AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0854500

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0854500 MtrunA17_Chr5g0438021 95.582 249 11 0 27 275 77 325 2.94e-176 488
Msa0854500 MtrunA17_Chr3g0129061 82.329 249 44 0 27 275 74 322 2.52e-142 402
Msa0854500 MtrunA17_Chr3g0129051 78.313 249 54 0 27 275 74 322 1.68e-138 393
Msa0854500 MtrunA17_Chr3g0129041 78.715 249 53 0 27 275 74 322 3.02e-131 374
Msa0854500 MtrunA17_Chr3g0106921 70.800 250 72 1 27 275 71 320 1.71e-128 367
Msa0854500 MtrunA17_Chr5g0432441 67.729 251 79 2 27 275 76 326 2.61e-119 344
Msa0854500 MtrunA17_Chr2g0320071 66.265 249 82 1 27 275 71 317 4.49e-116 336
Msa0854500 MtrunA17_Chr2g0320101 64.257 249 87 1 27 275 71 317 4.99e-112 325
Msa0854500 MtrunA17_Chr2g0320091 63.454 249 90 1 27 275 71 318 2.69e-110 321
Msa0854500 MtrunA17_Chr4g0038151 64.683 252 87 2 26 275 70 321 4.96e-110 320
Msa0854500 MtrunA17_Chr2g0320061 64.400 250 86 3 27 275 71 318 8.93e-110 320
Msa0854500 MtrunA17_Chr7g0244461 61.600 250 94 1 26 275 65 312 3.76e-109 318
Msa0854500 MtrunA17_Chr2g0320051 62.400 250 91 2 27 275 71 318 6.72e-109 317
Msa0854500 MtrunA17_Chr4g0038161 63.492 252 90 2 26 275 69 320 2.31e-108 316
Msa0854500 MtrunA17_Chr3g0114451 62.651 249 91 1 27 275 72 318 3.81e-108 316
Msa0854500 MtrunA17_Chr4g0038171 63.636 253 89 3 26 275 69 321 3.94e-108 316
Msa0854500 MtrunA17_Chr4g0043391 62.846 253 91 3 26 275 72 324 3.46e-107 313
Msa0854500 MtrunA17_Chr7g0244451 60.800 250 96 1 26 275 69 316 9.95e-105 307
Msa0854500 MtrunA17_Chr2g0320031 61.200 250 94 3 27 275 72 319 1.43e-104 306
Msa0854500 MtrunA17_Chr4g0013171 60.558 251 95 3 27 275 73 321 1.28e-102 301
Msa0854500 MtrunA17_Chr4g0013201 56.000 250 108 1 26 275 91 338 6.70e-100 295
Msa0854500 MtrunA17_Chr3g0106901 57.721 272 108 2 4 275 59 323 2.93e-99 293
Msa0854500 MtrunA17_Chr4g0013191 56.000 250 110 0 26 275 91 340 3.01e-99 294
Msa0854500 MtrunA17_Chr4g0013181 58.566 251 100 3 27 275 105 353 2.05e-98 292
Msa0854500 MtrunA17_Chr5g0432341 58.268 254 98 5 27 275 71 321 1.91e-95 283
Msa0854500 MtrunA17_Chr5g0432351 57.874 254 99 5 27 275 71 321 4.62e-95 283
Msa0854500 MtrunA17_Chr5g0432331 58.268 254 98 5 27 275 102 352 1.11e-94 283
Msa0854500 MtrunA17_Chr7g0224371 55.200 250 109 2 26 275 76 322 7.67e-94 280
Msa0854500 MtrunA17_Chr1g0213061 56.522 253 104 4 26 275 72 321 5.74e-92 275
Msa0854500 MtrunA17_Chr3g0107881 55.118 254 107 4 27 275 73 324 2.97e-90 270
Msa0854500 MtrunA17_Chr5g0404721 51.550 258 115 3 26 275 75 330 4.31e-90 270
Msa0854500 MtrunA17_Chr8g0372601 53.101 258 111 3 26 275 75 330 1.95e-89 268
Msa0854500 MtrunA17_Chr4g0068621 50.988 253 120 2 27 275 84 336 7.21e-86 259
Msa0854500 MtrunA17_Chr7g0258811 50.579 259 116 5 27 275 115 371 3.87e-83 254
Msa0854500 MtrunA17_Chr5g0400331 51.145 262 113 3 27 275 72 331 8.01e-82 249
Msa0854500 MtrunA17_Chr5g0402571 49.219 256 121 3 27 275 73 326 2.11e-80 245
Msa0854500 MtrunA17_Chr2g0299691 51.341 261 111 5 27 275 102 358 2.31e-80 246
Msa0854500 MtrunA17_Chr2g0292271 49.807 259 119 3 26 275 74 330 4.00e-80 245
Msa0854500 MtrunA17_Chr5g0402581 49.219 256 121 3 27 275 73 326 5.36e-80 244
Msa0854500 MtrunA17_Chr1g0155611 48.649 259 122 3 26 275 91 347 1.36e-78 241
Msa0854500 MtrunA17_Chr4g0070951 50.192 261 115 5 26 275 73 329 2.50e-78 240
Msa0854500 MtrunA17_Chr1g0175561 48.846 260 119 5 27 275 70 326 7.68e-78 239
Msa0854500 MtrunA17_Chr2g0292181 49.612 258 119 3 27 275 84 339 9.36e-78 239
Msa0854500 MtrunA17_Chr2g0291751 49.035 259 121 4 26 275 74 330 2.24e-76 236
Msa0854500 MtrunA17_Chr2g0292091 46.332 259 128 4 26 275 69 325 2.78e-76 235
Msa0854500 MtrunA17_Chr2g0292151 48.649 259 122 4 26 275 74 330 5.94e-76 235
Msa0854500 MtrunA17_Chr2g0292211 47.876 259 124 3 26 275 85 341 1.05e-75 234
Msa0854500 MtrunA17_Chr5g0421411 46.565 262 128 4 25 275 25 285 4.62e-75 230
Msa0854500 MtrunA17_Chr2g0292251 46.124 258 128 3 27 275 74 329 2.15e-74 231
Msa0854500 MtrunA17_Chr5g0432401 51.779 253 75 7 27 274 75 285 6.68e-74 227
Msa0854500 MtrunA17_Chr2g0292111 46.332 259 128 4 26 275 74 330 2.48e-73 228
Msa0854500 MtrunA17_Chr2g0292241 46.332 259 128 3 26 275 74 330 3.22e-73 228
Msa0854500 MtrunA17_Chr2g0292101 47.104 259 126 3 26 275 70 326 4.23e-73 227
Msa0854500 MtrunA17_Chr4g0013721 46.875 256 124 4 27 275 146 396 2.60e-72 227
Msa0854500 MtrunA17_Chr4g0013821 46.875 256 124 4 27 275 74 324 2.95e-72 225
Msa0854500 MtrunA17_Chr2g0292291 44.788 259 133 3 26 275 75 332 2.06e-70 221
Msa0854500 MtrunA17_Chr2g0292261 47.104 259 126 3 26 275 74 330 8.14e-69 216
Msa0854500 MtrunA17_Chr3g0114461 56.316 190 80 2 87 275 5 192 1.64e-68 210
Msa0854500 MtrunA17_Chr1g0188431 45.238 252 130 5 25 275 83 327 7.87e-67 211
Msa0854500 MtrunA17_Chr3g0128061 41.860 258 142 2 25 275 70 326 3.57e-66 209
Msa0854500 MtrunA17_Chr7g0225221 44.488 254 134 4 26 275 70 320 2.95e-65 206
Msa0854500 MtrunA17_Chr6g0477071 43.651 252 134 5 25 275 98 342 5.38e-65 206
Msa0854500 MtrunA17_Chr2g0279061 44.444 261 127 6 26 275 13 266 1.26e-63 200
Msa0854500 MtrunA17_Chr2g0279041 44.061 261 128 6 26 275 72 325 1.17e-62 200
Msa0854500 MtrunA17_Chr1g0194151 41.313 259 143 2 26 275 75 333 5.52e-61 196
Msa0854500 MtrunA17_Chr1g0204011 42.636 258 133 6 26 275 72 322 7.80e-60 192
Msa0854500 MtrunA17_Chr1g0164891 41.923 260 140 4 26 275 134 392 5.76e-59 192
Msa0854500 MtrunA17_Chr1g0157051 42.969 256 132 6 26 274 69 317 5.14e-58 187
Msa0854500 MtrunA17_Chr4g0063671 42.748 262 131 7 26 275 66 320 5.37e-58 187
Msa0854500 MtrunA17_Chr5g0405991 41.699 259 132 7 26 275 68 316 5.65e-58 187
Msa0854500 MtrunA17_Chr8g0371381 42.308 260 131 7 25 275 70 319 1.06e-57 187
Msa0854500 MtrunA17_Chr2g0322861 42.146 261 134 7 26 275 132 386 4.86e-57 187
Msa0854500 MtrunA17_Chr4g0024121 39.689 257 146 3 26 275 72 326 5.37e-57 185
Msa0854500 MtrunA17_Chr1g0148021 41.379 261 138 6 26 275 72 328 1.17e-55 182
Msa0854500 MtrunA17_Chr1g0194271 40.075 267 142 4 26 275 75 340 1.66e-55 182
Msa0854500 MtrunA17_Chr4g0076211 39.535 258 138 6 26 275 86 333 5.46e-55 180
Msa0854500 MtrunA17_Chr4g0046131 40.467 257 141 5 26 271 87 342 6.96e-53 175
Msa0854500 MtrunA17_Chr4g0072091 39.695 262 139 6 26 275 69 323 7.99e-53 174
Msa0854500 MtrunA17_Chr2g0329641 37.931 261 143 6 27 275 82 335 2.99e-52 173
Msa0854500 MtrunA17_Chr1g0181511 36.220 254 158 3 25 275 71 323 4.34e-52 172
Msa0854500 MtrunA17_Chr5g0401431 37.879 264 142 5 26 274 72 328 8.72e-52 172
Msa0854500 MtrunA17_Chr2g0278671 40.076 262 138 7 26 275 69 323 9.60e-52 172
Msa0854500 MtrunA17_Chr2g0296621 38.571 280 148 7 4 275 78 341 9.98e-52 172
Msa0854500 MtrunA17_Chr7g0254201 36.863 255 149 4 26 275 65 312 1.28e-51 171
Msa0854500 MtrunA17_Chr1g0197411 36.680 259 152 5 27 275 74 330 1.37e-51 171
Msa0854500 MtrunA17_Chr7g0268501 38.911 257 144 5 26 275 70 320 2.95e-51 170
Msa0854500 MtrunA17_Chr7g0268521 38.911 257 144 5 26 275 70 320 2.95e-51 170
Msa0854500 MtrunA17_Chr6g0460711 38.247 251 150 4 27 275 67 314 3.96e-51 170
Msa0854500 MtrunA17_Chr4g0053871 38.281 256 141 5 26 271 72 320 1.44e-50 169
Msa0854500 MtrunA17_Chr4g0075241 33.725 255 163 2 26 275 74 327 1.06e-49 166
Msa0854500 MtrunA17_Chr6g0467161 41.270 252 139 5 27 275 91 336 1.10e-49 167
Msa0854500 MtrunA17_Chr2g0316791 36.396 283 142 6 26 271 121 402 1.16e-49 169
Msa0854500 MtrunA17_Chr6g0467251 38.189 254 147 5 26 275 81 328 1.40e-49 167
Msa0854500 MtrunA17_Chr2g0316481 36.396 283 142 6 26 271 121 402 2.89e-49 167
Msa0854500 MtrunA17_Chr2g0316831 36.042 283 143 6 26 271 157 438 3.66e-49 168
Msa0854500 MtrunA17_Chr6g0451571 36.154 260 149 4 27 275 81 334 7.61e-49 164
Msa0854500 MtrunA17_Chr2g0316191 36.268 284 142 6 26 271 121 403 9.35e-49 166
Msa0854500 MtrunA17_Chr7g0254231 35.060 251 156 4 26 275 67 311 2.45e-48 162
Msa0854500 MtrunA17_Chr8g0364291 37.109 256 154 4 27 275 69 324 1.60e-47 161
Msa0854500 MtrunA17_Chr1g0181481 35.458 251 158 3 28 275 74 323 1.70e-47 160
Msa0854500 MtrunA17_Chr1g0181431 34.387 253 162 3 26 275 72 323 9.49e-47 159
Msa0854500 MtrunA17_Chr2g0311251 34.266 286 150 6 26 274 55 339 2.54e-46 158
Msa0854500 MtrunA17_Chr6g0467121 37.549 253 147 7 26 275 119 363 2.41e-44 154
Msa0854500 MtrunA17_Chr4g0074851 34.263 251 161 3 24 271 75 324 3.09e-44 152
Msa0854500 MtrunA17_Chr2g0292281 41.038 212 104 4 73 275 17 216 3.04e-43 147
Msa0854500 MtrunA17_Chr2g0311241 30.581 327 147 7 26 274 105 429 5.41e-41 146
Msa0854500 MtrunA17_Chr3g0136751 35.385 260 151 4 26 275 70 322 1.65e-40 142
Msa0854500 MtrunA17_Chr2g0316141 34.815 270 154 8 27 275 11 279 3.40e-39 138
Msa0854500 MtrunA17_Chr2g0316181 34.815 270 154 8 27 275 11 279 3.40e-39 138
Msa0854500 MtrunA17_Chr5g0413051 34.483 261 157 5 27 275 119 377 7.10e-39 139
Msa0854500 MtrunA17_Chr5g0432321 53.782 119 52 2 102 220 17 132 8.97e-37 127
Msa0854500 MtrunA17_Chr4g0004591 32.479 234 132 3 66 274 123 355 7.36e-36 131
Msa0854500 MtrunA17_Chr1g0181501 31.383 188 125 3 91 275 3 189 4.28e-28 106
Msa0854500 MtrunA17_Chr2g0316811 31.092 238 111 6 26 211 95 331 6.90e-28 109
Msa0854500 MtrunA17_Chr5g0432361 53.333 90 39 2 187 274 20 108 3.76e-26 99.0
Msa0854500 MtrunA17_Chr3g0114491 75.806 62 15 0 27 88 64 125 1.22e-25 98.6
Msa0854500 MtrunA17_Chr3g0104101 37.324 142 77 4 145 275 9 149 4.21e-21 87.0
Msa0854500 MtrunA17_Chr4g0013811 48.649 74 38 0 92 165 6 79 2.03e-19 80.5
Msa0854500 MtrunA17_Chr7g0254181 42.105 95 52 1 53 147 31 122 2.50e-18 79.7
Msa0854500 MtrunA17_Chr1g0196191 57.971 69 28 1 20 88 24 91 1.32e-17 77.8
Msa0854500 MtrunA17_Chr2g0316771 28.409 176 91 3 131 271 7 182 1.24e-15 73.2
Msa0854500 MtrunA17_Chr6g0468731 51.515 66 28 2 26 91 28 89 4.74e-14 66.2
Msa0854500 MtrunA17_Chr3g0137751 27.315 216 101 6 49 254 141 310 4.60e-13 68.2
Msa0854500 MtrunA17_Chr7g0268491 40.476 84 49 1 192 275 15 97 1.55e-12 62.4
Msa0854500 MtrunA17_Chr7g0254171 38.356 73 44 1 26 98 3 74 1.37e-11 60.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0854500 AT5G05340.1 74.699 249 63 0 27 275 76 324 2.13e-135 385
Msa0854500 AT5G58400.1 66.000 250 84 1 27 275 76 325 3.44e-114 332
Msa0854500 AT5G58390.1 64.800 250 87 1 27 275 67 316 1.92e-112 327
Msa0854500 AT1G14550.1 60.079 253 96 4 26 275 71 321 2.71e-99 293
Msa0854500 AT1G14540.1 55.777 251 107 3 27 275 67 315 1.31e-91 274
Msa0854500 AT4G36430.1 52.713 258 112 3 26 275 75 330 3.02e-91 273
Msa0854500 AT5G66390.1 51.938 258 114 3 26 275 78 333 8.38e-90 270
Msa0854500 AT2G18150.1 50.775 258 117 3 26 275 81 336 7.06e-88 265
Msa0854500 AT3G50990.1 51.362 257 115 4 27 275 87 341 1.99e-85 259
Msa0854500 AT1G44970.1 51.737 259 114 3 26 275 90 346 8.29e-84 255
Msa0854500 AT2G18140.1 49.225 258 121 3 26 275 80 335 1.08e-83 254
Msa0854500 AT5G06720.1 48.837 258 121 3 27 275 78 333 7.28e-83 252
Msa0854500 AT4G16270.1 51.751 257 112 4 27 275 96 348 4.48e-82 251
Msa0854500 AT2G35380.1 50.000 262 116 3 27 275 76 335 3.62e-81 248
Msa0854500 AT5G06730.1 49.035 259 119 4 27 275 79 334 4.45e-81 248
Msa0854500 AT4G08770.1 50.000 260 117 4 27 275 70 327 1.65e-77 239
Msa0854500 AT3G32980.1 48.846 260 120 4 27 275 77 334 1.77e-77 239
Msa0854500 AT1G68850.1 43.893 262 134 4 26 275 75 335 6.02e-77 237
Msa0854500 AT5G19890.1 49.231 260 113 6 27 275 76 327 1.23e-76 236
Msa0854500 AT2G35380.2 50.407 246 107 3 43 275 4 247 1.94e-76 233
Msa0854500 AT4G08780.1 48.077 260 122 4 27 275 70 327 3.11e-76 236
Msa0854500 AT1G49570.1 48.031 254 122 3 27 271 94 346 3.25e-75 233
Msa0854500 AT2G38380.1 47.308 260 125 5 26 275 76 333 2.91e-73 228
Msa0854500 AT2G38390.1 46.538 260 127 5 26 275 76 333 5.46e-73 228
Msa0854500 AT3G49120.1 48.077 260 122 4 27 275 78 335 1.22e-72 227
Msa0854500 AT3G49110.1 47.308 260 124 4 27 275 79 336 2.99e-72 226
Msa0854500 AT2G22420.1 45.312 256 128 4 27 275 69 319 4.11e-70 219
Msa0854500 AT5G19880.1 46.743 261 125 4 27 275 71 329 1.46e-68 215
Msa0854500 AT5G64120.1 43.411 258 131 6 25 275 79 328 1.07e-63 203
Msa0854500 AT4G33420.1 45.418 251 129 5 26 275 82 325 1.49e-63 202
Msa0854500 AT4G33420.2 45.418 251 129 5 26 275 129 372 8.45e-63 202
Msa0854500 AT1G05240.1 40.625 256 137 5 26 271 71 321 6.88e-61 196
Msa0854500 AT1G05250.1 40.625 256 137 5 26 271 71 321 6.88e-61 196
Msa0854500 AT3G01190.1 43.023 258 132 6 26 275 71 321 9.37e-61 195
Msa0854500 AT5G15180.1 42.085 259 135 6 26 275 77 329 4.45e-60 194
Msa0854500 AT2G41480.1 43.130 262 130 7 26 275 74 328 4.93e-60 194
Msa0854500 AT5G51890.1 41.245 257 139 5 26 275 71 322 1.52e-59 192
Msa0854500 AT5G42180.1 42.912 261 125 6 26 274 68 316 4.20e-58 188
Msa0854500 AT5G17820.1 40.078 257 135 5 26 275 69 313 5.20e-58 188
Msa0854500 AT5G39580.1 43.191 257 132 7 26 275 70 319 2.28e-57 186
Msa0854500 AT5G17820.2 40.078 257 135 5 26 275 122 366 4.86e-57 187
Msa0854500 AT1G71695.1 41.339 254 142 4 26 275 89 339 1.50e-56 186
Msa0854500 AT5G14130.1 39.535 258 144 4 26 275 77 330 2.75e-56 184
Msa0854500 AT3G03670.1 40.385 260 139 4 26 275 68 321 4.89e-56 183
Msa0854500 AT5G14130.2 39.535 258 144 4 26 275 118 371 9.11e-56 184
Msa0854500 AT4G11290.1 40.769 260 141 6 26 275 70 326 1.64e-55 182
Msa0854500 AT1G05260.1 40.154 259 142 6 26 275 71 325 7.74e-54 177
Msa0854500 AT4G33870.1 34.495 287 145 4 26 271 113 397 1.27e-53 179
Msa0854500 AT5G40150.1 37.154 253 153 4 27 275 78 328 1.19e-52 174
Msa0854500 AT4G37530.1 39.015 264 139 5 27 275 73 329 2.06e-52 174
Msa0854500 AT3G21770.1 38.824 255 143 6 26 271 74 324 1.70e-51 171
Msa0854500 AT1G30870.1 38.078 281 149 7 5 275 80 345 2.51e-51 172
Msa0854500 AT4G30170.1 39.080 261 141 5 26 275 72 325 3.02e-51 171
Msa0854500 AT1G34510.1 38.247 251 146 6 26 275 67 309 3.10e-51 170
Msa0854500 AT4G37520.1 37.500 264 143 5 27 275 73 329 4.23e-51 171
Msa0854500 AT2G18980.1 39.080 261 141 6 26 275 70 323 7.85e-51 170
Msa0854500 AT4G17690.1 38.735 253 151 3 26 275 71 322 8.75e-51 169
Msa0854500 AT5G64110.1 41.154 260 135 7 26 275 79 330 2.03e-50 169
Msa0854500 AT5G64100.1 39.615 260 137 7 26 275 82 331 1.03e-49 167
Msa0854500 AT5G67400.1 37.308 260 149 5 27 275 73 329 1.44e-49 166
Msa0854500 AT2G34060.1 40.310 258 142 5 26 272 87 343 1.87e-49 167
Msa0854500 AT3G28200.1 36.220 254 153 4 27 275 67 316 2.04e-49 166
Msa0854500 AT4G37520.2 37.121 264 141 6 27 275 73 326 6.66e-49 165
Msa0854500 AT2G43480.1 36.782 261 145 6 27 275 83 335 6.95e-49 165
Msa0854500 AT4G25980.1 36.122 263 148 7 26 275 71 326 7.33e-49 164
Msa0854500 AT5G47000.1 37.647 255 154 3 25 275 77 330 9.64e-49 164
Msa0854500 AT4G31760.1 37.066 259 148 4 26 275 74 326 1.39e-48 164
Msa0854500 AT2G24800.1 36.680 259 150 3 26 275 76 329 1.41e-48 164
Msa0854500 AT1G77100.1 40.078 257 141 8 26 275 69 319 1.81e-48 163
Msa0854500 AT5G24070.1 36.015 261 147 6 27 275 83 335 3.39e-48 163
Msa0854500 AT4G26010.1 37.450 251 148 5 26 275 67 309 2.61e-47 160
Msa0854500 AT4G26010.2 37.450 251 148 5 26 275 95 337 3.23e-47 160
Msa0854500 AT4G21960.1 33.725 255 165 3 24 275 74 327 7.47e-46 157
Msa0854500 AT3G49960.1 36.154 260 152 6 27 275 73 329 7.53e-46 157
Msa0854500 AT2G37130.2 35.938 256 155 5 26 275 44 296 3.26e-45 154
Msa0854500 AT1G24110.1 35.019 257 157 4 27 275 68 322 4.97e-45 155
Msa0854500 AT2G37130.1 35.938 256 155 5 26 275 75 327 7.63e-45 154
Msa0854500 AT2G39040.1 39.394 264 142 8 26 275 91 350 4.76e-44 153
Msa0854500 AT5G22410.1 36.680 259 143 10 27 273 74 323 6.96e-42 147
Msa0854500 AT4G37530.2 40.376 213 105 5 27 224 73 278 2.08e-41 144
Msa0854500 AT3G17070.2 31.034 261 171 4 23 275 17 276 2.32e-35 128
Msa0854500 AT3G17070.1 31.395 258 168 4 26 275 83 339 2.96e-35 129
Msa0854500 AT5G39580.2 41.420 169 90 4 25 193 69 228 7.33e-32 118
Msa0854500 AT4G25980.2 42.276 123 67 3 26 148 116 234 7.51e-26 103
Msa0854500 AT2G24800.2 42.975 121 65 1 26 146 76 192 2.01e-25 101
Msa0854500 AT3G42570.1 37.363 91 56 1 57 146 57 147 1.57e-13 67.0
Msa0854500 AT4G32320.1 28.333 240 111 6 30 254 126 319 4.09e-13 68.9
Msa0854500 AT4G08390.2 27.805 205 119 6 62 257 176 360 1.95e-12 67.0
Msa0854500 AT4G08390.5 27.805 205 119 6 62 257 176 360 1.95e-12 67.0
Msa0854500 AT4G08390.1 27.805 205 119 6 62 257 176 360 1.95e-12 67.0
Msa0854500 AT4G08390.3 27.805 205 119 6 62 257 175 359 1.98e-12 67.0

Find 78 sgRNAs with CRISPR-Local

Find 156 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCCGACCAACAACTCTTTAA+TGG 0.260720 5_4:+47050060 Msa0854500:CDS
AGGTTCTGGGGACAATAATT+TGG 0.298176 5_4:+47049957 Msa0854500:CDS
GAGAGATAAGAAAGAATTGC+AGG 0.319158 5_4:+47050199 Msa0854500:CDS
TGGACTTTCCACCAAGGATT+TGG 0.319515 5_4:+47049459 Msa0854500:CDS
TGCCCCAAGACATCAGGTTC+TGG 0.322210 5_4:+47049943 Msa0854500:CDS
TTGAGGCTTGAAGTGGGTGC+TGG 0.334026 5_4:-47049409 None:intergenic
CAAGTTTCACATCCCATGTT+GGG 0.349153 5_4:-47049336 None:intergenic
ATCTCAAGGTTTAATGCTCT+TGG 0.358777 5_4:+47049439 Msa0854500:CDS
GTCCCCAGAACCTGATGTCT+TGG 0.382377 5_4:-47049947 None:intergenic
TTTGCTCGCACAAGGCAATC+AGG 0.386172 5_4:+47049919 Msa0854500:CDS
GGAGTGGAGTAGTCCCTTAC+TGG 0.391124 5_4:-47050040 None:intergenic
AAGGATTTGGTCGCATTGTC+TGG 0.403525 5_4:+47049472 Msa0854500:CDS
TGCCAATCCCAACAGAAATT+CGG 0.407832 5_4:+47048969 Msa0854500:CDS
TCCCCAGAACCTGATGTCTT+GGG 0.408844 5_4:-47049946 None:intergenic
ATTCTAAGTGTGACTGTTGA+AGG 0.412052 5_4:+47050391 Msa0854500:three_prime_UTR
AAACTAGGTGGTCACACAAT+TGG 0.431483 5_4:+47049835 Msa0854500:intron
ATCCACCATTAAAGAGTTGT+TGG 0.434063 5_4:-47050065 None:intergenic
CAAGAACCTAGTTGCCAGTA+AGG 0.434670 5_4:+47050026 Msa0854500:CDS
TCTTATCTCTCCATTTGAAC+CGG 0.435627 5_4:-47050187 None:intergenic
GCCCCAAGACATCAGGTTCT+GGG 0.444687 5_4:+47049944 Msa0854500:CDS
CCACGGGCCGAATTTCTGTT+GGG 0.448742 5_4:-47048976 None:intergenic
CCAAGTTTCACATCCCATGT+TGG 0.448886 5_4:-47049337 None:intergenic
TGAGGCTTGAAGTGGGTGCT+GGG 0.458400 5_4:-47049408 None:intergenic
GGCCGAATTTCTGTTGGGAT+TGG 0.459419 5_4:-47048971 None:intergenic
AGTCCCCTCACCGGTTCAAA+TGG 0.471090 5_4:+47050177 Msa0854500:CDS
CATTAAACCTTGAGATGAGT+TGG 0.479053 5_4:-47049432 None:intergenic
CTCTCCATTTGAACCGGTGA+GGG 0.479821 5_4:-47050181 None:intergenic
GCTTAAATTTCCCAGCTTGG+AGG 0.480636 5_4:+47049313 Msa0854500:intron
TCAGGGTGCCCCAAGACATC+AGG 0.480815 5_4:+47049937 Msa0854500:CDS
ATGTTGGTGTTGCAAGATCA+AGG 0.491081 5_4:-47049984 None:intergenic
CCAACATGGGATGTGAAACT+TGG 0.494973 5_4:+47049337 Msa0854500:CDS
ATATTCGTGCACTGTAGAAT+CGG 0.498334 5_4:-47050091 None:intergenic
TCCACGGGCCGAATTTCTGT+TGG 0.507509 5_4:-47048977 None:intergenic
ACCTTGAGATGAGTTGGTTG+AGG 0.512766 5_4:-47049426 None:intergenic
CCCAGCTTGGAGGCCCAACA+TGG 0.520178 5_4:+47049323 Msa0854500:intron
GTCGATCATTTCGAATCCAC+GGG 0.525093 5_4:-47048992 None:intergenic
AATGTCTCCCATCTTGATCA+TGG 0.525103 5_4:-47050154 None:intergenic
AGCAAAAGAAGTATCTATGT+TGG 0.528285 5_4:-47049902 None:intergenic
AGACAATGCGACCAAATCCT+TGG 0.535960 5_4:-47049470 None:intergenic
GGGTTCTCACTCTCACTCAC+AGG 0.540149 5_4:+47047707 Msa0854500:CDS
GTAGTCCCTTACTGGCAACT+AGG 0.544090 5_4:-47050032 None:intergenic
TCAGCGCATGAAACTGCACC+TGG 0.544091 5_4:-47049045 None:intergenic
TGTCGATCATTTCGAATCCA+CGG 0.546683 5_4:-47048993 None:intergenic
CGTCACCGCCATGATCAAGA+TGG 0.548522 5_4:+47050146 Msa0854500:CDS
TAAAGAGTTGTTGGTCGGAG+TGG 0.549959 5_4:-47050056 None:intergenic
AAACCATTGCAGGGATGTGA+TGG 0.550654 5_4:+47048901 Msa0854500:intron
CCCCAGAACCTGATGTCTTG+GGG 0.554574 5_4:-47049945 None:intergenic
TTGCTCGCACAAGGCAATCA+GGG 0.555042 5_4:+47049920 Msa0854500:CDS
TATTTACATTTAAGTCTGGA+TGG 0.557143 5_4:+47050274 Msa0854500:three_prime_UTR
CTTGAAGTAATGATTGTCAA+AGG 0.565019 5_4:-47050007 None:intergenic
GATGACACATCAAACTTCAC+CGG 0.568289 5_4:+47048937 Msa0854500:CDS
CAATGCGACCAAATCCTTGG+TGG 0.568698 5_4:-47049467 None:intergenic
AACAGAGTCTCTAGCAGCGA+TGG 0.571209 5_4:-47049076 None:intergenic
GCCTCAACCAACTCATCTCA+AGG 0.573068 5_4:+47049425 Msa0854500:CDS
ACCATTAAAGAGTTGTTGGT+CGG 0.578153 5_4:-47050061 None:intergenic
TAATGATTGTCAAAGGATGT+TGG 0.578183 5_4:-47050000 None:intergenic
CCCAACAGAAATTCGGCCCG+TGG 0.584922 5_4:+47048976 Msa0854500:CDS
AGTCTCTAGCAGCGATGGCG+AGG 0.587381 5_4:-47049071 None:intergenic
GAGTTGGTTGAGGCTTGAAG+TGG 0.587942 5_4:-47049416 None:intergenic
GTCACCGCCATGATCAAGAT+GGG 0.592934 5_4:+47050147 Msa0854500:CDS
CCAGCTTGGAGGCCCAACAT+GGG 0.607919 5_4:+47049324 Msa0854500:intron
CGACAAAATCAAATCAGCAG+TGG 0.609985 5_4:+47049011 Msa0854500:CDS
AAGAACCTAGTTGCCAGTAA+GGG 0.610951 5_4:+47050027 Msa0854500:CDS
AGTAAATCAGCTGCAAACAA+TGG 0.614802 5_4:+47049382 Msa0854500:CDS
AGTTGGTTGAGGCTTGAAGT+GGG 0.615516 5_4:-47049415 None:intergenic
GACCAACAACTCTTTAATGG+TGG 0.622816 5_4:+47050063 Msa0854500:CDS
CCCCAAGACATCAGGTTCTG+GGG 0.624449 5_4:+47049945 Msa0854500:CDS
TCTCTCCATTTGAACCGGTG+AGG 0.624609 5_4:-47050182 None:intergenic
TGTTGGAGTCATTGTAAATG+TGG 0.627624 5_4:-47049885 None:intergenic
GGAGACATTAGTCCCCTCAC+CGG 0.627716 5_4:+47050168 Msa0854500:CDS
GCAGTGGAGAAAGTATGCCC+AGG 0.632475 5_4:+47049027 Msa0854500:CDS
TCTCCATTTGAACCGGTGAG+GGG 0.638254 5_4:-47050180 None:intergenic
TGCTCTTGGACTTTCCACCA+AGG 0.642254 5_4:+47049453 Msa0854500:CDS
TGTTGGTGTTGCAAGATCAA+GGG 0.658818 5_4:-47049983 None:intergenic
GTTGGTGTTGCAAGATCAAG+GGG 0.659244 5_4:-47049982 None:intergenic
CAGCGCATGAAACTGCACCT+GGG 0.668942 5_4:-47049044 None:intergenic
CATGGCGGTGACGAAATCAG+AGG 0.705431 5_4:-47050136 None:intergenic
GTCTCCCATCTTGATCATGG+CGG 0.710146 5_4:-47050151 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAAATATTAATTTGAAATGT+GGG + chr5_4:47048025-47048044 Msa0854500:intron 10.0%
!!! TATTTAGTTTAATTAGATTA+AGG + chr5_4:47048408-47048427 Msa0854500:intron 10.0%
!! TTATTGTAACAAAAAAAAAA+GGG - chr5_4:47048633-47048652 None:intergenic 10.0%
!! ATTATTGTAACAAAAAAAAA+AGG - chr5_4:47048634-47048653 None:intergenic 10.0%
!!! TAATAATAGTCATTTTTTTA+GGG - chr5_4:47048815-47048834 None:intergenic 10.0%
!!! ATAATAATAGTCATTTTTTT+AGG - chr5_4:47048816-47048835 None:intergenic 10.0%
!!! TAAGTTCATAGTTTAAAATT+TGG + chr5_4:47047918-47047937 Msa0854500:intron 15.0%
!!! AAGTTCATAGTTTAAAATTT+GGG + chr5_4:47047919-47047938 Msa0854500:intron 15.0%
!!! TTTTAAACAATCATGTAATT+TGG + chr5_4:47047974-47047993 Msa0854500:intron 15.0%
!! TTTAAACAATCATGTAATTT+GGG + chr5_4:47047975-47047994 Msa0854500:intron 15.0%
!!! CAAAATATTAATTTGAAATG+TGG + chr5_4:47048024-47048043 Msa0854500:intron 15.0%
!! TAAAAAATTAATGTGATCAT+AGG + chr5_4:47048684-47048703 Msa0854500:intron 15.0%
!! ATCATAATAATAGTCATATT+TGG - chr5_4:47048791-47048810 None:intergenic 15.0%
!!! AATAATAGTCATTTTTTTAG+GGG - chr5_4:47048814-47048833 None:intergenic 15.0%
!!! TTTATTCTCTAAAATGTATA+GGG - chr5_4:47049183-47049202 None:intergenic 15.0%
!!! TTTTAAATGATACTTAAACT+AGG + chr5_4:47049820-47049839 Msa0854500:intron 15.0%
!!! TAACCATTTTAATTTTTTGT+TGG + chr5_4:47050231-47050250 Msa0854500:exon 15.0%
!!! TTTTTATTTACATTTAAGTC+TGG + chr5_4:47050270-47050289 Msa0854500:three_prime_UTR 15.0%
!!! TTCTTTGTATTTTATTTTGT+TGG + chr5_4:47050322-47050341 Msa0854500:three_prime_UTR 15.0%
!!! TTTTTGTATAATTGTTGTTG+TGG + chr5_4:47047760-47047779 Msa0854500:intron 20.0%
!! AACAATGAACAAAAATTGAA+GGG - chr5_4:47047803-47047822 None:intergenic 20.0%
!! TAACAATGAACAAAAATTGA+AGG - chr5_4:47047804-47047823 None:intergenic 20.0%
!!! TCAATTTTTGTTCATTGTTA+AGG + chr5_4:47047804-47047823 Msa0854500:intron 20.0%
!!! TTGATGGATGATTAATAATT+TGG + chr5_4:47047857-47047876 Msa0854500:intron 20.0%
!! AGTTCATTGTTTAAAGATTT+AGG + chr5_4:47048061-47048080 Msa0854500:intron 20.0%
!! ATTGAAATCTTAACAATGAA+CGG - chr5_4:47048138-47048157 None:intergenic 20.0%
!!! AAAGTTTTGAATAACTTACT+GGG - chr5_4:47048197-47048216 None:intergenic 20.0%
!!! AAAAGTTTTGAATAACTTAC+TGG - chr5_4:47048198-47048217 None:intergenic 20.0%
!!! TTTTTAATATGTGATTGACT+TGG + chr5_4:47048520-47048539 Msa0854500:intron 20.0%
!!! TTTTAATATGTGATTGACTT+GGG + chr5_4:47048521-47048540 Msa0854500:intron 20.0%
!!! TGATTATTATGATGCAATTT+TGG - chr5_4:47049119-47049138 None:intergenic 20.0%
!!! CTTTATTCTCTAAAATGTAT+AGG - chr5_4:47049184-47049203 None:intergenic 20.0%
!! TTTATATTTGTATTCACTCA+CGG - chr5_4:47049263-47049282 None:intergenic 20.0%
!! AATAGAATAGATGTATATGT+GGG - chr5_4:47049518-47049537 None:intergenic 20.0%
!! TAAGTCAATTTGTCAATAAT+TGG + chr5_4:47049541-47049560 Msa0854500:intron 20.0%
!! ATGAGTGGAAATTATTATTA+AGG + chr5_4:47049621-47049640 Msa0854500:intron 20.0%
!! TGAGTGGAAATTATTATTAA+GGG + chr5_4:47049622-47049641 Msa0854500:intron 20.0%
!! AATAAAAAGATACATGCATT+TGG - chr5_4:47050258-47050277 None:intergenic 20.0%
! TTTGTTCATTGTTAAGGATT+TGG + chr5_4:47047810-47047829 Msa0854500:intron 25.0%
! TTGTTCATTGTTAAGGATTT+GGG + chr5_4:47047811-47047830 Msa0854500:intron 25.0%
! ACTATGGATGATTAATACAT+CGG + chr5_4:47047998-47048017 Msa0854500:intron 25.0%
!! TATTAATTTGAAATGTGGGT+TGG + chr5_4:47048029-47048048 Msa0854500:intron 25.0%
! AATTAATGTGATCATAGGAT+TGG + chr5_4:47048689-47048708 Msa0854500:intron 25.0%
!!! TGAGAGAGTATTATTTTCTA+TGG + chr5_4:47048841-47048860 Msa0854500:intron 25.0%
!! TTATTATGATGCAATTTTGG+TGG - chr5_4:47049116-47049135 None:intergenic 25.0%
! CAATAGAATAGATGTATATG+TGG - chr5_4:47049519-47049538 None:intergenic 25.0%
! TAAATGATACTTAAACTAGG+TGG + chr5_4:47049823-47049842 Msa0854500:intron 25.0%
! GGTCCAACAAAAAATTAAAA+TGG - chr5_4:47050237-47050256 None:intergenic 25.0%
! TATTTACATTTAAGTCTGGA+TGG + chr5_4:47050274-47050293 Msa0854500:three_prime_UTR 25.0%
TTGGGAAATGAAGAGTAAAT+TGG + chr5_4:47047829-47047848 Msa0854500:intron 30.0%
GAGTAAATTGGAATTGTTGA+TGG + chr5_4:47047841-47047860 Msa0854500:intron 30.0%
! AATCATGTAATTTGGGACTA+TGG + chr5_4:47047982-47048001 Msa0854500:intron 30.0%
TTCTAAGTAGCTGAAATATG+TGG + chr5_4:47048091-47048110 Msa0854500:intron 30.0%
TCTAAGTAGCTGAAATATGT+GGG + chr5_4:47048092-47048111 Msa0854500:intron 30.0%
CTGAATTCAAAACTGAAATG+TGG + chr5_4:47048239-47048258 Msa0854500:intron 30.0%
TTGAAGATGCTTGAATTACT+GGG + chr5_4:47048273-47048292 Msa0854500:intron 30.0%
CTTCAAAATGCTAAAAAGAG+AGG - chr5_4:47048311-47048330 None:intergenic 30.0%
ACTTGTTTATTGTGTAGCAA+TGG + chr5_4:47048493-47048512 Msa0854500:intron 30.0%
!!! TGCAATTTTAGTTCAAACTG+TGG + chr5_4:47048596-47048615 Msa0854500:intron 30.0%
!!! AATTTTAGTTCAAACTGTGG+TGG + chr5_4:47048599-47048618 Msa0854500:intron 30.0%
! CTATGGACTATACAATTCAT+TGG + chr5_4:47048858-47048877 Msa0854500:intron 30.0%
TTGAATAAACAAACCATTGC+AGG + chr5_4:47048891-47048910 Msa0854500:intron 30.0%
TGAATAAACAAACCATTGCA+GGG + chr5_4:47048892-47048911 Msa0854500:intron 30.0%
! AGAGAAATTGATAACATGAG+TGG + chr5_4:47049606-47049625 Msa0854500:intron 30.0%
TTCCTTTATGTTTCATTGCT+TGG + chr5_4:47049783-47049802 Msa0854500:intron 30.0%
TCCTTTATGTTTCATTGCTT+GGG + chr5_4:47049784-47049803 Msa0854500:intron 30.0%
!! AGCAAAAGAAGTATCTATGT+TGG - chr5_4:47049905-47049924 None:intergenic 30.0%
TAATGATTGTCAAAGGATGT+TGG - chr5_4:47050003-47050022 None:intergenic 30.0%
CTTGAAGTAATGATTGTCAA+AGG - chr5_4:47050010-47050029 None:intergenic 30.0%
! TTTCACAGATTTTCATTCGC+TGG + chr5_4:47047686-47047705 Msa0854500:CDS 35.0%
! TTCACAGATTTTCATTCGCT+GGG + chr5_4:47047687-47047706 Msa0854500:CDS 35.0%
GTTGAAGATGCTTGAATTAC+TGG + chr5_4:47048272-47048291 Msa0854500:intron 35.0%
AAAAGCAAGTAGCATCAAAG+AGG - chr5_4:47048661-47048680 None:intergenic 35.0%
TATGCTTAAATTTCCCAGCT+TGG + chr5_4:47049310-47049329 Msa0854500:intron 35.0%
AGTAAATCAGCTGCAAACAA+TGG + chr5_4:47049382-47049401 Msa0854500:CDS 35.0%
CATTAAACCTTGAGATGAGT+TGG - chr5_4:47049435-47049454 None:intergenic 35.0%
ATCTCAAGGTTTAATGCTCT+TGG + chr5_4:47049439-47049458 Msa0854500:CDS 35.0%
CCTTTATGTTTCATTGCTTG+GGG + chr5_4:47049785-47049804 Msa0854500:intron 35.0%
TGTTGGAGTCATTGTAAATG+TGG - chr5_4:47049888-47049907 None:intergenic 35.0%
ACCATTAAAGAGTTGTTGGT+CGG - chr5_4:47050064-47050083 None:intergenic 35.0%
ATCCACCATTAAAGAGTTGT+TGG - chr5_4:47050068-47050087 None:intergenic 35.0%
ATATTCGTGCACTGTAGAAT+CGG - chr5_4:47050094-47050113 None:intergenic 35.0%
AAATCAGAGGAAAAAGAGCT+TGG - chr5_4:47050126-47050145 None:intergenic 35.0%
TCTTATCTCTCCATTTGAAC+CGG - chr5_4:47050190-47050209 None:intergenic 35.0%
GAGAGATAAGAAAGAATTGC+AGG + chr5_4:47050199-47050218 Msa0854500:CDS 35.0%
GATGACACATCAAACTTCAC+CGG + chr5_4:47048937-47048956 Msa0854500:CDS 40.0%
TGCCAATCCCAACAGAAATT+CGG + chr5_4:47048969-47048988 Msa0854500:CDS 40.0%
TGTCGATCATTTCGAATCCA+CGG - chr5_4:47048996-47049015 None:intergenic 40.0%
CGACAAAATCAAATCAGCAG+TGG + chr5_4:47049011-47049030 Msa0854500:CDS 40.0%
CAAGTTTCACATCCCATGTT+GGG - chr5_4:47049339-47049358 None:intergenic 40.0%
CCCCAAGCAATGAAACATAA+AGG - chr5_4:47049788-47049807 None:intergenic 40.0%
AAACTAGGTGGTCACACAAT+TGG + chr5_4:47049835-47049854 Msa0854500:intron 40.0%
! ATACTTCTTTTGCTCGCACA+AGG + chr5_4:47049911-47049930 Msa0854500:CDS 40.0%
!! AGGTTCTGGGGACAATAATT+TGG + chr5_4:47049957-47049976 Msa0854500:CDS 40.0%
!! TGTTGGTGTTGCAAGATCAA+GGG - chr5_4:47049986-47050005 None:intergenic 40.0%
!! ATGTTGGTGTTGCAAGATCA+AGG - chr5_4:47049987-47050006 None:intergenic 40.0%
AAGAACCTAGTTGCCAGTAA+GGG + chr5_4:47050027-47050046 Msa0854500:CDS 40.0%
TCCGACCAACAACTCTTTAA+TGG + chr5_4:47050060-47050079 Msa0854500:CDS 40.0%
GACCAACAACTCTTTAATGG+TGG + chr5_4:47050063-47050082 Msa0854500:CDS 40.0%
AATGTCTCCCATCTTGATCA+TGG - chr5_4:47050157-47050176 None:intergenic 40.0%
GCAAGTAGCATCAAAGAGGT+TGG - chr5_4:47048657-47048676 None:intergenic 45.0%
AAACCATTGCAGGGATGTGA+TGG + chr5_4:47048901-47048920 Msa0854500:intron 45.0%
GTCGATCATTTCGAATCCAC+GGG - chr5_4:47048995-47049014 None:intergenic 45.0%
GCTTAAATTTCCCAGCTTGG+AGG + chr5_4:47049313-47049332 Msa0854500:intron 45.0%
CCAAGTTTCACATCCCATGT+TGG - chr5_4:47049340-47049359 None:intergenic 45.0%
CCAACATGGGATGTGAAACT+TGG + chr5_4:47049337-47049356 Msa0854500:CDS 45.0%
AGTTGGTTGAGGCTTGAAGT+GGG - chr5_4:47049418-47049437 None:intergenic 45.0%
!! ACCTTGAGATGAGTTGGTTG+AGG - chr5_4:47049429-47049448 None:intergenic 45.0%
TGGACTTTCCACCAAGGATT+TGG + chr5_4:47049459-47049478 Msa0854500:CDS 45.0%
AGACAATGCGACCAAATCCT+TGG - chr5_4:47049473-47049492 None:intergenic 45.0%
! AAGGATTTGGTCGCATTGTC+TGG + chr5_4:47049472-47049491 Msa0854500:CDS 45.0%
!! GTTGGTGTTGCAAGATCAAG+GGG - chr5_4:47049985-47050004 None:intergenic 45.0%
CAAGAACCTAGTTGCCAGTA+AGG + chr5_4:47050026-47050045 Msa0854500:CDS 45.0%
TAAAGAGTTGTTGGTCGGAG+TGG - chr5_4:47050059-47050078 None:intergenic 45.0%
GAACCATCACATCCCTGCAA+TGG - chr5_4:47048907-47048926 None:intergenic 50.0%
!! GGGATTGGCAGTTTTCTCTC+CGG - chr5_4:47048959-47048978 None:intergenic 50.0%
GGCCGAATTTCTGTTGGGAT+TGG - chr5_4:47048974-47048993 None:intergenic 50.0%
AACAGAGTCTCTAGCAGCGA+TGG - chr5_4:47049079-47049098 None:intergenic 50.0%
! GAGTTGGTTGAGGCTTGAAG+TGG - chr5_4:47049419-47049438 None:intergenic 50.0%
GCCTCAACCAACTCATCTCA+AGG + chr5_4:47049425-47049444 Msa0854500:CDS 50.0%
TGCTCTTGGACTTTCCACCA+AGG + chr5_4:47049453-47049472 Msa0854500:CDS 50.0%
CAATGCGACCAAATCCTTGG+TGG - chr5_4:47049470-47049489 None:intergenic 50.0%
TTTGCTCGCACAAGGCAATC+AGG + chr5_4:47049919-47049938 Msa0854500:CDS 50.0%
TTGCTCGCACAAGGCAATCA+GGG + chr5_4:47049920-47049939 Msa0854500:CDS 50.0%
TCCCCAGAACCTGATGTCTT+GGG - chr5_4:47049949-47049968 None:intergenic 50.0%
GTAGTCCCTTACTGGCAACT+AGG - chr5_4:47050035-47050054 None:intergenic 50.0%
GTCACCGCCATGATCAAGAT+GGG + chr5_4:47050147-47050166 Msa0854500:CDS 50.0%
GTCTCCCATCTTGATCATGG+CGG - chr5_4:47050154-47050173 None:intergenic 50.0%
TCTCCATTTGAACCGGTGAG+GGG - chr5_4:47050183-47050202 None:intergenic 50.0%
CTCTCCATTTGAACCGGTGA+GGG - chr5_4:47050184-47050203 None:intergenic 50.0%
TCTCTCCATTTGAACCGGTG+AGG - chr5_4:47050185-47050204 None:intergenic 50.0%
GGGTTCTCACTCTCACTCAC+AGG + chr5_4:47047707-47047726 Msa0854500:CDS 55.0%
CCACGGGCCGAATTTCTGTT+GGG - chr5_4:47048979-47048998 None:intergenic 55.0%
TCCACGGGCCGAATTTCTGT+TGG - chr5_4:47048980-47048999 None:intergenic 55.0%
! GCAGTGGAGAAAGTATGCCC+AGG + chr5_4:47049027-47049046 Msa0854500:CDS 55.0%
CAGCGCATGAAACTGCACCT+GGG - chr5_4:47049047-47049066 None:intergenic 55.0%
TCAGCGCATGAAACTGCACC+TGG - chr5_4:47049048-47049067 None:intergenic 55.0%
TGAGGCTTGAAGTGGGTGCT+GGG - chr5_4:47049411-47049430 None:intergenic 55.0%
TTGAGGCTTGAAGTGGGTGC+TGG - chr5_4:47049412-47049431 None:intergenic 55.0%
TGCCCCAAGACATCAGGTTC+TGG + chr5_4:47049943-47049962 Msa0854500:CDS 55.0%
GCCCCAAGACATCAGGTTCT+GGG + chr5_4:47049944-47049963 Msa0854500:CDS 55.0%
CCCCAGAACCTGATGTCTTG+GGG - chr5_4:47049948-47049967 None:intergenic 55.0%
CCCCAAGACATCAGGTTCTG+GGG + chr5_4:47049945-47049964 Msa0854500:CDS 55.0%
GTCCCCAGAACCTGATGTCT+TGG - chr5_4:47049950-47049969 None:intergenic 55.0%
GGAGTGGAGTAGTCCCTTAC+TGG - chr5_4:47050043-47050062 None:intergenic 55.0%
CATGGCGGTGACGAAATCAG+AGG - chr5_4:47050139-47050158 None:intergenic 55.0%
CGTCACCGCCATGATCAAGA+TGG + chr5_4:47050146-47050165 Msa0854500:CDS 55.0%
GGAGACATTAGTCCCCTCAC+CGG + chr5_4:47050168-47050187 Msa0854500:CDS 55.0%
!! AGTCCCCTCACCGGTTCAAA+TGG + chr5_4:47050177-47050196 Msa0854500:CDS 55.0%
CCCAACAGAAATTCGGCCCG+TGG + chr5_4:47048976-47048995 Msa0854500:CDS 60.0%
AGTCTCTAGCAGCGATGGCG+AGG - chr5_4:47049074-47049093 None:intergenic 60.0%
CCATGTTGGGCCTCCAAGCT+GGG - chr5_4:47049326-47049345 None:intergenic 60.0%
CCAGCTTGGAGGCCCAACAT+GGG + chr5_4:47049324-47049343 Msa0854500:intron 60.0%
! TCAGGGTGCCCCAAGACATC+AGG + chr5_4:47049937-47049956 Msa0854500:CDS 60.0%
CCCAGCTTGGAGGCCCAACA+TGG + chr5_4:47049323-47049342 Msa0854500:intron 65.0%
CCCATGTTGGGCCTCCAAGC+TGG - chr5_4:47049327-47049346 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr5_4 gene 47047659 47050413 47047659 ID=Msa0854500;Name=Msa0854500
chr5_4 mRNA 47047659 47050413 47047659 ID=Msa0854500-mRNA-1;Parent=Msa0854500;Name=Msa0854500-mRNA-1;_AED=0.14;_eAED=0.14;_QI=0|1|0.75|1|1|0.75|4|180|275
chr5_4 exon 47047659 47047736 47047659 ID=Msa0854500-mRNA-1:exon:14882;Parent=Msa0854500-mRNA-1
chr5_4 exon 47048913 47049104 47048913 ID=Msa0854500-mRNA-1:exon:14883;Parent=Msa0854500-mRNA-1
chr5_4 exon 47049328 47049493 47049328 ID=Msa0854500-mRNA-1:exon:14884;Parent=Msa0854500-mRNA-1
chr5_4 exon 47049842 47050413 47049842 ID=Msa0854500-mRNA-1:exon:14885;Parent=Msa0854500-mRNA-1
chr5_4 CDS 47047659 47047736 47047659 ID=Msa0854500-mRNA-1:cds;Parent=Msa0854500-mRNA-1
chr5_4 CDS 47048913 47049104 47048913 ID=Msa0854500-mRNA-1:cds;Parent=Msa0854500-mRNA-1
chr5_4 CDS 47049328 47049493 47049328 ID=Msa0854500-mRNA-1:cds;Parent=Msa0854500-mRNA-1
chr5_4 CDS 47049842 47050233 47049842 ID=Msa0854500-mRNA-1:cds;Parent=Msa0854500-mRNA-1
chr5_4 three_prime_UTR 47050234 47050413 47050234 ID=Msa0854500-mRNA-1:three_prime_utr;Parent=Msa0854500-mRNA-1
Gene Sequence

>Msa0854500

TTGTGTTTTCATTCGCTGGGTTCTCAATTTCACAGATTTTCATTCGCTGGGTTCTCACTCTCACTCACAGGTTTTCAAGGATGTGATGGTTCAATTCTTCTCGATGACACATCAAACTTCACCGGAGAGAAAACTGCCAATCCCAACAGAAATTCGGCCCGTGGATTCGAAATGATCGACAAAATCAAATCAGCAGTGGAGAAAGTATGCCCAGGTGCAGTTTCATGCGCTGATATCCTCGCCATCGCTGCTAGAGACTCTGTTGAGATCCTTGGAGGCCCAACATGGGATGTGAAACTTGGAAGAAGAGATGCTAGAACAGCTAGTAAATCAGCTGCAAACAATGGCATCCCAGCACCCACTTCAAGCCTCAACCAACTCATCTCAAGGTTTAATGCTCTTGGACTTTCCACCAAGGATTTGGTCGCATTGTCTGGTGGTCACACAATTGGACAAACAAGATGCACTACATTTAGAGACCACATTTACAATGACTCCAACATAGATACTTCTTTTGCTCGCACAAGGCAATCAGGGTGCCCCAAGACATCAGGTTCTGGGGACAATAATTTGGCACCCCTTGATCTTGCAACACCAACATCCTTTGACAATCATTACTTCAAGAACCTAGTTGCCAGTAAGGGACTACTCCACTCCGACCAACAACTCTTTAATGGTGGATCTACCGATTCTACAGTGCACGAATATAGCTTGTATCCAAGCTCTTTTTCCTCTGATTTCGTCACCGCCATGATCAAGATGGGAGACATTAGTCCCCTCACCGGTTCAAATGGAGAGATAAGAAAGAATTGCAGGAGTGTGAATTAA
Protein sequence

>Msa0854500

LCFHSLGSQFHRFSFAGFSLSLTGFQGCDGSILLDDTSNFTGEKTANPNRNSARGFEMIDKIKSAVEKVCPGAVSCADILAIAARDSVEILGGPTWDVKLGRRDARTASKSAANNGIPAPTSSLNQLISRFNALGLSTKDLVALSGGHTIGQTRCTTFRDHIYNDSNIDTSFARTRQSGCPKTSGSGDNNLAPLDLATPTSFDNHYFKNLVASKGLLHSDQQLFNGGSTDSTVHEYSLYPSSFSSDFVTAMIKMGDISPLTGSNGEIRKNCRSVN*