AlfalfaGEDB | Msa0819310

M. sativa cultivar zhongmu-4 / Msa0819310

KEGG: K13262|K16040
GO: GO:0003674 GO:0003824 GO:0006725 GO:0008150 GO:0008152 GO:0008168 GO:0008171 GO:0008757 GO:0009058 GO:0009812 GO:0009987 GO:0016740 GO:0016741 GO:0019438 GO:0030761 GO:0032259 GO:0044237 GO:0044249 GO:0071704
PFAM: PF08100.14

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0819310	XP_003615966.1	94.722	360	19	0	1	360	1	360	0.0	703

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0819310	sp\|B0ZB57\|OMT3_HUMLU	61.111	360	134	3	6	360	19	377	2.47e-161	459

Showing 1 to 1 of 1 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0819310	G7KFJ3	94.722	360	19	0	1	360	1	360	0.0	703

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0013270	Msa0819310	0.822625	2.142762e-53	-8.615850e-47
Msa0045810	Msa0819310	0.825838	3.767990e-54	-8.615850e-47
Msa0046200	Msa0819310	0.816383	5.689989e-52	-8.615850e-47
Msa0062190	Msa0819310	0.815753	7.866800e-52	-8.615850e-47
Msa0072180	Msa0819310	0.815063	1.119833e-51	-8.615850e-47
Msa0073110	Msa0819310	0.808308	3.300992e-50	-8.615850e-47
Msa0106540	Msa0819310	0.802676	5.009993e-49	-8.615850e-47
Msa0139500	Msa0819310	0.813706	2.234522e-51	-8.615850e-47
Msa0203880	Msa0819310	0.802265	6.090478e-49	-8.615850e-47
Msa0206370	Msa0819310	0.835890	1.289497e-56	-8.615850e-47

Showing 1 to 10 of 91 entries

Previous1 2 3 4 5…10Next

PPI

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0819310	MtrunA17_Chr5g0432241	94.722	360	19	0	1	360	1	360	0.0	703
Msa0819310	MtrunA17_Chr5g0432301	84.401	359	56	0	1	359	1	359	0.0	637
Msa0819310	MtrunA17_Chr5g0432251	81.944	360	64	1	1	360	1	359	0.0	610
Msa0819310	MtrunA17_Chr5g0432211	76.667	360	69	2	1	360	1	345	0.0	563
Msa0819310	MtrunA17_Chr5g0432261	73.889	360	61	3	1	360	1	327	0.0	532
Msa0819310	MtrunA17_Chr4g0040621	63.158	361	126	5	1	360	15	369	4.84e-164	463
Msa0819310	MtrunA17_Chr4g0014681	49.180	366	177	6	1	360	1	363	1.07e-112	332
Msa0819310	MtrunA17_Chr4g0046361	46.176	353	184	5	12	360	11	361	3.54e-112	331
Msa0819310	MtrunA17_Chr4g0014561	48.634	366	179	6	1	360	1	363	8.78e-111	327
Msa0819310	MtrunA17_Chr7g0219141	46.591	352	180	5	12	360	11	357	1.67e-109	324

Showing 1 to 10 of 60 entries

Previous1 2 3 4 5 6Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0819310	AT4G35160.1	34.771	371	221	9	4	359	16	380	3.35e-64	209
Msa0819310	AT4G35150.1	33.699	365	190	9	4	359	2	323	2.39e-60	197
Msa0819310	AT5G54160.1	31.562	320	208	8	32	346	34	347	2.04e-47	164
Msa0819310	AT1G51990.2	33.553	304	190	7	63	360	65	362	1.31e-46	162
Msa0819310	AT1G51990.1	33.553	304	190	7	63	360	65	362	1.52e-46	162
Msa0819310	AT1G33030.1	33.333	324	199	11	32	346	21	336	1.10e-41	149
Msa0819310	AT1G77520.1	28.533	375	237	10	2	359	20	380	9.34e-41	147
Msa0819310	AT3G53140.1	30.887	327	204	10	32	345	27	344	2.71e-38	140
Msa0819310	AT5G53810.1	32.184	348	210	13	30	359	38	377	2.23e-37	138
Msa0819310	AT1G77530.1	30.831	373	231	11	2	359	20	380	2.00e-34	130

Showing 1 to 10 of 26 entries

Previous1 2 3Next

Find 69 sgRNAs with CRISPR-Local

Find 208 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGAAAGGTAAAGAAGGGA+AGG	0.534278	5_3:-55645875	Msa0819310:CDS
AACAAAATGGCGTCTGTTGG+AGG	0.433773	5_3:+55646533	None:intergenic
AACAACACATTTAAGTGACA+TGG	0.577803	5_3:+55647192	None:intergenic
AAGAGAGAAACGAGAAAGAA+TGG	0.424421	5_3:-55645747	Msa0819310:CDS
AAGGATGCAATAGCAAAGAA+AGG	0.578531	5_3:-55645889	Msa0819310:CDS
AAGGGCAGGGGAGTATTCAA+TGG	0.534551	5_3:-55646725	Msa0819310:CDS
AATACACTAAACTCCATTTG+TGG	0.483372	5_3:+55646635	None:intergenic
ACCAATTTGTTGATTGAAAA+GGG	0.417931	5_3:-55646743	Msa0819310:CDS
ACCACATTTGAAACGACACA+TGG	0.581603	5_3:-55646851	Msa0819310:CDS
ACGAAAGGTGTCACGCTCAT+TGG	0.460563	5_3:+55646947	None:intergenic

Showing 1 to 10 of 69 entries

Previous1 2 3 4 5 6 7Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
TGAAAATGTGATTCCATATG+TGG	+	chr5_3:55645719-55645738	None:intergenic	30.0%
AACAACACATTTAAGTGACA+TGG	+	chr5_3:55645754-55645773	None:intergenic	30.0%
CCATAATTGTGTATGATATC+AGG	+	chr5_3:55645789-55645808	None:intergenic	30.0%
CCTGATATCATACACAATTA+TGG	-	chr5_3:55645786-55645805	Msa0819310:CDS	30.0%
TGCATCCATATTACTACTTA+AGG	-	chr5_3:55645968-55645987	Msa0819310:intron	30.0%
CAATTTATTCAATGAGTCCA+TGG	-	chr5_3:55646157-55646176	Msa0819310:intron	30.0%
ATACACTAAACTCCATTTGT+GGG	+	chr5_3:55646310-55646329	None:intergenic	30.0%
AATACACTAAACTCCATTTG+TGG	+	chr5_3:55646311-55646330	None:intergenic	30.0%
AGTGAGAATCTAAACTATGT+TGG	-	chr5_3:55646365-55646384	Msa0819310:intron	30.0%
ATTAGGTCACCCAAATTAAT+TGG	+	chr5_3:55646560-55646579	None:intergenic	30.0%

Showing 1 to 10 of 208 entries

Previous1 2 3 4 5…21Next

Chromosome	Type	Strat	End	Strand	Name
chr5_3	gene	55645660	55647305	55645660	ID=Msa0819310;Name=Msa0819310
chr5_3	mRNA	55645660	55647305	55645660	ID=Msa0819310-mRNA-1;Parent=Msa0819310;Name=Msa0819310-mRNA-1;_AED=0.01;_eAED=0.01;_QI=0\|0\|0\|1\|1\|1\|2\|0\|360
chr5_3	exon	55646529	55647305	55646529	ID=Msa0819310-mRNA-1:exon:16853;Parent=Msa0819310-mRNA-1
chr5_3	exon	55645660	55645965	55645660	ID=Msa0819310-mRNA-1:exon:16852;Parent=Msa0819310-mRNA-1
chr5_3	CDS	55646529	55647305	55646529	ID=Msa0819310-mRNA-1:cds;Parent=Msa0819310-mRNA-1
chr5_3	CDS	55645660	55645965	55645660	ID=Msa0819310-mRNA-1:cds;Parent=Msa0819310-mRNA-1

Gene Sequence

>Msa0819310

ATGGAATCCCAAAATAATGAAGAGAATGTTGCTTCCAATTTACTCAAAGCTCAAAGCCACATATGGAATCACATTTTCAACTTCATAAATTCCATGTCACTTAAATGTGTTGTTGATTTAGGCATACCTGATATCATACACAATTATGGAAAATCCATATCACTCTCAAAACTTATTTCTTTGCTACCAATTCACCCTTCAAAAACATGCTTCATCCATCGCTTGATGCGAATAATGACTCATTCTGGTTTCTTCTCTCAACATAATGTCACGGAGAATGAGCTAGAAATTGAGTATATTTTAACTGATGCATCCATATTACTACTTAAGGACAATCCAATGAGCGTGACACCTTTCGTGCACGCGATGCTCGATCCAGTTTTGACAAATCCGTGGCATCAATTCTCTACTTGGTTAAAAAATGACGATCATACCACATTTGAAACGACACATGGGATGTTGTTATGGGAATATGCTGCGTGTGACTCCAAATTTAGCAATTTATTCAATGAGTCCATGGCAAGTGATACTCGATTAGTGACCAATTTGTTGATTGAAAAGGGCAGGGGAGTATTCAATGGATTGGAGTCATTGGTTGATGTTGGAGGAGGCACGGGGACCATGGCAAAGGCCCTTGCTAAATCATTCCCACAAATGGAGTTTAGTGTATTTGATCTACCACATGTTGTTGATGGCTTGCAAGGTAGTGAGAATCTAAACTATGTTGGTGGAGACATGTTCAAAGAAATTCCTCCAACAGACGCCATTTTGTTGAAGTGGATATTGCATGATTGGAATGACGATGAATGTGTAAAAATATTAAGGAATTGTAAGGATGCAATAGCAAAGAAAGGTAAAGAAGGGAAGGTGATTGTGATAGACATGGTGTTGGAAAGTGAGAAGGGAAACATTAAAGAATCAGTTGAAACACAACTCTTCTTTGATATGTTGATGATGGTAGTACTCACAGGAAAAGAGAGAAACGAGAAAGAATGGATTAAGTTGATTTCTTCAGCTGGTTTTAGTGACTACAAGATTACTCCAATTTTAGGCTTAAGGTCTCTAATTGAGATATATCCATAA

Protein sequence

>Msa0819310

MESQNNEENVASNLLKAQSHIWNHIFNFINSMSLKCVVDLGIPDIIHNYGKSISLSKLISLLPIHPSKTCFIHRLMRIMTHSGFFSQHNVTENELEIEYILTDASILLLKDNPMSVTPFVHAMLDPVLTNPWHQFSTWLKNDDHTTFETTHGMLLWEYAACDSKFSNLFNESMASDTRLVTNLLIEKGRGVFNGLESLVDVGGGTGTMAKALAKSFPQMEFSVFDLPHVVDGLQGSENLNYVGGDMFKEIPPTDAILLKWILHDWNDDECVKILRNCKDAIAKKGKEGKVIVIDMVLESEKGNIKESVETQLFFDMLMMVVLTGKERNEKEWIKLISSAGFSDYKITPILGLRSLIEIYP*