:CDS 25.0%
! AACTCAAAAAAATAGATGGT+TGG + chr5_4:46446703-46446722 Msa0854180:intron 25.0%
! AAACTATAATTAATGGTGGT+GGG - chr5_4:46446747-46446766 None:intergenic 25.0%
! TAAACTATAATTAATGGTGG+TGG - chr5_4:46446748-46446767 None:intergenic 25.0%
! TCTATACCAATTTACACAAT+TGG + chr5_4:46447214-46447233 Msa0854180:CDS 25.0%
! TATACTTACTATTCAAAGGT+TGG - chr5_4:46447636-46447655 None:intergenic 25.0%
! GAATAGTAAGTATATAGTTG+AGG + chr5_4:46447642-46447661 Msa0854180:CDS 25.0%
! TGTTAGAAGATTTATGGATT+TGG + chr5_4:46447741-46447760 Msa0854180:CDS 25.0%
! GTTAGAAGATTTATGGATTT+GGG + chr5_4:46447742-46447761 Msa0854180:CDS 25.0%
! AATAATATGAAAGCCTTTCT+TGG + chr5_4:46447853-46447872 Msa0854180:CDS 25.0%
!! TTTCGTCTTTTGGAGAAAAA+TGG + chr5_4:46446532-46446551 Msa0854180:CDS 30.0%
ACTTCATCTATTGTACCAAA+TGG - chr5_4:46446663-46446682 None:intergenic 30.0%
TTAGAGAGAGTTATAGCTTA+TGG + chr5_4:46446777-46446796 Msa0854180:intron 30.0%
TAGAGAGAGTTATAGCTTAT+GGG + chr5_4:46446778-46446797 Msa0854180:intron 30.0%
ACGAAAAGCAAATATACATC+AGG - chr5_4:46446827-46446846 None:intergenic 30.0%
TTTCGTGTATTTATCAGTTG+AGG + chr5_4:46446841-46446860 Msa0854180:intron 30.0%
TAAATTGTTGCAACAGAAGT+TGG + chr5_4:46446989-46447008 Msa0854180:intron 30.0%
GAGCTAATTCTAACAATCTA+CGG - chr5_4:46447096-46447115 None:intergenic 30.0%
GCTCAATTTCATATATGGAA+GGG - chr5_4:46447162-46447181 None:intergenic 30.0%
TTGAGGCTCAATTTCATATA+TGG - chr5_4:46447167-46447186 None:intergenic 30.0%
CTTAAAACATCAATTGCTTG+AGG - chr5_4:46447184-46447203 None:intergenic 30.0%
TGACTAAAATAAGGTATGGT+AGG - chr5_4:46447241-46447260 None:intergenic 30.0%
!!! ACCATACCTTATTTTAGTCA+CGG + chr5_4:46447241-46447260 Msa0854180:CDS 30.0%
ATCATGTTTAACATCTTGGT+TGG - chr5_4:46447287-46447306 None:intergenic 30.0%
ACATATAGAACAGAACCAAA+GGG - chr5_4:46447334-46447353 None:intergenic 30.0%
CAAATCAATGAAATTGCGAA+TGG + chr5_4:46447388-46447407 Msa0854180:CDS 30.0%
TCTAAGTGGAAAGATATTTG+TGG + chr5_4:46447460-46447479 Msa0854180:CDS 30.0%
CTAAGTGGAAAGATATTTGT+GGG + chr5_4:46447461-46447480 Msa0854180:CDS 30.0%
TAAGTGGAAAGATATTTGTG+GGG + chr5_4:46447462-46447481 Msa0854180:CDS 30.0%
AAAGATATTTGTGGGGATAA+GGG + chr5_4:46447469-46447488 Msa0854180:CDS 30.0%
ATTATTGGAGAGGTAAGAAA+AGG - chr5_4:46447607-46447626 None:intergenic 30.0%
GTAAGTATATAGTTGAGGAT+TGG + chr5_4:46447647-46447666 Msa0854180:CDS 30.0%
TAAGAAGAGATGAAATTGCT+AGG + chr5_4:46447716-46447735 Msa0854180:CDS 30.0%
!! TAGGCTTGTTAGAAGATTTA+TGG + chr5_4:46447735-46447754 Msa0854180:CDS 30.0%
!! TTTCGTCTTTTGGAGAAAAA+TGG + chr5_4:46446532-46446551 Msa0854180:CDS 30.0%
ACTTCATCTATTGTACCAAA+TGG - chr5_4:46446663-46446682 None:intergenic 30.0%
TTAGAGAGAGTTATAGCTTA+TGG + chr5_4:46446777-46446796 Msa0854180:intron 30.0%
TAGAGAGAGTTATAGCTTAT+GGG + chr5_4:46446778-46446797 Msa0854180:intron 30.0%
ACGAAAAGCAAATATACATC+AGG - chr5_4:46446827-46446846 None:intergenic 30.0%
TTTCGTGTATTTATCAGTTG+AGG + chr5_4:46446841-46446860 Msa0854180:intron 30.0%
TAAATTGTTGCAACAGAAGT+TGG + chr5_4:46446989-46447008 Msa0854180:intron 30.0%
GAGCTAATTCTAACAATCTA+CGG - chr5_4:46447096-46447115 None:intergenic 30.0%
GCTCAATTTCATATATGGAA+GGG - chr5_4:46447162-46447181 None:intergenic 30.0%
TTGAGGCTCAATTTCATATA+TGG - chr5_4:46447167-46447186 None:intergenic 30.0%
CTTAAAACATCAATTGCTTG+AGG - chr5_4:46447184-46447203 None:intergenic 30.0%
TGACTAAAATAAGGTATGGT+AGG - chr5_4:46447241-46447260 None:intergenic 30.0%
!!! ACCATACCTTATTTTAGTCA+CGG + chr5_4:46447241-46447260 Msa0854180:CDS 30.0%
ATCATGTTTAACATCTTGGT+TGG - chr5_4:46447287-46447306 None:intergenic 30.0%
ACATATAGAACAGAACCAAA+GGG - chr5_4:46447334-46447353 None:intergenic 30.0%
CAAATCAATGAAATTGCGAA+TGG + chr5_4:46447388-46447407 Msa0854180:CDS 30.0%
TCTAAGTGGAAAGATATTTG+TGG + chr5_4:46447460-46447479 Msa0854180:CDS 30.0%
CTAAGTGGAAAGATATTTGT+GGG + chr5_4:46447461-46447480 Msa0854180:CDS 30.0%
TAAGTGGAAAGATATTTGTG+GGG + chr5_4:46447462-46447481 Msa0854180:CDS 30.0%
AAAGATATTTGTGGGGATAA+GGG + chr5_4:46447469-46447488 Msa0854180:CDS 30.0%
ATTATTGGAGAGGTAAGAAA+AGG - chr5_4:46447607-46447626 None:intergenic 30.0%
GTAAGTATATAGTTGAGGAT+TGG + chr5_4:46447647-46447666 Msa0854180:CDS 30.0%
TAAGAAGAGATGAAATTGCT+AGG + chr5_4:46447716-46447735 Msa0854180:CDS 30.0%
!! TAGGCTTGTTAGAAGATTTA+TGG + chr5_4:46447735-46447754 Msa0854180:CDS 30.0%
! ACTAACCTGAAGCATTTACT+GGG - chr5_4:46446564-46446583 None:intergenic 35.0%
! AACTAACCTGAAGCATTTAC+TGG - chr5_4:46446565-46446584 None:intergenic 35.0%
ATCTATTGTACCAAATGGAG+AGG - chr5_4:46446658-46446677 None:intergenic 35.0%
GTGTATTTATCAGTTGAGGT+TGG + chr5_4:46446845-46446864 Msa0854180:intron 35.0%
CATCGTGAAGTTGAAAATCT+TGG - chr5_4:46447060-46447079 None:intergenic 35.0%
!! TAGCTCTGAATAACATACCA+TGG + chr5_4:46447110-46447129 Msa0854180:CDS 35.0%
TATTGTGCTTTCTTCATCCA+TGG - chr5_4:46447130-46447149 None:intergenic 35.0%
GGCTCAATTTCATATATGGA+AGG - chr5_4:46447163-46447182 None:intergenic 35.0%
GTAGGTCCAATTGTGTAAAT+TGG - chr5_4:46447223-46447242 None:intergenic 35.0%
GACATATAGAACAGAACCAA+AGG - chr5_4:46447335-46447354 None:intergenic 35.0%
TCTGTTCTATATGTCTCACA+AGG + chr5_4:46447340-46447359 Msa0854180:CDS 35.0%
CTGTTCTATATGTCTCACAA+GGG + chr5_4:46447341-46447360 Msa0854180:CDS 35.0%
! AAAGTGGTGTTAGATTCTTG+TGG + chr5_4:46447419-46447438 Msa0854180:CDS 35.0%
GAAAGATATTTGTGGGGATA+AGG + chr5_4:46447468-46447487 Msa0854180:CDS 35.0%
AAGATATTTGTGGGGATAAG+GGG + chr5_4:46447470-46447489 Msa0854180:CDS 35.0%
TATGCATCAACACTCTCAAT+TGG - chr5_4:46447516-46447535 None:intergenic 35.0%
! ATAGTGCTATAGGTGGTTTT+TGG + chr5_4:46447533-46447552 Msa0854180:CDS 35.0%
!!! ACTAGAGAAGGTTTGTTTTG+TGG + chr5_4:46447577-46447596 Msa0854180:CDS 35.0%
TCTTACCTCTCCAATAATGA+TGG + chr5_4:46447609-46447628 Msa0854180:CDS 35.0%
! AAAGGTTGGTCCATCATTAT+TGG - chr5_4:46447622-46447641 None:intergenic 35.0%
ATAGTTGAGGATTGGAAAGT+TGG + chr5_4:46447655-46447674 Msa0854180:CDS 35.0%
TAGTTGAGGATTGGAAAGTT+GGG + chr5_4:46447656-46447675 Msa0854180:CDS 35.0%
ATGATGAAGTGAAGGAAATG+AGG + chr5_4:46447767-46447786 Msa0854180:CDS 35.0%
! ACTAACCTGAAGCATTTACT+GGG - chr5_4:46446564-46446583 None:intergenic 35.0%
! AACTAACCTGAAGCATTTAC+TGG - chr5_4:46446565-46446584 None:intergenic 35.0%
ATCTATTGTACCAAATGGAG+AGG - chr5_4:46446658-46446677 None:intergenic 35.0%
GTGTATTTATCAGTTGAGGT+TGG + chr5_4:46446845-46446864 Msa0854180:intron 35.0%
CATCGTGAAGTTGAAAATCT+TGG - chr5_4:46447060-46447079 None:intergenic 35.0%
!! TAGCTCTGAATAACATACCA+TGG + chr5_4:46447110-46447129 Msa0854180:CDS 35.0%
TATTGTGCTTTCTTCATCCA+TGG - chr5_4:46447130-46447149 None:intergenic 35.0%
GGCTCAATTTCATATATGGA+AGG - chr5_4:46447163-46447182 None:intergenic 35.0%
GTAGGTCCAATTGTGTAAAT+TGG - chr5_4:46447223-46447242 None:intergenic 35.0%
GACATATAGAACAGAACCAA+AGG - chr5_4:46447335-46447354 None:intergenic 35.0%
TCTGTTCTATATGTCTCACA+AGG + chr5_4:46447340-46447359 Msa0854180:CDS 35.0%
CTGTTCTATATGTCTCACAA+GGG + chr5_4:46447341-46447360 Msa0854180:CDS 35.0%
! AAAGTGGTGTTAGATTCTTG+TGG + chr5_4:46447419-46447438 Msa0854180:CDS 35.0%
GAAAGATATTTGTGGGGATA+AGG + chr5_4:46447468-46447487 Msa0854180:CDS 35.0%
AAGATATTTGTGGGGATAAG+GGG + chr5_4:46447470-46447489 Msa0854180:CDS 35.0%
TATGCATCAACACTCTCAAT+TGG - chr5_4:46447516-46447535 None:intergenic 35.0%
! ATAGTGCTATAGGTGGTTTT+TGG + chr5_4:46447533-46447552 Msa0854180:CDS 35.0%
!!! ACTAGAGAAGGTTTGTTTTG+TGG + chr5_4:46447577-46447596 Msa0854180:CDS 35.0%
TCTTACCTCTCCAATAATGA+TGG + chr5_4:46447609-46447628 Msa0854180:CDS 35.0%
! AAAGGTTGGTCCATCATTAT+TGG - chr5_4:46447622-46447641 None:intergenic 35.0%
ATAGTTGAGGATTGGAAAGT+TGG + chr5_4:46447655-46447674 Msa0854180:CDS 35.0%
TAGTTGAGGATTGGAAAGTT+GGG + chr5_4:46447656-46447675 Msa0854180:CDS 35.0%
ATGATGAAGTGAAGGAAATG+AGG + chr5_4:46447767-46447786 Msa0854180:CDS 35.0%
GATTACCCAGTAAATGCTTC+AGG + chr5_4:46446556-46446575 Msa0854180:CDS 40.0%
! CAAACGTGTGGATTACATTC+CGG + chr5_4:46447015-46447034 Msa0854180:CDS 40.0%
! AAACGTGTGGATTACATTCC+GGG + chr5_4:46447016-46447035 Msa0854180:CDS 40.0%
GCCGTGACTAAAATAAGGTA+TGG - chr5_4:46447245-46447264 None:intergenic 40.0%
CTTTGGCCGTGACTAAAATA+AGG - chr5_4:46447250-46447269 None:intergenic 40.0%
TGGCTAGATAATCAACCCTT+TGG + chr5_4:46447316-46447335 Msa0854180:CDS 40.0%
! CTCACAAGGGAGTTTTCTTT+CGG + chr5_4:46447354-46447373 Msa0854180:CDS 40.0%
AGATTCTTGTGGATAATGCG+TGG + chr5_4:46447430-46447449 Msa0854180:CDS 40.0%
!!! ATAAGGGGTTTGTTTTGCCA+TGG + chr5_4:46447485-46447504 Msa0854180:CDS 40.0%
! GTGTTGATGCATAGTGCTAT+AGG + chr5_4:46447523-46447542 Msa0854180:CDS 40.0%
TTGATGCATAGTGCTATAGG+TGG + chr5_4:46447526-46447545 Msa0854180:CDS 40.0%
!!! GTGGTTTTTGGTCACATTGT+GGG + chr5_4:46447545-46447564 Msa0854180:CDS 40.0%
TTGGTCCATCATTATTGGAG+AGG - chr5_4:46447617-46447636 None:intergenic 40.0%
! TTTGGGTGATGATGAAGTGA+AGG + chr5_4:46447759-46447778 Msa0854180:CDS 40.0%
AAAGTGCAGTTGCAAATGGA+GGG + chr5_4:46447821-46447840 Msa0854180:CDS 40.0%
GATTACCCAGTAAATGCTTC+AGG + chr5_4:46446556-46446575 Msa0854180:CDS 40.0%
! CAAACGTGTGGATTACATTC+CGG + chr5_4:46447015-46447034 Msa0854180:CDS 40.0%
! AAACGTGTGGATTACATTCC+GGG + chr5_4:46447016-46447035 Msa0854180:CDS 40.0%
GCCGTGACTAAAATAAGGTA+TGG - chr5_4:46447245-46447264 None:intergenic 40.0%
CTTTGGCCGTGACTAAAATA+AGG - chr5_4:46447250-46447269 None:intergenic 40.0%
TGGCTAGATAATCAACCCTT+TGG + chr5_4:46447316-46447335 Msa0854180:CDS 40.0%
! CTCACAAGGGAGTTTTCTTT+CGG + chr5_4:46447354-46447373 Msa0854180:CDS 40.0%
AGATTCTTGTGGATAATGCG+TGG + chr5_4:46447430-46447449 Msa0854180:CDS 40.0%
!!! ATAAGGGGTTTGTTTTGCCA+TGG + chr5_4:46447485-46447504 Msa0854180:CDS 40.0%
! GTGTTGATGCATAGTGCTAT+AGG + chr5_4:46447523-46447542 Msa0854180:CDS 40.0%
TTGATGCATAGTGCTATAGG+TGG + chr5_4:46447526-46447545 Msa0854180:CDS 40.0%
!!! GTGGTTTTTGGTCACATTGT+GGG + chr5_4:46447545-46447564 Msa0854180:CDS 40.0%
TTGGTCCATCATTATTGGAG+AGG - chr5_4:46447617-46447636 None:intergenic 40.0%
! TTTGGGTGATGATGAAGTGA+AGG + chr5_4:46447759-46447778 Msa0854180:CDS 40.0%
AAAGTGCAGTTGCAAATGGA+GGG + chr5_4:46447821-46447840 Msa0854180:CDS 40.0%
GGGTTAAGATCCTCTCCATT+TGG + chr5_4:46446645-46446664 Msa0854180:intron 45.0%
!! AGAAGTTGGTGACAAACGTG+TGG + chr5_4:46447003-46447022 Msa0854180:intron 45.0%
! AACGTGTGGATTACATTCCG+GGG + chr5_4:46447017-46447036 Msa0854180:CDS 45.0%
AGACGAATTGATGTGTTCCC+CGG - chr5_4:46447037-46447056 None:intergenic 45.0%
! ATCTTGGTTGGTGCTTAGAG+AGG - chr5_4:46447275-46447294 None:intergenic 45.0%
!! TGCGTGGAGAAAGTTCTAAG+TGG + chr5_4:46447446-46447465 Msa0854180:CDS 45.0%
ACTCTCAATTGGTCACACCA+TGG - chr5_4:46447505-46447524 None:intergenic 45.0%
!!! GGTGGTTTTTGGTCACATTG+TGG + chr5_4:46447544-46447563 Msa0854180:CDS 45.0%
!!! GTTTTTGGTCACATTGTGGG+TGG + chr5_4:46447548-46447567 Msa0854180:CDS 45.0%
GGGTGGAATTCAACTAGAGA+AGG + chr5_4:46447565-46447584 Msa0854180:CDS 45.0%
TTGAGGATTGGAAAGTTGGG+TGG + chr5_4:46447659-46447678 Msa0854180:CDS 45.0%
TGCCAAAGTGCAGTTGCAAA+TGG + chr5_4:46447817-46447836 Msa0854180:CDS 45.0%
CTCCATTTGCAACTGCACTT+TGG - chr5_4:46447822-46447841 None:intergenic 45.0%
CAAAGTGCAGTTGCAAATGG+AGG + chr5_4:46447820-46447839 Msa0854180:CDS 45.0%
GGGTTAAGATCCTCTCCATT+TGG + chr5_4:46446645-46446664 Msa0854180:intron 45.0%
!! AGAAGTTGGTGACAAACGTG+TGG + chr5_4:46447003-46447022 Msa0854180:intron 45.0%
! AACGTGTGGATTACATTCCG+GGG + chr5_4:46447017-46447036 Msa0854180:CDS 45.0%
AGACGAATTGATGTGTTCCC+CGG - chr5_4:46447037-46447056 None:intergenic 45.0%
! ATCTTGGTTGGTGCTTAGAG+AGG - chr5_4:46447275-46447294 None:intergenic 45.0%
!! TGCGTGGAGAAAGTTCTAAG+TGG + chr5_4:46447446-46447465 Msa0854180:CDS 45.0%
ACTCTCAATTGGTCACACCA+TGG - chr5_4:46447505-46447524 None:intergenic 45.0%
!!! GGTGGTTTTTGGTCACATTG+TGG + chr5_4:46447544-46447563 Msa0854180:CDS 45.0%
!!! GTTTTTGGTCACATTGTGGG+TGG + chr5_4:46447548-46447567 Msa0854180:CDS 45.0%
GGGTGGAATTCAACTAGAGA+AGG + chr5_4:46447565-46447584 Msa0854180:CDS 45.0%
TTGAGGATTGGAAAGTTGGG+TGG + chr5_4:46447659-46447678 Msa0854180:CDS 45.0%
TGCCAAAGTGCAGTTGCAAA+TGG + chr5_4:46447817-46447836 Msa0854180:CDS 45.0%
CTCCATTTGCAACTGCACTT+TGG - chr5_4:46447822-46447841 None:intergenic 45.0%
CAAAGTGCAGTTGCAAATGG+AGG + chr5_4:46447820-46447839 Msa0854180:CDS 45.0%
! GGTTGGTCCTACCACTAAGT+AGG + chr5_4:46446720-46446739 Msa0854180:intron 50.0%
!! TGGTGCTTAGAGAGGCACTT+TGG - chr5_4:46447267-46447286 None:intergenic 50.0%
TTGGAAAGTTGGGTGGAGAG+TGG + chr5_4:46447666-46447685 Msa0854180:CDS 50.0%
! GGTTGGTCCTACCACTAAGT+AGG + chr5_4:46446720-46446739 Msa0854180:intron 50.0%
!! TGGTGCTTAGAGAGGCACTT+TGG - chr5_4:46447267-46447286 None:intergenic 50.0%
TTGGAAAGTTGGGTGGAGAG+TGG + chr5_4:46447666-46447685 Msa0854180:CDS 50.0%
GGTGGGACCTACTTAGTGGT+AGG - chr5_4:46446730-46446749 None:intergenic 55.0%
!! TGGTGGTGGGACCTACTTAG+TGG - chr5_4:46446734-46446753 None:intergenic 55.0%
! GCGAATGGTTTGCGCGAAAG+TGG + chr5_4:46447403-46447422 Msa0854180:CDS 55.0%
AGTTGGGTGGAGAGTGGAGA+CGG + chr5_4:46447672-46447691 Msa0854180:CDS 55.0%
GGTGGGACCTACTTAGTGGT+AGG - chr5_4:46446730-46446749 None:intergenic 55.0%
!! TGGTGGTGGGACCTACTTAG+TGG - chr5_4:46446734-46446753 None:intergenic 55.0%
! GCGAATGGTTTGCGCGAAAG+TGG + chr5_4:46447403-46447422 Msa0854180:CDS 55.0%
AGTTGGGTGGAGAGTGGAGA+CGG + chr5_4:46447672-46447691 Msa0854180:CDS 55.0%
TGGGTGGAGAGTGGAGACGG+AGG + chr5_4:46447675-46447694 Msa0854180:CDS 65.0%
TGGGTGGAGAGTGGAGACGG+AGG + chr5_4:46447675-46447694 Msa0854180:CDS 65.0%
Chromosome Type Strat End Strand Name
chr5_4 gene 46446499 46447903 46446499 ID=Msa0854180;Name=Msa0854180
chr5_4 mRNA 46446499 46447903 46446499 ID=Msa0854180-mRNA-1;Parent=Msa0854180;Name=Msa0854180-mRNA-1;_AED=0.46;_eAED=0.46;_QI=0|0|0|1|1|1|2|0|325
chr5_4 exon 46446499 46446577 46446499 ID=Msa0854180-mRNA-1:exon:14727;Parent=Msa0854180-mRNA-1
chr5_4 exon 46447005 46447903 46447005 ID=Msa0854180-mRNA-1:exon:14728;Parent=Msa0854180-mRNA-1
chr5_4 CDS 46446499 46446577 46446499 ID=Msa0854180-mRNA-1:cds;Parent=Msa0854180-mRNA-1
chr5_4 CDS 46447005 46447903 46447005 ID=Msa0854180-mRNA-1:cds;Parent=Msa0854180-mRNA-1
Gene Sequence

>Msa0854180

ATGTCGGCGTCGTTTCTTCTTGTTCTTAAACATTTTCGTCTTTTGGAGAAAAATGGTGATTACCCAGTAAATGCTTCAGAAGTTGGTGACAAACGTGTGGATTACATTCCGGGGAACACATCAATTCGTCTCCAAGATTTTCAACTTCACGATGCAAACTTACGCATCCGTAGATTGTTAGAATTAGCTCTGAATAACATACCATGGATGAAGAAAGCACAATATCTATTATTCCCTTCCATATATGAAATTGAGCCTCAAGCAATTGATGTTTTAAGAGAAGAATTTTCTATACCAATTTACACAATTGGACCTACCATACCTTATTTTAGTCACGGCCAAAGTGCCTCTCTAAGCACCAACCAAGATGTTAAACATGATTATATAACTTGGCTAGATAATCAACCCTTTGGTTCTGTTCTATATGTCTCACAAGGGAGTTTTCTTTCGGTTTCAAGTGAACAAATCAATGAAATTGCGAATGGTTTGCGCGAAAGTGGTGTTAGATTCTTGTGGATAATGCGTGGAGAAAGTTCTAAGTGGAAAGATATTTGTGGGGATAAGGGGTTTGTTTTGCCATGGTGTGACCAATTGAGAGTGTTGATGCATAGTGCTATAGGTGGTTTTTGGTCACATTGTGGGTGGAATTCAACTAGAGAAGGTTTGTTTTGTGGTGTGCCTTTTCTTACCTCTCCAATAATGATGGACCAACCTTTGAATAGTAAGTATATAGTTGAGGATTGGAAAGTTGGGTGGAGAGTGGAGACGGAGGTTAAAGATGATGTTTTGATAAGAAGAGATGAAATTGCTAGGCTTGTTAGAAGATTTATGGATTTGGGTGATGATGAAGTGAAGGAAATGAGGAAAAGAGCAAGAGATCTTCAACAAATATGCCAAAGTGCAGTTGCAAATGGAGGGTCATCCGAAAATAATATGAAAGCCTTTCTTGGTAATATATTACATGGATTCAAACCATAG
Protein sequence

>Msa0854180

MSASFLLVLKHFRLLEKNGDYPVNASEVGDKRVDYIPGNTSIRLQDFQLHDANLRIRRLLELALNNIPWMKKAQYLLFPSIYEIEPQAIDVLREEFSIPIYTIGPTIPYFSHGQSASLSTNQDVKHDYITWLDNQPFGSVLYVSQGSFLSVSSEQINEIANGLRESGVRFLWIMRGESSKWKDICGDKGFVLPWCDQLRVLMHSAIGGFWSHCGWNSTREGLFCGVPFLTSPIMMDQPLNSKYIVEDWKVGWRVETEVKDDVLIRRDEIARLVRRFMDLGDDEVKEMRKRARDLQQICQSAVANGGSSENNMKAFLGNILHGFKP*