AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1269200

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1269200 MtrunA17_Chr4g0004071 88.947 190 19 2 27 215 126 314 5.64e-124 353
Msa1269200 MtrunA17_Chr4g0004061 82.632 190 32 1 27 215 126 315 1.53e-114 329
Msa1269200 MtrunA17_Chr7g0256741 41.026 195 104 7 27 215 127 316 4.67e-45 152
Msa1269200 MtrunA17_Chr1g0148781 42.938 177 92 5 27 197 131 304 1.45e-41 143
Msa1269200 MtrunA17_Chr3g0138351 39.665 179 101 6 27 200 127 303 9.73e-39 135
Msa1269200 MtrunA17_Chr4g0009541 36.932 176 104 5 27 197 125 298 1.93e-36 129
Msa1269200 MtrunA17_Chr4g0009561 36.932 176 104 5 27 197 128 301 1.97e-36 130
Msa1269200 MtrunA17_Chr8g0348951 34.500 200 118 6 27 215 120 317 5.73e-29 110
Msa1269200 MtrunA17_Chr5g0394071 33.333 168 101 6 29 194 5 163 7.34e-25 96.3
Msa1269200 MtrunA17_Chr7g0247741 30.882 204 132 5 2 197 93 295 2.09e-24 98.2
Msa1269200 MtrunA17_Chr8g0351101 31.053 190 127 4 25 212 175 362 2.35e-24 99.0
Msa1269200 MtrunA17_Chr8g0345831 34.615 156 99 3 47 201 177 330 1.36e-23 96.3
Msa1269200 MtrunA17_Chr8g0370711 31.053 190 120 7 28 212 169 352 3.50e-23 95.5
Msa1269200 MtrunA17_Chr1g0184151 29.379 177 123 2 27 203 154 328 5.33e-23 94.7
Msa1269200 MtrunA17_Chr5g0420721 32.973 185 120 4 27 209 63 245 8.61e-23 92.8
Msa1269200 MtrunA17_Chr7g0265221 33.158 190 110 5 27 202 182 368 3.01e-22 93.2
Msa1269200 MtrunA17_Chr4g0037611 32.298 161 99 5 36 194 1 153 7.87e-22 88.6
Msa1269200 MtrunA17_Chr1g0184121 28.877 187 130 3 27 212 153 337 8.30e-22 91.7
Msa1269200 MtrunA17_Chr3g0128001 32.022 178 117 4 27 202 150 325 1.00e-21 91.3
Msa1269200 MtrunA17_Chr7g0233661 35.252 139 82 3 56 194 7 137 1.04e-21 87.4
Msa1269200 MtrunA17_Chr1g0184161 30.636 173 116 4 27 198 154 323 1.33e-21 90.9
Msa1269200 MtrunA17_Chr5g0412651 37.405 131 78 3 76 204 207 335 1.51e-21 90.9
Msa1269200 MtrunA17_Chr1g0184111 30.508 177 119 4 27 201 153 327 3.09e-21 90.1
Msa1269200 MtrunA17_Chr4g0045441 32.000 175 115 4 24 195 154 327 1.18e-20 88.6
Msa1269200 MtrunA17_Chr5g0412681 29.143 175 117 5 31 200 146 318 1.21e-20 88.2
Msa1269200 MtrunA17_Chr1g0204181 32.558 172 113 3 27 197 184 353 1.23e-20 88.6
Msa1269200 MtrunA17_Chr6g0474391 30.481 187 127 3 27 212 189 373 1.61e-20 88.6
Msa1269200 MtrunA17_Chr3g0145171 31.098 164 108 4 28 188 169 330 1.70e-20 88.2
Msa1269200 MtrunA17_Chr3g0130391 28.090 178 123 4 32 206 196 371 3.06e-20 87.8
Msa1269200 MtrunA17_Chr8g0384461 29.480 173 114 5 29 197 171 339 5.15e-20 86.7
Msa1269200 MtrunA17_Chr5g0407731 32.461 191 111 6 25 202 139 324 6.29e-20 86.3
Msa1269200 MtrunA17_Chr1g0162361 28.796 191 123 5 15 194 130 318 8.42e-20 85.9
Msa1269200 MtrunA17_Chr5g0407781 32.759 174 110 5 25 196 111 279 1.10e-19 85.1
Msa1269200 MtrunA17_Chr1g0162351 28.655 171 119 3 27 195 203 372 1.44e-19 85.9
Msa1269200 MtrunA17_Chr5g0421041 32.044 181 119 4 27 205 159 337 1.65e-19 85.1
Msa1269200 MtrunA17_Chr8g0370721 30.000 190 122 7 28 212 169 352 1.88e-19 85.1
Msa1269200 MtrunA17_Chr7g0250511 31.034 174 117 3 39 211 177 348 2.81e-19 84.7
Msa1269200 MtrunA17_Chr7g0239101 30.270 185 117 5 27 205 169 347 5.75e-19 84.0
Msa1269200 MtrunA17_Chr4g0045471 30.588 170 114 3 29 195 160 328 5.87e-19 83.6
Msa1269200 MtrunA17_Chr5g0412671 35.385 130 80 3 76 203 207 334 6.67e-19 83.6
Msa1269200 MtrunA17_Chr1g0162321 28.070 171 120 3 27 195 203 372 9.80e-19 83.6
Msa1269200 MtrunA17_Chr2g0319491 29.167 168 110 4 28 194 146 305 2.62e-18 81.6
Msa1269200 MtrunA17_Chr5g0424201 35.156 128 81 2 68 195 202 327 2.93e-18 81.6
Msa1269200 MtrunA17_Chr4g0064781 29.843 191 121 6 7 187 136 323 3.10e-18 81.6
Msa1269200 MtrunA17_Chr4g0045431 30.178 169 115 3 29 195 160 327 3.10e-18 81.6
Msa1269200 MtrunA17_Chr5g0423191 34.286 140 89 3 67 205 202 339 3.61e-18 81.6
Msa1269200 MtrunA17_Chr8g0371921 30.814 172 115 4 27 196 156 325 4.10e-18 81.6
Msa1269200 MtrunA17_Chr6g0463821 38.983 118 50 4 27 137 42 144 4.56e-18 78.2
Msa1269200 MtrunA17_Chr7g0220011 32.768 177 114 5 27 201 152 325 5.04e-18 80.9
Msa1269200 MtrunA17_Chr8g0384481 28.108 185 129 4 32 214 185 367 5.55e-18 81.3
Msa1269200 MtrunA17_Chr1g0184101 29.944 177 122 2 27 203 154 328 5.84e-18 80.9
Msa1269200 MtrunA17_Chr1g0191201 28.144 167 117 3 32 197 183 347 6.03e-18 81.3
Msa1269200 MtrunA17_Chr7g0242551 29.798 198 126 6 19 211 170 359 6.41e-18 80.9
Msa1269200 MtrunA17_Chr5g0423251 29.834 181 123 4 27 205 161 339 1.20e-17 80.1
Msa1269200 MtrunA17_Chr3g0109041 27.660 188 129 4 27 209 162 347 1.27e-17 80.1
Msa1269200 MtrunA17_Chr1g0179801 29.231 195 123 6 15 202 175 361 1.75e-17 79.7
Msa1269200 MtrunA17_Chr5g0423211 37.984 129 76 4 68 195 206 331 2.30e-17 79.3
Msa1269200 MtrunA17_Chr5g0420881 36.364 132 80 4 71 200 1 130 3.06e-17 75.5
Msa1269200 MtrunA17_Chr2g0311681 30.412 194 124 7 27 212 177 367 3.20e-17 79.0
Msa1269200 MtrunA17_Chr6g0455481 30.337 178 117 5 27 201 156 329 3.34e-17 78.6
Msa1269200 MtrunA17_Chr4g0006371 28.042 189 129 5 28 211 181 367 3.45e-17 79.0
Msa1269200 MtrunA17_Chr2g0332191 28.804 184 119 4 27 199 160 342 3.50e-17 79.0
Msa1269200 MtrunA17_Chr2g0293931 29.121 182 113 5 28 196 9 187 3.63e-17 76.6
Msa1269200 MtrunA17_Chr1g0194321 32.258 124 83 1 77 200 197 319 4.30e-17 78.6
Msa1269200 MtrunA17_Chr8g0375701 33.333 177 114 4 27 201 168 342 5.56e-17 78.2
Msa1269200 MtrunA17_Chr7g0239111 29.213 178 122 4 27 202 169 344 6.57e-17 78.2
Msa1269200 MtrunA17_Chr8g0371931 31.214 173 113 5 27 196 156 325 1.03e-16 77.4
Msa1269200 MtrunA17_Chr4g0045451 30.769 169 114 3 29 195 160 327 1.25e-16 77.4
Msa1269200 MtrunA17_Chr3g0102041 31.214 173 113 5 27 196 156 325 1.43e-16 77.0
Msa1269200 MtrunA17_Chr2g0296371 30.303 198 133 4 15 209 156 351 1.70e-16 77.0
Msa1269200 MtrunA17_Chr3g0125421 29.231 130 90 2 68 197 203 330 1.92e-16 76.6
Msa1269200 MtrunA17_Chr4g0050031 30.460 174 115 5 27 196 177 348 2.19e-16 76.6
Msa1269200 MtrunA17_Chr3g0126761 32.895 152 96 4 47 195 65 213 2.88e-16 74.7
Msa1269200 MtrunA17_Chr2g0314401 31.492 181 120 4 27 205 167 345 2.93e-16 76.3
Msa1269200 MtrunA17_Chr5g0421011 33.108 148 96 3 59 205 194 339 3.28e-16 76.3
Msa1269200 MtrunA17_Chr2g0311741 26.596 188 133 5 27 212 141 325 3.41e-16 75.9
Msa1269200 MtrunA17_Chr3g0093761 34.375 128 80 4 84 209 223 348 3.45e-16 75.9
Msa1269200 MtrunA17_Chr5g0420901 36.029 136 83 4 68 201 202 335 3.62e-16 75.9
Msa1269200 MtrunA17_Chr5g0423201 29.480 173 111 5 42 205 170 340 4.50e-16 75.9
Msa1269200 MtrunA17_Chr4g0068891 28.814 177 115 4 29 196 129 303 4.58e-16 75.5
Msa1269200 MtrunA17_Chr2g0311691 26.804 194 131 5 27 212 177 367 5.59e-16 75.5
Msa1269200 MtrunA17_Chr5g0421101 34.266 143 91 3 68 209 203 343 5.77e-16 75.5
Msa1269200 MtrunA17_Chr8g0365241 29.282 181 124 4 27 205 172 350 5.92e-16 75.5
Msa1269200 MtrunA17_Chr3g0145181 27.811 169 116 5 28 192 169 335 6.33e-16 75.1
Msa1269200 MtrunA17_Chr4g0045461 31.788 151 102 1 45 194 175 325 6.44e-16 75.5
Msa1269200 MtrunA17_Chr7g0239821 28.141 199 127 6 27 215 178 370 7.00e-16 75.1
Msa1269200 MtrunA17_Chr2g0314381 30.387 181 122 4 27 205 193 371 8.78e-16 75.1
Msa1269200 MtrunA17_Chr3g0093741 33.333 129 82 4 84 210 224 350 9.23e-16 74.7
Msa1269200 MtrunA17_Chr7g0235951 25.907 193 134 5 27 212 181 371 1.62e-15 74.3
Msa1269200 MtrunA17_Chr1g0148771 31.081 148 97 4 27 171 171 316 1.62e-15 74.3
Msa1269200 MtrunA17_Chr4g0045411 28.655 171 117 4 27 194 157 325 1.82e-15 73.9
Msa1269200 MtrunA17_Chr4g0055911 31.757 148 94 4 54 195 154 300 1.92e-15 73.6
Msa1269200 MtrunA17_Chr1g0162191 34.591 159 100 4 38 194 174 330 2.34e-15 73.6
Msa1269200 MtrunA17_Chr5g0439011 30.542 203 114 11 16 202 108 299 2.36e-15 73.2
Msa1269200 MtrunA17_Chr3g0113641 26.984 189 132 4 27 211 168 354 2.40e-15 73.6
Msa1269200 MtrunA17_Chr2g0311701 26.154 195 131 6 27 212 183 373 2.57e-15 73.6
Msa1269200 MtrunA17_Chr5g0424211 32.759 116 76 2 68 183 202 315 2.68e-15 73.2
Msa1269200 MtrunA17_Chr5g0423221 32.168 143 94 3 68 209 228 368 2.73e-15 73.6
Msa1269200 MtrunA17_Chr7g0239121 30.216 139 95 2 68 205 207 344 3.04e-15 73.6
Msa1269200 MtrunA17_Chr6g0488511 32.075 159 99 5 27 177 110 267 3.04e-15 72.8
Msa1269200 MtrunA17_Chr7g0266651 29.787 188 115 8 34 208 172 355 3.73e-15 73.2
Msa1269200 MtrunA17_Chr3g0145201 27.811 169 116 5 28 192 804 970 4.58e-15 73.6
Msa1269200 MtrunA17_Chr5g0420951 32.353 136 89 3 68 202 210 343 4.64e-15 72.8
Msa1269200 MtrunA17_Chr5g0420941 34.615 130 82 3 68 196 201 328 4.89e-15 72.8
Msa1269200 MtrunA17_Chr3g0093751 33.333 129 82 4 84 210 224 350 5.40e-15 72.8
Msa1269200 MtrunA17_Chr2g0289341 28.877 187 120 7 27 202 112 296 5.93e-15 72.4
Msa1269200 MtrunA17_Chr5g0437181 26.984 189 132 4 27 211 167 353 6.68e-15 72.4
Msa1269200 MtrunA17_Chr5g0420981 28.177 181 126 4 27 205 168 346 7.09e-15 72.4
Msa1269200 MtrunA17_Chr4g0064771 28.916 166 113 4 25 187 25 188 7.19e-15 70.5
Msa1269200 MtrunA17_Chr5g0405411 29.070 172 118 4 27 196 156 325 7.70e-15 72.0
Msa1269200 MtrunA17_Chr5g0407591 43.836 73 39 2 123 194 15 86 1.44e-14 67.4
Msa1269200 MtrunA17_Chr8g0375671 27.536 207 142 5 1 205 148 348 1.70e-14 71.2
Msa1269200 MtrunA17_Chr3g0114861 30.709 127 86 2 68 194 197 321 1.81e-14 70.9
Msa1269200 MtrunA17_Chr8g0358941 33.898 118 77 1 83 200 203 319 1.82e-14 70.9
Msa1269200 MtrunA17_Chr6g0486831 28.652 178 116 6 27 195 146 321 2.52e-14 70.5
Msa1269200 MtrunA17_Chr7g0239071 31.884 138 91 3 69 205 157 292 3.50e-14 70.1
Msa1269200 MtrunA17_Chr3g0092531 31.148 122 81 3 42 162 135 254 3.67e-14 70.1
Msa1269200 MtrunA17_Chr3g0092581 30.328 122 82 3 42 162 7 126 5.83e-14 67.4
Msa1269200 MtrunA17_Chr5g0426891 30.263 152 101 5 54 202 181 330 6.48e-14 69.3
Msa1269200 MtrunA17_Chr8g0389941 26.966 178 119 6 27 195 157 332 6.70e-14 69.3
Msa1269200 MtrunA17_Chr7g0220001 29.885 174 117 5 27 198 154 324 8.53e-14 68.9
Msa1269200 MtrunA17_Chr8g0336851 25.263 190 136 6 27 212 175 362 9.61e-14 68.9
Msa1269200 MtrunA17_Chr8g0375681 29.518 166 108 6 39 202 115 273 1.14e-13 68.6
Msa1269200 MtrunA17_Chr5g0398291 35.088 114 71 3 83 195 227 338 1.22e-13 68.9
Msa1269200 MtrunA17_Chr2g0314391 28.342 187 118 6 27 205 186 364 1.41e-13 68.6
Msa1269200 MtrunA17_Chr1g0187831 27.419 186 128 5 32 212 189 372 1.45e-13 68.6
Msa1269200 MtrunA17_Chr8g0375601 27.374 179 126 4 29 205 167 343 1.93e-13 68.2
Msa1269200 MtrunA17_Chr8g0336861 25.824 182 129 6 32 209 181 360 2.66e-13 67.8
Msa1269200 MtrunA17_Chr8g0364471 24.352 193 137 5 27 212 181 371 3.80e-13 67.4
Msa1269200 MtrunA17_Chr8g0375571 28.177 181 126 4 27 205 163 341 6.55e-13 66.6
Msa1269200 MtrunA17_Chr4g0052251 30.973 113 76 2 83 194 202 313 9.02e-13 66.2
Msa1269200 MtrunA17_Chr4g0075471 30.303 132 89 3 50 180 9 138 1.42e-12 63.2
Msa1269200 MtrunA17_Chr3g0126741 35.398 113 70 3 83 195 233 342 2.44e-12 65.1
Msa1269200 MtrunA17_Chr7g0239091 26.590 173 123 4 27 197 264 434 3.24e-12 64.7
Msa1269200 MtrunA17_Chr5g0421091 30.108 186 112 6 16 200 165 333 3.42e-12 64.7
Msa1269200 MtrunA17_Chr2g0285931 30.508 118 79 3 83 199 203 318 3.53e-12 64.3
Msa1269200 MtrunA17_Chr1g0184241 23.810 189 139 4 23 209 177 362 8.64e-12 63.5
Msa1269200 MtrunA17_Chr5g0409631 44.444 63 33 2 133 194 1 62 9.07e-12 59.3
Msa1269200 MtrunA17_Chr7g0265351 28.125 160 110 3 51 209 177 332 1.55e-11 62.8
Msa1269200 MtrunA17_Chr3g0087031 25.843 178 128 4 27 202 174 349 3.34e-11 61.6
Msa1269200 MtrunA17_Chr2g0313111 32.143 112 74 2 83 194 196 305 3.76e-11 61.6
Msa1269200 MtrunA17_Chr2g0311631 27.174 184 116 6 35 203 172 352 4.44e-11 61.2
Msa1269200 MtrunA17_Chr7g0236011 26.943 193 132 5 27 212 181 371 4.80e-11 61.2
Msa1269200 MtrunA17_Chr8g0336801 30.075 133 87 5 83 212 24 153 5.77e-11 58.9
Msa1269200 MtrunA17_Chr8g0336781 23.243 185 135 6 32 212 216 397 7.70e-11 60.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1269200 AT1G52820.1 61.905 189 70 2 28 215 130 317 9.59e-84 251
Msa1269200 AT4G03070.1 55.026 189 78 2 27 209 128 315 3.89e-70 217
Msa1269200 AT1G28030.1 48.469 196 92 5 27 215 129 322 9.78e-61 193
Msa1269200 AT1G52790.1 42.328 189 106 2 27 214 123 309 6.94e-52 170
Msa1269200 AT1G52800.1 43.386 189 103 3 28 215 129 314 6.22e-51 167
Msa1269200 AT1G80320.1 38.462 195 111 4 27 215 127 318 4.51e-42 145
Msa1269200 AT4G03050.2 47.826 138 69 3 80 215 271 407 8.72e-42 146
Msa1269200 AT4G03050.1 47.826 138 69 3 80 215 271 407 8.72e-42 146
Msa1269200 AT1G52820.2 62.037 108 40 1 28 135 130 236 9.15e-41 140
Msa1269200 AT1G52810.1 39.175 194 80 6 27 215 129 289 6.42e-35 125
Msa1269200 AT1G15540.2 38.660 194 110 6 27 215 133 322 5.71e-34 124
Msa1269200 AT1G15540.1 38.660 194 110 6 27 215 130 319 5.79e-34 124
Msa1269200 AT1G15540.4 38.660 194 110 6 27 215 130 319 5.79e-34 124
Msa1269200 AT1G15540.3 38.660 194 110 6 27 215 137 326 5.92e-34 124
Msa1269200 AT4G23340.2 35.882 170 99 4 41 202 14 181 2.08e-25 98.6
Msa1269200 AT4G23340.1 35.135 185 109 5 27 202 117 299 2.42e-25 101
Msa1269200 AT2G36690.2 33.143 175 111 5 31 202 180 351 6.29e-22 92.4
Msa1269200 AT2G36690.1 33.143 175 111 5 31 202 180 351 6.29e-22 92.4
Msa1269200 AT5G24530.1 33.889 180 112 5 27 201 150 327 7.24e-22 92.0
Msa1269200 AT5G51810.1 31.183 186 124 4 14 197 169 352 4.59e-21 90.1
Msa1269200 AT5G51310.1 30.052 193 114 5 29 202 114 304 2.27e-20 87.8
Msa1269200 AT4G10490.1 30.337 178 112 5 31 198 154 329 7.53e-20 86.7
Msa1269200 AT4G21200.1 33.333 147 95 3 28 173 154 298 1.48e-19 85.5
Msa1269200 AT5G07200.1 34.228 149 95 3 32 179 189 335 2.35e-19 85.5
Msa1269200 AT4G25420.1 31.138 167 112 3 32 197 190 354 2.86e-19 85.1
Msa1269200 AT5G05600.1 31.579 190 124 5 27 212 180 367 4.41e-19 84.7
Msa1269200 AT1G78550.2 29.282 181 124 4 27 205 91 269 2.58e-18 81.3
Msa1269200 AT1G78550.1 29.282 181 124 4 27 205 169 347 7.58e-18 81.3
Msa1269200 AT5G20550.1 29.947 187 122 7 27 206 162 346 4.28e-17 79.0
Msa1269200 AT1G44090.1 29.891 184 116 6 18 197 183 357 4.45e-17 79.0
Msa1269200 AT4G16330.1 28.261 184 125 5 27 209 76 253 4.61e-17 77.8
Msa1269200 AT3G51240.2 31.609 174 113 5 32 202 76 246 7.35e-17 77.4
Msa1269200 AT1G50960.1 35.507 138 86 3 29 165 156 291 7.46e-17 78.2
Msa1269200 AT3G51240.1 31.609 174 113 5 32 202 160 330 1.12e-16 77.8
Msa1269200 AT1G60980.1 28.866 194 131 5 6 197 163 351 1.13e-16 77.8
Msa1269200 AT1G30040.1 27.119 177 117 4 27 194 139 312 1.74e-16 77.0
Msa1269200 AT3G21420.1 29.843 191 127 6 24 209 169 357 1.80e-16 77.4
Msa1269200 AT4G16330.2 28.261 184 125 5 27 209 182 359 2.08e-16 77.0
Msa1269200 AT3G13610.1 34.848 132 82 4 80 209 227 356 2.32e-16 77.0
Msa1269200 AT1G15550.1 27.368 190 126 3 18 196 151 339 2.64e-16 76.6
Msa1269200 AT5G54000.1 33.540 161 98 6 45 199 101 258 3.38e-16 75.5
Msa1269200 AT2G38240.1 31.746 189 120 7 27 209 161 346 3.95e-16 76.3
Msa1269200 AT5G54000.2 33.540 161 98 6 45 199 181 338 6.29e-16 75.5
Msa1269200 AT1G03410.1 30.000 180 119 6 27 201 209 386 7.02e-16 75.9
Msa1269200 AT5G43440.1 27.273 176 122 4 23 194 172 345 7.60e-16 75.5
Msa1269200 AT1G03410.2 30.000 180 119 6 27 201 172 349 8.53e-16 75.5
Msa1269200 AT3G60290.1 29.947 187 126 5 27 211 168 351 8.94e-16 75.1
Msa1269200 AT1G02400.1 32.759 116 76 2 82 196 197 311 1.17e-15 74.7
Msa1269200 AT3G19010.1 30.128 156 98 4 45 194 173 323 1.68e-15 74.3
Msa1269200 AT3G19010.4 30.128 156 98 4 45 194 173 323 1.68e-15 74.3
Msa1269200 AT1G06620.1 26.923 182 121 5 27 201 176 352 3.21e-15 73.6
Msa1269200 AT2G44800.1 28.877 187 128 5 27 211 168 351 5.99e-15 72.8
Msa1269200 AT4G10500.1 27.225 191 128 5 31 212 156 344 6.03e-15 72.8
Msa1269200 AT1G55290.1 31.250 128 86 2 83 209 230 356 9.36e-15 72.4
Msa1269200 AT2G34555.1 25.862 174 122 3 27 194 135 307 1.08e-14 72.0
Msa1269200 AT4G16765.6 28.652 178 118 6 27 196 61 237 1.50e-14 70.5
Msa1269200 AT4G16765.1 28.652 178 118 6 27 196 61 237 1.50e-14 70.5
Msa1269200 AT4G16765.2 28.652 178 118 6 27 196 61 237 1.50e-14 70.5
Msa1269200 AT4G21690.1 34.483 116 70 3 83 195 221 333 1.69e-14 71.6
Msa1269200 AT1G06650.2 28.571 175 118 6 32 201 184 356 1.72e-14 71.6
Msa1269200 AT5G20400.1 29.609 179 117 7 27 199 162 337 1.93e-14 71.2
Msa1269200 AT5G07480.2 28.492 179 119 5 27 198 52 228 2.03e-14 70.5
Msa1269200 AT3G55970.1 26.738 187 128 4 27 208 170 352 2.74e-14 71.2
Msa1269200 AT5G59530.1 28.750 160 108 5 32 187 180 337 2.95e-14 70.9
Msa1269200 AT3G19010.3 30.469 128 87 2 68 194 167 293 3.10e-14 70.5
Msa1269200 AT1G47990.1 32.479 117 77 2 81 196 186 301 3.46e-14 70.5
Msa1269200 AT5G08640.2 31.788 151 93 4 44 194 185 325 3.75e-14 70.5
Msa1269200 AT5G08640.1 31.788 151 93 4 44 194 185 325 3.75e-14 70.5
Msa1269200 AT2G19590.2 30.189 159 101 4 27 178 102 257 4.10e-14 70.1
Msa1269200 AT5G07480.1 28.492 179 119 5 27 198 161 337 4.15e-14 70.5
Msa1269200 AT1G80340.1 29.221 154 102 2 48 195 179 331 4.43e-14 70.5
Msa1269200 AT4G25310.1 29.609 179 121 5 27 202 165 341 5.27e-14 70.1
Msa1269200 AT1G14130.1 34.127 126 82 1 67 191 155 280 5.98e-14 69.7
Msa1269200 AT2G19590.1 30.189 159 101 4 27 178 117 272 6.57e-14 69.7
Msa1269200 AT5G43450.1 26.923 182 127 5 23 200 169 348 9.86e-14 69.3
Msa1269200 AT1G14120.2 29.570 186 123 3 25 204 114 297 9.95e-14 68.9
Msa1269200 AT1G14120.1 29.570 186 123 3 25 204 114 297 9.95e-14 68.9
Msa1269200 AT1G14120.3 29.570 186 123 3 25 204 114 297 9.95e-14 68.9
Msa1269200 AT5G59540.1 28.070 171 117 5 32 198 182 350 1.18e-13 69.3
Msa1269200 AT5G63600.2 28.571 175 115 6 27 195 141 311 1.28e-13 68.9
Msa1269200 AT1G78440.1 32.143 112 75 1 83 194 192 302 1.34e-13 68.9
Msa1269200 AT3G61400.1 28.022 182 124 5 27 202 179 359 1.36e-13 68.9
Msa1269200 AT3G11180.1 27.368 190 132 5 27 212 209 396 2.65e-13 68.6
Msa1269200 AT4G16765.5 34.483 116 72 2 84 196 77 191 3.47e-13 66.2
Msa1269200 AT5G63600.1 28.161 174 116 5 27 195 141 310 3.61e-13 67.8
Msa1269200 AT4G22880.1 32.000 125 81 4 74 197 219 340 4.46e-13 67.4
Msa1269200 AT4G22880.2 32.000 125 81 4 74 197 219 340 4.46e-13 67.4
Msa1269200 AT4G22880.3 32.000 125 81 4 74 197 219 340 4.46e-13 67.4
Msa1269200 AT3G19000.1 27.660 188 125 4 18 195 143 329 5.02e-13 67.4
Msa1269200 AT1G49390.2 29.091 165 110 5 27 187 83 244 6.39e-13 66.2
Msa1269200 AT3G11180.2 26.943 193 135 5 27 215 209 399 8.43e-13 67.0
Msa1269200 AT1G49390.1 35.455 110 66 4 80 187 217 323 1.26e-12 66.2
Msa1269200 AT4G16765.3 29.091 165 108 6 27 183 61 224 1.50e-12 65.1
Msa1269200 AT5G43935.1 28.358 134 91 3 62 195 155 283 1.96e-12 65.5
Msa1269200 AT5G43440.2 31.897 116 76 3 23 137 172 285 4.07e-12 64.3
Msa1269200 AT2G30840.1 26.257 179 126 6 27 201 173 349 6.40e-12 64.3
Msa1269200 AT3G12900.1 24.000 175 129 3 37 209 179 351 1.17e-11 63.5
Msa1269200 AT1G04350.1 28.191 188 123 9 17 198 164 345 1.71e-11 63.2

Find 71 sgRNAs with CRISPR-Local

Find 238 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTAAACCTTCCACTTGATTT+TGG 0.165013 8_3:-2397991 None:intergenic
CTCCTCGGAGAAGGAATTTA+TGG 0.165333 8_3:-2397780 None:intergenic
ACACATCATATATATATTTA+TGG 0.191669 8_3:-2398726 None:intergenic
TTTATAATGTACCCTTCTTT+GGG 0.224285 8_3:-2398399 None:intergenic
CATAACCCTGAGATGGTAAT+TGG 0.227792 8_3:-2397888 None:intergenic
GCTTATCCATTGTCCATCTT+TGG 0.274641 8_3:-2398023 None:intergenic
TATATGTTGTTTGCATTCAT+TGG 0.322888 8_3:+2398797 Msa1269200:three_prime_UTR
AGCTACAAGTCTTCTTCTTC+AGG 0.328794 8_3:+2398043 Msa1269200:CDS
ATGCTTACAATTGGTAACTA+TGG 0.333158 8_3:+2397095 Msa1269200:CDS
CTCATCATCACCCGGTGAAA+TGG 0.378285 8_3:-2398336 None:intergenic
AATTACACCGGTGTTACGTC+TGG 0.386685 8_3:+2398576 Msa1269200:three_prime_UTR
GGCTGCATTCGCCATTTCAC+CGG 0.398369 8_3:+2398325 Msa1269200:CDS
CTATAGCTTATGTTATTAAG+AGG 0.409102 8_3:+2398698 Msa1269200:three_prime_UTR
TCCTCATCCACCAGCTCCTC+CGG 0.417316 8_3:-2398426 None:intergenic
ACTCAACCAATTACCATCTC+AGG 0.428477 8_3:+2397882 Msa1269200:CDS
TCCGGAGGAGCTGGTGGATG+AGG 0.453378 8_3:+2398425 Msa1269200:CDS
AACTATAGAGCGAGATTTGT+AGG 0.460124 8_3:-2397118 None:intergenic
TATAAAAGCTCCGGAGGAGC+TGG 0.478262 8_3:+2398416 Msa1269200:CDS
CTCAATTAGCTCCTCGGAGA+AGG 0.480469 8_3:-2397789 None:intergenic
GATTGAAACATGCTTACAAT+TGG 0.482688 8_3:+2397086 None:intergenic
AATCTCGCTCTATAGTTCCT+TGG 0.493020 8_3:+2397124 Msa1269200:CDS
CTCCGAGGAGCTAATTGAGT+TGG 0.496308 8_3:+2397793 Msa1269200:CDS
AGGAACTCAGCATAATCAAA+AGG 0.497152 8_3:-2398468 None:intergenic
CTTGGAACTTAAGAAACTGT+TGG 0.497413 8_3:+2397142 Msa1269200:CDS
ATCCAACTCAATTAGCTCCT+CGG 0.499257 8_3:-2397795 None:intergenic
ATAGCTCAAACCCATCCCTT+TGG 0.499909 8_3:-2398679 None:intergenic
CAACAGTTTCTTAAGTTCCA+AGG 0.503291 8_3:-2397141 None:intergenic
CGGTCTGTGCGCACTTATTG+TGG 0.509968 8_3:+2398525 Msa1269200:CDS
CTACTCTCATGAAGGCCAAA+GGG 0.512486 8_3:+2398664 Msa1269200:three_prime_UTR
AGGGTACATTATAAAAGCTC+CGG 0.518778 8_3:+2398407 Msa1269200:CDS
TTTCACGCTCGAGAAGGCGT+GGG 0.522167 8_3:+2398498 Msa1269200:CDS
TTTAGGTGTTGAAAAGTACA+TGG 0.523921 8_3:+2397847 Msa1269200:CDS
GCTGCATTCGCCATTTCACC+GGG 0.528558 8_3:+2398326 Msa1269200:CDS
TTCACGCTCGAGAAGGCGTG+GGG 0.534148 8_3:+2398499 Msa1269200:CDS
AATGAGGCAAGGTATTCAGC+AGG 0.534999 8_3:+2398363 Msa1269200:CDS
CTCATGAAGGCCAAAGGGAT+GGG 0.539788 8_3:+2398669 Msa1269200:three_prime_UTR
TCTCATGAAGGCCAAAGGGA+TGG 0.541383 8_3:+2398668 Msa1269200:three_prime_UTR
TTATAATGTACCCTTCTTTG+GGG 0.548996 8_3:-2398398 None:intergenic
CAAACAAGTGACACAAAACT+AGG 0.550916 8_3:+2397926 Msa1269200:CDS
AAAAGCTCCGGAGGAGCTGG+TGG 0.554268 8_3:+2398419 Msa1269200:CDS
TTGTACCAAAATCAAGTGGA+AGG 0.554694 8_3:+2397986 Msa1269200:CDS
TTAGAGATGATGACCAAAGA+TGG 0.562948 8_3:+2398010 Msa1269200:CDS
TGTACTTCATAACCCTGAGA+TGG 0.565517 8_3:-2397895 None:intergenic
TATAGCTTATGTTATTAAGA+GGG 0.570560 8_3:+2398699 Msa1269200:three_prime_UTR
CATATTGTACCAAAATCAAG+TGG 0.585592 8_3:+2397982 Msa1269200:CDS
AAGTATTACTACTCTCATGA+AGG 0.588140 8_3:+2398656 Msa1269200:three_prime_UTR
TTTCACCGGGTGATGATGAG+TGG 0.590400 8_3:+2398339 Msa1269200:CDS
CATTCCCACTCATCATCACC+CGG 0.593548 8_3:-2398344 None:intergenic
ACAAAGTTCTTGTCAGTGTG+TGG 0.594909 8_3:-2397956 None:intergenic
TGTAATTTGAGCAGTAAATG+TGG 0.597446 8_3:-2398560 None:intergenic
TATAATGTACCCTTCTTTGG+GGG 0.599958 8_3:-2398397 None:intergenic
CTCGAGCGTGAAAATACTTG+AGG 0.604032 8_3:-2398488 None:intergenic
CTCAACCAATTACCATCTCA+GGG 0.604591 8_3:+2397883 Msa1269200:CDS
TGCAGGCATGGTCAAACGGG+AGG 0.605635 8_3:+2398304 Msa1269200:intron
ACTACTCTCATGAAGGCCAA+AGG 0.608150 8_3:+2398663 Msa1269200:three_prime_UTR
TTCACCGGGTGATGATGAGT+GGG 0.609819 8_3:+2398340 Msa1269200:CDS
TGATGACCAAAGATGGACAA+TGG 0.610775 8_3:+2398017 Msa1269200:CDS
CAACACAATACTTCTTACAA+AGG 0.611240 8_3:-2398826 None:intergenic
GGTGATGATGAGTGGGAATG+AGG 0.615235 8_3:+2398347 Msa1269200:CDS
ATTACACCGGTGTTACGTCT+GGG 0.619845 8_3:+2398577 Msa1269200:three_prime_UTR
TCTTGTCAGTGTGTGGACTG+AGG 0.624048 8_3:-2397949 None:intergenic
CATGAGAGTAGTAATACTTG+AGG 0.629628 8_3:-2398652 None:intergenic
CTCAGGGTTATGAAGTACAA+AGG 0.637097 8_3:+2397899 Msa1269200:CDS
ATTTACTGCTCAAATTACAC+CGG 0.658724 8_3:+2398564 Msa1269200:three_prime_UTR
TGATGAGTGGGAATGAGGCA+AGG 0.659052 8_3:+2398352 Msa1269200:CDS
ACACTACCCAGACGTAACAC+CGG 0.666494 8_3:-2398583 None:intergenic
GTACATTATAAAAGCTCCGG+AGG 0.668840 8_3:+2398410 Msa1269200:CDS
ATGAGGCAAGGTATTCAGCA+GGG 0.682721 8_3:+2398364 Msa1269200:CDS
AACCATAAATTCCTTCTCCG+AGG 0.691780 8_3:+2397778 Msa1269200:CDS
TCACGCTCGAGAAGGCGTGG+GGG 0.693622 8_3:+2398500 Msa1269200:CDS
AGGTGTTGAAAAGTACATGG+AGG 0.723372 8_3:+2397850 Msa1269200:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTAAAATATTAACAACTTT+AGG - chr8_3:2397471-2397490 None:intergenic 10.0%
!!! AATTATTAAAAAGATGATTT+TGG + chr8_3:2397820-2397839 Msa1269200:CDS 10.0%
!!! TTTAAAATATTAACAACTTT+AGG - chr8_3:2397471-2397490 None:intergenic 10.0%
!!! AATTATTAAAAAGATGATTT+TGG + chr8_3:2397820-2397839 Msa1269200:CDS 10.0%
!!! TATTAGTTCTAATGATAAAT+AGG - chr8_3:2397713-2397732 None:intergenic 15.0%
!! AAAGCAAATCAAATTAATTA+GGG - chr8_3:2397750-2397769 None:intergenic 15.0%
!! AAAAGCAAATCAAATTAATT+AGG - chr8_3:2397751-2397770 None:intergenic 15.0%
!! ATTTATAAATAACCATCAAT+TGG + chr8_3:2398123-2398142 Msa1269200:intron 15.0%
!! AATAATAAATTTCAACAACA+TGG - chr8_3:2398236-2398255 None:intergenic 15.0%
!! GTTGTTGAAATTTATTATTA+TGG + chr8_3:2398237-2398256 Msa1269200:intron 15.0%
!! ACACATCATATATATATTTA+TGG - chr8_3:2398729-2398748 None:intergenic 15.0%
!!! TATTAGTTCTAATGATAAAT+AGG - chr8_3:2397713-2397732 None:intergenic 15.0%
!! AAAGCAAATCAAATTAATTA+GGG - chr8_3:2397750-2397769 None:intergenic 15.0%
!! AAAAGCAAATCAAATTAATT+AGG - chr8_3:2397751-2397770 None:intergenic 15.0%
!! ATTTATAAATAACCATCAAT+TGG + chr8_3:2398123-2398142 Msa1269200:intron 15.0%
!! AATAATAAATTTCAACAACA+TGG - chr8_3:2398236-2398255 None:intergenic 15.0%
!! GTTGTTGAAATTTATTATTA+TGG + chr8_3:2398237-2398256 Msa1269200:intron 15.0%
!! ACACATCATATATATATTTA+TGG - chr8_3:2398729-2398748 None:intergenic 15.0%
!! TATAAATGATGAATAGTGAA+TGG - chr8_3:2398110-2398129 None:intergenic 20.0%
!! TATAGCTTATGTTATTAAGA+GGG + chr8_3:2398699-2398718 Msa1269200:three_prime_UTR 20.0%
!!! ACAAATTTTTATCAAGTTCA+AGG - chr8_3:2398777-2398796 None:intergenic 20.0%
!! TATAAATGATGAATAGTGAA+TGG - chr8_3:2398110-2398129 None:intergenic 20.0%
!! TATAGCTTATGTTATTAAGA+GGG + chr8_3:2398699-2398718 Msa1269200:three_prime_UTR 20.0%
!!! ACAAATTTTTATCAAGTTCA+AGG - chr8_3:2398777-2398796 None:intergenic 20.0%
!! AAGTAAATCTATGTGTTGAT+AGG + chr8_3:2397223-2397242 Msa1269200:intron 25.0%
!!! ATGAAAGCATTCAAAATAGT+CGG - chr8_3:2397305-2397324 None:intergenic 25.0%
! TCAATCAAGATATAATGTTG+AGG - chr8_3:2397434-2397453 None:intergenic 25.0%
!!! AAGATGATTTTGGAAAGTTT+AGG + chr8_3:2397830-2397849 Msa1269200:CDS 25.0%
!! AATTCTCATGTAAATTTTGC+AGG + chr8_3:2398287-2398306 Msa1269200:intron 25.0%
! TTTATAATGTACCCTTCTTT+GGG - chr8_3:2398402-2398421 None:intergenic 25.0%
!! TTTTATAATGTACCCTTCTT+TGG - chr8_3:2398403-2398422 None:intergenic 25.0%
! CTATAGCTTATGTTATTAAG+AGG + chr8_3:2398698-2398717 Msa1269200:three_prime_UTR 25.0%
!! TATATGTTGTTTGCATTCAT+TGG + chr8_3:2398797-2398816 Msa1269200:three_prime_UTR 25.0%
!! AAGTAAATCTATGTGTTGAT+AGG + chr8_3:2397223-2397242 Msa1269200:intron 25.0%
!!! ATGAAAGCATTCAAAATAGT+CGG - chr8_3:2397305-2397324 None:intergenic 25.0%
! TCAATCAAGATATAATGTTG+AGG - chr8_3:2397434-2397453 None:intergenic 25.0%
!!! AAGATGATTTTGGAAAGTTT+AGG + chr8_3:2397830-2397849 Msa1269200:CDS 25.0%
!! AATTCTCATGTAAATTTTGC+AGG + chr8_3:2398287-2398306 Msa1269200:intron 25.0%
! TTTATAATGTACCCTTCTTT+GGG - chr8_3:2398402-2398421 None:intergenic 25.0%
!! TTTTATAATGTACCCTTCTT+TGG - chr8_3:2398403-2398422 None:intergenic 25.0%
! CTATAGCTTATGTTATTAAG+AGG + chr8_3:2398698-2398717 Msa1269200:three_prime_UTR 25.0%
!! TATATGTTGTTTGCATTCAT+TGG + chr8_3:2398797-2398816 Msa1269200:three_prime_UTR 25.0%
! ATGCTTACAATTGGTAACTA+TGG + chr8_3:2397095-2397114 Msa1269200:CDS 30.0%
TGCAAATGGACATTTATCAT+CGG + chr8_3:2397262-2397281 Msa1269200:intron 30.0%
GTCTCTTCAAACATCTTTAA+TGG + chr8_3:2397512-2397531 Msa1269200:intron 30.0%
!! GTTTACAAAGTTTTATAGCC+AGG - chr8_3:2397683-2397702 None:intergenic 30.0%
!! TTTAGGTGTTGAAAAGTACA+TGG + chr8_3:2397847-2397866 Msa1269200:CDS 30.0%
!! CACTTGATTTTGGTACAATA+TGG - chr8_3:2397984-2398003 None:intergenic 30.0%
CATATTGTACCAAAATCAAG+TGG + chr8_3:2397982-2398001 Msa1269200:CDS 30.0%
CTTCATTAGTTACCAATTGA+TGG - chr8_3:2398138-2398157 None:intergenic 30.0%
TTATAATGTACCCTTCTTTG+GGG - chr8_3:2398401-2398420 None:intergenic 30.0%
CAAAAGGCTTAAAAAGCAAA+GGG - chr8_3:2398455-2398474 None:intergenic 30.0%
TCAAAAGGCTTAAAAAGCAA+AGG - chr8_3:2398456-2398475 None:intergenic 30.0%
TGTAATTTGAGCAGTAAATG+TGG - chr8_3:2398563-2398582 None:intergenic 30.0%
ATTTACTGCTCAAATTACAC+CGG + chr8_3:2398564-2398583 Msa1269200:three_prime_UTR 30.0%
AAGTATTACTACTCTCATGA+AGG + chr8_3:2398656-2398675 Msa1269200:three_prime_UTR 30.0%
CAACACAATACTTCTTACAA+AGG - chr8_3:2398829-2398848 None:intergenic 30.0%
! ATGCTTACAATTGGTAACTA+TGG + chr8_3:2397095-2397114 Msa1269200:CDS 30.0%
TGCAAATGGACATTTATCAT+CGG + chr8_3:2397262-2397281 Msa1269200:intron 30.0%
GTCTCTTCAAACATCTTTAA+TGG + chr8_3:2397512-2397531 Msa1269200:intron 30.0%
!! GTTTACAAAGTTTTATAGCC+AGG - chr8_3:2397683-2397702 None:intergenic 30.0%
!! TTTAGGTGTTGAAAAGTACA+TGG + chr8_3:2397847-2397866 Msa1269200:CDS 30.0%
!! CACTTGATTTTGGTACAATA+TGG - chr8_3:2397984-2398003 None:intergenic 30.0%
CATATTGTACCAAAATCAAG+TGG + chr8_3:2397982-2398001 Msa1269200:CDS 30.0%
CTTCATTAGTTACCAATTGA+TGG - chr8_3:2398138-2398157 None:intergenic 30.0%
TTATAATGTACCCTTCTTTG+GGG - chr8_3:2398401-2398420 None:intergenic 30.0%
CAAAAGGCTTAAAAAGCAAA+GGG - chr8_3:2398455-2398474 None:intergenic 30.0%
TCAAAAGGCTTAAAAAGCAA+AGG - chr8_3:2398456-2398475 None:intergenic 30.0%
TGTAATTTGAGCAGTAAATG+TGG - chr8_3:2398563-2398582 None:intergenic 30.0%
ATTTACTGCTCAAATTACAC+CGG + chr8_3:2398564-2398583 Msa1269200:three_prime_UTR 30.0%
AAGTATTACTACTCTCATGA+AGG + chr8_3:2398656-2398675 Msa1269200:three_prime_UTR 30.0%
CAACACAATACTTCTTACAA+AGG - chr8_3:2398829-2398848 None:intergenic 30.0%
AACTATAGAGCGAGATTTGT+AGG - chr8_3:2397121-2397140 None:intergenic 35.0%
CAACAGTTTCTTAAGTTCCA+AGG - chr8_3:2397144-2397163 None:intergenic 35.0%
CTTGGAACTTAAGAAACTGT+TGG + chr8_3:2397142-2397161 Msa1269200:CDS 35.0%
GATGATAAATGTCCATTTGC+AGG - chr8_3:2397263-2397282 None:intergenic 35.0%
AATGGACATTTATCATCGGT+TGG + chr8_3:2397266-2397285 Msa1269200:intron 35.0%
! ATGGACATTTATCATCGGTT+GGG + chr8_3:2397267-2397286 Msa1269200:intron 35.0%
! AAAGCATTCAAAATAGTCGG+AGG - chr8_3:2397302-2397321 None:intergenic 35.0%
TCCTTAACAAGTTTCGTCAT+TGG + chr8_3:2397570-2397589 Msa1269200:intron 35.0%
!! TCCAATGACGAAACTTGTTA+AGG - chr8_3:2397574-2397593 None:intergenic 35.0%
!!! GTTTTGTGTCACTTGTTTGA+GGG - chr8_3:2397925-2397944 None:intergenic 35.0%
!!! AGTTTTGTGTCACTTGTTTG+AGG - chr8_3:2397926-2397945 None:intergenic 35.0%
CAAACAAGTGACACAAAACT+AGG + chr8_3:2397926-2397945 Msa1269200:CDS 35.0%
TTGTACCAAAATCAAGTGGA+AGG + chr8_3:2397986-2398005 Msa1269200:CDS 35.0%
! CTAAACCTTCCACTTGATTT+TGG - chr8_3:2397994-2398013 None:intergenic 35.0%
TTAGAGATGATGACCAAAGA+TGG + chr8_3:2398010-2398029 Msa1269200:CDS 35.0%
! TCATGTAAATTTTGCAGGCA+TGG + chr8_3:2398292-2398311 Msa1269200:intron 35.0%
TATAATGTACCCTTCTTTGG+GGG - chr8_3:2398400-2398419 None:intergenic 35.0%
AGGGTACATTATAAAAGCTC+CGG + chr8_3:2398407-2398426 Msa1269200:CDS 35.0%
AGGAACTCAGCATAATCAAA+AGG - chr8_3:2398471-2398490 None:intergenic 35.0%
CATGAGAGTAGTAATACTTG+AGG - chr8_3:2398655-2398674 None:intergenic 35.0%
AACTATAGAGCGAGATTTGT+AGG - chr8_3:2397121-2397140 None:intergenic 35.0%
CAACAGTTTCTTAAGTTCCA+AGG - chr8_3:2397144-2397163 None:intergenic 35.0%
CTTGGAACTTAAGAAACTGT+TGG + chr8_3:2397142-2397161 Msa1269200:CDS 35.0%
GATGATAAATGTCCATTTGC+AGG - chr8_3:2397263-2397282 None:intergenic 35.0%
AATGGACATTTATCATCGGT+TGG + chr8_3:2397266-2397285 Msa1269200:intron 35.0%
! ATGGACATTTATCATCGGTT+GGG + chr8_3:2397267-2397286 Msa1269200:intron 35.0%
! AAAGCATTCAAAATAGTCGG+AGG - chr8_3:2397302-2397321 None:intergenic 35.0%
TCCTTAACAAGTTTCGTCAT+TGG + chr8_3:2397570-2397589 Msa1269200:intron 35.0%
!! TCCAATGACGAAACTTGTTA+AGG - chr8_3:2397574-2397593 None:intergenic 35.0%
!!! GTTTTGTGTCACTTGTTTGA+GGG - chr8_3:2397925-2397944 None:intergenic 35.0%
!!! AGTTTTGTGTCACTTGTTTG+AGG - chr8_3:2397926-2397945 None:intergenic 35.0%
CAAACAAGTGACACAAAACT+AGG + chr8_3:2397926-2397945 Msa1269200:CDS 35.0%
TTGTACCAAAATCAAGTGGA+AGG + chr8_3:2397986-2398005 Msa1269200:CDS 35.0%
! CTAAACCTTCCACTTGATTT+TGG - chr8_3:2397994-2398013 None:intergenic 35.0%
TTAGAGATGATGACCAAAGA+TGG + chr8_3:2398010-2398029 Msa1269200:CDS 35.0%
! TCATGTAAATTTTGCAGGCA+TGG + chr8_3:2398292-2398311 Msa1269200:intron 35.0%
TATAATGTACCCTTCTTTGG+GGG - chr8_3:2398400-2398419 None:intergenic 35.0%
AGGGTACATTATAAAAGCTC+CGG + chr8_3:2398407-2398426 Msa1269200:CDS 35.0%
AGGAACTCAGCATAATCAAA+AGG - chr8_3:2398471-2398490 None:intergenic 35.0%
CATGAGAGTAGTAATACTTG+AGG - chr8_3:2398655-2398674 None:intergenic 35.0%
AATCTCGCTCTATAGTTCCT+TGG + chr8_3:2397124-2397143 Msa1269200:CDS 40.0%
AACAAGTTTCGTCATTGGAG+AGG + chr8_3:2397575-2397594 Msa1269200:intron 40.0%
CAAGTTTCTTCAAAGTGACC+TGG + chr8_3:2397662-2397681 Msa1269200:intron 40.0%
AACCATAAATTCCTTCTCCG+AGG + chr8_3:2397778-2397797 Msa1269200:CDS 40.0%
ATCCAACTCAATTAGCTCCT+CGG - chr8_3:2397798-2397817 None:intergenic 40.0%
!! AGGTGTTGAAAAGTACATGG+AGG + chr8_3:2397850-2397869 Msa1269200:CDS 40.0%
ACTCAACCAATTACCATCTC+AGG + chr8_3:2397882-2397901 Msa1269200:CDS 40.0%
CTCAACCAATTACCATCTCA+GGG + chr8_3:2397883-2397902 Msa1269200:CDS 40.0%
CATAACCCTGAGATGGTAAT+TGG - chr8_3:2397891-2397910 None:intergenic 40.0%
TGTACTTCATAACCCTGAGA+TGG - chr8_3:2397898-2397917 None:intergenic 40.0%
CTCAGGGTTATGAAGTACAA+AGG + chr8_3:2397899-2397918 Msa1269200:CDS 40.0%
ACAAAGTTCTTGTCAGTGTG+TGG - chr8_3:2397959-2397978 None:intergenic 40.0%
TGATGACCAAAGATGGACAA+TGG + chr8_3:2398017-2398036 Msa1269200:CDS 40.0%
GCTTATCCATTGTCCATCTT+TGG - chr8_3:2398026-2398045 None:intergenic 40.0%
AGCTACAAGTCTTCTTCTTC+AGG + chr8_3:2398043-2398062 Msa1269200:CDS 40.0%
!! GGCAGTTTTGTAGTTGTGAT+TGG + chr8_3:2398064-2398083 Msa1269200:CDS 40.0%
! ATTTTGCAGGCATGGTCAAA+CGG + chr8_3:2398300-2398319 Msa1269200:intron 40.0%
GTACATTATAAAAGCTCCGG+AGG + chr8_3:2398410-2398429 Msa1269200:CDS 40.0%
! AAGTATTTTCACGCTCGAGA+AGG + chr8_3:2398492-2398511 Msa1269200:CDS 40.0%
AATCTCGCTCTATAGTTCCT+TGG + chr8_3:2397124-2397143 Msa1269200:CDS 40.0%
AACAAGTTTCGTCATTGGAG+AGG + chr8_3:2397575-2397594 Msa1269200:intron 40.0%
CAAGTTTCTTCAAAGTGACC+TGG + chr8_3:2397662-2397681 Msa1269200:intron 40.0%
AACCATAAATTCCTTCTCCG+AGG + chr8_3:2397778-2397797 Msa1269200:CDS 40.0%
ATCCAACTCAATTAGCTCCT+CGG - chr8_3:2397798-2397817 None:intergenic 40.0%
!! AGGTGTTGAAAAGTACATGG+AGG + chr8_3:2397850-2397869 Msa1269200:CDS 40.0%
ACTCAACCAATTACCATCTC+AGG + chr8_3:2397882-2397901 Msa1269200:CDS 40.0%
CTCAACCAATTACCATCTCA+GGG + chr8_3:2397883-2397902 Msa1269200:CDS 40.0%
CATAACCCTGAGATGGTAAT+TGG - chr8_3:2397891-2397910 None:intergenic 40.0%
TGTACTTCATAACCCTGAGA+TGG - chr8_3:2397898-2397917 None:intergenic 40.0%
CTCAGGGTTATGAAGTACAA+AGG + chr8_3:2397899-2397918 Msa1269200:CDS 40.0%
ACAAAGTTCTTGTCAGTGTG+TGG - chr8_3:2397959-2397978 None:intergenic 40.0%
TGATGACCAAAGATGGACAA+TGG + chr8_3:2398017-2398036 Msa1269200:CDS 40.0%
GCTTATCCATTGTCCATCTT+TGG - chr8_3:2398026-2398045 None:intergenic 40.0%
AGCTACAAGTCTTCTTCTTC+AGG + chr8_3:2398043-2398062 Msa1269200:CDS 40.0%
!! GGCAGTTTTGTAGTTGTGAT+TGG + chr8_3:2398064-2398083 Msa1269200:CDS 40.0%
! ATTTTGCAGGCATGGTCAAA+CGG + chr8_3:2398300-2398319 Msa1269200:intron 40.0%
GTACATTATAAAAGCTCCGG+AGG + chr8_3:2398410-2398429 Msa1269200:CDS 40.0%
! AAGTATTTTCACGCTCGAGA+AGG + chr8_3:2398492-2398511 Msa1269200:CDS 40.0%
! GTTGATAGGCTTGCCAATCT+TGG + chr8_3:2397237-2397256 Msa1269200:intron 45.0%
CTCCTCGGAGAAGGAATTTA+TGG - chr8_3:2397783-2397802 None:intergenic 45.0%
AATGCATGTGACCACGATCT+GGG - chr8_3:2398206-2398225 None:intergenic 45.0%
AAATGCATGTGACCACGATC+TGG - chr8_3:2398207-2398226 None:intergenic 45.0%
! TTTTGCAGGCATGGTCAAAC+GGG + chr8_3:2398301-2398320 Msa1269200:intron 45.0%
! AATGAGGCAAGGTATTCAGC+AGG + chr8_3:2398363-2398382 Msa1269200:CDS 45.0%
! ATGAGGCAAGGTATTCAGCA+GGG + chr8_3:2398364-2398383 Msa1269200:CDS 45.0%
TTGTTCTCTACCCCCAAAGA+AGG + chr8_3:2398387-2398406 Msa1269200:CDS 45.0%
TGTTCTCTACCCCCAAAGAA+GGG + chr8_3:2398388-2398407 Msa1269200:CDS 45.0%
CTCGAGCGTGAAAATACTTG+AGG - chr8_3:2398491-2398510 None:intergenic 45.0%
!! AATTACACCGGTGTTACGTC+TGG + chr8_3:2398576-2398595 Msa1269200:three_prime_UTR 45.0%
!! ATTACACCGGTGTTACGTCT+GGG + chr8_3:2398577-2398596 Msa1269200:three_prime_UTR 45.0%
ACTACTCTCATGAAGGCCAA+AGG + chr8_3:2398663-2398682 Msa1269200:three_prime_UTR 45.0%
CTACTCTCATGAAGGCCAAA+GGG + chr8_3:2398664-2398683 Msa1269200:three_prime_UTR 45.0%
ATAGCTCAAACCCATCCCTT+TGG - chr8_3:2398682-2398701 None:intergenic 45.0%
! GTTGATAGGCTTGCCAATCT+TGG + chr8_3:2397237-2397256 Msa1269200:intron 45.0%
CTCCTCGGAGAAGGAATTTA+TGG - chr8_3:2397783-2397802 None:intergenic 45.0%
AATGCATGTGACCACGATCT+GGG - chr8_3:2398206-2398225 None:intergenic 45.0%
AAATGCATGTGACCACGATC+TGG - chr8_3:2398207-2398226 None:intergenic 45.0%
! TTTTGCAGGCATGGTCAAAC+GGG + chr8_3:2398301-2398320 Msa1269200:intron 45.0%
! AATGAGGCAAGGTATTCAGC+AGG + chr8_3:2398363-2398382 Msa1269200:CDS 45.0%
! ATGAGGCAAGGTATTCAGCA+GGG + chr8_3:2398364-2398383 Msa1269200:CDS 45.0%
TTGTTCTCTACCCCCAAAGA+AGG + chr8_3:2398387-2398406 Msa1269200:CDS 45.0%
TGTTCTCTACCCCCAAAGAA+GGG + chr8_3:2398388-2398407 Msa1269200:CDS 45.0%
CTCGAGCGTGAAAATACTTG+AGG - chr8_3:2398491-2398510 None:intergenic 45.0%
!! AATTACACCGGTGTTACGTC+TGG + chr8_3:2398576-2398595 Msa1269200:three_prime_UTR 45.0%
!! ATTACACCGGTGTTACGTCT+GGG + chr8_3:2398577-2398596 Msa1269200:three_prime_UTR 45.0%
ACTACTCTCATGAAGGCCAA+AGG + chr8_3:2398663-2398682 Msa1269200:three_prime_UTR 45.0%
CTACTCTCATGAAGGCCAAA+GGG + chr8_3:2398664-2398683 Msa1269200:three_prime_UTR 45.0%
ATAGCTCAAACCCATCCCTT+TGG - chr8_3:2398682-2398701 None:intergenic 45.0%
TGCCAATCTTGGCCTGCAAA+TGG + chr8_3:2397248-2397267 Msa1269200:intron 50.0%
GTCCATTTGCAGGCCAAGAT+TGG - chr8_3:2397253-2397272 None:intergenic 50.0%
CTCAATTAGCTCCTCGGAGA+AGG - chr8_3:2397792-2397811 None:intergenic 50.0%
CTCCGAGGAGCTAATTGAGT+TGG + chr8_3:2397793-2397812 Msa1269200:CDS 50.0%
! TCTTGTCAGTGTGTGGACTG+AGG - chr8_3:2397952-2397971 None:intergenic 50.0%
CTCATCATCACCCGGTGAAA+TGG - chr8_3:2398339-2398358 None:intergenic 50.0%
! TTTCACCGGGTGATGATGAG+TGG + chr8_3:2398339-2398358 Msa1269200:CDS 50.0%
! TTCACCGGGTGATGATGAGT+GGG + chr8_3:2398340-2398359 Msa1269200:CDS 50.0%
CATTCCCACTCATCATCACC+CGG - chr8_3:2398347-2398366 None:intergenic 50.0%
! GGTGATGATGAGTGGGAATG+AGG + chr8_3:2398347-2398366 Msa1269200:CDS 50.0%
TGATGAGTGGGAATGAGGCA+AGG + chr8_3:2398352-2398371 Msa1269200:CDS 50.0%
TATAAAAGCTCCGGAGGAGC+TGG + chr8_3:2398416-2398435 Msa1269200:CDS 50.0%
ACACTACCCAGACGTAACAC+CGG - chr8_3:2398586-2398605 None:intergenic 50.0%
TCTCATGAAGGCCAAAGGGA+TGG + chr8_3:2398668-2398687 Msa1269200:three_prime_UTR 50.0%
CTCATGAAGGCCAAAGGGAT+GGG + chr8_3:2398669-2398688 Msa1269200:three_prime_UTR 50.0%
TGCCAATCTTGGCCTGCAAA+TGG + chr8_3:2397248-2397267 Msa1269200:intron 50.0%
GTCCATTTGCAGGCCAAGAT+TGG - chr8_3:2397253-2397272 None:intergenic 50.0%
CTCAATTAGCTCCTCGGAGA+AGG - chr8_3:2397792-2397811 None:intergenic 50.0%
CTCCGAGGAGCTAATTGAGT+TGG + chr8_3:2397793-2397812 Msa1269200:CDS 50.0%
! TCTTGTCAGTGTGTGGACTG+AGG - chr8_3:2397952-2397971 None:intergenic 50.0%
CTCATCATCACCCGGTGAAA+TGG - chr8_3:2398339-2398358 None:intergenic 50.0%
! TTTCACCGGGTGATGATGAG+TGG + chr8_3:2398339-2398358 Msa1269200:CDS 50.0%
! TTCACCGGGTGATGATGAGT+GGG + chr8_3:2398340-2398359 Msa1269200:CDS 50.0%
CATTCCCACTCATCATCACC+CGG - chr8_3:2398347-2398366 None:intergenic 50.0%
! GGTGATGATGAGTGGGAATG+AGG + chr8_3:2398347-2398366 Msa1269200:CDS 50.0%
TGATGAGTGGGAATGAGGCA+AGG + chr8_3:2398352-2398371 Msa1269200:CDS 50.0%
TATAAAAGCTCCGGAGGAGC+TGG + chr8_3:2398416-2398435 Msa1269200:CDS 50.0%
ACACTACCCAGACGTAACAC+CGG - chr8_3:2398586-2398605 None:intergenic 50.0%
TCTCATGAAGGCCAAAGGGA+TGG + chr8_3:2398668-2398687 Msa1269200:three_prime_UTR 50.0%
CTCATGAAGGCCAAAGGGAT+GGG + chr8_3:2398669-2398688 Msa1269200:three_prime_UTR 50.0%
GGCTGCATTCGCCATTTCAC+CGG + chr8_3:2398325-2398344 Msa1269200:CDS 55.0%
GCTGCATTCGCCATTTCACC+GGG + chr8_3:2398326-2398345 Msa1269200:CDS 55.0%
! TTTTCACGCTCGAGAAGGCG+TGG + chr8_3:2398497-2398516 Msa1269200:CDS 55.0%
! TTTCACGCTCGAGAAGGCGT+GGG + chr8_3:2398498-2398517 Msa1269200:CDS 55.0%
CGGTCTGTGCGCACTTATTG+TGG + chr8_3:2398525-2398544 Msa1269200:CDS 55.0%
GGCTGCATTCGCCATTTCAC+CGG + chr8_3:2398325-2398344 Msa1269200:CDS 55.0%
GCTGCATTCGCCATTTCACC+GGG + chr8_3:2398326-2398345 Msa1269200:CDS 55.0%
! TTTTCACGCTCGAGAAGGCG+TGG + chr8_3:2398497-2398516 Msa1269200:CDS 55.0%
! TTTCACGCTCGAGAAGGCGT+GGG + chr8_3:2398498-2398517 Msa1269200:CDS 55.0%
CGGTCTGTGCGCACTTATTG+TGG + chr8_3:2398525-2398544 Msa1269200:CDS 55.0%
TGTGACCACGATCTGGGCTG+CGG - chr8_3:2398200-2398219 None:intergenic 60.0%
TGCAGGCATGGTCAAACGGG+AGG + chr8_3:2398304-2398323 Msa1269200:intron 60.0%
AAAAGCTCCGGAGGAGCTGG+TGG + chr8_3:2398419-2398438 Msa1269200:CDS 60.0%
TCCTCATCCACCAGCTCCTC+CGG - chr8_3:2398429-2398448 None:intergenic 60.0%
! TTCACGCTCGAGAAGGCGTG+GGG + chr8_3:2398499-2398518 Msa1269200:CDS 60.0%
TGTGACCACGATCTGGGCTG+CGG - chr8_3:2398200-2398219 None:intergenic 60.0%
TGCAGGCATGGTCAAACGGG+AGG + chr8_3:2398304-2398323 Msa1269200:intron 60.0%
AAAAGCTCCGGAGGAGCTGG+TGG + chr8_3:2398419-2398438 Msa1269200:CDS 60.0%
TCCTCATCCACCAGCTCCTC+CGG - chr8_3:2398429-2398448 None:intergenic 60.0%
! TTCACGCTCGAGAAGGCGTG+GGG + chr8_3:2398499-2398518 Msa1269200:CDS 60.0%
TGATGCCGCAGCCCAGATCG+TGG + chr8_3:2398192-2398211 Msa1269200:intron 65.0%
! TCCGGAGGAGCTGGTGGATG+AGG + chr8_3:2398425-2398444 Msa1269200:CDS 65.0%
! TCACGCTCGAGAAGGCGTGG+GGG + chr8_3:2398500-2398519 Msa1269200:CDS 65.0%
TGATGCCGCAGCCCAGATCG+TGG + chr8_3:2398192-2398211 Msa1269200:intron 65.0%
! TCCGGAGGAGCTGGTGGATG+AGG + chr8_3:2398425-2398444 Msa1269200:CDS 65.0%
! TCACGCTCGAGAAGGCGTGG+GGG + chr8_3:2398500-2398519 Msa1269200:CDS 65.0%
! CTCGAGAAGGCGTGGGGGCT+CGG + chr8_3:2398505-2398524 Msa1269200:CDS 70.0%
! CTCGAGAAGGCGTGGGGGCT+CGG + chr8_3:2398505-2398524 Msa1269200:CDS 70.0%
Chromosome Type Strat End Strand Name
chr8_3 gene 2397095 2398939 2397095 ID=Msa1269200;Name=Msa1269200
chr8_3 mRNA 2397095 2398939 2397095 ID=Msa1269200-mRNA-1;Parent=Msa1269200;Name=Msa1269200-mRNA-1;_AED=0.05;_eAED=0.05;_QI=0|0.5|0.66|0.66|1|1|3|385|215
chr8_3 exon 2397095 2397171 2397095 ID=Msa1269200-mRNA-1:exon:724;Parent=Msa1269200-mRNA-1
chr8_3 exon 2397775 2398099 2397775 ID=Msa1269200-mRNA-1:exon:725;Parent=Msa1269200-mRNA-1
chr8_3 exon 2398309 2398939 2398309 ID=Msa1269200-mRNA-1:exon:726;Parent=Msa1269200-mRNA-1
chr8_3 CDS 2397095 2397171 2397095 ID=Msa1269200-mRNA-1:cds;Parent=Msa1269200-mRNA-1
chr8_3 CDS 2397775 2398099 2397775 ID=Msa1269200-mRNA-1:cds;Parent=Msa1269200-mRNA-1
chr8_3 CDS 2398309 2398554 2398309 ID=Msa1269200-mRNA-1:cds;Parent=Msa1269200-mRNA-1
chr8_3 three_prime_UTR 2398555 2398939 2398555 ID=Msa1269200-mRNA-1:three_prime_utr;Parent=Msa1269200-mRNA-1
Gene Sequence

>Msa1269200

ATGCTTACAATTGGTAACTATGGCCTACAAATCTCGCTCTATAGTTCCTTGGAACTTAAGAAACTGTTGGCTCAATTTGAAACCATAAATTCCTTCTCCGAGGAGCTAATTGAGTTGGATCAAATTATTAAAAAGATGATTTTGGAAAGTTTAGGTGTTGAAAAGTACATGGAGGAACACATGAACTCAACCAATTACCATCTCAGGGTTATGAAGTACAAAGGCCCTCAAACAAGTGACACAAAACTAGGCCTCAGTCCACACACTGACAAGAACTTTGTGACCATATTGTACCAAAATCAAGTGGAAGGTTTAGAGATGATGACCAAAGATGGACAATGGATAAGCTACAAGTCTTCTTCTTCAGGCAGTTTTGTAGTTGTGATTGGTGATTCTATGCATGCATGGTCAAACGGGAGGCTGCATTCGCCATTTCACCGGGTGATGATGAGTGGGAATGAGGCAAGGTATTCAGCAGGGTTGTTCTCTACCCCCAAAGAAGGGTACATTATAAAAGCTCCGGAGGAGCTGGTGGATGAGGAGCACCCTTTGCTTTTTAAGCCTTTTGATTATGCTGAGTTCCTCAAGTATTTTCACGCTCGAGAAGGCGTGGGGGCTCGGTCTGTGCGCACTTATTGTGGTGTTTGA
Protein sequence

>Msa1269200

MLTIGNYGLQISLYSSLELKKLLAQFETINSFSEELIELDQIIKKMILESLGVEKYMEEHMNSTNYHLRVMKYKGPQTSDTKLGLSPHTDKNFVTILYQNQVEGLEMMTKDGQWISYKSSSSGSFVVVIGDSMHAWSNGRLHSPFHRVMMSGNEARYSAGLFSTPKEGYIIKAPEELVDEEHPLLFKPFDYAEFLKYFHAREGVGARSVRTYCGV*