AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0194540


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0194540 MtrunA17_Chr2g0285451 100.000 69 0 0 37 105 1 69 1.58e-44 138
Msa0194540 MtrunA17_Chr4g0033761 94.203 69 4 0 37 105 1 69 4.16e-42 132
Msa0194540 MtrunA17_Chr8g0376751 89.855 69 7 0 37 105 1 69 1.03e-39 126
Msa0194540 MtrunA17_Chr7g0216191 86.957 69 9 0 37 105 1 69 8.16e-37 119
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0194540 AT2G43460.1 91.304 69 6 0 37 105 1 69 1.20e-40 129
Msa0194540 AT3G59540.1 91.304 69 6 0 37 105 1 69 1.20e-40 129

Find 39 sgRNAs with CRISPR-Local

Find 202 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTACGAAAACGTTTAGGATT+AGG 0.264287 2_1:-10739567 Msa0194540:CDS
TTCTCTCCATTTCATCCATT+TGG 0.273233 2_1:+10737577 None:intergenic
TAAGCAAATCAACGAGATTA+AGG 0.294566 2_1:-10738465 Msa0194540:CDS
TTCAAGACCTTTAGAGGTAT+TGG 0.299687 2_1:-10737724 Msa0194540:exon
TTTGTTTCTGTGATAAGTTT+TGG 0.304054 2_1:-10737401 Msa0194540:three_prime_UTR
ATCTCTCCAAATGGATGAAA+TGG 0.308166 2_1:-10737583 Msa0194540:three_prime_UTR
TACGAAAACGTTTAGGATTA+GGG 0.309907 2_1:-10739566 Msa0194540:CDS
TGAGTGTTCAAGACCTTTAG+AGG 0.372905 2_1:-10737730 Msa0194540:exon
AAAGAACTACGAAAACGTTT+AGG 0.375594 2_1:-10739573 Msa0194540:CDS
TGACCTCGCATCCTTCCTTC+TGG 0.376233 2_1:+10738427 None:intergenic
TTGAGATTGTAGCCAGGAAA+TGG 0.416064 2_1:-10737519 Msa0194540:three_prime_UTR
TGGAGAGATATAGATCCATT+TGG 0.428839 2_1:+10737597 None:intergenic
TGGATCTATATCTCTCCAAA+TGG 0.457727 2_1:-10737592 Msa0194540:three_prime_UTR
TTCTCATCCAATACCTCTAA+AGG 0.468641 2_1:+10737717 None:intergenic
CTCACTGCCTCTTGCAACAA+TGG 0.469145 2_1:-10739506 Msa0194540:intron
GAGTTAAGATCCTCTCCATT+TGG 0.475407 2_1:+10737552 None:intergenic
AGTGAGAATCAAGAGGAGTA+AGG 0.485084 2_1:-10738405 Msa0194540:CDS
AGGTATTGGATGAGAAATCA+AGG 0.495732 2_1:-10737710 Msa0194540:three_prime_UTR
TAAGGATGTGGTTAAGTTCA+AGG 0.499148 2_1:-10738387 Msa0194540:CDS
AAGGGTAAAGATCCTCCAAA+TGG 0.506011 2_1:-10737612 Msa0194540:three_prime_UTR
GAAATGGAGAGAATACCAAA+TGG 0.517514 2_1:-10737567 Msa0194540:three_prime_UTR
ATGTGGTTAAGTTCAAGGTC+AGG 0.518401 2_1:-10738382 Msa0194540:CDS
AATCAAGAGGAGTAAGGATG+TGG 0.526249 2_1:-10738399 Msa0194540:CDS
ACTAAGTGTGTAGAGGTACT+TGG 0.532503 2_1:+10738355 None:intergenic
TTAATCTCGTTGATTTGCTT+AGG 0.534022 2_1:+10738467 None:intergenic
CCTTCTCACTGCCAGAAGGA+AGG 0.537276 2_1:-10738438 Msa0194540:CDS
TTGAAGCAATCACTTCCTCC+AGG 0.552717 2_1:-10738305 Msa0194540:intron
AGAGATATAGATCCATTTGG+AGG 0.564353 2_1:+10737600 None:intergenic
CCTTCCTTCTGGCAGTGAGA+AGG 0.565796 2_1:+10738438 None:intergenic
TTTGTGAGTTGATCTTGTAA+GGG 0.574402 2_1:-10737630 Msa0194540:three_prime_UTR
AAAATCACCATTGTTGCAAG+AGG 0.583889 2_1:+10739499 None:intergenic
ATTTCCTTCTCACTGCCAGA+AGG 0.584170 2_1:-10738442 Msa0194540:CDS
TGTAACTTGAGATTGTAGCC+AGG 0.592891 2_1:-10737525 Msa0194540:three_prime_UTR
CGAGGTCAGTGAGAATCAAG+AGG 0.618562 2_1:-10738412 Msa0194540:CDS
GGAGAGAATACCAAATGGAG+AGG 0.623091 2_1:-10737562 Msa0194540:three_prime_UTR
CTGCCAGAAGGAAGGATGCG+AGG 0.654921 2_1:-10738430 Msa0194540:CDS
CAAACACACTAAGTGTGTAG+AGG 0.657075 2_1:+10738348 None:intergenic
TTGGATGAGAAATCAAGGAG+AGG 0.695988 2_1:-10737705 Msa0194540:three_prime_UTR
TTAGGATTAGGGTTTATCAG+CGG 0.714795 2_1:-10739555 Msa0194540:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATTAATAAAAATATAAAAT+GGG + chr2_1:10737625-10737644 None:intergenic 0.0%
!! AAATTAATAAAAATATAAAA+TGG + chr2_1:10737626-10737645 None:intergenic 0.0%
!! AATTAATAAAAATATAAAAT+GGG + chr2_1:10737625-10737644 None:intergenic 0.0%
!! AAATTAATAAAAATATAAAA+TGG + chr2_1:10737626-10737645 None:intergenic 0.0%
!! AATTGAGAAATTAGAAAAAA+GGG + chr2_1:10737498-10737517 None:intergenic 15.0%
!!! TATGTTTCTTTTTTGTTAAT+TGG - chr2_1:10737563-10737582 Msa0194540:three_prime_UTR 15.0%
!!! TGTTATAAAGTCTATTTTTT+CGG - chr2_1:10737667-10737686 Msa0194540:three_prime_UTR 15.0%
!! AACAATAACAAACAAAAATT+TGG + chr2_1:10738400-10738419 None:intergenic 15.0%
!!! ATTTTATATTTATTTAGCCT+AGG - chr2_1:10738705-10738724 Msa0194540:intron 15.0%
!!! ATTTTTAACTCAATTTATCT+TGG - chr2_1:10738892-10738911 Msa0194540:intron 15.0%
!! AATTGAGAAATTAGAAAAAA+GGG + chr2_1:10737498-10737517 None:intergenic 15.0%
!!! TATGTTTCTTTTTTGTTAAT+TGG - chr2_1:10737563-10737582 Msa0194540:three_prime_UTR 15.0%
!!! TGTTATAAAGTCTATTTTTT+CGG - chr2_1:10737667-10737686 Msa0194540:three_prime_UTR 15.0%
!! AACAATAACAAACAAAAATT+TGG + chr2_1:10738400-10738419 None:intergenic 15.0%
!!! ATTTTATATTTATTTAGCCT+AGG - chr2_1:10738705-10738724 Msa0194540:intron 15.0%
!!! ATTTTTAACTCAATTTATCT+TGG - chr2_1:10738892-10738911 Msa0194540:intron 15.0%
!! ATTGAGAAATTAGAAAAAAG+GGG + chr2_1:10737497-10737516 None:intergenic 20.0%
!! CAATTGAGAAATTAGAAAAA+AGG + chr2_1:10737499-10737518 None:intergenic 20.0%
!!! TGATTAATTGATTTGTTAAG+AGG - chr2_1:10737770-10737789 Msa0194540:intron 20.0%
!!! GATTAATTGATTTGTTAAGA+GGG - chr2_1:10737771-10737790 Msa0194540:intron 20.0%
!! TAAATACTCATGTTAGATTT+AGG - chr2_1:10737819-10737838 Msa0194540:intron 20.0%
!!! CATTATTTTTATCATGTCAA+GGG - chr2_1:10738175-10738194 Msa0194540:intron 20.0%
!! TAGTTCAATTGTCTATATTT+AGG - chr2_1:10738744-10738763 Msa0194540:intron 20.0%
!! TTACAATATTTGGTTACTAT+TGG + chr2_1:10739053-10739072 None:intergenic 20.0%
!! CTTTATCATGTTACAATATT+TGG + chr2_1:10739063-10739082 None:intergenic 20.0%
!!! TTCCTTTTGGAAAATTAAAA+TGG - chr2_1:10739119-10739138 Msa0194540:intron 20.0%
!!! ATCCATTTTAATTTTCCAAA+AGG + chr2_1:10739124-10739143 None:intergenic 20.0%
!! AAATTGATATGGTTAAAGAA+GGG + chr2_1:10739155-10739174 None:intergenic 20.0%
!! ATTGAGAAATTAGAAAAAAG+GGG + chr2_1:10737497-10737516 None:intergenic 20.0%
!! CAATTGAGAAATTAGAAAAA+AGG + chr2_1:10737499-10737518 None:intergenic 20.0%
!!! TGATTAATTGATTTGTTAAG+AGG - chr2_1:10737770-10737789 Msa0194540:intron 20.0%
!!! GATTAATTGATTTGTTAAGA+GGG - chr2_1:10737771-10737790 Msa0194540:intron 20.0%
!! TAAATACTCATGTTAGATTT+AGG - chr2_1:10737819-10737838 Msa0194540:intron 20.0%
!!! CATTATTTTTATCATGTCAA+GGG - chr2_1:10738175-10738194 Msa0194540:intron 20.0%
!! TAGTTCAATTGTCTATATTT+AGG - chr2_1:10738744-10738763 Msa0194540:intron 20.0%
!! TTACAATATTTGGTTACTAT+TGG + chr2_1:10739053-10739072 None:intergenic 20.0%
!! CTTTATCATGTTACAATATT+TGG + chr2_1:10739063-10739082 None:intergenic 20.0%
!!! TTCCTTTTGGAAAATTAAAA+TGG - chr2_1:10739119-10739138 Msa0194540:intron 20.0%
!!! ATCCATTTTAATTTTCCAAA+AGG + chr2_1:10739124-10739143 None:intergenic 20.0%
!! AAATTGATATGGTTAAAGAA+GGG + chr2_1:10739155-10739174 None:intergenic 20.0%
! TTGAGAAATTAGAAAAAAGG+GGG + chr2_1:10737496-10737515 None:intergenic 25.0%
! GAAGTAGTTTATGAAAAAAC+AGG + chr2_1:10737940-10737959 None:intergenic 25.0%
!! ATTTGCGTTGTGATATTTTA+TGG - chr2_1:10738135-10738154 Msa0194540:intron 25.0%
! CCTTGACATGATAAAAATAA+TGG + chr2_1:10738177-10738196 None:intergenic 25.0%
!!! CCATTATTTTTATCATGTCA+AGG - chr2_1:10738174-10738193 Msa0194540:intron 25.0%
! TTAAACTGTTGATACAAACA+GGG + chr2_1:10738770-10738789 None:intergenic 25.0%
! ATTAAACTGTTGATACAAAC+AGG + chr2_1:10738771-10738790 None:intergenic 25.0%
! TCAAATAAGTCAATTCAATC+CGG - chr2_1:10739019-10739038 Msa0194540:intron 25.0%
! CAAATTGATATGGTTAAAGA+AGG + chr2_1:10739156-10739175 None:intergenic 25.0%
! ACATATAGCACAAATTGATA+TGG + chr2_1:10739166-10739185 None:intergenic 25.0%
!! TGAAAGATTTTTATGTCTGA+TGG - chr2_1:10739479-10739498 Msa0194540:intron 25.0%
!!! ATGGAATATTTTAGTGCTAT+GGG - chr2_1:10739498-10739517 Msa0194540:intron 25.0%
!!! TTTGTTTCTGTGATAAGTTT+TGG - chr2_1:10739561-10739580 Msa0194540:CDS 25.0%
! TTGAGAAATTAGAAAAAAGG+GGG + chr2_1:10737496-10737515 None:intergenic 25.0%
! GAAGTAGTTTATGAAAAAAC+AGG + chr2_1:10737940-10737959 None:intergenic 25.0%
!! ATTTGCGTTGTGATATTTTA+TGG - chr2_1:10738135-10738154 Msa0194540:intron 25.0%
! CCTTGACATGATAAAAATAA+TGG + chr2_1:10738177-10738196 None:intergenic 25.0%
!!! CCATTATTTTTATCATGTCA+AGG - chr2_1:10738174-10738193 Msa0194540:intron 25.0%
! TTAAACTGTTGATACAAACA+GGG + chr2_1:10738770-10738789 None:intergenic 25.0%
! ATTAAACTGTTGATACAAAC+AGG + chr2_1:10738771-10738790 None:intergenic 25.0%
! TCAAATAAGTCAATTCAATC+CGG - chr2_1:10739019-10739038 Msa0194540:intron 25.0%
! CAAATTGATATGGTTAAAGA+AGG + chr2_1:10739156-10739175 None:intergenic 25.0%
! ACATATAGCACAAATTGATA+TGG + chr2_1:10739166-10739185 None:intergenic 25.0%
!! TGAAAGATTTTTATGTCTGA+TGG - chr2_1:10739479-10739498 Msa0194540:intron 25.0%
!!! ATGGAATATTTTAGTGCTAT+GGG - chr2_1:10739498-10739517 Msa0194540:intron 25.0%
!!! TTTGTTTCTGTGATAAGTTT+TGG - chr2_1:10739561-10739580 Msa0194540:CDS 25.0%
AAAGAACTACGAAAACGTTT+AGG - chr2_1:10737389-10737408 Msa0194540:three_prime_UTR 30.0%
! TACGAAAACGTTTAGGATTA+GGG - chr2_1:10737396-10737415 Msa0194540:three_prime_UTR 30.0%
AAAAATAAGCCAATCGAAAC+GGG + chr2_1:10737846-10737865 None:intergenic 30.0%
CAAAAATAAGCCAATCGAAA+CGG + chr2_1:10737847-10737866 None:intergenic 30.0%
AAAAATAAGTCGATCCAAAC+AGG - chr2_1:10738022-10738041 Msa0194540:intron 30.0%
!! CTAAAATTCTAAGACCTGTT+TGG + chr2_1:10738039-10738058 None:intergenic 30.0%
! CAAACAGGTCTTAGAATTTT+AGG - chr2_1:10738037-10738056 Msa0194540:intron 30.0%
AATAAGCTGAAAACAGTTGA+TGG + chr2_1:10738237-10738256 None:intergenic 30.0%
ATTAAGCTATAAGCCATTCT+GGG + chr2_1:10738271-10738290 None:intergenic 30.0%
TATTAAGCTATAAGCCATTC+TGG + chr2_1:10738272-10738291 None:intergenic 30.0%
!! TTAATCTCGTTGATTTGCTT+AGG + chr2_1:10738498-10738517 None:intergenic 30.0%
TAAGCAAATCAACGAGATTA+AGG - chr2_1:10738497-10738516 Msa0194540:intron 30.0%
AATTGAACTAGTTGAACTGT+TGG + chr2_1:10738734-10738753 None:intergenic 30.0%
CTTATTTGAGGAACATATCT+TGG + chr2_1:10739008-10739027 None:intergenic 30.0%
! GGATTGAATTGACTTATTTG+AGG + chr2_1:10739020-10739039 None:intergenic 30.0%
TTTGGTTACTATTGGCAAAA+GGG + chr2_1:10739045-10739064 None:intergenic 30.0%
ATTTGGTTACTATTGGCAAA+AGG + chr2_1:10739046-10739065 None:intergenic 30.0%
GATAAAGTTAACATTAGCAC+TGG - chr2_1:10739076-10739095 Msa0194540:intron 30.0%
! TTTCTTCTATGTCTTCCTTT+TGG - chr2_1:10739106-10739125 Msa0194540:intron 30.0%
!!! TTTTGTGAGTTGATCTTGTA+AGG - chr2_1:10739331-10739350 Msa0194540:intron 30.0%
!! TTTGTGAGTTGATCTTGTAA+GGG - chr2_1:10739332-10739351 Msa0194540:intron 30.0%
TCATTACAAAAACCATTTCC+TGG + chr2_1:10739458-10739477 None:intergenic 30.0%
!!! GATGGAATATTTTAGTGCTA+TGG - chr2_1:10739497-10739516 Msa0194540:intron 30.0%
AAAGAACTACGAAAACGTTT+AGG - chr2_1:10737389-10737408 Msa0194540:three_prime_UTR 30.0%
! TACGAAAACGTTTAGGATTA+GGG - chr2_1:10737396-10737415 Msa0194540:three_prime_UTR 30.0%
AAAAATAAGCCAATCGAAAC+GGG + chr2_1:10737846-10737865 None:intergenic 30.0%
CAAAAATAAGCCAATCGAAA+CGG + chr2_1:10737847-10737866 None:intergenic 30.0%
AAAAATAAGTCGATCCAAAC+AGG - chr2_1:10738022-10738041 Msa0194540:intron 30.0%
!! CTAAAATTCTAAGACCTGTT+TGG + chr2_1:10738039-10738058 None:intergenic 30.0%
! CAAACAGGTCTTAGAATTTT+AGG - chr2_1:10738037-10738056 Msa0194540:intron 30.0%
AATAAGCTGAAAACAGTTGA+TGG + chr2_1:10738237-10738256 None:intergenic 30.0%
ATTAAGCTATAAGCCATTCT+GGG + chr2_1:10738271-10738290 None:intergenic 30.0%
TATTAAGCTATAAGCCATTC+TGG + chr2_1:10738272-10738291 None:intergenic 30.0%
!! TTAATCTCGTTGATTTGCTT+AGG + chr2_1:10738498-10738517 None:intergenic 30.0%
TAAGCAAATCAACGAGATTA+AGG - chr2_1:10738497-10738516 Msa0194540:intron 30.0%
AATTGAACTAGTTGAACTGT+TGG + chr2_1:10738734-10738753 None:intergenic 30.0%
CTTATTTGAGGAACATATCT+TGG + chr2_1:10739008-10739027 None:intergenic 30.0%
! GGATTGAATTGACTTATTTG+AGG + chr2_1:10739020-10739039 None:intergenic 30.0%
TTTGGTTACTATTGGCAAAA+GGG + chr2_1:10739045-10739064 None:intergenic 30.0%
ATTTGGTTACTATTGGCAAA+AGG + chr2_1:10739046-10739065 None:intergenic 30.0%
GATAAAGTTAACATTAGCAC+TGG - chr2_1:10739076-10739095 Msa0194540:intron 30.0%
! TTTCTTCTATGTCTTCCTTT+TGG - chr2_1:10739106-10739125 Msa0194540:intron 30.0%
!!! TTTTGTGAGTTGATCTTGTA+AGG - chr2_1:10739331-10739350 Msa0194540:intron 30.0%
!! TTTGTGAGTTGATCTTGTAA+GGG - chr2_1:10739332-10739351 Msa0194540:intron 30.0%
TCATTACAAAAACCATTTCC+TGG + chr2_1:10739458-10739477 None:intergenic 30.0%
!!! GATGGAATATTTTAGTGCTA+TGG - chr2_1:10739497-10739516 Msa0194540:intron 30.0%
! CTACGAAAACGTTTAGGATT+AGG - chr2_1:10737395-10737414 Msa0194540:three_prime_UTR 35.0%
TTAGGATTAGGGTTTATCAG+CGG - chr2_1:10737407-10737426 Msa0194540:three_prime_UTR 35.0%
AAAATCACCATTGTTGCAAG+AGG + chr2_1:10737466-10737485 None:intergenic 35.0%
ATTATTCGATGCTAAGAAGC+TGG - chr2_1:10737704-10737723 Msa0194540:three_prime_UTR 35.0%
TTATTCGATGCTAAGAAGCT+GGG - chr2_1:10737705-10737724 Msa0194540:three_prime_UTR 35.0%
TAAGGATGTGGTTAAGTTCA+AGG - chr2_1:10738575-10738594 Msa0194540:intron 35.0%
TAAACACTTGTGAGACTGTT+TGG + chr2_1:10738983-10739002 None:intergenic 35.0%
! ACAATGCTCTTGATGTTTTC+AGG - chr2_1:10739207-10739226 Msa0194540:intron 35.0%
! TTCAAGACCTTTAGAGGTAT+TGG - chr2_1:10739238-10739257 Msa0194540:intron 35.0%
TTCTCATCCAATACCTCTAA+AGG + chr2_1:10739248-10739267 None:intergenic 35.0%
!! AGGTATTGGATGAGAAATCA+AGG - chr2_1:10739252-10739271 Msa0194540:intron 35.0%
AGAGATATAGATCCATTTGG+AGG + chr2_1:10739365-10739384 None:intergenic 35.0%
TGGAGAGATATAGATCCATT+TGG + chr2_1:10739368-10739387 None:intergenic 35.0%
TGGATCTATATCTCTCCAAA+TGG - chr2_1:10739370-10739389 Msa0194540:intron 35.0%
ATCTCTCCAAATGGATGAAA+TGG - chr2_1:10739379-10739398 Msa0194540:intron 35.0%
TTCTCTCCATTTCATCCATT+TGG + chr2_1:10739388-10739407 None:intergenic 35.0%
GAAATGGAGAGAATACCAAA+TGG - chr2_1:10739395-10739414 Msa0194540:intron 35.0%
! CTACGAAAACGTTTAGGATT+AGG - chr2_1:10737395-10737414 Msa0194540:three_prime_UTR 35.0%
TTAGGATTAGGGTTTATCAG+CGG - chr2_1:10737407-10737426 Msa0194540:three_prime_UTR 35.0%
AAAATCACCATTGTTGCAAG+AGG + chr2_1:10737466-10737485 None:intergenic 35.0%
ATTATTCGATGCTAAGAAGC+TGG - chr2_1:10737704-10737723 Msa0194540:three_prime_UTR 35.0%
TTATTCGATGCTAAGAAGCT+GGG - chr2_1:10737705-10737724 Msa0194540:three_prime_UTR 35.0%
TAAGGATGTGGTTAAGTTCA+AGG - chr2_1:10738575-10738594 Msa0194540:intron 35.0%
TAAACACTTGTGAGACTGTT+TGG + chr2_1:10738983-10739002 None:intergenic 35.0%
! ACAATGCTCTTGATGTTTTC+AGG - chr2_1:10739207-10739226 Msa0194540:intron 35.0%
! TTCAAGACCTTTAGAGGTAT+TGG - chr2_1:10739238-10739257 Msa0194540:intron 35.0%
TTCTCATCCAATACCTCTAA+AGG + chr2_1:10739248-10739267 None:intergenic 35.0%
!! AGGTATTGGATGAGAAATCA+AGG - chr2_1:10739252-10739271 Msa0194540:intron 35.0%
AGAGATATAGATCCATTTGG+AGG + chr2_1:10739365-10739384 None:intergenic 35.0%
TGGAGAGATATAGATCCATT+TGG + chr2_1:10739368-10739387 None:intergenic 35.0%
TGGATCTATATCTCTCCAAA+TGG - chr2_1:10739370-10739389 Msa0194540:intron 35.0%
ATCTCTCCAAATGGATGAAA+TGG - chr2_1:10739379-10739398 Msa0194540:intron 35.0%
TTCTCTCCATTTCATCCATT+TGG + chr2_1:10739388-10739407 None:intergenic 35.0%
GAAATGGAGAGAATACCAAA+TGG - chr2_1:10739395-10739414 Msa0194540:intron 35.0%
CTAAGAAGCTGGGTTAAGTT+AGG - chr2_1:10737715-10737734 Msa0194540:exon 40.0%
AGTGAGAATCAAGAGGAGTA+AGG - chr2_1:10738557-10738576 Msa0194540:intron 40.0%
AATCAAGAGGAGTAAGGATG+TGG - chr2_1:10738563-10738582 Msa0194540:intron 40.0%
ATGTGGTTAAGTTCAAGGTC+AGG - chr2_1:10738580-10738599 Msa0194540:intron 40.0%
!! ACTAAGTGTGTAGAGGTACT+TGG + chr2_1:10738610-10738629 None:intergenic 40.0%
CAAACACACTAAGTGTGTAG+AGG + chr2_1:10738617-10738636 None:intergenic 40.0%
TGTAAATCCAACTACAGACC+TGG + chr2_1:10738678-10738697 None:intergenic 40.0%
AGTTGAACTGTTGGTATCCT+AGG + chr2_1:10738725-10738744 None:intergenic 40.0%
TGAGTGTTCAAGACCTTTAG+AGG - chr2_1:10739232-10739251 Msa0194540:intron 40.0%
TTGGATGAGAAATCAAGGAG+AGG - chr2_1:10739257-10739276 Msa0194540:intron 40.0%
AAGGGTAAAGATCCTCCAAA+TGG - chr2_1:10739350-10739369 Msa0194540:intron 40.0%
GAGTTAAGATCCTCTCCATT+TGG + chr2_1:10739413-10739432 None:intergenic 40.0%
TGTAACTTGAGATTGTAGCC+AGG - chr2_1:10739437-10739456 Msa0194540:intron 40.0%
TTGAGATTGTAGCCAGGAAA+TGG - chr2_1:10739443-10739462 Msa0194540:intron 40.0%
CTAAGAAGCTGGGTTAAGTT+AGG - chr2_1:10737715-10737734 Msa0194540:exon 40.0%
AGTGAGAATCAAGAGGAGTA+AGG - chr2_1:10738557-10738576 Msa0194540:intron 40.0%
AATCAAGAGGAGTAAGGATG+TGG - chr2_1:10738563-10738582 Msa0194540:intron 40.0%
ATGTGGTTAAGTTCAAGGTC+AGG - chr2_1:10738580-10738599 Msa0194540:intron 40.0%
!! ACTAAGTGTGTAGAGGTACT+TGG + chr2_1:10738610-10738629 None:intergenic 40.0%
CAAACACACTAAGTGTGTAG+AGG + chr2_1:10738617-10738636 None:intergenic 40.0%
TGTAAATCCAACTACAGACC+TGG + chr2_1:10738678-10738697 None:intergenic 40.0%
AGTTGAACTGTTGGTATCCT+AGG + chr2_1:10738725-10738744 None:intergenic 40.0%
TGAGTGTTCAAGACCTTTAG+AGG - chr2_1:10739232-10739251 Msa0194540:intron 40.0%
TTGGATGAGAAATCAAGGAG+AGG - chr2_1:10739257-10739276 Msa0194540:intron 40.0%
AAGGGTAAAGATCCTCCAAA+TGG - chr2_1:10739350-10739369 Msa0194540:intron 40.0%
GAGTTAAGATCCTCTCCATT+TGG + chr2_1:10739413-10739432 None:intergenic 40.0%
TGTAACTTGAGATTGTAGCC+AGG - chr2_1:10739437-10739456 Msa0194540:intron 40.0%
TTGAGATTGTAGCCAGGAAA+TGG - chr2_1:10739443-10739462 Msa0194540:intron 40.0%
! GATTTAGGACCCGTTTCGAT+TGG - chr2_1:10737834-10737853 Msa0194540:intron 45.0%
! TTTTCATCAGCTGCCCAGAA+TGG - chr2_1:10738255-10738274 Msa0194540:intron 45.0%
ATTTCCTTCTCACTGCCAGA+AGG - chr2_1:10738520-10738539 Msa0194540:intron 45.0%
TTGAAGCAATCACTTCCTCC+AGG - chr2_1:10738657-10738676 Msa0194540:intron 45.0%
AAATCCAACTACAGACCTGG+AGG + chr2_1:10738675-10738694 None:intergenic 45.0%
GTTACTATTGGCAAAAGGGC+CGG + chr2_1:10739041-10739060 None:intergenic 45.0%
GGAGAGAATACCAAATGGAG+AGG - chr2_1:10739400-10739419 Msa0194540:intron 45.0%
! GATTTAGGACCCGTTTCGAT+TGG - chr2_1:10737834-10737853 Msa0194540:intron 45.0%
! TTTTCATCAGCTGCCCAGAA+TGG - chr2_1:10738255-10738274 Msa0194540:intron 45.0%
ATTTCCTTCTCACTGCCAGA+AGG - chr2_1:10738520-10738539 Msa0194540:intron 45.0%
TTGAAGCAATCACTTCCTCC+AGG - chr2_1:10738657-10738676 Msa0194540:intron 45.0%
AAATCCAACTACAGACCTGG+AGG + chr2_1:10738675-10738694 None:intergenic 45.0%
GTTACTATTGGCAAAAGGGC+CGG + chr2_1:10739041-10739060 None:intergenic 45.0%
GGAGAGAATACCAAATGGAG+AGG - chr2_1:10739400-10739419 Msa0194540:intron 45.0%
CTCACTGCCTCTTGCAACAA+TGG - chr2_1:10737456-10737475 Msa0194540:three_prime_UTR 50.0%
CGAGGTCAGTGAGAATCAAG+AGG - chr2_1:10738550-10738569 Msa0194540:intron 50.0%
ACTTCCTCCAGGTCTGTAGT+TGG - chr2_1:10738668-10738687 Msa0194540:intron 50.0%
CTCACTGCCTCTTGCAACAA+TGG - chr2_1:10737456-10737475 Msa0194540:three_prime_UTR 50.0%
CGAGGTCAGTGAGAATCAAG+AGG - chr2_1:10738550-10738569 Msa0194540:intron 50.0%
ACTTCCTCCAGGTCTGTAGT+TGG - chr2_1:10738668-10738687 Msa0194540:intron 50.0%
CCTTCCTTCTGGCAGTGAGA+AGG + chr2_1:10738527-10738546 None:intergenic 55.0%
CCTTCTCACTGCCAGAAGGA+AGG - chr2_1:10738524-10738543 Msa0194540:intron 55.0%
TGACCTCGCATCCTTCCTTC+TGG + chr2_1:10738538-10738557 None:intergenic 55.0%
CCTTCCTTCTGGCAGTGAGA+AGG + chr2_1:10738527-10738546 None:intergenic 55.0%
CCTTCTCACTGCCAGAAGGA+AGG - chr2_1:10738524-10738543 Msa0194540:intron 55.0%
TGACCTCGCATCCTTCCTTC+TGG + chr2_1:10738538-10738557 None:intergenic 55.0%
CTGCCAGAAGGAAGGATGCG+AGG - chr2_1:10738532-10738551 Msa0194540:intron 60.0%
CTGCCAGAAGGAAGGATGCG+AGG - chr2_1:10738532-10738551 Msa0194540:intron 60.0%
Chromosome Type Strat End Strand Name
chr2_1 gene 10737367 10739617 10737367 ID=Msa0194540;Name=Msa0194540
chr2_1 mRNA 10737367 10739617 10737367 ID=Msa0194540-mRNA-1;Parent=Msa0194540;Name=Msa0194540-mRNA-1;_AED=0.11;_eAED=0.11;_QI=0|1|0.66|1|1|1|3|366|105
chr2_1 exon 10737367 10737755 10737367 ID=Msa0194540-mRNA-1:exon:4826;Parent=Msa0194540-mRNA-1
chr2_1 exon 10738306 10738489 10738306 ID=Msa0194540-mRNA-1:exon:4825;Parent=Msa0194540-mRNA-1
chr2_1 exon 10739507 10739617 10739507 ID=Msa0194540-mRNA-1:exon:4824;Parent=Msa0194540-mRNA-1
chr2_1 CDS 10739507 10739617 10739507 ID=Msa0194540-mRNA-1:cds;Parent=Msa0194540-mRNA-1
chr2_1 CDS 10738306 10738489 10738306 ID=Msa0194540-mRNA-1:cds;Parent=Msa0194540-mRNA-1
chr2_1 CDS 10737733 10737755 10737733 ID=Msa0194540-mRNA-1:cds;Parent=Msa0194540-mRNA-1
chr2_1 three_prime_UTR 10737367 10737732 10737367 ID=Msa0194540-mRNA-1:three_prime_utr;Parent=Msa0194540-mRNA-1
Gene Sequence

>Msa0194540

ATGGGTATTTTTCGGGGAAATCAAAGAACTACGAAAACGTTTAGGATTAGGGTTTATCAGCGGCAGCAACATTTCACACTTCGTTCGAACTCACTGCCTCTTGCAACAATGCCTAAGCAAATCAACGAGATTAAGGATTTCCTTCTCACTGCCAGAAGGAAGGATGCGAGGTCAGTGAGAATCAAGAGGAGTAAGGATGTGGTTAAGTTCAAGGTCAGGTGTTCCAAGTACCTCTACACACTTAGTGTGTTTGACGTTGAGAAAGCTGACAAATTGAAGCAATCACTTCCTCCAGGTTTGAGTGTTCAAGACCTTTAG

Protein sequence

>Msa0194540

MGIFRGNQRTTKTFRIRVYQRQQHFTLRSNSLPLATMPKQINEIKDFLLTARRKDARSVRIKRSKDVVKFKVRCSKYLYTLSVFDVEKADKLKQSLPPGLSVQDL*