Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0854760 | XP_003615966.1 | 93.889 | 360 | 22 | 0 | 1 | 360 | 1 | 360 | 0.0 | 698 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0854760 | sp|B0ZB57|OMT3_HUMLU | 60.556 | 360 | 136 | 3 | 6 | 360 | 19 | 377 | 4.38e-160 | 456 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0854760 | G7KFJ3 | 93.889 | 360 | 22 | 0 | 1 | 360 | 1 | 360 | 0.0 | 698 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0735010 | Msa0854760 | 0.811482 | 6.846993e-51 | -8.615850e-47 |
| Msa0819310 | Msa0854760 | 0.881907 | 1.623990e-70 | -8.615850e-47 |
| Msa0854760 | Msa1250660 | 0.801830 | 7.482835e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0854760 | MtrunA17_Chr5g0432241 | 93.889 | 360 | 22 | 0 | 1 | 360 | 1 | 360 | 0.0 | 698 |
| Msa0854760 | MtrunA17_Chr5g0432301 | 84.123 | 359 | 57 | 0 | 1 | 359 | 1 | 359 | 0.0 | 637 |
| Msa0854760 | MtrunA17_Chr5g0432251 | 81.667 | 360 | 65 | 1 | 1 | 360 | 1 | 359 | 0.0 | 610 |
| Msa0854760 | MtrunA17_Chr5g0432211 | 75.833 | 360 | 72 | 2 | 1 | 360 | 1 | 345 | 0.0 | 559 |
| Msa0854760 | MtrunA17_Chr5g0432261 | 73.611 | 360 | 62 | 3 | 1 | 360 | 1 | 327 | 0.0 | 532 |
| Msa0854760 | MtrunA17_Chr4g0040621 | 63.435 | 361 | 125 | 5 | 1 | 360 | 15 | 369 | 1.63e-165 | 467 |
| Msa0854760 | MtrunA17_Chr4g0014681 | 49.180 | 366 | 177 | 6 | 1 | 360 | 1 | 363 | 1.15e-113 | 335 |
| Msa0854760 | MtrunA17_Chr4g0014561 | 48.634 | 366 | 179 | 6 | 1 | 360 | 1 | 363 | 7.59e-112 | 330 |
| Msa0854760 | MtrunA17_Chr4g0046361 | 45.892 | 353 | 185 | 5 | 12 | 360 | 11 | 361 | 8.28e-112 | 330 |
| Msa0854760 | MtrunA17_Chr7g0219141 | 46.591 | 352 | 180 | 5 | 12 | 360 | 11 | 357 | 7.01e-110 | 325 |
| Msa0854760 | MtrunA17_Chr4g0014641 | 47.802 | 364 | 179 | 6 | 3 | 360 | 5 | 363 | 3.15e-108 | 321 |
| Msa0854760 | MtrunA17_Chr1g0188391 | 45.205 | 365 | 191 | 7 | 1 | 360 | 1 | 361 | 2.93e-107 | 318 |
| Msa0854760 | MtrunA17_Chr4g0046341 | 47.191 | 356 | 179 | 5 | 12 | 360 | 11 | 364 | 4.19e-107 | 318 |
| Msa0854760 | MtrunA17_Chr7g0219161 | 46.921 | 341 | 173 | 5 | 11 | 348 | 10 | 345 | 2.03e-105 | 313 |
| Msa0854760 | MtrunA17_Chr7g0223241 | 44.972 | 358 | 187 | 5 | 1 | 358 | 1 | 348 | 5.75e-104 | 310 |
| Msa0854760 | MtrunA17_Chr7g0223231 | 43.575 | 358 | 192 | 5 | 1 | 358 | 1 | 348 | 3.57e-103 | 308 |
| Msa0854760 | MtrunA17_Chr4g0046531 | 43.296 | 358 | 198 | 4 | 3 | 359 | 2 | 355 | 5.75e-94 | 295 |
| Msa0854760 | MtrunA17_Chr4g0046531 | 42.897 | 359 | 200 | 4 | 3 | 360 | 364 | 718 | 1.08e-93 | 294 |
| Msa0854760 | MtrunA17_Chr4g0014661 | 44.904 | 363 | 189 | 6 | 1 | 360 | 3 | 357 | 2.65e-93 | 283 |
| Msa0854760 | MtrunA17_Chr1g0188371 | 42.773 | 339 | 189 | 4 | 5 | 340 | 4 | 340 | 3.90e-91 | 278 |
| Msa0854760 | MtrunA17_Chr4g0014591 | 43.526 | 363 | 194 | 6 | 1 | 360 | 3 | 357 | 6.81e-89 | 271 |
| Msa0854760 | MtrunA17_Chr3g0121301 | 37.092 | 337 | 205 | 4 | 21 | 356 | 27 | 357 | 1.95e-76 | 239 |
| Msa0854760 | MtrunA17_Chr4g0021981 | 38.857 | 350 | 204 | 7 | 15 | 360 | 25 | 368 | 6.23e-75 | 236 |
| Msa0854760 | MtrunA17_Chr4g0022021 | 38.571 | 350 | 205 | 6 | 15 | 360 | 25 | 368 | 2.32e-71 | 227 |
| Msa0854760 | MtrunA17_Chr4g0014601 | 40.377 | 265 | 148 | 5 | 1 | 262 | 3 | 260 | 2.61e-62 | 200 |
| Msa0854760 | MtrunA17_Chr7g0276401 | 32.733 | 333 | 204 | 11 | 32 | 355 | 47 | 368 | 9.43e-47 | 163 |
| Msa0854760 | MtrunA17_Chr7g0276411 | 31.804 | 327 | 202 | 11 | 31 | 345 | 30 | 347 | 9.81e-47 | 162 |
| Msa0854760 | MtrunA17_Chr7g0219171 | 55.224 | 134 | 58 | 2 | 227 | 360 | 117 | 248 | 1.37e-45 | 156 |
| Msa0854760 | MtrunA17_Chr7g0219171 | 39.583 | 144 | 81 | 3 | 12 | 155 | 11 | 148 | 1.20e-22 | 95.5 |
| Msa0854760 | MtrunA17_Chr8g0367441 | 31.118 | 331 | 189 | 7 | 32 | 341 | 46 | 358 | 2.09e-45 | 159 |
| Msa0854760 | MtrunA17_Chr3g0128011 | 29.938 | 324 | 210 | 9 | 32 | 346 | 88 | 403 | 7.16e-43 | 154 |
| Msa0854760 | MtrunA17_Chr8g0367501 | 28.571 | 357 | 196 | 8 | 20 | 345 | 20 | 348 | 2.00e-42 | 152 |
| Msa0854760 | MtrunA17_Chr5g0448091 | 29.664 | 327 | 210 | 9 | 32 | 347 | 33 | 350 | 3.50e-42 | 150 |
| Msa0854760 | MtrunA17_Chr8g0345851 | 34.962 | 266 | 159 | 7 | 99 | 359 | 33 | 289 | 3.55e-42 | 149 |
| Msa0854760 | MtrunA17_Chr8g0367491 | 29.143 | 350 | 187 | 7 | 30 | 345 | 39 | 361 | 4.03e-42 | 150 |
| Msa0854760 | MtrunA17_Chr8g0367451 | 30.818 | 318 | 207 | 7 | 32 | 341 | 45 | 357 | 2.14e-41 | 149 |
| Msa0854760 | MtrunA17_Chr1g0200491 | 28.012 | 332 | 221 | 7 | 27 | 347 | 34 | 358 | 2.48e-39 | 143 |
| Msa0854760 | MtrunA17_Chr1g0163611 | 35.349 | 215 | 132 | 4 | 147 | 359 | 160 | 369 | 1.43e-38 | 141 |
| Msa0854760 | MtrunA17_Chr7g0218271 | 29.392 | 296 | 184 | 8 | 74 | 355 | 89 | 373 | 6.94e-38 | 139 |
| Msa0854760 | MtrunA17_Chr7g0218301 | 29.730 | 296 | 183 | 8 | 74 | 355 | 89 | 373 | 7.94e-38 | 139 |
| Msa0854760 | MtrunA17_Chr1g0163601 | 34.978 | 223 | 138 | 4 | 139 | 359 | 152 | 369 | 1.06e-37 | 139 |
| Msa0854760 | MtrunA17_Chr3g0085201 | 29.132 | 357 | 227 | 11 | 1 | 346 | 1 | 342 | 2.44e-37 | 137 |
| Msa0854760 | MtrunA17_Chr2g0307521 | 30.120 | 249 | 159 | 6 | 115 | 359 | 125 | 362 | 3.80e-37 | 137 |
| Msa0854760 | MtrunA17_Chr7g0218261 | 28.152 | 341 | 226 | 9 | 27 | 355 | 33 | 366 | 6.20e-37 | 137 |
| Msa0854760 | MtrunA17_Chr3g0085211 | 30.625 | 320 | 210 | 8 | 34 | 347 | 43 | 356 | 1.27e-36 | 136 |
| Msa0854760 | MtrunA17_Chr8g0367381 | 38.043 | 184 | 104 | 5 | 147 | 327 | 149 | 325 | 4.46e-36 | 133 |
| Msa0854760 | MtrunA17_Chr7g0218181 | 29.796 | 245 | 166 | 4 | 116 | 359 | 127 | 366 | 8.88e-36 | 133 |
| Msa0854760 | MtrunA17_Chr1g0163621 | 36.715 | 207 | 124 | 4 | 141 | 347 | 170 | 369 | 5.16e-35 | 132 |
| Msa0854760 | MtrunA17_Chr7g0218131 | 31.441 | 229 | 152 | 3 | 119 | 347 | 133 | 356 | 1.29e-34 | 130 |
| Msa0854760 | MtrunA17_Chr7g0218211 | 26.239 | 343 | 236 | 9 | 27 | 359 | 33 | 368 | 5.84e-33 | 126 |
| Msa0854760 | MtrunA17_Chr2g0314271 | 29.907 | 321 | 210 | 8 | 32 | 345 | 27 | 339 | 8.87e-33 | 125 |
| Msa0854760 | MtrunA17_Chr3g0130061 | 27.429 | 350 | 234 | 10 | 8 | 345 | 2 | 343 | 2.04e-29 | 116 |
| Msa0854760 | MtrunA17_Chr3g0130011 | 27.714 | 350 | 233 | 11 | 8 | 345 | 2 | 343 | 1.02e-28 | 114 |
| Msa0854760 | MtrunA17_Chr8g0367401 | 38.182 | 110 | 67 | 1 | 150 | 259 | 2 | 110 | 4.61e-21 | 88.2 |
| Msa0854760 | MtrunA17_Chr6g0482291 | 32.000 | 175 | 103 | 6 | 173 | 345 | 1 | 161 | 7.26e-21 | 88.6 |
| Msa0854760 | MtrunA17_Chr4g0014611 | 56.436 | 101 | 43 | 1 | 260 | 360 | 8 | 107 | 1.59e-20 | 85.5 |
| Msa0854760 | MtrunA17_Chr8g0367461 | 43.299 | 97 | 52 | 1 | 246 | 342 | 1 | 94 | 1.83e-19 | 82.8 |
| Msa0854760 | MtrunA17_Chr4g0014671 | 55.660 | 106 | 46 | 1 | 255 | 360 | 30 | 134 | 8.53e-18 | 79.0 |
| Msa0854760 | MtrunA17_Chr4g0011691 | 41.237 | 97 | 52 | 4 | 261 | 356 | 140 | 232 | 3.97e-13 | 68.2 |
| Msa0854760 | MtrunA17_Chr4g0011691 | 28.788 | 132 | 77 | 4 | 16 | 144 | 22 | 139 | 2.64e-11 | 63.2 |
| Msa0854760 | MtrunA17_Chr8g0367391 | 43.529 | 85 | 41 | 4 | 259 | 341 | 36 | 115 | 9.66e-12 | 62.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0854760 | AT4G35160.1 | 34.232 | 371 | 223 | 9 | 4 | 359 | 16 | 380 | 3.97e-64 | 209 |
| Msa0854760 | AT4G35150.1 | 33.151 | 365 | 192 | 9 | 4 | 359 | 2 | 323 | 1.14e-59 | 196 |
| Msa0854760 | AT1G51990.1 | 32.399 | 321 | 203 | 8 | 46 | 360 | 50 | 362 | 1.46e-46 | 162 |
| Msa0854760 | AT1G51990.2 | 32.399 | 321 | 203 | 8 | 46 | 360 | 50 | 362 | 1.56e-46 | 162 |
| Msa0854760 | AT5G54160.1 | 30.938 | 320 | 210 | 8 | 32 | 346 | 34 | 347 | 1.94e-46 | 162 |
| Msa0854760 | AT1G33030.1 | 32.716 | 324 | 201 | 11 | 32 | 346 | 21 | 336 | 6.00e-41 | 147 |
| Msa0854760 | AT1G77520.1 | 27.733 | 375 | 240 | 10 | 2 | 359 | 20 | 380 | 4.22e-40 | 145 |
| Msa0854760 | AT3G53140.1 | 30.887 | 327 | 204 | 10 | 32 | 345 | 27 | 344 | 3.30e-38 | 140 |
| Msa0854760 | AT5G53810.1 | 30.925 | 346 | 213 | 12 | 32 | 359 | 40 | 377 | 1.55e-35 | 133 |
| Msa0854760 | AT1G77530.1 | 29.600 | 375 | 233 | 10 | 2 | 359 | 20 | 380 | 4.25e-33 | 127 |
| Msa0854760 | AT1G63140.2 | 28.954 | 373 | 238 | 11 | 2 | 359 | 20 | 380 | 8.67e-33 | 126 |
| Msa0854760 | AT1G63140.4 | 28.954 | 373 | 238 | 11 | 2 | 359 | 40 | 400 | 9.49e-33 | 126 |
| Msa0854760 | AT1G21130.1 | 26.888 | 331 | 215 | 8 | 32 | 346 | 40 | 359 | 1.75e-32 | 125 |
| Msa0854760 | AT1G21100.1 | 25.982 | 331 | 218 | 8 | 32 | 346 | 40 | 359 | 2.56e-30 | 119 |
| Msa0854760 | AT5G37170.2 | 32.864 | 213 | 131 | 7 | 151 | 359 | 29 | 233 | 6.37e-30 | 115 |
| Msa0854760 | AT5G37170.1 | 32.864 | 213 | 131 | 7 | 151 | 359 | 129 | 333 | 1.86e-29 | 116 |
| Msa0854760 | AT1G21110.1 | 25.688 | 327 | 216 | 8 | 32 | 342 | 40 | 355 | 2.92e-29 | 116 |
| Msa0854760 | AT1G21120.1 | 25.680 | 331 | 219 | 8 | 32 | 346 | 40 | 359 | 5.74e-29 | 115 |
| Msa0854760 | AT1G21120.2 | 25.680 | 331 | 219 | 8 | 32 | 346 | 88 | 407 | 1.39e-28 | 115 |
| Msa0854760 | AT1G62900.1 | 35.096 | 208 | 130 | 3 | 153 | 359 | 1 | 204 | 2.27e-28 | 110 |
| Msa0854760 | AT1G76790.1 | 26.586 | 331 | 208 | 9 | 32 | 341 | 30 | 346 | 1.71e-26 | 108 |
| Msa0854760 | AT5G37170.3 | 34.409 | 186 | 110 | 6 | 181 | 359 | 5 | 185 | 1.31e-25 | 102 |
| Msa0854760 | AT1G33030.2 | 29.362 | 235 | 156 | 7 | 32 | 259 | 21 | 252 | 5.98e-19 | 85.9 |
| Msa0854760 | AT1G33030.3 | 29.362 | 235 | 156 | 7 | 32 | 259 | 21 | 252 | 1.11e-18 | 85.5 |
| Msa0854760 | AT1G63140.1 | 26.103 | 272 | 178 | 9 | 2 | 259 | 40 | 302 | 5.28e-14 | 72.4 |
| Msa0854760 | AT1G21130.2 | 24.066 | 241 | 164 | 4 | 32 | 259 | 40 | 274 | 1.72e-11 | 64.7 |
Find 70 sgRNAs with CRISPR-Local
Find 212 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAACATTCTCTTCATTATTT+TGG | 0.038167 | 5_4:-47554158 | None:intergenic |
| ATTGAATAAATTGCTAAATT+TGG | 0.100203 | 5_4:-47554637 | None:intergenic |
| CTTAAATGTGTTGTTGATTT+AGG | 0.154523 | 5_4:+47554249 | Msa0854760:CDS |
| TGAAAATGTGATTCCATATA+TGG | 0.229047 | 5_4:-47554206 | None:intergenic |
| CGACACACGGGTTGTTGTTA+TGG | 0.234685 | 5_4:+47554595 | Msa0854760:CDS |
| AGAGACCTTAAGCCTAAAAT+TGG | 0.252210 | 5_4:-47555761 | None:intergenic |
| CCATAATTGTGTATAATATC+AGG | 0.311951 | 5_4:-47554276 | None:intergenic |
| ATGCGAATAATGACTCATTC+TGG | 0.312409 | 5_4:+47554375 | Msa0854760:CDS |
| CCTGATATTATACACAATTA+TGG | 0.314865 | 5_4:+47554276 | Msa0854760:CDS |
| CGTGGCATCAATTCTCTACT+TGG | 0.332951 | 5_4:+47554541 | Msa0854760:CDS |
| GACACACGGGTTGTTGTTAT+GGG | 0.353744 | 5_4:+47554596 | Msa0854760:CDS |
| ATTGTCCTTAAGTAGTAATA+TGG | 0.361085 | 5_4:-47554463 | None:intergenic |
| TCAAAGCTCAAAGCCATATA+TGG | 0.375218 | 5_4:+47554193 | Msa0854760:CDS |
| TGCAGTGGATATTGCATGAT+TGG | 0.384572 | 5_4:+47555492 | Msa0854760:intron |
| GATCTACCACATGTTGTTGA+TGG | 0.385028 | 5_4:+47554822 | Msa0854760:CDS |
| GCTTTGAGCTTTGAGCAAAT+TGG | 0.386923 | 5_4:-47554184 | None:intergenic |
| TGCCACGGATTTGTCAAAAC+TGG | 0.388454 | 5_4:-47554525 | None:intergenic |
| ATGGATTAAGTTGATTTCTT+CGG | 0.409901 | 5_4:+47555712 | Msa0854760:CDS |
| TGCTAAATCATTCCCACAAA+TGG | 0.411413 | 5_4:+47554785 | Msa0854760:CDS |
| ACCAATTTGTTGATTGAAAA+GGG | 0.417931 | 5_4:+47554690 | Msa0854760:CDS |
| GACCAATTTGTTGATTGAAA+AGG | 0.420504 | 5_4:+47554689 | Msa0854760:CDS |
| ATTCAATGGATTGGAGTCAT+TGG | 0.421743 | 5_4:+47554722 | Msa0854760:CDS |
| AAGAGAGAAACGAGAAAGAA+TGG | 0.424421 | 5_4:+47555693 | Msa0854760:CDS |
| TTGGAGTCATTGGTTGATGT+TGG | 0.427653 | 5_4:+47554732 | Msa0854760:CDS |
| TGCATCCATATTACTACTTA+AGG | 0.438484 | 5_4:+47554458 | Msa0854760:CDS |
| ACGAAAGGTGTCACGCTCAT+TGG | 0.460563 | 5_4:-47554486 | None:intergenic |
| AACAGACGCCATCTTGTTGA+AGG | 0.468012 | 5_4:+47554905 | Msa0854760:CDS |
| CTTCTTTGATATGTTGATGA+TGG | 0.474685 | 5_4:+47555655 | Msa0854760:CDS |
| ATTTGTTGATTGAAAAGGGC+AGG | 0.474833 | 5_4:+47554694 | Msa0854760:CDS |
| GTTGATGTTGGAGGAGGCAA+GGG | 0.478669 | 5_4:+47554744 | Msa0854760:CDS |
| AGGCAAGGGGACCATGGCAA+AGG | 0.481437 | 5_4:+47554758 | Msa0854760:CDS |
| AATACACTAAACTCCATTTG+TGG | 0.483372 | 5_4:-47554798 | None:intergenic |
| AACAAGATGGCGTCTGTTGG+AGG | 0.483750 | 5_4:-47554900 | None:intergenic |
| ATACACTAAACTCCATTTGT+GGG | 0.494527 | 5_4:-47554797 | None:intergenic |
| CAATTTATTCAATGAGTCCA+TGG | 0.500941 | 5_4:+47554647 | Msa0854760:CDS |
| ATAGCAAAGAAAGGTAAAGA+AGG | 0.509576 | 5_4:+47555560 | Msa0854760:CDS |
| GGTTGATGTTGGAGGAGGCA+AGG | 0.512756 | 5_4:+47554743 | Msa0854760:CDS |
| TTCAACAAGATGGCGTCTGT+TGG | 0.513155 | 5_4:-47554903 | None:intergenic |
| CAGGGGAGTATTCAATGGAT+TGG | 0.517015 | 5_4:+47554713 | Msa0854760:CDS |
| AAAGAAAGGTAAAGAAGGGA+AGG | 0.534278 | 5_4:+47555565 | Msa0854760:CDS |
| AAGGGCAGGGGAGTATTCAA+TGG | 0.534551 | 5_4:+47554708 | Msa0854760:CDS |
| TCGAGCATCGCGTGCACGAA+AGG | 0.542137 | 5_4:-47554501 | None:intergenic |
| CATGTTGTTGATGGCTTGCA+AGG | 0.546922 | 5_4:+47554831 | Msa0854760:CDS |
| GAGAATCTAAACTATGTTGG+TGG | 0.550202 | 5_4:+47554858 | Msa0854760:CDS |
| ATTAAGTTGATTTCTTCGGC+TGG | 0.551204 | 5_4:+47555716 | Msa0854760:CDS |
| GAGTCATTGGTTGATGTTGG+AGG | 0.554899 | 5_4:+47554735 | Msa0854760:CDS |
| ATGGTGTTGGAAAGTGAGAA+GGG | 0.555376 | 5_4:+47555602 | Msa0854760:CDS |
| AGTGAGAATCTAAACTATGT+TGG | 0.555667 | 5_4:+47554855 | Msa0854760:CDS |
| CATGGTGTTGGAAAGTGAGA+AGG | 0.565194 | 5_4:+47555601 | Msa0854760:CDS |
| TCATTGGTTGATGTTGGAGG+AGG | 0.566964 | 5_4:+47554738 | Msa0854760:CDS |
| TTGATGATGGTAGTACTCAC+AGG | 0.567324 | 5_4:+47555668 | Msa0854760:CDS |
| ACCACATTTGAAACGACACA+CGG | 0.570172 | 5_4:+47554582 | Msa0854760:CDS |
| TTTAGCAAGGGCCTTTGCCA+TGG | 0.572788 | 5_4:-47554769 | None:intergenic |
| AACAACACATTTAAGTGACA+TGG | 0.577803 | 5_4:-47554241 | None:intergenic |
| AAGGATGCAATAGCAAAGAA+AGG | 0.578531 | 5_4:+47555551 | Msa0854760:CDS |
| TGGAGGAGGCAAGGGGACCA+TGG | 0.578795 | 5_4:+47554752 | Msa0854760:CDS |
| TCATTATTCGCATTAAGCGA+TGG | 0.581683 | 5_4:-47554365 | None:intergenic |
| TAGCAAAGAAAGGTAAAGAA+GGG | 0.583690 | 5_4:+47555561 | Msa0854760:CDS |
| CCCGTGTGTCGTTTCAAATG+TGG | 0.584900 | 5_4:-47554583 | None:intergenic |
| TTGTTGATTGAAAAGGGCAG+GGG | 0.586763 | 5_4:+47554696 | Msa0854760:CDS |
| TTTGTGGGAATGATTTAGCA+AGG | 0.587728 | 5_4:-47554782 | None:intergenic |
| TTGTGGGAATGATTTAGCAA+GGG | 0.591958 | 5_4:-47554781 | None:intergenic |
| TTTGTTGATTGAAAAGGGCA+GGG | 0.593541 | 5_4:+47554695 | Msa0854760:CDS |
| GATTGTGATAGACATGGTGT+TGG | 0.599108 | 5_4:+47555589 | Msa0854760:CDS |
| TAATCGAGTATCACTTGCCA+TGG | 0.612877 | 5_4:-47554664 | None:intergenic |
| CAAGTAGAGAATTGATGCCA+CGG | 0.622392 | 5_4:-47554540 | None:intergenic |
| TTGATGTTGGAGGAGGCAAG+GGG | 0.644086 | 5_4:+47554745 | Msa0854760:CDS |
| TGCAAGCCATCAACAACATG+TGG | 0.655269 | 5_4:-47554828 | None:intergenic |
| CCACATTTGAAACGACACAC+GGG | 0.682491 | 5_4:+47554583 | Msa0854760:CDS |
| GAAGGTGATTGTGATAGACA+TGG | 0.741542 | 5_4:+47555583 | Msa0854760:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTGAATAAATTGCTAAATT+TGG | - | chr5_4:47554640-47554659 | None:intergenic | 15.0% |
| !! | TAAATATATATCACTTGAAT+TGG | + | chr5_4:47554949-47554968 | Msa0854760:intron | 15.0% |
| !!! | TTTTTTGAAGAAGTTAAATT+AGG | - | chr5_4:47555062-47555081 | None:intergenic | 15.0% |
| !!! | ACTTAAATCTTTTTTAAATG+TGG | - | chr5_4:47555106-47555125 | None:intergenic | 15.0% |
| !! | ATGAATGTGTAAAAATATTA+AGG | + | chr5_4:47555522-47555541 | Msa0854760:CDS | 15.0% |
| !! | AAAAATATTAAGGAATTGTA+AGG | + | chr5_4:47555532-47555551 | Msa0854760:CDS | 15.0% |
| !! | ATTGAATAAATTGCTAAATT+TGG | - | chr5_4:47554640-47554659 | None:intergenic | 15.0% |
| !! | TAAATATATATCACTTGAAT+TGG | + | chr5_4:47554949-47554968 | Msa0854760:intron | 15.0% |
| !!! | TTTTTTGAAGAAGTTAAATT+AGG | - | chr5_4:47555062-47555081 | None:intergenic | 15.0% |
| !!! | ACTTAAATCTTTTTTAAATG+TGG | - | chr5_4:47555106-47555125 | None:intergenic | 15.0% |
| !! | ATGAATGTGTAAAAATATTA+AGG | + | chr5_4:47555522-47555541 | Msa0854760:CDS | 15.0% |
| !! | AAAAATATTAAGGAATTGTA+AGG | + | chr5_4:47555532-47555551 | Msa0854760:CDS | 15.0% |
| !!! | AACATTCTCTTCATTATTTT+GGG | - | chr5_4:47554160-47554179 | None:intergenic | 20.0% |
| !! | GTTGAGATATACTATAATAA+GGG | + | chr5_4:47555290-47555309 | Msa0854760:intron | 20.0% |
| !! | ATGACACTATAATATAGTTT+AGG | + | chr5_4:47555336-47555355 | Msa0854760:intron | 20.0% |
| !! | TGACACTATAATATAGTTTA+GGG | + | chr5_4:47555337-47555356 | Msa0854760:intron | 20.0% |
| !!! | TATAAGATTACTCCAATTTT+AGG | + | chr5_4:47555749-47555768 | Msa0854760:CDS | 20.0% |
| !!! | AACATTCTCTTCATTATTTT+GGG | - | chr5_4:47554160-47554179 | None:intergenic | 20.0% |
| !! | GTTGAGATATACTATAATAA+GGG | + | chr5_4:47555290-47555309 | Msa0854760:intron | 20.0% |
| !! | ATGACACTATAATATAGTTT+AGG | + | chr5_4:47555336-47555355 | Msa0854760:intron | 20.0% |
| !! | TGACACTATAATATAGTTTA+GGG | + | chr5_4:47555337-47555356 | Msa0854760:intron | 20.0% |
| !!! | TATAAGATTACTCCAATTTT+AGG | + | chr5_4:47555749-47555768 | Msa0854760:CDS | 20.0% |
| !! | CAACATTCTCTTCATTATTT+TGG | - | chr5_4:47554161-47554180 | None:intergenic | 25.0% |
| ! | TGAAAATGTGATTCCATATA+TGG | - | chr5_4:47554209-47554228 | None:intergenic | 25.0% |
| !!! | CTTAAATGTGTTGTTGATTT+AGG | + | chr5_4:47554249-47554268 | Msa0854760:CDS | 25.0% |
| ! | CCATAATTGTGTATAATATC+AGG | - | chr5_4:47554279-47554298 | None:intergenic | 25.0% |
| ! | CCTGATATTATACACAATTA+TGG | + | chr5_4:47554276-47554295 | Msa0854760:CDS | 25.0% |
| !!! | AAAGAAATAAGTTTTGAGAG+TGG | - | chr5_4:47554312-47554331 | None:intergenic | 25.0% |
| ! | ATTGTCCTTAAGTAGTAATA+TGG | - | chr5_4:47554466-47554485 | None:intergenic | 25.0% |
| !!! | ACCAATTTGTTGATTGAAAA+GGG | + | chr5_4:47554690-47554709 | Msa0854760:CDS | 25.0% |
| ! | ATTAGGTCACCTAAATTAAT+AGG | - | chr5_4:47555045-47555064 | None:intergenic | 25.0% |
| ! | GGTTGAGATATACTATAATA+AGG | + | chr5_4:47555289-47555308 | Msa0854760:intron | 25.0% |
| ! | AGTGAAATTAAGACAAAATG+AGG | - | chr5_4:47555414-47555433 | None:intergenic | 25.0% |
| !!! | ATGGATTAAGTTGATTTCTT+CGG | + | chr5_4:47555712-47555731 | Msa0854760:CDS | 25.0% |
| !! | CAACATTCTCTTCATTATTT+TGG | - | chr5_4:47554161-47554180 | None:intergenic | 25.0% |
| ! | TGAAAATGTGATTCCATATA+TGG | - | chr5_4:47554209-47554228 | None:intergenic | 25.0% |
| !!! | CTTAAATGTGTTGTTGATTT+AGG | + | chr5_4:47554249-47554268 | Msa0854760:CDS | 25.0% |
| ! | CCATAATTGTGTATAATATC+AGG | - | chr5_4:47554279-47554298 | None:intergenic | 25.0% |
| ! | CCTGATATTATACACAATTA+TGG | + | chr5_4:47554276-47554295 | Msa0854760:CDS | 25.0% |
| !!! | AAAGAAATAAGTTTTGAGAG+TGG | - | chr5_4:47554312-47554331 | None:intergenic | 25.0% |
| ! | ATTGTCCTTAAGTAGTAATA+TGG | - | chr5_4:47554466-47554485 | None:intergenic | 25.0% |
| !!! | ACCAATTTGTTGATTGAAAA+GGG | + | chr5_4:47554690-47554709 | Msa0854760:CDS | 25.0% |
| ! | ATTAGGTCACCTAAATTAAT+AGG | - | chr5_4:47555045-47555064 | None:intergenic | 25.0% |
| ! | GGTTGAGATATACTATAATA+AGG | + | chr5_4:47555289-47555308 | Msa0854760:intron | 25.0% |
| ! | AGTGAAATTAAGACAAAATG+AGG | - | chr5_4:47555414-47555433 | None:intergenic | 25.0% |
| !!! | ATGGATTAAGTTGATTTCTT+CGG | + | chr5_4:47555712-47555731 | Msa0854760:CDS | 25.0% |
| AACAACACATTTAAGTGACA+TGG | - | chr5_4:47554244-47554263 | None:intergenic | 30.0% | |
| !!! | ATAAGTTTTGAGAGTGGTAT+GGG | - | chr5_4:47554306-47554325 | None:intergenic | 30.0% |
| !!! | AATAAGTTTTGAGAGTGGTA+TGG | - | chr5_4:47554307-47554326 | None:intergenic | 30.0% |
| TGCATCCATATTACTACTTA+AGG | + | chr5_4:47554458-47554477 | Msa0854760:CDS | 30.0% | |
| CAATTTATTCAATGAGTCCA+TGG | + | chr5_4:47554647-47554666 | Msa0854760:CDS | 30.0% | |
| !! | GACCAATTTGTTGATTGAAA+AGG | + | chr5_4:47554689-47554708 | Msa0854760:CDS | 30.0% |
| ATACACTAAACTCCATTTGT+GGG | - | chr5_4:47554800-47554819 | None:intergenic | 30.0% | |
| AATACACTAAACTCCATTTG+TGG | - | chr5_4:47554801-47554820 | None:intergenic | 30.0% | |
| AGTGAGAATCTAAACTATGT+TGG | + | chr5_4:47554855-47554874 | Msa0854760:CDS | 30.0% | |
| ! | ACATTTTACCTTCAACAAGA+TGG | - | chr5_4:47554916-47554935 | None:intergenic | 30.0% |
| AAATCGAATATGAGACTTTG+AGG | - | chr5_4:47555013-47555032 | None:intergenic | 30.0% | |
| TGACGAGTACCTATTAATTT+AGG | + | chr5_4:47555033-47555052 | Msa0854760:intron | 30.0% | |
| CCTCTTTATCAATTTCACAT+TGG | - | chr5_4:47555271-47555290 | None:intergenic | 30.0% | |
| CCAATGTGAAATTGATAAAG+AGG | + | chr5_4:47555268-47555287 | Msa0854760:intron | 30.0% | |
| CAGTTATTGGTATCACAAAA+TGG | - | chr5_4:47555372-47555391 | None:intergenic | 30.0% | |
| ! | CATTTTGTGATACCAATAAC+TGG | + | chr5_4:47555370-47555389 | Msa0854760:intron | 30.0% |
| !! | TGAGGAGAGTATTATATGAT+CGG | - | chr5_4:47555396-47555415 | None:intergenic | 30.0% |
| AAGTCTGAATAAAATTGCAG+TGG | + | chr5_4:47555477-47555496 | Msa0854760:intron | 30.0% | |
| ATAGCAAAGAAAGGTAAAGA+AGG | + | chr5_4:47555560-47555579 | Msa0854760:CDS | 30.0% | |
| TAGCAAAGAAAGGTAAAGAA+GGG | + | chr5_4:47555561-47555580 | Msa0854760:CDS | 30.0% | |
| ! | CTTCTTTGATATGTTGATGA+TGG | + | chr5_4:47555655-47555674 | Msa0854760:CDS | 30.0% |
| ! | TTACTCCAATTTTAGGCTTA+AGG | + | chr5_4:47555756-47555775 | Msa0854760:CDS | 30.0% |
| AACAACACATTTAAGTGACA+TGG | - | chr5_4:47554244-47554263 | None:intergenic | 30.0% | |
| !!! | ATAAGTTTTGAGAGTGGTAT+GGG | - | chr5_4:47554306-47554325 | None:intergenic | 30.0% |
| !!! | AATAAGTTTTGAGAGTGGTA+TGG | - | chr5_4:47554307-47554326 | None:intergenic | 30.0% |
| TGCATCCATATTACTACTTA+AGG | + | chr5_4:47554458-47554477 | Msa0854760:CDS | 30.0% | |
| CAATTTATTCAATGAGTCCA+TGG | + | chr5_4:47554647-47554666 | Msa0854760:CDS | 30.0% | |
| !! | GACCAATTTGTTGATTGAAA+AGG | + | chr5_4:47554689-47554708 | Msa0854760:CDS | 30.0% |
| ATACACTAAACTCCATTTGT+GGG | - | chr5_4:47554800-47554819 | None:intergenic | 30.0% | |
| AATACACTAAACTCCATTTG+TGG | - | chr5_4:47554801-47554820 | None:intergenic | 30.0% | |
| AGTGAGAATCTAAACTATGT+TGG | + | chr5_4:47554855-47554874 | Msa0854760:CDS | 30.0% | |
| ! | ACATTTTACCTTCAACAAGA+TGG | - | chr5_4:47554916-47554935 | None:intergenic | 30.0% |
| AAATCGAATATGAGACTTTG+AGG | - | chr5_4:47555013-47555032 | None:intergenic | 30.0% | |
| TGACGAGTACCTATTAATTT+AGG | + | chr5_4:47555033-47555052 | Msa0854760:intron | 30.0% | |
| CCTCTTTATCAATTTCACAT+TGG | - | chr5_4:47555271-47555290 | None:intergenic | 30.0% | |
| CCAATGTGAAATTGATAAAG+AGG | + | chr5_4:47555268-47555287 | Msa0854760:intron | 30.0% | |
| CAGTTATTGGTATCACAAAA+TGG | - | chr5_4:47555372-47555391 | None:intergenic | 30.0% | |
| ! | CATTTTGTGATACCAATAAC+TGG | + | chr5_4:47555370-47555389 | Msa0854760:intron | 30.0% |
| !! | TGAGGAGAGTATTATATGAT+CGG | - | chr5_4:47555396-47555415 | None:intergenic | 30.0% |
| AAGTCTGAATAAAATTGCAG+TGG | + | chr5_4:47555477-47555496 | Msa0854760:intron | 30.0% | |
| ATAGCAAAGAAAGGTAAAGA+AGG | + | chr5_4:47555560-47555579 | Msa0854760:CDS | 30.0% | |
| TAGCAAAGAAAGGTAAAGAA+GGG | + | chr5_4:47555561-47555580 | Msa0854760:CDS | 30.0% | |
| ! | CTTCTTTGATATGTTGATGA+TGG | + | chr5_4:47555655-47555674 | Msa0854760:CDS | 30.0% |
| ! | TTACTCCAATTTTAGGCTTA+AGG | + | chr5_4:47555756-47555775 | Msa0854760:CDS | 30.0% |
| TCAAAGCTCAAAGCCATATA+TGG | + | chr5_4:47554193-47554212 | Msa0854760:CDS | 35.0% | |
| !! | CATGTTTTTGAAGGGTGAAT+TGG | - | chr5_4:47554339-47554358 | None:intergenic | 35.0% |
| !! | GGATGAAGCATGTTTTTGAA+GGG | - | chr5_4:47554347-47554366 | None:intergenic | 35.0% |
| !! | TGGATGAAGCATGTTTTTGA+AGG | - | chr5_4:47554348-47554367 | None:intergenic | 35.0% |
| TCATTATTCGCATTAAGCGA+TGG | - | chr5_4:47554368-47554387 | None:intergenic | 35.0% | |
| ATGCGAATAATGACTCATTC+TGG | + | chr5_4:47554375-47554394 | Msa0854760:CDS | 35.0% | |
| ! | GCCCTTTTCAATCAACAAAT+TGG | - | chr5_4:47554694-47554713 | None:intergenic | 35.0% |
| ! | ATTTGTTGATTGAAAAGGGC+AGG | + | chr5_4:47554694-47554713 | Msa0854760:CDS | 35.0% |
| ! | TTTGTTGATTGAAAAGGGCA+GGG | + | chr5_4:47554695-47554714 | Msa0854760:CDS | 35.0% |
| !! | ATTCAATGGATTGGAGTCAT+TGG | + | chr5_4:47554722-47554741 | Msa0854760:CDS | 35.0% |
| TTGTGGGAATGATTTAGCAA+GGG | - | chr5_4:47554784-47554803 | None:intergenic | 35.0% | |
| TTTGTGGGAATGATTTAGCA+AGG | - | chr5_4:47554785-47554804 | None:intergenic | 35.0% | |
| TGCTAAATCATTCCCACAAA+TGG | + | chr5_4:47554785-47554804 | Msa0854760:CDS | 35.0% | |
| GAGAATCTAAACTATGTTGG+TGG | + | chr5_4:47554858-47554877 | Msa0854760:CDS | 35.0% | |
| TATCACTTGAATTGGCATGA+TGG | + | chr5_4:47554957-47554976 | Msa0854760:intron | 35.0% | |
| TTATATGATCGGCCAGTTAT+TGG | - | chr5_4:47555385-47555404 | None:intergenic | 35.0% | |
| AAGGATGCAATAGCAAAGAA+AGG | + | chr5_4:47555551-47555570 | Msa0854760:CDS | 35.0% | |
| AAAGAAAGGTAAAGAAGGGA+AGG | + | chr5_4:47555565-47555584 | Msa0854760:CDS | 35.0% | |
| AAGAGAGAAACGAGAAAGAA+TGG | + | chr5_4:47555693-47555712 | Msa0854760:CDS | 35.0% | |
| !! | ATTAAGTTGATTTCTTCGGC+TGG | + | chr5_4:47555716-47555735 | Msa0854760:CDS | 35.0% |
| AGAGACCTTAAGCCTAAAAT+TGG | - | chr5_4:47555764-47555783 | None:intergenic | 35.0% | |
| TCAAAGCTCAAAGCCATATA+TGG | + | chr5_4:47554193-47554212 | Msa0854760:CDS | 35.0% | |
| !! | CATGTTTTTGAAGGGTGAAT+TGG | - | chr5_4:47554339-47554358 | None:intergenic | 35.0% |
| !! | GGATGAAGCATGTTTTTGAA+GGG | - | chr5_4:47554347-47554366 | None:intergenic | 35.0% |
| !! | TGGATGAAGCATGTTTTTGA+AGG | - | chr5_4:47554348-47554367 | None:intergenic | 35.0% |
| TCATTATTCGCATTAAGCGA+TGG | - | chr5_4:47554368-47554387 | None:intergenic | 35.0% | |
| ATGCGAATAATGACTCATTC+TGG | + | chr5_4:47554375-47554394 | Msa0854760:CDS | 35.0% | |
| ! | GCCCTTTTCAATCAACAAAT+TGG | - | chr5_4:47554694-47554713 | None:intergenic | 35.0% |
| ! | ATTTGTTGATTGAAAAGGGC+AGG | + | chr5_4:47554694-47554713 | Msa0854760:CDS | 35.0% |
| ! | TTTGTTGATTGAAAAGGGCA+GGG | + | chr5_4:47554695-47554714 | Msa0854760:CDS | 35.0% |
| !! | ATTCAATGGATTGGAGTCAT+TGG | + | chr5_4:47554722-47554741 | Msa0854760:CDS | 35.0% |
| TTGTGGGAATGATTTAGCAA+GGG | - | chr5_4:47554784-47554803 | None:intergenic | 35.0% | |
| TTTGTGGGAATGATTTAGCA+AGG | - | chr5_4:47554785-47554804 | None:intergenic | 35.0% | |
| TGCTAAATCATTCCCACAAA+TGG | + | chr5_4:47554785-47554804 | Msa0854760:CDS | 35.0% | |
| GAGAATCTAAACTATGTTGG+TGG | + | chr5_4:47554858-47554877 | Msa0854760:CDS | 35.0% | |
| TATCACTTGAATTGGCATGA+TGG | + | chr5_4:47554957-47554976 | Msa0854760:intron | 35.0% | |
| TTATATGATCGGCCAGTTAT+TGG | - | chr5_4:47555385-47555404 | None:intergenic | 35.0% | |
| AAGGATGCAATAGCAAAGAA+AGG | + | chr5_4:47555551-47555570 | Msa0854760:CDS | 35.0% | |
| AAAGAAAGGTAAAGAAGGGA+AGG | + | chr5_4:47555565-47555584 | Msa0854760:CDS | 35.0% | |
| AAGAGAGAAACGAGAAAGAA+TGG | + | chr5_4:47555693-47555712 | Msa0854760:CDS | 35.0% | |
| !! | ATTAAGTTGATTTCTTCGGC+TGG | + | chr5_4:47555716-47555735 | Msa0854760:CDS | 35.0% |
| AGAGACCTTAAGCCTAAAAT+TGG | - | chr5_4:47555764-47555783 | None:intergenic | 35.0% | |
| !! | GCTTTGAGCTTTGAGCAAAT+TGG | - | chr5_4:47554187-47554206 | None:intergenic | 40.0% |
| !! | ATCCAGTTTTGACAAATCCG+TGG | + | chr5_4:47554523-47554542 | Msa0854760:CDS | 40.0% |
| CAAGTAGAGAATTGATGCCA+CGG | - | chr5_4:47554543-47554562 | None:intergenic | 40.0% | |
| ! | ACCACATTTGAAACGACACA+CGG | + | chr5_4:47554582-47554601 | Msa0854760:CDS | 40.0% |
| TAATCGAGTATCACTTGCCA+TGG | - | chr5_4:47554667-47554686 | None:intergenic | 40.0% | |
| ! | TTGTTGATTGAAAAGGGCAG+GGG | + | chr5_4:47554696-47554715 | Msa0854760:CDS | 40.0% |
| ! | TTGGAGTCATTGGTTGATGT+TGG | + | chr5_4:47554732-47554751 | Msa0854760:CDS | 40.0% |
| GATCTACCACATGTTGTTGA+TGG | + | chr5_4:47554822-47554841 | Msa0854760:CDS | 40.0% | |
| TTGAGGAATAGCACAATCCA+AGG | - | chr5_4:47554996-47555015 | None:intergenic | 40.0% | |
| TAAGGGACACATAGAGTTAG+TGG | + | chr5_4:47555307-47555326 | Msa0854760:intron | 40.0% | |
| TGCAGTGGATATTGCATGAT+TGG | + | chr5_4:47555492-47555511 | Msa0854760:intron | 40.0% | |
| GAAGGTGATTGTGATAGACA+TGG | + | chr5_4:47555583-47555602 | Msa0854760:CDS | 40.0% | |
| GATTGTGATAGACATGGTGT+TGG | + | chr5_4:47555589-47555608 | Msa0854760:CDS | 40.0% | |
| ! | ATGGTGTTGGAAAGTGAGAA+GGG | + | chr5_4:47555602-47555621 | Msa0854760:CDS | 40.0% |
| !! | TTGATGATGGTAGTACTCAC+AGG | + | chr5_4:47555668-47555687 | Msa0854760:CDS | 40.0% |
| !! | GCTTTGAGCTTTGAGCAAAT+TGG | - | chr5_4:47554187-47554206 | None:intergenic | 40.0% |
| !! | ATCCAGTTTTGACAAATCCG+TGG | + | chr5_4:47554523-47554542 | Msa0854760:CDS | 40.0% |
| CAAGTAGAGAATTGATGCCA+CGG | - | chr5_4:47554543-47554562 | None:intergenic | 40.0% | |
| ! | ACCACATTTGAAACGACACA+CGG | + | chr5_4:47554582-47554601 | Msa0854760:CDS | 40.0% |
| TAATCGAGTATCACTTGCCA+TGG | - | chr5_4:47554667-47554686 | None:intergenic | 40.0% | |
| ! | TTGTTGATTGAAAAGGGCAG+GGG | + | chr5_4:47554696-47554715 | Msa0854760:CDS | 40.0% |
| ! | TTGGAGTCATTGGTTGATGT+TGG | + | chr5_4:47554732-47554751 | Msa0854760:CDS | 40.0% |
| GATCTACCACATGTTGTTGA+TGG | + | chr5_4:47554822-47554841 | Msa0854760:CDS | 40.0% | |
| TTGAGGAATAGCACAATCCA+AGG | - | chr5_4:47554996-47555015 | None:intergenic | 40.0% | |
| TAAGGGACACATAGAGTTAG+TGG | + | chr5_4:47555307-47555326 | Msa0854760:intron | 40.0% | |
| TGCAGTGGATATTGCATGAT+TGG | + | chr5_4:47555492-47555511 | Msa0854760:intron | 40.0% | |
| GAAGGTGATTGTGATAGACA+TGG | + | chr5_4:47555583-47555602 | Msa0854760:CDS | 40.0% | |
| GATTGTGATAGACATGGTGT+TGG | + | chr5_4:47555589-47555608 | Msa0854760:CDS | 40.0% | |
| ! | ATGGTGTTGGAAAGTGAGAA+GGG | + | chr5_4:47555602-47555621 | Msa0854760:CDS | 40.0% |
| !! | TTGATGATGGTAGTACTCAC+AGG | + | chr5_4:47555668-47555687 | Msa0854760:CDS | 40.0% |
| TGCCACGGATTTGTCAAAAC+TGG | - | chr5_4:47554528-47554547 | None:intergenic | 45.0% | |
| CGTGGCATCAATTCTCTACT+TGG | + | chr5_4:47554541-47554560 | Msa0854760:CDS | 45.0% | |
| ! | CCACATTTGAAACGACACAC+GGG | + | chr5_4:47554583-47554602 | Msa0854760:CDS | 45.0% |
| ! | GACACACGGGTTGTTGTTAT+GGG | + | chr5_4:47554596-47554615 | Msa0854760:CDS | 45.0% |
| !! | CAGGGGAGTATTCAATGGAT+TGG | + | chr5_4:47554713-47554732 | Msa0854760:CDS | 45.0% |
| ! | GAGTCATTGGTTGATGTTGG+AGG | + | chr5_4:47554735-47554754 | Msa0854760:CDS | 45.0% |
| ! | TCATTGGTTGATGTTGGAGG+AGG | + | chr5_4:47554738-47554757 | Msa0854760:CDS | 45.0% |
| TGCAAGCCATCAACAACATG+TGG | - | chr5_4:47554831-47554850 | None:intergenic | 45.0% | |
| !! | CATGTTGTTGATGGCTTGCA+AGG | + | chr5_4:47554831-47554850 | Msa0854760:CDS | 45.0% |
| TTCAACAAGATGGCGTCTGT+TGG | - | chr5_4:47554906-47554925 | None:intergenic | 45.0% | |
| AACAGACGCCATCTTGTTGA+AGG | + | chr5_4:47554905-47554924 | Msa0854760:CDS | 45.0% | |
| !! | ATGGTGTTGACTTGAGACCT+TGG | + | chr5_4:47554976-47554995 | Msa0854760:intron | 45.0% |
| ! | CATGGTGTTGGAAAGTGAGA+AGG | + | chr5_4:47555601-47555620 | Msa0854760:CDS | 45.0% |
| TGCCACGGATTTGTCAAAAC+TGG | - | chr5_4:47554528-47554547 | None:intergenic | 45.0% | |
| CGTGGCATCAATTCTCTACT+TGG | + | chr5_4:47554541-47554560 | Msa0854760:CDS | 45.0% | |
| ! | CCACATTTGAAACGACACAC+GGG | + | chr5_4:47554583-47554602 | Msa0854760:CDS | 45.0% |
| ! | GACACACGGGTTGTTGTTAT+GGG | + | chr5_4:47554596-47554615 | Msa0854760:CDS | 45.0% |
| !! | CAGGGGAGTATTCAATGGAT+TGG | + | chr5_4:47554713-47554732 | Msa0854760:CDS | 45.0% |
| ! | GAGTCATTGGTTGATGTTGG+AGG | + | chr5_4:47554735-47554754 | Msa0854760:CDS | 45.0% |
| ! | TCATTGGTTGATGTTGGAGG+AGG | + | chr5_4:47554738-47554757 | Msa0854760:CDS | 45.0% |
| TGCAAGCCATCAACAACATG+TGG | - | chr5_4:47554831-47554850 | None:intergenic | 45.0% | |
| !! | CATGTTGTTGATGGCTTGCA+AGG | + | chr5_4:47554831-47554850 | Msa0854760:CDS | 45.0% |
| TTCAACAAGATGGCGTCTGT+TGG | - | chr5_4:47554906-47554925 | None:intergenic | 45.0% | |
| AACAGACGCCATCTTGTTGA+AGG | + | chr5_4:47554905-47554924 | Msa0854760:CDS | 45.0% | |
| !! | ATGGTGTTGACTTGAGACCT+TGG | + | chr5_4:47554976-47554995 | Msa0854760:intron | 45.0% |
| ! | CATGGTGTTGGAAAGTGAGA+AGG | + | chr5_4:47555601-47555620 | Msa0854760:CDS | 45.0% |
| !! | ACGAAAGGTGTCACGCTCAT+TGG | - | chr5_4:47554489-47554508 | None:intergenic | 50.0% |
| !! | CCCGTGTGTCGTTTCAAATG+TGG | - | chr5_4:47554586-47554605 | None:intergenic | 50.0% |
| ! | CGACACACGGGTTGTTGTTA+TGG | + | chr5_4:47554595-47554614 | Msa0854760:CDS | 50.0% |
| !! | AAGGGCAGGGGAGTATTCAA+TGG | + | chr5_4:47554708-47554727 | Msa0854760:CDS | 50.0% |
| GTTGATGTTGGAGGAGGCAA+GGG | + | chr5_4:47554744-47554763 | Msa0854760:CDS | 50.0% | |
| TTGATGTTGGAGGAGGCAAG+GGG | + | chr5_4:47554745-47554764 | Msa0854760:CDS | 50.0% | |
| TTTAGCAAGGGCCTTTGCCA+TGG | - | chr5_4:47554772-47554791 | None:intergenic | 50.0% | |
| AACAAGATGGCGTCTGTTGG+AGG | - | chr5_4:47554903-47554922 | None:intergenic | 50.0% | |
| !! | ACGAAAGGTGTCACGCTCAT+TGG | - | chr5_4:47554489-47554508 | None:intergenic | 50.0% |
| !! | CCCGTGTGTCGTTTCAAATG+TGG | - | chr5_4:47554586-47554605 | None:intergenic | 50.0% |
| ! | CGACACACGGGTTGTTGTTA+TGG | + | chr5_4:47554595-47554614 | Msa0854760:CDS | 50.0% |
| !! | AAGGGCAGGGGAGTATTCAA+TGG | + | chr5_4:47554708-47554727 | Msa0854760:CDS | 50.0% |
| GTTGATGTTGGAGGAGGCAA+GGG | + | chr5_4:47554744-47554763 | Msa0854760:CDS | 50.0% | |
| TTGATGTTGGAGGAGGCAAG+GGG | + | chr5_4:47554745-47554764 | Msa0854760:CDS | 50.0% | |
| TTTAGCAAGGGCCTTTGCCA+TGG | - | chr5_4:47554772-47554791 | None:intergenic | 50.0% | |
| AACAAGATGGCGTCTGTTGG+AGG | - | chr5_4:47554903-47554922 | None:intergenic | 50.0% | |
| ! | GGTTGATGTTGGAGGAGGCA+AGG | + | chr5_4:47554743-47554762 | Msa0854760:CDS | 55.0% |
| ! | GGTTGATGTTGGAGGAGGCA+AGG | + | chr5_4:47554743-47554762 | Msa0854760:CDS | 55.0% |
| ! | TCGAGCATCGCGTGCACGAA+AGG | - | chr5_4:47554504-47554523 | None:intergenic | 60.0% |
| AGGCAAGGGGACCATGGCAA+AGG | + | chr5_4:47554758-47554777 | Msa0854760:CDS | 60.0% | |
| ! | TCGAGCATCGCGTGCACGAA+AGG | - | chr5_4:47554504-47554523 | None:intergenic | 60.0% |
| AGGCAAGGGGACCATGGCAA+AGG | + | chr5_4:47554758-47554777 | Msa0854760:CDS | 60.0% | |
| TGGAGGAGGCAAGGGGACCA+TGG | + | chr5_4:47554752-47554771 | Msa0854760:CDS | 65.0% | |
| TGGAGGAGGCAAGGGGACCA+TGG | + | chr5_4:47554752-47554771 | Msa0854760:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_4 | gene | 47554150 | 47555802 | 47554150 | ID=Msa0854760;Name=Msa0854760 |
| chr5_4 | mRNA | 47554150 | 47555802 | 47554150 | ID=Msa0854760-mRNA-1;Parent=Msa0854760;Name=Msa0854760-mRNA-1;_AED=0.01;_eAED=0.01;_QI=0|0|0|1|1|1|2|0|360 |
| chr5_4 | exon | 47554150 | 47554926 | 47554150 | ID=Msa0854760-mRNA-1:exon:14971;Parent=Msa0854760-mRNA-1 |
| chr5_4 | exon | 47555497 | 47555802 | 47555497 | ID=Msa0854760-mRNA-1:exon:14972;Parent=Msa0854760-mRNA-1 |
| chr5_4 | CDS | 47554150 | 47554926 | 47554150 | ID=Msa0854760-mRNA-1:cds;Parent=Msa0854760-mRNA-1 |
| chr5_4 | CDS | 47555497 | 47555802 | 47555497 | ID=Msa0854760-mRNA-1:cds;Parent=Msa0854760-mRNA-1 |
| Gene Sequence |
| Protein sequence |
