AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0588040

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0588040 MtrunA17_Chr4g0004071 88.889 171 17 2 1 170 145 314 4.80e-111 318
Msa0588040 MtrunA17_Chr4g0004061 83.041 171 28 1 1 170 145 315 2.22e-103 299
Msa0588040 MtrunA17_Chr7g0256741 40.341 176 94 7 1 170 146 316 1.20e-39 136
Msa0588040 MtrunA17_Chr1g0148781 44.304 158 79 5 1 152 150 304 1.10e-37 131
Msa0588040 MtrunA17_Chr3g0138351 40.000 160 89 6 1 155 146 303 3.10e-35 125
Msa0588040 MtrunA17_Chr4g0009541 38.854 157 89 5 1 152 144 298 2.92e-34 122
Msa0588040 MtrunA17_Chr4g0009561 40.426 141 80 4 14 152 163 301 6.04e-34 121
Msa0588040 MtrunA17_Chr8g0348951 35.359 181 104 6 1 170 139 317 5.71e-26 100
Msa0588040 MtrunA17_Chr8g0351101 32.927 164 107 3 5 167 201 362 2.06e-24 97.4
Msa0588040 MtrunA17_Chr8g0345831 34.615 156 99 3 2 156 177 330 4.04e-24 96.3
Msa0588040 MtrunA17_Chr7g0247741 33.121 157 99 3 1 152 140 295 2.61e-23 93.6
Msa0588040 MtrunA17_Chr5g0420721 35.583 163 101 4 4 164 85 245 3.63e-23 92.4
Msa0588040 MtrunA17_Chr7g0233661 35.252 139 82 3 11 149 7 137 3.02e-22 87.4
Msa0588040 MtrunA17_Chr5g0394071 33.775 151 89 6 1 149 22 163 3.45e-22 88.2
Msa0588040 MtrunA17_Chr5g0412651 37.692 130 77 3 31 158 207 334 6.16e-22 90.5
Msa0588040 MtrunA17_Chr5g0412681 36.220 127 77 3 31 155 194 318 4.97e-21 87.8
Msa0588040 MtrunA17_Chr7g0265221 34.118 170 95 5 2 157 202 368 5.25e-21 88.2
Msa0588040 MtrunA17_Chr1g0184121 29.762 168 115 3 1 167 172 337 8.44e-21 87.4
Msa0588040 MtrunA17_Chr4g0037611 33.775 151 90 5 1 149 11 153 9.44e-21 84.3
Msa0588040 MtrunA17_Chr1g0204181 35.570 149 93 3 5 152 207 353 9.74e-21 87.4
Msa0588040 MtrunA17_Chr4g0045441 33.553 152 98 3 1 150 177 327 1.44e-20 86.7
Msa0588040 MtrunA17_Chr8g0370711 34.459 148 88 6 23 167 211 352 1.81e-20 86.7
Msa0588040 MtrunA17_Chr6g0474391 32.317 164 108 3 5 167 212 373 2.78e-20 86.3
Msa0588040 MtrunA17_Chr1g0184151 29.114 158 110 2 1 158 173 328 3.23e-20 85.5
Msa0588040 MtrunA17_Chr7g0250511 31.737 167 111 3 1 166 184 348 5.58e-20 85.1
Msa0588040 MtrunA17_Chr1g0184111 31.013 158 105 4 1 156 172 327 1.11e-19 84.3
Msa0588040 MtrunA17_Chr1g0162361 31.724 145 96 3 6 149 176 318 1.29e-19 84.0
Msa0588040 MtrunA17_Chr1g0184161 31.507 146 98 2 4 149 176 319 2.02e-19 83.6
Msa0588040 MtrunA17_Chr5g0407731 35.503 169 91 6 2 157 161 324 2.70e-19 83.2
Msa0588040 MtrunA17_Chr4g0045471 32.680 153 99 3 1 150 177 328 2.97e-19 83.2
Msa0588040 MtrunA17_Chr5g0412671 35.385 130 80 3 31 158 207 334 3.52e-19 82.8
Msa0588040 MtrunA17_Chr7g0239101 32.121 165 104 4 2 160 185 347 6.22e-19 82.4
Msa0588040 MtrunA17_Chr5g0421041 33.333 159 102 4 4 160 181 337 6.50e-19 82.0
Msa0588040 MtrunA17_Chr3g0128001 32.278 158 103 4 2 157 170 325 1.15e-18 81.3
Msa0588040 MtrunA17_Chr8g0384461 34.783 115 73 2 38 152 227 339 1.19e-18 81.6
Msa0588040 MtrunA17_Chr5g0424201 32.051 156 97 3 2 150 174 327 1.28e-18 81.3
Msa0588040 MtrunA17_Chr8g0370721 30.952 168 107 6 3 167 191 352 1.40e-18 81.3
Msa0588040 MtrunA17_Chr5g0407781 36.364 132 80 4 22 151 150 279 1.56e-18 80.5
Msa0588040 MtrunA17_Chr5g0423191 34.286 140 89 3 22 160 202 339 1.82e-18 80.9
Msa0588040 MtrunA17_Chr4g0045431 31.579 152 101 3 1 150 177 327 2.94e-18 80.5
Msa0588040 MtrunA17_Chr1g0162351 29.605 152 104 3 1 150 222 372 3.91e-18 80.5
Msa0588040 MtrunA17_Chr3g0130391 28.859 149 103 3 5 152 214 360 6.15e-18 79.7
Msa0588040 MtrunA17_Chr6g0463821 48.649 74 36 2 20 92 72 144 9.10e-18 76.3
Msa0588040 MtrunA17_Chr5g0423251 31.757 148 98 3 14 160 194 339 9.86e-18 79.0
Msa0588040 MtrunA17_Chr1g0184101 35.938 128 79 3 31 158 204 328 1.12e-17 78.6
Msa0588040 MtrunA17_Chr1g0191201 32.308 130 86 2 23 152 220 347 1.12e-17 79.0
Msa0588040 MtrunA17_Chr5g0423211 37.984 129 76 4 23 150 206 331 1.18e-17 78.6
Msa0588040 MtrunA17_Chr5g0420881 36.364 132 80 4 26 155 1 130 1.26e-17 75.1
Msa0588040 MtrunA17_Chr4g0064781 32.624 141 90 4 5 142 185 323 1.44e-17 78.6
Msa0588040 MtrunA17_Chr3g0145171 31.034 145 95 4 2 143 188 330 1.54e-17 78.6
Msa0588040 MtrunA17_Chr1g0194321 32.258 124 83 1 32 155 197 319 2.26e-17 77.8
Msa0588040 MtrunA17_Chr2g0319491 31.655 139 87 3 11 149 175 305 3.16e-17 77.4
Msa0588040 MtrunA17_Chr1g0162321 28.947 152 105 3 1 150 222 372 3.25e-17 77.8
Msa0588040 MtrunA17_Chr7g0242551 32.450 151 99 3 17 166 211 359 3.97e-17 77.4
Msa0588040 MtrunA17_Chr2g0332191 32.353 136 87 2 23 154 208 342 4.69e-17 77.0
Msa0588040 MtrunA17_Chr7g0239111 32.353 136 89 3 23 157 211 344 5.54e-17 77.0
Msa0588040 MtrunA17_Chr1g0179801 30.675 163 104 5 2 157 201 361 8.90e-17 76.3
Msa0588040 MtrunA17_Chr7g0220011 34.177 158 99 5 1 156 171 325 9.38e-17 75.9
Msa0588040 MtrunA17_Chr8g0375701 36.486 148 91 3 10 156 197 342 1.05e-16 76.3
Msa0588040 MtrunA17_Chr3g0125421 29.231 130 90 2 23 152 203 330 1.33e-16 75.9
Msa0588040 MtrunA17_Chr5g0421101 36.719 128 78 3 38 164 218 343 1.34e-16 75.9
Msa0588040 MtrunA17_Chr4g0006371 31.034 145 97 3 23 166 225 367 1.45e-16 75.9
Msa0588040 MtrunA17_Chr3g0093761 34.109 129 81 4 39 165 223 349 1.45e-16 75.9
Msa0588040 MtrunA17_Chr5g0421011 33.108 148 96 3 14 160 194 339 1.62e-16 75.5
Msa0588040 MtrunA17_Chr4g0045461 32.000 150 101 1 1 149 176 325 1.73e-16 75.5
Msa0588040 MtrunA17_Chr3g0126761 32.895 152 96 4 2 150 65 213 1.75e-16 73.9
Msa0588040 MtrunA17_Chr2g0293931 34.483 116 74 2 37 151 73 187 2.42e-16 73.2
Msa0588040 MtrunA17_Chr5g0420901 36.029 136 83 4 23 156 202 335 2.64e-16 75.1
Msa0588040 MtrunA17_Chr3g0109041 27.811 169 115 4 1 164 181 347 2.76e-16 75.1
Msa0588040 MtrunA17_Chr8g0371921 31.056 161 107 4 4 162 178 336 3.29e-16 74.7
Msa0588040 MtrunA17_Chr3g0093741 33.333 129 82 4 39 165 224 350 4.18e-16 74.3
Msa0588040 MtrunA17_Chr8g0384481 29.341 167 114 4 5 169 203 367 4.30e-16 74.3
Msa0588040 MtrunA17_Chr5g0423201 31.081 148 99 3 14 160 195 340 4.88e-16 74.3
Msa0588040 MtrunA17_Chr4g0068891 34.211 114 74 1 38 151 191 303 6.85e-16 73.6
Msa0588040 MtrunA17_Chr5g0423221 32.168 143 94 3 23 164 228 368 9.06e-16 73.6
Msa0588040 MtrunA17_Chr4g0050031 31.169 154 100 5 2 151 197 348 9.20e-16 73.6
Msa0588040 MtrunA17_Chr1g0162191 34.437 151 95 4 1 149 182 330 1.09e-15 73.2
Msa0588040 MtrunA17_Chr4g0045451 32.237 152 100 3 1 150 177 327 1.11e-15 73.2
Msa0588040 MtrunA17_Chr8g0365241 31.655 139 92 3 23 160 214 350 1.14e-15 73.2
Msa0588040 MtrunA17_Chr7g0239821 30.719 153 99 4 23 170 220 370 1.17e-15 73.2
Msa0588040 MtrunA17_Chr5g0424211 32.759 116 76 2 23 138 202 315 1.28e-15 72.8
Msa0588040 MtrunA17_Chr4g0055911 31.847 157 99 5 1 150 145 300 1.29e-15 72.8
Msa0588040 MtrunA17_Chr2g0314401 35.766 137 84 4 26 160 211 345 1.32e-15 73.2
Msa0588040 MtrunA17_Chr7g0239121 30.216 139 95 2 23 160 207 344 1.34e-15 73.2
Msa0588040 MtrunA17_Chr2g0314381 35.766 137 84 4 26 160 237 371 1.64e-15 72.8
Msa0588040 MtrunA17_Chr4g0055871 33.566 143 85 4 17 156 163 298 1.91e-15 72.4
Msa0588040 MtrunA17_Chr5g0420951 32.374 139 91 3 23 160 210 346 2.12e-15 72.4
Msa0588040 MtrunA17_Chr3g0093751 33.333 129 82 4 39 165 224 350 2.26e-15 72.4
Msa0588040 MtrunA17_Chr7g0266651 35.507 138 79 7 31 163 223 355 2.32e-15 72.4
Msa0588040 MtrunA17_Chr6g0455481 36.220 127 77 4 31 156 206 329 2.38e-15 72.0
Msa0588040 MtrunA17_Chr5g0420941 34.615 130 82 3 23 151 201 328 2.45e-15 72.4
Msa0588040 MtrunA17_Chr7g0235951 31.618 136 85 4 38 167 238 371 3.97e-15 71.6
Msa0588040 MtrunA17_Chr5g0420981 30.935 139 93 3 23 160 210 346 4.20e-15 71.6
Msa0588040 MtrunA17_Chr3g0145181 32.031 128 83 4 22 147 210 335 4.77e-15 71.2
Msa0588040 MtrunA17_Chr3g0102041 31.818 154 99 5 1 151 175 325 5.28e-15 71.2
Msa0588040 MtrunA17_Chr8g0371931 31.818 154 99 5 1 151 175 325 5.87e-15 71.2
Msa0588040 MtrunA17_Chr5g0407591 43.836 73 39 2 78 149 15 86 8.03e-15 67.0
Msa0588040 MtrunA17_Chr8g0358941 33.898 118 77 1 38 155 203 319 8.87e-15 70.5
Msa0588040 MtrunA17_Chr3g0114861 30.709 127 86 2 23 149 197 321 8.93e-15 70.5
Msa0588040 MtrunA17_Chr3g0145201 32.031 128 83 4 22 147 845 970 1.65e-14 70.5
Msa0588040 MtrunA17_Chr7g0239071 31.884 138 91 3 24 160 157 292 1.97e-14 69.3
Msa0588040 MtrunA17_Chr2g0296371 30.556 144 96 3 23 164 210 351 2.04e-14 69.7
Msa0588040 MtrunA17_Chr4g0045411 31.343 134 88 3 17 149 195 325 2.55e-14 69.3
Msa0588040 MtrunA17_Chr2g0311691 28.000 175 115 5 1 167 196 367 3.09e-14 69.3
Msa0588040 MtrunA17_Chr5g0439011 31.395 172 99 9 1 157 132 299 3.15e-14 68.9
Msa0588040 MtrunA17_Chr1g0148771 34.109 129 80 4 1 126 190 316 3.21e-14 68.9
Msa0588040 MtrunA17_Chr5g0426891 30.263 152 101 5 9 157 181 330 3.51e-14 68.9
Msa0588040 MtrunA17_Chr5g0398291 34.959 123 75 4 38 157 227 347 4.89e-14 68.6
Msa0588040 MtrunA17_Chr4g0064771 33.333 120 77 3 24 142 71 188 5.12e-14 67.0
Msa0588040 MtrunA17_Chr5g0437181 32.374 139 90 4 29 166 218 353 7.65e-14 68.2
Msa0588040 MtrunA17_Chr3g0113641 29.655 145 99 3 23 166 212 354 7.82e-14 68.2
Msa0588040 MtrunA17_Chr8g0375671 31.159 138 92 3 24 160 213 348 9.60e-14 67.8
Msa0588040 MtrunA17_Chr7g0225881 28.916 166 103 6 1 156 197 357 1.08e-13 67.8
Msa0588040 MtrunA17_Chr3g0092531 31.356 118 78 3 1 117 139 254 1.48e-13 67.0
Msa0588040 MtrunA17_Chr5g0405411 33.898 118 75 3 35 151 210 325 1.71e-13 67.0
Msa0588040 MtrunA17_Chr2g0311701 27.273 176 115 6 1 167 202 373 2.43e-13 66.6
Msa0588040 MtrunA17_Chr8g0375601 32.258 124 81 3 38 160 222 343 3.92e-13 66.2
Msa0588040 MtrunA17_Chr4g0052251 30.973 113 76 2 38 149 202 313 4.18e-13 65.9
Msa0588040 MtrunA17_Chr2g0289341 29.167 168 106 7 1 157 131 296 5.24e-13 65.5
Msa0588040 MtrunA17_Chr4g0075471 30.303 132 89 3 5 135 9 138 5.82e-13 63.2
Msa0588040 MtrunA17_Chr3g0126741 35.398 113 70 3 38 150 233 342 5.92e-13 65.5
Msa0588040 MtrunA17_Chr8g0375681 32.117 137 88 5 23 157 140 273 6.12e-13 65.1
Msa0588040 MtrunA17_Chr2g0285931 30.508 118 79 3 38 154 203 318 1.07e-12 64.7
Msa0588040 MtrunA17_Chr6g0488511 35.000 140 82 5 1 132 129 267 1.14e-12 64.3
Msa0588040 MtrunA17_Chr2g0314391 29.193 161 103 5 3 160 212 364 1.65e-12 64.3
Msa0588040 MtrunA17_Chr7g0220001 30.323 155 103 5 1 153 173 324 1.85e-12 63.9
Msa0588040 MtrunA17_Chr5g0421091 30.935 139 93 3 23 160 202 338 2.27e-12 63.9
Msa0588040 MtrunA17_Chr8g0375571 29.605 152 104 3 10 160 192 341 3.43e-12 63.2
Msa0588040 MtrunA17_Chr6g0472861 28.485 165 103 6 1 156 202 360 3.70e-12 63.2
Msa0588040 MtrunA17_Chr7g0239091 29.771 131 89 3 23 152 306 434 3.99e-12 63.2
Msa0588040 MtrunA17_Chr8g0364471 25.146 171 119 5 4 167 203 371 4.60e-12 63.2
Msa0588040 MtrunA17_Chr6g0486831 31.852 135 82 5 23 150 190 321 5.55e-12 62.8
Msa0588040 MtrunA17_Chr7g0265351 28.125 160 110 3 6 164 177 332 6.00e-12 62.4
Msa0588040 MtrunA17_Chr5g0409631 44.444 63 33 2 88 149 1 62 7.32e-12 58.5
Msa0588040 MtrunA17_Chr2g0311711 29.825 171 112 7 1 166 200 367 8.98e-12 62.0
Msa0588040 MtrunA17_Chr8g0336801 30.075 133 87 5 38 167 24 153 1.54e-11 59.3
Msa0588040 MtrunA17_Chr2g0311861 25.595 168 115 7 1 161 177 341 1.61e-11 61.2
Msa0588040 MtrunA17_Chr2g0313111 32.143 112 74 2 38 149 196 305 1.77e-11 61.2
Msa0588040 MtrunA17_Chr8g0336761 26.901 171 119 6 1 167 194 362 1.98e-11 61.2
Msa0588040 MtrunA17_Chr8g0336751 26.829 164 106 5 1 156 227 384 4.81e-11 60.1
Msa0588040 MtrunA17_Chr2g0311631 26.220 164 106 4 3 158 196 352 7.11e-11 59.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0588040 AT1G52820.1 62.573 171 62 2 1 170 148 317 4.60e-77 233
Msa0588040 AT4G03070.1 55.621 169 68 2 1 163 147 314 2.94e-62 195
Msa0588040 AT1G28030.1 49.718 177 80 5 1 170 148 322 3.88e-55 177
Msa0588040 AT1G52790.1 43.529 170 93 2 1 169 142 309 3.15e-47 156
Msa0588040 AT1G52800.1 44.444 171 91 3 1 170 147 314 1.75e-45 152
Msa0588040 AT4G03050.2 47.826 138 69 3 35 170 271 407 5.27e-42 145
Msa0588040 AT4G03050.1 47.826 138 69 3 35 170 271 407 5.27e-42 145
Msa0588040 AT1G80320.1 39.773 176 97 4 1 170 146 318 6.01e-38 132
Msa0588040 AT1G52820.2 63.333 90 32 1 1 90 148 236 2.17e-34 122
Msa0588040 AT1G52810.1 39.429 175 68 6 1 170 148 289 9.98e-30 110
Msa0588040 AT1G15540.3 40.000 175 96 6 1 170 156 326 1.67e-29 110
Msa0588040 AT1G15540.2 40.000 175 96 6 1 170 152 322 1.70e-29 110
Msa0588040 AT1G15540.1 40.000 175 96 6 1 170 149 319 1.70e-29 110
Msa0588040 AT1G15540.4 40.000 175 96 6 1 170 149 319 1.70e-29 110
Msa0588040 AT4G23340.2 35.758 165 96 4 1 157 19 181 1.16e-24 95.5
Msa0588040 AT4G23340.1 35.758 165 96 4 1 157 137 299 2.66e-23 94.0
Msa0588040 AT5G51810.1 33.557 149 96 3 5 152 206 352 1.00e-20 87.8
Msa0588040 AT2G36690.2 34.591 159 98 5 2 157 196 351 1.09e-20 87.4
Msa0588040 AT2G36690.1 34.591 159 98 5 2 157 196 351 1.09e-20 87.4
Msa0588040 AT4G10490.1 32.258 155 100 4 2 153 177 329 2.89e-20 86.3
Msa0588040 AT5G24530.1 34.783 161 98 5 1 156 169 327 1.75e-19 84.0
Msa0588040 AT4G25420.1 32.886 149 97 3 5 152 208 354 4.39e-19 83.2
Msa0588040 AT5G07200.1 36.641 131 80 3 5 134 207 335 4.70e-19 83.2
Msa0588040 AT4G21200.1 36.441 118 73 2 11 128 183 298 5.40e-19 82.8
Msa0588040 AT5G51310.1 30.857 175 100 5 2 157 132 304 1.37e-18 81.3
Msa0588040 AT1G78550.2 31.333 150 100 3 12 160 122 269 1.43e-17 78.2
Msa0588040 AT1G44090.1 34.351 131 83 3 23 152 229 357 2.93e-17 78.2
Msa0588040 AT1G78550.1 31.333 150 100 3 12 160 200 347 2.97e-17 78.2
Msa0588040 AT5G20550.1 33.588 131 82 4 35 161 217 346 6.76e-17 77.0
Msa0588040 AT1G50960.1 40.000 125 68 3 1 120 169 291 1.00e-16 76.3
Msa0588040 AT3G13610.1 34.848 132 82 4 35 164 227 356 1.17e-16 76.3
Msa0588040 AT1G60980.1 32.215 149 95 4 5 152 208 351 2.00e-16 75.9
Msa0588040 AT5G54000.1 33.784 148 91 5 11 154 114 258 3.13e-16 74.3
Msa0588040 AT1G15550.1 29.936 157 103 2 1 151 184 339 4.34e-16 74.7
Msa0588040 AT5G54000.2 33.784 148 91 5 11 154 194 338 5.19e-16 74.3
Msa0588040 AT5G05600.1 32.877 146 95 3 23 167 224 367 6.08e-16 74.3
Msa0588040 AT1G02400.1 32.759 116 76 2 37 151 197 311 6.23e-16 73.9
Msa0588040 AT3G60290.1 31.737 167 109 5 2 166 188 351 7.66e-16 73.9
Msa0588040 AT3G51240.2 32.121 165 106 5 1 162 90 251 8.13e-16 73.2
Msa0588040 AT3G19010.1 30.323 155 97 4 1 149 174 323 9.50e-16 73.9
Msa0588040 AT3G19010.4 30.323 155 97 4 1 149 174 323 9.50e-16 73.9
Msa0588040 AT3G51240.1 32.121 165 106 5 1 162 174 335 1.11e-15 73.6
Msa0588040 AT2G44800.1 31.138 167 110 5 2 166 188 351 1.27e-15 73.6
Msa0588040 AT4G10500.1 28.571 168 116 4 2 167 179 344 3.20e-15 72.4
Msa0588040 AT4G16330.1 29.697 165 109 5 1 164 95 253 3.50e-15 71.2
Msa0588040 AT1G55290.1 31.250 128 86 2 38 164 230 356 4.51e-15 72.0
Msa0588040 AT4G21690.1 31.387 137 88 3 17 150 200 333 5.46e-15 71.6
Msa0588040 AT1G30040.1 28.481 158 101 4 1 149 158 312 5.62e-15 71.6
Msa0588040 AT4G16330.2 29.697 165 109 5 1 164 201 359 1.17e-14 70.9
Msa0588040 AT3G19010.3 30.469 128 87 2 23 149 167 293 1.23e-14 70.5
Msa0588040 AT2G34555.1 28.676 136 94 2 16 149 173 307 1.30e-14 70.5
Msa0588040 AT1G80340.1 29.221 154 102 2 3 150 179 331 1.31e-14 70.5
Msa0588040 AT2G38240.1 33.577 137 87 4 29 164 213 346 1.49e-14 70.5
Msa0588040 AT5G08640.2 32.877 146 88 4 4 149 190 325 2.00e-14 70.1
Msa0588040 AT5G08640.1 32.877 146 88 4 4 149 190 325 2.00e-14 70.1
Msa0588040 AT1G47990.1 32.479 117 77 2 36 151 186 301 2.24e-14 69.7
Msa0588040 AT1G14130.1 34.127 126 82 1 22 146 155 280 2.34e-14 69.7
Msa0588040 AT4G16765.6 32.624 141 89 4 16 151 98 237 2.39e-14 68.9
Msa0588040 AT4G16765.1 32.624 141 89 4 16 151 98 237 2.39e-14 68.9
Msa0588040 AT4G16765.2 32.624 141 89 4 16 151 98 237 2.39e-14 68.9
Msa0588040 AT5G63600.2 29.630 135 92 3 17 150 179 311 4.21e-14 68.9
Msa0588040 AT1G78440.1 32.143 112 75 1 38 149 192 302 4.87e-14 68.9
Msa0588040 AT5G59540.1 29.936 157 104 5 1 153 196 350 5.98e-14 68.9
Msa0588040 AT5G43440.1 28.105 153 104 4 1 149 195 345 7.24e-14 68.6
Msa0588040 AT5G63600.1 29.104 134 93 2 17 150 179 310 1.08e-13 67.8
Msa0588040 AT5G20400.1 29.932 147 98 4 11 154 193 337 1.09e-13 67.8
Msa0588040 AT1G14120.2 33.333 144 90 2 22 159 154 297 1.31e-13 67.4
Msa0588040 AT1G14120.1 33.333 144 90 2 22 159 154 297 1.31e-13 67.4
Msa0588040 AT1G14120.3 33.333 144 90 2 22 159 154 297 1.31e-13 67.4
Msa0588040 AT3G11180.1 30.822 146 98 3 23 167 253 396 1.53e-13 67.8
Msa0588040 AT4G22880.1 32.000 125 81 4 29 152 219 340 2.65e-13 67.0
Msa0588040 AT4G22880.2 32.000 125 81 4 29 152 219 340 2.65e-13 67.0
Msa0588040 AT4G22880.3 32.000 125 81 4 29 152 219 340 2.65e-13 67.0
Msa0588040 AT1G06620.1 27.607 163 106 5 1 156 195 352 2.67e-13 67.0
Msa0588040 AT3G11180.2 30.201 149 101 3 23 170 253 399 2.77e-13 67.0
Msa0588040 AT1G06650.2 29.814 161 106 6 1 156 198 356 2.92e-13 67.0
Msa0588040 AT1G49390.2 35.455 110 66 4 35 142 138 244 3.09e-13 66.2
Msa0588040 AT4G16765.5 34.483 116 72 2 39 151 77 191 3.40e-13 65.1
Msa0588040 AT3G55970.1 30.986 142 93 3 23 163 215 352 3.88e-13 66.6
Msa0588040 AT1G49390.1 35.455 110 66 4 35 142 217 323 5.10e-13 66.2
Msa0588040 AT5G43935.1 28.358 134 91 3 17 150 155 283 6.40e-13 65.5
Msa0588040 AT2G19590.2 32.143 140 85 4 1 133 121 257 7.52e-13 65.1
Msa0588040 AT2G19590.1 32.143 140 85 4 1 133 136 272 8.65e-13 65.1
Msa0588040 AT3G19000.1 30.147 136 93 2 16 150 195 329 1.66e-12 64.7
Msa0588040 AT4G16765.3 33.594 128 79 4 16 138 98 224 1.98e-12 63.5
Msa0588040 AT3G46500.4 30.075 133 86 4 23 150 43 173 2.05e-12 62.8
Msa0588040 AT5G43450.1 28.302 159 108 5 1 155 192 348 4.92e-12 63.2
Msa0588040 AT1G06645.1 28.571 161 108 7 1 156 208 366 5.72e-12 63.2
Msa0588040 AT3G46500.10 30.075 133 86 4 23 150 105 235 5.90e-12 62.4
Msa0588040 AT3G46500.1 30.075 133 86 4 23 150 105 235 5.90e-12 62.4
Msa0588040 AT3G46500.5 30.075 133 86 4 23 150 179 309 1.01e-11 62.4
Msa0588040 AT1G04380.1 28.387 155 105 5 1 151 175 327 1.04e-11 62.4
Msa0588040 AT4G25300.2 30.657 137 92 3 22 157 116 250 1.05e-11 61.6
Msa0588040 AT3G12900.1 24.699 166 121 3 1 164 188 351 1.23e-11 62.0
Msa0588040 AT3G46500.6 34.545 110 65 4 23 127 74 181 1.25e-11 60.8
Msa0588040 AT3G46500.8 34.545 110 65 4 23 127 74 181 1.25e-11 60.8
Msa0588040 AT3G46500.3 34.545 110 65 4 23 127 105 212 2.92e-11 60.1
Msa0588040 AT3G46500.7 34.545 110 65 4 23 127 179 286 4.36e-11 60.5
Msa0588040 AT4G25300.1 30.657 137 92 3 22 157 210 344 4.52e-11 60.5

Find 60 sgRNAs with CRISPR-Local

Find 177 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTAAACCTTCCACTTGATTT+TGG 0.165013 4_2:+10149399 None:intergenic
ACACATCATATATATATTTA+TGG 0.191669 4_2:+10148663 None:intergenic
TTTATAATGTACCCTTCTTT+GGG 0.224285 4_2:+10148990 None:intergenic
CATAACCCTGAGATGGTAAT+TGG 0.227792 4_2:+10149502 None:intergenic
GCTTATCCATTGTCCATCTT+TGG 0.274641 4_2:+10149367 None:intergenic
TATATGTTGTTTGCATTCAT+TGG 0.322888 4_2:-10148592 Msa0588040:three_prime_UTR
AGCTACAAGTCTTCTTCTTC+AGG 0.328794 4_2:-10149347 Msa0588040:CDS
CTCATCATCACCCGGTGAAA+TGG 0.378285 4_2:+10149053 None:intergenic
AATTACACCGGTGTTACGTC+TGG 0.386685 4_2:-10148813 Msa0588040:three_prime_UTR
GGCTGCATTCGCCATTTCAC+CGG 0.398369 4_2:-10149064 Msa0588040:CDS
CTATAGCTTATGTTATTAAG+AGG 0.409102 4_2:-10148691 Msa0588040:three_prime_UTR
TCCTCATCCACCAGCTCCTC+CGG 0.417316 4_2:+10148963 None:intergenic
ACTCAACCAATTACCATCTC+AGG 0.428477 4_2:-10149508 Msa0588040:CDS
TCCGGAGGAGCTGGTGGATG+AGG 0.453378 4_2:-10148964 Msa0588040:CDS
TATAAAAGCTCCGGAGGAGC+TGG 0.478262 4_2:-10148973 Msa0588040:CDS
AGGAACTCAGCATAATCAAA+AGG 0.497152 4_2:+10148921 None:intergenic
ATAGCTCAAACCCATCCCTT+TGG 0.499909 4_2:+10148710 None:intergenic
CGGTCTGTGCGCACTTATTG+TGG 0.509968 4_2:-10148864 Msa0588040:CDS
CTACTCTCATGAAGGCCAAA+GGG 0.512486 4_2:-10148725 Msa0588040:three_prime_UTR
AGGGTACATTATAAAAGCTC+CGG 0.518778 4_2:-10148982 Msa0588040:CDS
TTTCACGCTCGAGAAGGCGT+GGG 0.522167 4_2:-10148891 Msa0588040:CDS
TTTAGGTGTTGAAAAGTACA+TGG 0.523921 4_2:-10149543 Msa0588040:CDS
GCTGCATTCGCCATTTCACC+GGG 0.528558 4_2:-10149063 Msa0588040:CDS
TTCACGCTCGAGAAGGCGTG+GGG 0.534148 4_2:-10148890 Msa0588040:CDS
AATGAGGCAAGGTATTCAGC+AGG 0.534999 4_2:-10149026 Msa0588040:CDS
CTCATGAAGGCCAAAGGGAT+GGG 0.539788 4_2:-10148720 Msa0588040:three_prime_UTR
TCTCATGAAGGCCAAAGGGA+TGG 0.541383 4_2:-10148721 Msa0588040:three_prime_UTR
TTATAATGTACCCTTCTTTG+GGG 0.548996 4_2:+10148991 None:intergenic
CAAACAAGTGACACAAAACT+AGG 0.550916 4_2:-10149464 Msa0588040:CDS
AAAAGCTCCGGAGGAGCTGG+TGG 0.554268 4_2:-10148970 Msa0588040:CDS
TTGTACCAAAATCAAGTGGA+AGG 0.554694 4_2:-10149404 Msa0588040:CDS
TTAGAGATGATGACCAAAGA+TGG 0.562948 4_2:-10149380 Msa0588040:CDS
TGTACTTCATAACCCTGAGA+TGG 0.565517 4_2:+10149495 None:intergenic
TATAGCTTATGTTATTAAGA+GGG 0.570560 4_2:-10148690 Msa0588040:three_prime_UTR
CATATTGTACCAAAATCAAG+TGG 0.585592 4_2:-10149408 Msa0588040:CDS
AAGTATTACTACTCTCATGA+AGG 0.588140 4_2:-10148733 Msa0588040:three_prime_UTR
TTTCACCGGGTGATGATGAG+TGG 0.590400 4_2:-10149050 Msa0588040:CDS
CATTCCCACTCATCATCACC+CGG 0.593548 4_2:+10149045 None:intergenic
ACAAAGTTCTTGTCAGTGTG+TGG 0.594909 4_2:+10149434 None:intergenic
TGTAATTTGAGCAGTAAATG+TGG 0.597446 4_2:+10148829 None:intergenic
TATAATGTACCCTTCTTTGG+GGG 0.599958 4_2:+10148992 None:intergenic
CTCGAGCGTGAAAATACTTG+AGG 0.604032 4_2:+10148901 None:intergenic
CTCAACCAATTACCATCTCA+GGG 0.604591 4_2:-10149507 Msa0588040:CDS
TGCAGGCATGGTCAAACGGG+AGG 0.605635 4_2:-10149085 Msa0588040:intron
ACTACTCTCATGAAGGCCAA+AGG 0.608150 4_2:-10148726 Msa0588040:three_prime_UTR
TTCACCGGGTGATGATGAGT+GGG 0.609819 4_2:-10149049 Msa0588040:CDS
TGATGACCAAAGATGGACAA+TGG 0.610775 4_2:-10149373 Msa0588040:CDS
CAACAGAATACTTCTTACAA+AGG 0.614891 4_2:+10148563 None:intergenic
GGTGATGATGAGTGGGAATG+AGG 0.615235 4_2:-10149042 Msa0588040:CDS
ATTACACCGGTGTTACGTCT+GGG 0.619845 4_2:-10148812 Msa0588040:three_prime_UTR
TCTTGTCAGTGTGTGGACTG+AGG 0.624048 4_2:+10149441 None:intergenic
CATGAGAGTAGTAATACTTG+AGG 0.629628 4_2:+10148737 None:intergenic
CTCAGGGTTATGAAGTACAA+AGG 0.637097 4_2:-10149491 Msa0588040:CDS
ATTTACTGCTCAAATTACAC+CGG 0.658724 4_2:-10148825 Msa0588040:three_prime_UTR
TGATGAGTGGGAATGAGGCA+AGG 0.659052 4_2:-10149037 Msa0588040:CDS
ACACTACCCAGACGTAACAC+CGG 0.666494 4_2:+10148806 None:intergenic
GTACATTATAAAAGCTCCGG+AGG 0.668840 4_2:-10148979 Msa0588040:CDS
ATGAGGCAAGGTATTCAGCA+GGG 0.682721 4_2:-10149025 Msa0588040:CDS
TCACGCTCGAGAAGGCGTGG+GGG 0.693622 4_2:-10148889 Msa0588040:CDS
AGGTGTTGAAAAGTACATGG+AGG 0.723372 4_2:-10149540 Msa0588040:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AATTATTAAAAAGATGATTT+TGG - chr4_2:10148483-10148502 Msa0588040:three_prime_UTR 10.0%
!!! AATTATTAAAAAGATGATTT+TGG - chr4_2:10148483-10148502 Msa0588040:three_prime_UTR 10.0%
!! ATTTATAAATAACCATCAAT+TGG - chr4_2:10148786-10148805 Msa0588040:three_prime_UTR 15.0%
!! AATAATAAATTTCAACAACA+TGG + chr4_2:10148899-10148918 None:intergenic 15.0%
!!! GTTGTTGAAATTTATTATTT+TGG - chr4_2:10148900-10148919 Msa0588040:CDS 15.0%
!! ACACATCATATATATATTTA+TGG + chr4_2:10149393-10149412 None:intergenic 15.0%
!! ATTTATAAATAACCATCAAT+TGG - chr4_2:10148786-10148805 Msa0588040:three_prime_UTR 15.0%
!! AATAATAAATTTCAACAACA+TGG + chr4_2:10148899-10148918 None:intergenic 15.0%
!!! GTTGTTGAAATTTATTATTT+TGG - chr4_2:10148900-10148919 Msa0588040:CDS 15.0%
!! ACACATCATATATATATTTA+TGG + chr4_2:10149393-10149412 None:intergenic 15.0%
!!! TTGATGGTTATTTATAAATG+AGG + chr4_2:10148785-10148804 None:intergenic 20.0%
!! TATAGCTTATGTTATTAAGA+GGG - chr4_2:10149363-10149382 Msa0588040:CDS 20.0%
!!! ACAAATTTTTATCAAGTTCA+AGG + chr4_2:10149441-10149460 None:intergenic 20.0%
!!! TTGATGGTTATTTATAAATG+AGG + chr4_2:10148785-10148804 None:intergenic 20.0%
!! TATAGCTTATGTTATTAAGA+GGG - chr4_2:10149363-10149382 Msa0588040:CDS 20.0%
!!! ACAAATTTTTATCAAGTTCA+AGG + chr4_2:10149441-10149460 None:intergenic 20.0%
!!! AAGATGATTTTGGAAAGTTT+AGG - chr4_2:10148493-10148512 Msa0588040:three_prime_UTR 25.0%
! TATAAATGAGGAATAGTGAA+TGG + chr4_2:10148773-10148792 None:intergenic 25.0%
!! ATTTCTCATGTAAATTTTGC+AGG - chr4_2:10148951-10148970 Msa0588040:CDS 25.0%
! TTTATAATGTACCCTTCTTT+GGG + chr4_2:10149066-10149085 None:intergenic 25.0%
!! TTTTATAATGTACCCTTCTT+TGG + chr4_2:10149067-10149086 None:intergenic 25.0%
! CTATAGCTTATGTTATTAAG+AGG - chr4_2:10149362-10149381 Msa0588040:CDS 25.0%
!! TATATGTTGTTTGCATTCAT+TGG - chr4_2:10149461-10149480 Msa0588040:CDS 25.0%
!!! AAGATGATTTTGGAAAGTTT+AGG - chr4_2:10148493-10148512 Msa0588040:three_prime_UTR 25.0%
! TATAAATGAGGAATAGTGAA+TGG + chr4_2:10148773-10148792 None:intergenic 25.0%
!! ATTTCTCATGTAAATTTTGC+AGG - chr4_2:10148951-10148970 Msa0588040:CDS 25.0%
! TTTATAATGTACCCTTCTTT+GGG + chr4_2:10149066-10149085 None:intergenic 25.0%
!! TTTTATAATGTACCCTTCTT+TGG + chr4_2:10149067-10149086 None:intergenic 25.0%
! CTATAGCTTATGTTATTAAG+AGG - chr4_2:10149362-10149381 Msa0588040:CDS 25.0%
!! TATATGTTGTTTGCATTCAT+TGG - chr4_2:10149461-10149480 Msa0588040:CDS 25.0%
!! TTTAGGTGTTGAAAAGTACA+TGG - chr4_2:10148510-10148529 Msa0588040:three_prime_UTR 30.0%
!! CACTTGATTTTGGTACAATA+TGG + chr4_2:10148647-10148666 None:intergenic 30.0%
CATATTGTACCAAAATCAAG+TGG - chr4_2:10148645-10148664 Msa0588040:three_prime_UTR 30.0%
CTTCATTAGTTACCAATTGA+TGG + chr4_2:10148801-10148820 None:intergenic 30.0%
TTATAATGTACCCTTCTTTG+GGG + chr4_2:10149065-10149084 None:intergenic 30.0%
CAAAAGGCTTAAAAAGCAAA+GGG + chr4_2:10149119-10149138 None:intergenic 30.0%
TCAAAAGGCTTAAAAAGCAA+AGG + chr4_2:10149120-10149139 None:intergenic 30.0%
TGTAATTTGAGCAGTAAATG+TGG + chr4_2:10149227-10149246 None:intergenic 30.0%
ATTTACTGCTCAAATTACAC+CGG - chr4_2:10149228-10149247 Msa0588040:intron 30.0%
AAGTATTACTACTCTCATGA+AGG - chr4_2:10149320-10149339 Msa0588040:CDS 30.0%
CAACAGAATACTTCTTACAA+AGG + chr4_2:10149493-10149512 None:intergenic 30.0%
!! TTTAGGTGTTGAAAAGTACA+TGG - chr4_2:10148510-10148529 Msa0588040:three_prime_UTR 30.0%
!! CACTTGATTTTGGTACAATA+TGG + chr4_2:10148647-10148666 None:intergenic 30.0%
CATATTGTACCAAAATCAAG+TGG - chr4_2:10148645-10148664 Msa0588040:three_prime_UTR 30.0%
CTTCATTAGTTACCAATTGA+TGG + chr4_2:10148801-10148820 None:intergenic 30.0%
TTATAATGTACCCTTCTTTG+GGG + chr4_2:10149065-10149084 None:intergenic 30.0%
CAAAAGGCTTAAAAAGCAAA+GGG + chr4_2:10149119-10149138 None:intergenic 30.0%
TCAAAAGGCTTAAAAAGCAA+AGG + chr4_2:10149120-10149139 None:intergenic 30.0%
TGTAATTTGAGCAGTAAATG+TGG + chr4_2:10149227-10149246 None:intergenic 30.0%
ATTTACTGCTCAAATTACAC+CGG - chr4_2:10149228-10149247 Msa0588040:intron 30.0%
AAGTATTACTACTCTCATGA+AGG - chr4_2:10149320-10149339 Msa0588040:CDS 30.0%
CAACAGAATACTTCTTACAA+AGG + chr4_2:10149493-10149512 None:intergenic 30.0%
!!! GTTTTGTGTCACTTGTTTGA+GGG + chr4_2:10148588-10148607 None:intergenic 35.0%
!!! AGTTTTGTGTCACTTGTTTG+AGG + chr4_2:10148589-10148608 None:intergenic 35.0%
CAAACAAGTGACACAAAACT+AGG - chr4_2:10148589-10148608 Msa0588040:three_prime_UTR 35.0%
TTGTACCAAAATCAAGTGGA+AGG - chr4_2:10148649-10148668 Msa0588040:three_prime_UTR 35.0%
! CTAAACCTTCCACTTGATTT+TGG + chr4_2:10148657-10148676 None:intergenic 35.0%
TTAGAGATGATGACCAAAGA+TGG - chr4_2:10148673-10148692 Msa0588040:three_prime_UTR 35.0%
! TCATGTAAATTTTGCAGGCA+TGG - chr4_2:10148956-10148975 Msa0588040:CDS 35.0%
TATAATGTACCCTTCTTTGG+GGG + chr4_2:10149064-10149083 None:intergenic 35.0%
AGGGTACATTATAAAAGCTC+CGG - chr4_2:10149071-10149090 Msa0588040:CDS 35.0%
AGGAACTCAGCATAATCAAA+AGG + chr4_2:10149135-10149154 None:intergenic 35.0%
CATGAGAGTAGTAATACTTG+AGG + chr4_2:10149319-10149338 None:intergenic 35.0%
!!! GTTTTGTGTCACTTGTTTGA+GGG + chr4_2:10148588-10148607 None:intergenic 35.0%
!!! AGTTTTGTGTCACTTGTTTG+AGG + chr4_2:10148589-10148608 None:intergenic 35.0%
CAAACAAGTGACACAAAACT+AGG - chr4_2:10148589-10148608 Msa0588040:three_prime_UTR 35.0%
TTGTACCAAAATCAAGTGGA+AGG - chr4_2:10148649-10148668 Msa0588040:three_prime_UTR 35.0%
! CTAAACCTTCCACTTGATTT+TGG + chr4_2:10148657-10148676 None:intergenic 35.0%
TTAGAGATGATGACCAAAGA+TGG - chr4_2:10148673-10148692 Msa0588040:three_prime_UTR 35.0%
! TCATGTAAATTTTGCAGGCA+TGG - chr4_2:10148956-10148975 Msa0588040:CDS 35.0%
TATAATGTACCCTTCTTTGG+GGG + chr4_2:10149064-10149083 None:intergenic 35.0%
AGGGTACATTATAAAAGCTC+CGG - chr4_2:10149071-10149090 Msa0588040:CDS 35.0%
AGGAACTCAGCATAATCAAA+AGG + chr4_2:10149135-10149154 None:intergenic 35.0%
CATGAGAGTAGTAATACTTG+AGG + chr4_2:10149319-10149338 None:intergenic 35.0%
!! AGGTGTTGAAAAGTACATGG+AGG - chr4_2:10148513-10148532 Msa0588040:three_prime_UTR 40.0%
ACTCAACCAATTACCATCTC+AGG - chr4_2:10148545-10148564 Msa0588040:three_prime_UTR 40.0%
CTCAACCAATTACCATCTCA+GGG - chr4_2:10148546-10148565 Msa0588040:three_prime_UTR 40.0%
CATAACCCTGAGATGGTAAT+TGG + chr4_2:10148554-10148573 None:intergenic 40.0%
TGTACTTCATAACCCTGAGA+TGG + chr4_2:10148561-10148580 None:intergenic 40.0%
CTCAGGGTTATGAAGTACAA+AGG - chr4_2:10148562-10148581 Msa0588040:three_prime_UTR 40.0%
ACAAAGTTCTTGTCAGTGTG+TGG + chr4_2:10148622-10148641 None:intergenic 40.0%
TGATGACCAAAGATGGACAA+TGG - chr4_2:10148680-10148699 Msa0588040:three_prime_UTR 40.0%
GCTTATCCATTGTCCATCTT+TGG + chr4_2:10148689-10148708 None:intergenic 40.0%
AGCTACAAGTCTTCTTCTTC+AGG - chr4_2:10148706-10148725 Msa0588040:three_prime_UTR 40.0%
!! GGCAGTTTTGTAGTTGTGAT+TGG - chr4_2:10148727-10148746 Msa0588040:three_prime_UTR 40.0%
! ATTTTGCAGGCATGGTCAAA+CGG - chr4_2:10148964-10148983 Msa0588040:CDS 40.0%
GTACATTATAAAAGCTCCGG+AGG - chr4_2:10149074-10149093 Msa0588040:CDS 40.0%
! AAGTATTTTCACGCTCGAGA+AGG - chr4_2:10149156-10149175 Msa0588040:intron 40.0%
GCACACATATGCAAAGTTGA+AGG - chr4_2:10149582-10149601 Msa0588040:five_prime_UTR 40.0%
!! AGGTGTTGAAAAGTACATGG+AGG - chr4_2:10148513-10148532 Msa0588040:three_prime_UTR 40.0%
ACTCAACCAATTACCATCTC+AGG - chr4_2:10148545-10148564 Msa0588040:three_prime_UTR 40.0%
CTCAACCAATTACCATCTCA+GGG - chr4_2:10148546-10148565 Msa0588040:three_prime_UTR 40.0%
CATAACCCTGAGATGGTAAT+TGG + chr4_2:10148554-10148573 None:intergenic 40.0%
TGTACTTCATAACCCTGAGA+TGG + chr4_2:10148561-10148580 None:intergenic 40.0%
CTCAGGGTTATGAAGTACAA+AGG - chr4_2:10148562-10148581 Msa0588040:three_prime_UTR 40.0%
ACAAAGTTCTTGTCAGTGTG+TGG + chr4_2:10148622-10148641 None:intergenic 40.0%
TGATGACCAAAGATGGACAA+TGG - chr4_2:10148680-10148699 Msa0588040:three_prime_UTR 40.0%
GCTTATCCATTGTCCATCTT+TGG + chr4_2:10148689-10148708 None:intergenic 40.0%
AGCTACAAGTCTTCTTCTTC+AGG - chr4_2:10148706-10148725 Msa0588040:three_prime_UTR 40.0%
!! GGCAGTTTTGTAGTTGTGAT+TGG - chr4_2:10148727-10148746 Msa0588040:three_prime_UTR 40.0%
! ATTTTGCAGGCATGGTCAAA+CGG - chr4_2:10148964-10148983 Msa0588040:CDS 40.0%
GTACATTATAAAAGCTCCGG+AGG - chr4_2:10149074-10149093 Msa0588040:CDS 40.0%
! AAGTATTTTCACGCTCGAGA+AGG - chr4_2:10149156-10149175 Msa0588040:intron 40.0%
AATGCATGTGACCACGATCT+GGG + chr4_2:10148869-10148888 None:intergenic 45.0%
AAATGCATGTGACCACGATC+TGG + chr4_2:10148870-10148889 None:intergenic 45.0%
! TTTTGCAGGCATGGTCAAAC+GGG - chr4_2:10148965-10148984 Msa0588040:CDS 45.0%
! AATGAGGCAAGGTATTCAGC+AGG - chr4_2:10149027-10149046 Msa0588040:CDS 45.0%
! ATGAGGCAAGGTATTCAGCA+GGG - chr4_2:10149028-10149047 Msa0588040:CDS 45.0%
TTGTTCTCTACCCCCAAAGA+AGG - chr4_2:10149051-10149070 Msa0588040:CDS 45.0%
TGTTCTCTACCCCCAAAGAA+GGG - chr4_2:10149052-10149071 Msa0588040:CDS 45.0%
CTCGAGCGTGAAAATACTTG+AGG + chr4_2:10149155-10149174 None:intergenic 45.0%
!! AATTACACCGGTGTTACGTC+TGG - chr4_2:10149240-10149259 Msa0588040:intron 45.0%
!! ATTACACCGGTGTTACGTCT+GGG - chr4_2:10149241-10149260 Msa0588040:intron 45.0%
ACTACTCTCATGAAGGCCAA+AGG - chr4_2:10149327-10149346 Msa0588040:CDS 45.0%
CTACTCTCATGAAGGCCAAA+GGG - chr4_2:10149328-10149347 Msa0588040:CDS 45.0%
ATAGCTCAAACCCATCCCTT+TGG + chr4_2:10149346-10149365 None:intergenic 45.0%
AATGCATGTGACCACGATCT+GGG + chr4_2:10148869-10148888 None:intergenic 45.0%
AAATGCATGTGACCACGATC+TGG + chr4_2:10148870-10148889 None:intergenic 45.0%
! TTTTGCAGGCATGGTCAAAC+GGG - chr4_2:10148965-10148984 Msa0588040:CDS 45.0%
! AATGAGGCAAGGTATTCAGC+AGG - chr4_2:10149027-10149046 Msa0588040:CDS 45.0%
! ATGAGGCAAGGTATTCAGCA+GGG - chr4_2:10149028-10149047 Msa0588040:CDS 45.0%
TTGTTCTCTACCCCCAAAGA+AGG - chr4_2:10149051-10149070 Msa0588040:CDS 45.0%
TGTTCTCTACCCCCAAAGAA+GGG - chr4_2:10149052-10149071 Msa0588040:CDS 45.0%
CTCGAGCGTGAAAATACTTG+AGG + chr4_2:10149155-10149174 None:intergenic 45.0%
!! AATTACACCGGTGTTACGTC+TGG - chr4_2:10149240-10149259 Msa0588040:intron 45.0%
!! ATTACACCGGTGTTACGTCT+GGG - chr4_2:10149241-10149260 Msa0588040:intron 45.0%
ACTACTCTCATGAAGGCCAA+AGG - chr4_2:10149327-10149346 Msa0588040:CDS 45.0%
CTACTCTCATGAAGGCCAAA+GGG - chr4_2:10149328-10149347 Msa0588040:CDS 45.0%
ATAGCTCAAACCCATCCCTT+TGG + chr4_2:10149346-10149365 None:intergenic 45.0%
! TCTTGTCAGTGTGTGGACTG+AGG + chr4_2:10148615-10148634 None:intergenic 50.0%
CTCATCATCACCCGGTGAAA+TGG + chr4_2:10149003-10149022 None:intergenic 50.0%
! TTTCACCGGGTGATGATGAG+TGG - chr4_2:10149003-10149022 Msa0588040:CDS 50.0%
! TTCACCGGGTGATGATGAGT+GGG - chr4_2:10149004-10149023 Msa0588040:CDS 50.0%
CATTCCCACTCATCATCACC+CGG + chr4_2:10149011-10149030 None:intergenic 50.0%
! GGTGATGATGAGTGGGAATG+AGG - chr4_2:10149011-10149030 Msa0588040:CDS 50.0%
TGATGAGTGGGAATGAGGCA+AGG - chr4_2:10149016-10149035 Msa0588040:CDS 50.0%
TATAAAAGCTCCGGAGGAGC+TGG - chr4_2:10149080-10149099 Msa0588040:CDS 50.0%
ACACTACCCAGACGTAACAC+CGG + chr4_2:10149250-10149269 None:intergenic 50.0%
TCTCATGAAGGCCAAAGGGA+TGG - chr4_2:10149332-10149351 Msa0588040:CDS 50.0%
CTCATGAAGGCCAAAGGGAT+GGG - chr4_2:10149333-10149352 Msa0588040:CDS 50.0%
! TCTTGTCAGTGTGTGGACTG+AGG + chr4_2:10148615-10148634 None:intergenic 50.0%
CTCATCATCACCCGGTGAAA+TGG + chr4_2:10149003-10149022 None:intergenic 50.0%
! TTTCACCGGGTGATGATGAG+TGG - chr4_2:10149003-10149022 Msa0588040:CDS 50.0%
! TTCACCGGGTGATGATGAGT+GGG - chr4_2:10149004-10149023 Msa0588040:CDS 50.0%
CATTCCCACTCATCATCACC+CGG + chr4_2:10149011-10149030 None:intergenic 50.0%
! GGTGATGATGAGTGGGAATG+AGG - chr4_2:10149011-10149030 Msa0588040:CDS 50.0%
TGATGAGTGGGAATGAGGCA+AGG - chr4_2:10149016-10149035 Msa0588040:CDS 50.0%
TATAAAAGCTCCGGAGGAGC+TGG - chr4_2:10149080-10149099 Msa0588040:CDS 50.0%
ACACTACCCAGACGTAACAC+CGG + chr4_2:10149250-10149269 None:intergenic 50.0%
TCTCATGAAGGCCAAAGGGA+TGG - chr4_2:10149332-10149351 Msa0588040:CDS 50.0%
CTCATGAAGGCCAAAGGGAT+GGG - chr4_2:10149333-10149352 Msa0588040:CDS 50.0%
GGCTGCATTCGCCATTTCAC+CGG - chr4_2:10148989-10149008 Msa0588040:CDS 55.0%
GCTGCATTCGCCATTTCACC+GGG - chr4_2:10148990-10149009 Msa0588040:CDS 55.0%
! TTTTCACGCTCGAGAAGGCG+TGG - chr4_2:10149161-10149180 Msa0588040:intron 55.0%
! TTTCACGCTCGAGAAGGCGT+GGG - chr4_2:10149162-10149181 Msa0588040:intron 55.0%
CGGTCTGTGCGCACTTATTG+TGG - chr4_2:10149189-10149208 Msa0588040:intron 55.0%
GGCTGCATTCGCCATTTCAC+CGG - chr4_2:10148989-10149008 Msa0588040:CDS 55.0%
GCTGCATTCGCCATTTCACC+GGG - chr4_2:10148990-10149009 Msa0588040:CDS 55.0%
! TTTTCACGCTCGAGAAGGCG+TGG - chr4_2:10149161-10149180 Msa0588040:intron 55.0%
! TTTCACGCTCGAGAAGGCGT+GGG - chr4_2:10149162-10149181 Msa0588040:intron 55.0%
CGGTCTGTGCGCACTTATTG+TGG - chr4_2:10149189-10149208 Msa0588040:intron 55.0%
TGATGTCGCAGCCCAGATCG+TGG - chr4_2:10148855-10148874 Msa0588040:exon 60.0%
TGCAGGCATGGTCAAACGGG+AGG - chr4_2:10148968-10148987 Msa0588040:CDS 60.0%
AAAAGCTCCGGAGGAGCTGG+TGG - chr4_2:10149083-10149102 Msa0588040:CDS 60.0%
TCCTCATCCACCAGCTCCTC+CGG + chr4_2:10149093-10149112 None:intergenic 60.0%
! TTCACGCTCGAGAAGGCGTG+GGG - chr4_2:10149163-10149182 Msa0588040:intron 60.0%
TGATGTCGCAGCCCAGATCG+TGG - chr4_2:10148855-10148874 Msa0588040:exon 60.0%
TGCAGGCATGGTCAAACGGG+AGG - chr4_2:10148968-10148987 Msa0588040:CDS 60.0%
AAAAGCTCCGGAGGAGCTGG+TGG - chr4_2:10149083-10149102 Msa0588040:CDS 60.0%
TCCTCATCCACCAGCTCCTC+CGG + chr4_2:10149093-10149112 None:intergenic 60.0%
! TTCACGCTCGAGAAGGCGTG+GGG - chr4_2:10149163-10149182 Msa0588040:intron 60.0%
! TCCGGAGGAGCTGGTGGATG+AGG - chr4_2:10149089-10149108 Msa0588040:intron 65.0%
! TCACGCTCGAGAAGGCGTGG+GGG - chr4_2:10149164-10149183 Msa0588040:intron 65.0%
! TCCGGAGGAGCTGGTGGATG+AGG - chr4_2:10149089-10149108 Msa0588040:intron 65.0%
! TCACGCTCGAGAAGGCGTGG+GGG - chr4_2:10149164-10149183 Msa0588040:intron 65.0%
! CTCGAGAAGGCGTGGGGGCT+CGG - chr4_2:10149169-10149188 Msa0588040:intron 70.0%
! CTCGAGAAGGCGTGGGGGCT+CGG - chr4_2:10149169-10149188 Msa0588040:intron 70.0%
Chromosome Type Strat End Strand Name
chr4_2 gene 10148472 10149603 10148472 ID=Msa0588040;Name=Msa0588040
chr4_2 mRNA 10148472 10149603 10148472 ID=Msa0588040-mRNA-1;Parent=Msa0588040;Name=Msa0588040-mRNA-1;_AED=0.01;_eAED=0.01;_QI=24|1|1|1|1|1|2|385|170
chr4_2 exon 10148472 10149102 10148472 ID=Msa0588040-mRNA-1:exon:2822;Parent=Msa0588040-mRNA-1
chr4_2 exon 10149313 10149603 10149313 ID=Msa0588040-mRNA-1:exon:2821;Parent=Msa0588040-mRNA-1
chr4_2 five_prime_UTR 10149580 10149603 10149580 ID=Msa0588040-mRNA-1:five_prime_utr;Parent=Msa0588040-mRNA-1
chr4_2 CDS 10149313 10149579 10149313 ID=Msa0588040-mRNA-1:cds;Parent=Msa0588040-mRNA-1
chr4_2 CDS 10148857 10149102 10148857 ID=Msa0588040-mRNA-1:cds;Parent=Msa0588040-mRNA-1
chr4_2 three_prime_UTR 10148472 10148856 10148472 ID=Msa0588040-mRNA-1:three_prime_utr;Parent=Msa0588040-mRNA-1
Gene Sequence

>Msa0588040

ATGATTTTGGAAAGTTTAGGTGTTGAAAAGTACATGGAGGAACACATGAACTCAACCAATTACCATCTCAGGGTTATGAAGTACAAAGGCCCTCAAACAAGTGACACAAAACTAGGCCTCAGTCCACACACTGACAAGAACTTTGTGACCATATTGTACCAAAATCAAGTGGAAGGTTTAGAGATGATGACCAAAGATGGACAATGGATAAGCTACAAGTCTTCTTCTTCAGGCAGTTTTGTAGTTGTGATTGGTGATTCTATGCATGCATGGTCAAACGGGAGGCTGCATTCGCCATTTCACCGGGTGATGATGAGTGGGAATGAGGCAAGGTATTCAGCAGGGTTGTTCTCTACCCCCAAAGAAGGGTACATTATAAAAGCTCCGGAGGAGCTGGTGGATGAGGAGCACCCTTTGCTTTTTAAGCCTTTTGATTATGCTGAGTTCCTCAAGTATTTTCACGCTCGAGAAGGCGTGGGGGCTCGGTCTGTGCGCACTTATTGTGGTGTTTGA
Protein sequence

>Msa0588040

MILESLGVEKYMEEHMNSTNYHLRVMKYKGPQTSDTKLGLSPHTDKNFVTILYQNQVEGLEMMTKDGQWISYKSSSSGSFVVVIGDSMHAWSNGRLHSPFHRVMMSGNEARYSAGLFSTPKEGYIIKAPEELVDEEHPLLFKPFDYAEFLKYFHAREGVGARSVRTYCGV*