AlfalfaGEDB | Msa0854880

M. sativa cultivar zhongmu-4 / Msa0854880

KEGG: K07198|K12761
GO: GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005622 GO:0005623 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0018105 GO:0018107 GO:0018193 GO:0018209 GO:0018210 GO:0019538 GO:0023052 GO:0035556 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071704 GO:0140096 GO:1901564
PFAM: PF00069.28

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0854880	XP_003616004.1	96.514	459	16	0	1	459	1	459	0.0	917

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0854880	sp\|Q9C562\|CIPKA_ARATH	64.744	468	143	5	1	461	1	453	0.0	630

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0854880	G7KFN1	96.514	459	16	0	1	459	1	459	0.0	917

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0854880	Msa0982240	0.807215	5.636661e-50	-8.615850e-47
Msa0854880	Msa1170800	0.800726	1.259142e-48	-8.615850e-47
Msa0854880	Msa1214880	0.807510	4.880813e-50	-8.615850e-47
Msa0854880	Msa1447150	0.805184	1.509164e-49	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0854880	MtrunA17_Chr5g0432471	96.514	459	16	0	1	459	1	459	0.0	917
Msa0854880	MtrunA17_Chr3g0107011	68.791	455	111	2	7	455	9	438	0.0	639
Msa0854880	MtrunA17_Chr7g0244521	62.939	456	149	3	1	455	1	437	0.0	589
Msa0854880	MtrunA17_Chr4g0013131	60.879	478	154	7	1	472	1	451	0.0	584
Msa0854880	MtrunA17_Chr2g0284011	52.778	468	188	4	1	460	1	443	4.75e-177	503
Msa0854880	MtrunA17_Chr2g0284031	52.298	457	195	5	4	451	23	465	4.56e-170	488
Msa0854880	MtrunA17_Chr8g0379091	51.299	462	194	8	7	451	21	468	4.66e-161	465
Msa0854880	MtrunA17_Chr1g0150321	51.310	458	185	5	2	458	3	423	5.18e-156	449
Msa0854880	MtrunA17_Chr5g0441011	48.018	454	205	9	12	462	13	438	1.96e-150	436
Msa0854880	MtrunA17_Chr4g0001331	47.732	463	213	7	2	458	10	449	7.13e-150	435

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0854880	AT5G58380.1	64.744	468	143	5	1	461	1	453	0.0	630
Msa0854880	AT5G07070.1	63.425	473	152	2	1	473	1	452	0.0	590
Msa0854880	AT5G45820.1	56.427	459	164	5	1	457	1	425	0.0	524
Msa0854880	AT5G01810.1	53.478	460	171	4	1	456	1	421	1.79e-172	491
Msa0854880	AT5G01810.2	53.478	460	171	4	1	456	1	421	1.79e-172	491
Msa0854880	AT4G18700.1	52.349	447	199	6	7	451	21	455	1.20e-164	474
Msa0854880	AT4G30960.1	53.201	453	179	5	3	453	15	436	3.37e-164	471
Msa0854880	AT5G45810.1	51.656	453	204	7	3	451	19	460	4.48e-163	470
Msa0854880	AT5G25110.1	52.203	454	191	4	6	458	37	465	5.83e-162	467
Msa0854880	AT5G10930.1	50.870	460	200	5	1	458	1	436	2.10e-160	461

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Find 74 sgRNAs with CRISPR-Local

Find 202 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATCAAATGGAGATACAT+TGG	0.502013	5_4:+47833617	Msa0854880:CDS
AAACTAGAGGGAGTCAATGA+AGG	0.552325	5_4:+47833522	Msa0854880:CDS
AAAGAAGACTATCTCTTCTC+TGG	0.453358	5_4:+47833176	Msa0854880:CDS
AAAGCGGATATTTGGTCTTG+TGG	0.496689	5_4:+47832910	Msa0854880:CDS
AAATATTGAATGATAATATT+AGG	0.341320	5_4:+47833649	Msa0854880:CDS
AATATAAAGAAAAGGGCTGC+TGG	0.526219	5_4:+47833492	Msa0854880:CDS
AATCTGAAGGTATCAGATTT+TGG	0.217907	5_4:+47832775	Msa0854880:CDS
ACAAGACCAAATATCCGCTT+TGG	0.468411	5_4:-47832908	None:intergenic
ACCAAGCTGATGTTATAAAA+AGG	0.209517	5_4:+47832491	Msa0854880:CDS
ACCACAACAGTTAGAGCATC+AGG	0.452415	5_4:+47833722	Msa0854880:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TTGGAAAAGTTTACTATGGA+AGG	+	chr5_4:47832404-47832423	Msa0854880:CDS	30.0%
ACCAAGCTGATGTTATAAAA+AGG	+	chr5_4:47832491-47832510	Msa0854880:CDS	30.0%
CCAAGCTGATGTTATAAAAA+GGG	+	chr5_4:47832492-47832511	Msa0854880:CDS	30.0%
GTTATAGAATATGCTAAAGG+CGG	+	chr5_4:47832598-47832617	Msa0854880:CDS	30.0%
ATCAAATTGGAGTCATTGAA+AGG	-	chr5_4:47832970-47832989	None:intergenic	30.0%
TTTCAATGACTCCAATTTGA+TGG	+	chr5_4:47832969-47832988	Msa0854880:CDS	30.0%
CCTATACATTTCCATCAAAT+TGG	-	chr5_4:47832983-47833002	None:intergenic	30.0%
CCAATTTGATGGAAATGTAT+AGG	+	chr5_4:47832980-47832999	Msa0854880:CDS	30.0%
GACAAATCATTTGGATCAAA+TGG	+	chr5_4:47833275-47833294	Msa0854880:CDS	30.0%
ACTTCAACCAAATGGAAAAA+TGG	-	chr5_4:47833594-47833613	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr5_4	gene	47832337	47833761	47832337	ID=Msa0854880;Name=Msa0854880
chr5_4	mRNA	47832337	47833761	47832337	ID=Msa0854880-mRNA-1;Parent=Msa0854880;Name=Msa0854880-mRNA-1;_AED=0.23;_eAED=0.23;_QI=0\|-1\|0\|1\|-1\|1\|1\|0\|474
chr5_4	exon	47832337	47833761	47832337	ID=Msa0854880-mRNA-1:exon:15087;Parent=Msa0854880-mRNA-1
chr5_4	CDS	47832337	47833761	47832337	ID=Msa0854880-mRNA-1:cds;Parent=Msa0854880-mRNA-1

Gene Sequence

>Msa0854880

ATGGAGAATACATCAAAAGTCTTGATGCAAAGATATGAATTAGGAAGATTACTAGGCCAGGGAACTTTTGGAAAAGTTTACTATGGAAGGAGTACAATAACTAACCAAGGTGTAGCTATTAAAATGATTGACAAAGATAAGGTTATCAAAAATGACCAAGCTGATGTTATAAAAAGGGAAATATCTGTTATGAGACTTGTAAAACATCCAAATATTATACAGCTTTTTGAAGTCATGGCTACAAGGAGTAAAATTTACTTTGTTATAGAATATGCTAAAGGCGGTGAGCTTTTCAAACAAGTATCAAAAGGAAAGCTGAAAGATGATGTTGCGCACAAATATTTCAAGCAGTTAATTAGTGCAGTTGATTTTTGTCACAGTAGAGGTGTATACCATAGAGACATAAAGCCAGAGAACATTTTATTAGATGAGAATGAGAATCTGAAGGTATCAGATTTTGGTTTAAGTGCTTTTACTGAATCCAAAAGGCAAGATGGTTTGTTGCATACAACTTGTGGAACTCCTGCTTATGTTGCTCCTGAAGTGATCAAAAGGAAGGGTTATGATGGTTCCAAAGCGGATATTTGGTCTTGTGGAGTTGTTCTTTTTGTTTTTCTTGCTGGTTATGTACCTTTCAATGACTCCAATTTGATGGAAATGTATAGGAAGATAAGTAAAGCAGAGTTTAAGTGTCCTAATTGGTTTCCGAAAAATGTTAAGAAGCTGCTGTGTAAGATGTTGGATCCAAATCCTGACACTAGGATTTCTATCGATAAGATTAAACATTGTTCTTGGTTTAAGCATGGATCAAACGGTAGACCGAAAAAACGTGAAGAGGAAAAGAAGACTATCTCTTCTCTGGCTACAAACTCTGCAGCCCCGACACGTCAGATTGAGGGCGAGTCGGTGTCTGACACTGACACCAAACTGACCATTGTGACAAATCATTTGGATCAAATGGATGAAACCGAAAAGCAAGAGTCAGTTTTGCCTTTGAGTATTAATGCATTTGATATTATCTCTCTTTCGTCTGGTTTTAACCTATGTGGATTTTTTGAAGATAGTTTTCAGAAAAAGGAAGCGAGGTTTACTTCAAAACAGCCTGCATCAACCATTATTTCAAGGCTGGAAGAGATTGCTAAGAGACTGAAGATGAATATAAAGAAAAGGGCTGCTGGTTTGTTGAAACTAGAGGGAGTCAATGAAGGTAGGAAAGGGATTTTGTCTGTTGATGCTGAGATTTTTGAGGCTTCTCCATTTTTCCATTTGGTTGAAGTGAAAAAATCAAATGGAGATACATTGGAATATCAGAAAATATTGAATGATAATATTAGGCCTGCTCTTCAAGACATTGTTTGGGTTTGGCAAGGTGAAGTACAAGAACAACCACAACAGTTAGAGCATCAGGAACAAGCACAGCCATAA

Protein sequence

>Msa0854880

MENTSKVLMQRYELGRLLGQGTFGKVYYGRSTITNQGVAIKMIDKDKVIKNDQADVIKREISVMRLVKHPNIIQLFEVMATRSKIYFVIEYAKGGELFKQVSKGKLKDDVAHKYFKQLISAVDFCHSRGVYHRDIKPENILLDENENLKVSDFGLSAFTESKRQDGLLHTTCGTPAYVAPEVIKRKGYDGSKADIWSCGVVLFVFLAGYVPFNDSNLMEMYRKISKAEFKCPNWFPKNVKKLLCKMLDPNPDTRISIDKIKHCSWFKHGSNGRPKKREEEKKTISSLATNSAAPTRQIEGESVSDTDTKLTIVTNHLDQMDETEKQESVLPLSINAFDIISLSSGFNLCGFFEDSFQKKEARFTSKQPASTIISRLEEIAKRLKMNIKKRAAGLLKLEGVNEGRKGILSVDAEIFEASPFFHLVEVKKSNGDTLEYQKILNDNIRPALQDIVWVWQGEVQEQPQQLEHQEQAQP*