AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1170800


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1170800 MtrunA17_Chr3g0122391 96.515 660 10 1 1 660 381 1027 0.0 1303
Msa1170800 MtrunA17_Chr8g0377481 76.853 661 129 6 1 660 333 970 0.0 988
Msa1170800 MtrunA17_Chr5g0447641 51.234 689 270 12 1 657 558 1212 0.0 641
Msa1170800 MtrunA17_Chr8g0392301 49.062 693 299 12 1 659 324 996 0.0 610
Msa1170800 MtrunA17_Chr2g0311191 48.148 189 46 2 1 189 98 234 4.99e-43 155
Msa1170800 MtrunA17_Chr1g0150511 34.242 330 168 7 63 357 379 694 2.31e-40 159
Msa1170800 MtrunA17_Chr1g0150511 32.867 143 76 3 534 657 870 1011 2.20e-13 73.9
Msa1170800 MtrunA17_Chr3g0136601 35.082 305 172 8 63 358 373 660 1.34e-36 147
Msa1170800 MtrunA17_Chr3g0136601 30.667 150 83 3 529 658 801 949 2.67e-14 76.6
Msa1170800 MtrunA17_Chr5g0405701 32.087 321 183 7 16 332 465 754 8.55e-36 145
Msa1170800 MtrunA17_Chr5g0405701 34.932 146 64 2 526 645 1044 1184 3.25e-17 86.3
Msa1170800 MtrunA17_Chr8g0371601 32.523 329 191 7 16 342 427 726 4.68e-35 142
Msa1170800 MtrunA17_Chr8g0371601 34.161 161 81 4 505 645 999 1154 3.50e-17 86.3
Msa1170800 MtrunA17_Chr4g0013831 28.495 372 212 7 51 419 335 655 8.46e-33 134
Msa1170800 MtrunA17_Chr4g0013831 33.884 121 72 3 529 649 612 724 5.48e-12 68.9
Msa1170800 MtrunA17_Chr7g0269631 27.157 313 175 6 51 359 335 598 2.55e-25 111
Msa1170800 MtrunA17_Chr1g0194741 27.336 289 173 9 52 327 387 651 1.32e-21 99.8
Msa1170800 MtrunA17_Chr1g0197591 25.574 305 197 8 53 350 371 652 3.32e-20 95.9
Msa1170800 MtrunA17_Chr1g0197591 32.990 194 94 7 485 653 863 1045 3.70e-17 85.9
Msa1170800 MtrunA17_Chr7g0274831 36.220 127 67 4 531 653 638 754 7.90e-16 81.6
Msa1170800 MtrunA17_Chr8g0343551 46.914 81 32 3 573 653 13 82 3.00e-15 71.6
Msa1170800 MtrunA17_Chr1g0194731 33.577 137 68 6 529 654 325 449 5.75e-15 77.8
Msa1170800 MtrunA17_Chr1g0186431 31.298 131 82 3 528 657 631 754 1.84e-14 77.0
Msa1170800 MtrunA17_Chr1g0190021 35.200 125 72 3 531 653 634 751 4.42e-13 72.8
Msa1170800 MtrunA17_Chr1g0168161 29.104 134 84 3 528 658 633 758 4.45e-12 69.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1170800 AT1G27320.1 63.988 672 197 9 1 659 391 1030 0.0 834
Msa1170800 AT5G35750.1 51.760 682 270 11 1 658 528 1174 0.0 652
Msa1170800 AT2G01830.5 50.000 686 289 12 1 658 402 1061 0.0 626
Msa1170800 AT2G01830.2 50.000 686 289 12 1 658 413 1072 0.0 626
Msa1170800 AT2G01830.1 50.000 686 289 12 1 658 390 1049 0.0 625
Msa1170800 AT2G01830.4 50.000 686 289 12 1 658 390 1049 0.0 625
Msa1170800 AT2G01830.6 50.000 686 289 12 1 658 390 1049 0.0 625
Msa1170800 AT2G01830.3 50.000 686 289 12 1 658 390 1049 0.0 625
Msa1170800 AT2G17820.1 31.176 340 199 8 16 351 454 762 1.29e-37 150
Msa1170800 AT2G17820.1 32.215 149 64 2 529 645 1041 1184 7.23e-15 79.3
Msa1170800 AT5G10720.1 34.155 284 143 5 63 346 369 608 5.25e-37 149
Msa1170800 AT5G10720.1 31.944 144 78 3 533 657 779 921 4.48e-15 79.7
Msa1170800 AT1G66340.1 29.491 373 203 8 51 419 334 650 2.37e-33 137
Msa1170800 AT2G47430.1 27.300 337 190 10 48 364 383 684 8.71e-27 117
Msa1170800 AT2G47430.1 38.356 146 68 7 513 642 966 1105 1.23e-15 81.6
Msa1170800 AT2G40940.1 29.268 287 154 3 51 337 334 571 2.40e-26 114
Msa1170800 AT3G04580.2 32.298 161 94 4 502 660 617 764 1.05e-15 81.6
Msa1170800 AT3G04580.2 22.410 473 282 17 51 507 358 761 1.08e-11 68.6
Msa1170800 AT3G04580.1 32.298 161 94 4 502 660 617 764 1.05e-15 81.6
Msa1170800 AT3G04580.1 22.410 473 282 17 51 507 358 761 1.08e-11 68.6
Msa1170800 AT3G23150.1 29.412 153 93 2 510 657 624 766 2.15e-12 70.9

Find 182 sgRNAs with CRISPR-Local

Find 245 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTTTGTTCATCTACCCATTT+TGG 0.201868 8_1:-124001 Msa1170800:CDS
TTGCTGATGGTCGCCGCAGC+TGG 0.223040 8_1:-125483 Msa1170800:CDS
GTTCGATATACGAGCAATTA+TGG 0.223643 8_1:-125993 Msa1170800:CDS
GTTTGAAGCTCATTTGAATT+AGG 0.258603 8_1:+125151 None:intergenic
GTCTGCGGTCATAGCCAAAA+TGG 0.274932 8_1:+123987 None:intergenic
TCTCTCAAGCATCTTCTCTC+TGG 0.280566 8_1:-124644 Msa1170800:CDS
GTCGATTATAAATGAAGTTT+TGG 0.286508 8_1:-126062 Msa1170800:CDS
TTAACGAGAATAAATAGTTT+TGG 0.294927 8_1:+124827 None:intergenic
TCAATTTGATGCATGTTTCA+TGG 0.295254 8_1:-124489 Msa1170800:CDS
CCTGCAACCTCAGAGTTTAA+TGG 0.298082 8_1:-125103 Msa1170800:CDS
CTTGTTATTGCACTCCTTGT+TGG 0.299522 8_1:-126518 Msa1170800:CDS
AATGCATACCCATCCATTTC+AGG 0.300024 8_1:+124455 None:intergenic
TCTCATGGGTAACTCGATTA+AGG 0.309745 8_1:-125729 Msa1170800:intron
CCCAAACCTCTTGTTCAATC+AGG 0.316912 8_1:+124930 None:intergenic
TGATCCTTCCATTGTTTGTT+TGG 0.318977 8_1:+123820 None:intergenic
ATAGTCTCACTAATTCTTCT+AGG 0.322121 8_1:-123516 Msa1170800:three_prime_UTR
CTTAACAGGCTTTACGTGTT+TGG 0.333860 8_1:-125853 Msa1170800:intron
CGCACTTTGTGAATAACATT+AGG 0.352181 8_1:-124886 Msa1170800:CDS
CTGCGGCGACCATCAGCAAC+TGG 0.353028 8_1:+125487 None:intergenic
CCATTAAACTCTGAGGTTGC+AGG 0.355278 8_1:+125103 None:intergenic
TCCCACACTTAGAGCATTCC+TGG 0.359931 8_1:+123947 None:intergenic
CTCTCTCAACTTCTATTGAA+TGG 0.365237 8_1:+125551 None:intergenic
AAAGTTGTTGAAGTTGATAA+AGG 0.366112 8_1:-124863 Msa1170800:CDS
TCCTCGAAACGGAGAACATC+AGG 0.366537 8_1:-124672 Msa1170800:CDS
CCCTGATGTTCTCCGTTTCG+AGG 0.366643 8_1:+124671 None:intergenic
ACTAACCTTTACTAAATAGT+TGG 0.372067 8_1:-123008 None:intergenic
CGGTTCTGACATATTCTTGT+TGG 0.374228 8_1:+126110 None:intergenic
TTTGTGAGCGAACCGAAGAT+TGG 0.374889 8_1:-125214 Msa1170800:CDS
TCCTGATTGAACAAGAGGTT+TGG 0.378231 8_1:-124931 Msa1170800:CDS
GGATATTCAAATGCCTGAAA+TGG 0.382771 8_1:-124468 Msa1170800:CDS
AGGATCAGCGTCTGCTCGTT+AGG 0.392321 8_1:-123804 Msa1170800:three_prime_UTR
ATTATTTGTCGAAACCTTCC+AGG 0.393734 8_1:+125758 None:intergenic
CAGGTTCCTCAACAGCTTAT+AGG 0.395280 8_1:-125785 Msa1170800:CDS
TAAATAAAATGAGATAAAAC+AGG 0.398179 8_1:-123048 Msa1170800:three_prime_UTR
GATGCAGAACATACATTAAG+TGG 0.399490 8_1:-125514 Msa1170800:CDS
GACCAGGCAAAGATTGAATC+TGG 0.399819 8_1:-126040 Msa1170800:CDS
TGAAACATGCATCAAATTGA+TGG 0.409814 8_1:+124492 None:intergenic
TAACCTAAAACACCGTTCAT+TGG 0.415965 8_1:+126261 None:intergenic
CCTGATTGAACAAGAGGTTT+GGG 0.417274 8_1:-124930 Msa1170800:CDS
GTGAAAGTGCTTCCAATCTT+CGG 0.418916 8_1:+125202 None:intergenic
ATTCCATGGTAACTGCAAAC+TGG 0.421669 8_1:-123481 Msa1170800:three_prime_UTR
TTCACATGCACTATGGTCTA+TGG 0.422822 8_1:+123253 None:intergenic
CTCGACACTTCAGCACGAAC+GGG 0.429876 8_1:+125052 None:intergenic
TGCTGATGGTCGCCGCAGCT+GGG 0.438301 8_1:-125482 Msa1170800:CDS
TCTGAGAAATCTCAAGGAAA+AGG 0.441122 8_1:-125950 Msa1170800:CDS
CTAACCTTTACTAAATAGTT+GGG 0.443227 8_1:-123007 None:intergenic
AATCAAACTGATGAGATCAT+TGG 0.444384 8_1:+125402 None:intergenic
CTCTCAAGCATCTTCTCTCT+GGG 0.446499 8_1:-124643 Msa1170800:CDS
AGATGCATCCCCATCGGTTA+CGG 0.446690 8_1:+124964 None:intergenic
AGCAGTTTATGTCTCGGATC+AGG 0.446805 8_1:-125804 Msa1170800:CDS
GGCCTCATGAATGGAGAAAT+CGG 0.447591 8_1:-125238 Msa1170800:CDS
CCCGTCGCCAACCTTGGAAA+TGG 0.448066 8_1:+126557 None:intergenic
AACTCTGAGGTTGCAGGATG+AGG 0.449215 8_1:+125109 None:intergenic
ATTGTATCGGTAGAGGATAC+AGG 0.449292 8_1:-125382 Msa1170800:CDS
TACAAAGAGCAATGGGTGTT+GGG 0.450440 8_1:-124706 Msa1170800:CDS
TCGAGAAAACACGGAGGAAC+TGG 0.453005 8_1:-125292 Msa1170800:CDS
TTGGCGACGGGTACATCAAT+TGG 0.453701 8_1:-126545 Msa1170800:CDS
TAAAGTTGTTCAGCTTCAAA+TGG 0.453871 8_1:+123904 None:intergenic
TGATTGAATGCATAGATAGA+AGG 0.458061 8_1:-123312 Msa1170800:three_prime_UTR
TTCAGTCACGAGGGACCTCT+TGG 0.458368 8_1:-125445 Msa1170800:CDS
TTGGTAATCATCCTCTACTT+TGG 0.458958 8_1:+126463 None:intergenic
TGGGGATGCATCTATCAATA+TGG 0.459409 8_1:-124954 Msa1170800:CDS
TACCAGATTCAATCTTTGCC+TGG 0.460164 8_1:+126038 None:intergenic
ACAAATAATTACAAATCTCA+TGG 0.460319 8_1:-125744 Msa1170800:CDS
GGTTCTGACATATTCTTGTT+GGG 0.465067 8_1:+126111 None:intergenic
TGTTTAGTGGGCCTCATGAA+TGG 0.472002 8_1:-125247 Msa1170800:CDS
GTCAGAACCGCACAAGGCAG+TGG 0.486290 8_1:-126097 Msa1170800:CDS
GACTATCCATCTTGTTGAGG+AGG 0.486988 8_1:-125578 Msa1170800:CDS
CAACAGCTTATAGGTGATCC+TGG 0.488540 8_1:-125776 Msa1170800:CDS
AAGCATTAGCAAGTGTTTAG+TGG 0.490010 8_1:-125260 Msa1170800:CDS
GATGGACCTACCTGCATGAA+TGG 0.490106 8_1:+125319 None:intergenic
GGTTGGAATTGAGTCTTGAA+TGG 0.490813 8_1:-123553 Msa1170800:three_prime_UTR
AGTAGTATTGCATGCAGAAG+AGG 0.493722 8_1:+123420 None:intergenic
ATAGAAGGAAATGAGGTTGT+TGG 0.494692 8_1:-123297 Msa1170800:three_prime_UTR
TGTGACTATCCATCTTGTTG+AGG 0.496121 8_1:-125581 Msa1170800:CDS
GATGGTCGCCGCAGCTGGGA+AGG 0.497475 8_1:-125478 Msa1170800:CDS
TGCTCTAAGTGTGGGATGGA+TGG 0.499675 8_1:-123940 Msa1170800:CDS
GATGTACCCGTCGCCAACCT+TGG 0.499801 8_1:+126551 None:intergenic
ATTGCCCAACTATTTAGTAA+AGG 0.500715 8_1:+123003 None:intergenic
CAGTTTGATTGTATCGGTAG+AGG 0.505448 8_1:-125389 Msa1170800:CDS
CAATGGGTGTTGGGAACAAA+GGG 0.506109 8_1:-124697 Msa1170800:CDS
GAAACCACCATTTCCAAGGT+TGG 0.506338 8_1:-126564 Msa1170800:CDS
AAACACGGAGGAACTGGTAT+TGG 0.510837 8_1:-125286 Msa1170800:CDS
ATTTGAATTAGGACATGCAT+TGG 0.511417 8_1:+125162 None:intergenic
AGCTGATGTTGCTAAATCCC+AGG 0.514509 8_1:-126408 Msa1170800:intron
CTACAAAGAGCAATGGGTGT+TGG 0.514952 8_1:-124707 Msa1170800:CDS
ACCATTTCCAAGGTTGGCGA+CGG 0.515570 8_1:-126558 Msa1170800:CDS
ATAGTTTCAGATTTGAAGCA+AGG 0.519061 8_1:-124995 Msa1170800:CDS
AATGAGGTTGTTGGTGACAA+AGG 0.520648 8_1:-123288 Msa1170800:three_prime_UTR
GCAAACTGGAAGTGAATGAG+AGG 0.520715 8_1:-123467 Msa1170800:three_prime_UTR
ATTCAAATGCCTGAAATGGA+TGG 0.520727 8_1:-124464 Msa1170800:CDS
GGCAAATTCACTATATTCCA+TGG 0.521810 8_1:-123495 Msa1170800:three_prime_UTR
CGTGATGCAGGCTACACACC+AGG 0.521945 8_1:-123965 Msa1170800:CDS
ACAAGGCAGTGGAAAAGCTC+TGG 0.522119 8_1:-126086 Msa1170800:CDS
AACCTCAGAGTTTAATGGTA+TGG 0.522313 8_1:-125098 Msa1170800:CDS
AACAGAAACCACCATTTCCA+AGG 0.522429 8_1:-126568 Msa1170800:CDS
ACTTCAGCACGAACGGGTCT+CGG 0.525496 8_1:+125058 None:intergenic
GTGAATCGCACGGTAGCAGC+TGG 0.527329 8_1:-124590 Msa1170800:CDS
TCTGCGGTCATAGCCAAAAT+GGG 0.530084 8_1:+123988 None:intergenic
CTTCCAGTTTGCAGTTACCA+TGG 0.534279 8_1:+123478 None:intergenic
TATGGTCCTGATTGAACAAG+AGG 0.534402 8_1:-124936 Msa1170800:CDS
GCTTCACTACAAAGAGCAAT+GGG 0.535937 8_1:-124713 Msa1170800:CDS
TCTCATCAGTTTGATTGTAT+CGG 0.538336 8_1:-125395 Msa1170800:CDS
TATGACCGCAGACGTGATGC+AGG 0.539120 8_1:-123977 Msa1170800:CDS
CTCGTAATTCACATGCACTA+TGG 0.539161 8_1:+123246 None:intergenic
GGAAAACCTCCTCAACAAGA+TGG 0.540597 8_1:+125572 None:intergenic
CTGAGGTTGCAGGATGAGGT+TGG 0.542365 8_1:+125113 None:intergenic
AAAGTTAGCAGTTTATGTCT+CGG 0.543839 8_1:-125810 Msa1170800:CDS
AGTGGTTTCCCAGTTGCTGA+TGG 0.544028 8_1:-125496 Msa1170800:CDS
GGATGATTACCAAGAGATGA+TGG 0.546326 8_1:-126453 Msa1170800:CDS
AGGGATGATGAATATGCTCA+TGG 0.547816 8_1:-126152 Msa1170800:CDS
GCAATGGGTGTTGGGAACAA+AGG 0.550130 8_1:-124698 Msa1170800:CDS
AGCATTAGCAAGTGTTTAGT+GGG 0.550350 8_1:-125259 Msa1170800:CDS
GAAACATGCATCAAATTGAT+GGG 0.550648 8_1:+124493 None:intergenic
AGCTTATAGGTGATCCTGGA+AGG 0.551023 8_1:-125772 Msa1170800:CDS
GATGAGATCATTGGAGGAGG+TGG 0.554361 8_1:+125411 None:intergenic
CCATTTCCAAGGTTGGCGAC+GGG 0.554660 8_1:-126557 Msa1170800:CDS
AACAAAGGGAATCCTCGAAA+CGG 0.558711 8_1:-124683 Msa1170800:CDS
GTTTGTCCACCGTAACCGAT+GGG 0.559704 8_1:-124973 Msa1170800:CDS
GGGTGGCCTCAGCATAGTGA+TGG 0.560543 8_1:+124514 None:intergenic
TTCAAATGCCTGAAATGGAT+GGG 0.561638 8_1:-124463 Msa1170800:intron
TGCATAGATAGAAGGAAATG+AGG 0.562385 8_1:-123304 Msa1170800:three_prime_UTR
GGTTTGTCCACCGTAACCGA+TGG 0.562427 8_1:-124974 Msa1170800:CDS
GGCTTCACTACAAAGAGCAA+TGG 0.563329 8_1:-124714 Msa1170800:CDS
AGATATCACATACAAAGGCT+TGG 0.567391 8_1:-125031 Msa1170800:CDS
CAAATAATTACAAATCTCAT+GGG 0.572811 8_1:-125743 Msa1170800:CDS
TAAACCAAACAAACAATGGA+AGG 0.575171 8_1:-123824 Msa1170800:three_prime_UTR
TCTCGACACTTCAGCACGAA+CGG 0.575293 8_1:+125051 None:intergenic
GCAAGCATACTTGCTCTCAA+AGG 0.577203 8_1:+124737 None:intergenic
GATATTCACTCCATTCATGC+AGG 0.578156 8_1:-125329 Msa1170800:CDS
ATCTCAAGGAAAAGGAGTAG+AGG 0.580019 8_1:-125942 Msa1170800:intron
AAGAGGTCCCTCGTGACTGA+AGG 0.581373 8_1:+125447 None:intergenic
AGCTGAACAACTTTATAGAG+AGG 0.581697 8_1:-123896 Msa1170800:CDS
GGATCACCTATAAGCTGTTG+AGG 0.588527 8_1:+125779 None:intergenic
CACCAGGAATGCTCTAAGTG+TGG 0.589718 8_1:-123949 Msa1170800:CDS
CAAACTGATGAGATCATTGG+AGG 0.589840 8_1:+125405 None:intergenic
CATGCATCAAATTGATGGGG+TGG 0.590211 8_1:+124497 None:intergenic
CCATCCATCTCGAGAAAACA+CGG 0.590517 8_1:-125301 Msa1170800:CDS
CAACAAGGAGTGCAATAACA+AGG 0.591437 8_1:+126519 None:intergenic
TGCGGCGACCATCAGCAACT+GGG 0.592339 8_1:+125488 None:intergenic
TGAGTCTTGAATGGTTGTGA+GGG 0.592752 8_1:-123544 Msa1170800:three_prime_UTR
GTTTGGCAGTTCACAGACAA+AGG 0.593004 8_1:-125613 Msa1170800:intron
TTTGAGAGCAAGTATGCTTG+CGG 0.593125 8_1:-124735 Msa1170800:CDS
CTCTGAATCCTTCCCAGCTG+CGG 0.594301 8_1:+125470 None:intergenic
GTCGCCAACCTTGGAAATGG+TGG 0.598690 8_1:+126560 None:intergenic
AAAAGAAGCAAAAGCTCATG+TGG 0.605706 8_1:+123196 None:intergenic
TGTAGCCTGCATCACGTCTG+CGG 0.606500 8_1:+123972 None:intergenic
ATCCGATTTCTCCATTCATG+AGG 0.608906 8_1:+125236 None:intergenic
GTTCTAAACCAAACAAACAA+TGG 0.612833 8_1:-123828 Msa1170800:three_prime_UTR
TGCATCCCCATCGGTTACGG+TGG 0.616687 8_1:+124967 None:intergenic
ACCAGGAATGCTCTAAGTGT+GGG 0.617004 8_1:-123948 Msa1170800:CDS
ACTGATGAGATCATTGGAGG+AGG 0.619983 8_1:+125408 None:intergenic
GAGTCGAATTGCCAAAGTAG+AGG 0.627075 8_1:-126474 Msa1170800:CDS
TGTCGAGATATCACATACAA+AGG 0.627297 8_1:-125036 Msa1170800:CDS
ATTGATAGATGCATCCCCAT+CGG 0.631985 8_1:+124958 None:intergenic
TCATCATGACTCATCGTGAG+TGG 0.634861 8_1:-123219 Msa1170800:three_prime_UTR
GAATATGTCAGAACCGCACA+AGG 0.636751 8_1:-126103 Msa1170800:CDS
TGATAATAGTGTGAATCGCA+CGG 0.638695 8_1:-124600 Msa1170800:CDS
CATGACAAATATGTCCAACA+AGG 0.639906 8_1:+126504 None:intergenic
ATCATCGGCTGCGACTCTAG+AGG 0.643962 8_1:+125349 None:intergenic
TTGAGTCTTGAATGGTTGTG+AGG 0.646506 8_1:-123545 Msa1170800:three_prime_UTR
ATTCAGAGCCTTCAGTCACG+AGG 0.647455 8_1:-125455 Msa1170800:CDS
ATCTGGTAAGATAGAGCTCG+AGG 0.650296 8_1:-126023 Msa1170800:CDS
GGAATGCTCTAAGTGTGGGA+TGG 0.650848 8_1:-123944 Msa1170800:CDS
CCTCGAAACGGAGAACATCA+GGG 0.651041 8_1:-124671 Msa1170800:CDS
GAGGTTGTTGGTGACAAAGG+AGG 0.651199 8_1:-123285 Msa1170800:three_prime_UTR
TCGGTAGAGGATACAGGCGA+TGG 0.653480 8_1:-125376 Msa1170800:CDS
ATGAATGGAGTGAATATCAT+CGG 0.658951 8_1:+125334 None:intergenic
TTCAGAGCCTTCAGTCACGA+GGG 0.661654 8_1:-125454 Msa1170800:CDS
GAGATCAGAACTCCAATGAA+CGG 0.671093 8_1:-126273 Msa1170800:CDS
TAGAAGCCATCACTATGCTG+AGG 0.678727 8_1:-124520 Msa1170800:CDS
CAAACTGGAAGTGAATGAGA+GGG 0.679937 8_1:-123466 Msa1170800:three_prime_UTR
TTTGTCCACCGTAACCGATG+GGG 0.692151 8_1:-124972 Msa1170800:CDS
AGCCATACCATTAAACTCTG+AGG 0.695139 8_1:+125096 None:intergenic
TCTCGTGCGAAACAGTAGCA+AGG 0.699858 8_1:+126292 None:intergenic
GGTGTGGTTTGTGTAAGCAG+TGG 0.702118 8_1:-124545 Msa1170800:CDS
AGTGAACTTACTCTGAGCTG+AGG 0.703543 8_1:+123753 None:intergenic
AAACATGCATCAAATTGATG+GGG 0.720884 8_1:+124494 None:intergenic
TTCACTCCATTCATGCAGGT+AGG 0.724284 8_1:-125325 Msa1170800:CDS
GTGGACGAGAAAGAACCAAG+AGG 0.763430 8_1:+125430 None:intergenic
GTATTGATATATGTATGTAG+AGG 0.764786 8_1:-123353 Msa1170800:three_prime_UTR
TCCATCTCGAGAAAACACGG+AGG 0.824559 8_1:-125298 Msa1170800:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TATTAAATTTTTATTTATTT+AGG - chr8_1:123219-123238 Msa1170800:three_prime_UTR 0.0%
!! TTAAATAAAATAATAAAAAA+AGG + chr8_1:126519-126538 None:intergenic 0.0%
!! AAAAACAATATTATAAACCA+AGG + chr8_1:125972-125991 None:intergenic 15.0%
!!! GTTTATAATATTGTTTTTTG+TGG - chr8_1:125974-125993 Msa1170800:CDS 15.0%
!! TAAATAAAATGAGATAAAAC+AGG - chr8_1:126536-126555 Msa1170800:CDS 15.0%
!!! TGTTTGGTTTTATTCTTTTT+TGG - chr8_1:123747-123766 Msa1170800:intron 20.0%
!!! GTTTGGTTTTATTCTTTTTT+GGG - chr8_1:123748-123767 Msa1170800:intron 20.0%
!! ACAAATAATTACAAATCTCA+TGG - chr8_1:123840-123859 Msa1170800:three_prime_UTR 20.0%
!! CAAATAATTACAAATCTCAT+GGG - chr8_1:123841-123860 Msa1170800:three_prime_UTR 20.0%
!! AACTAAAATATGCAATTGTT+TGG - chr8_1:123954-123973 Msa1170800:CDS 20.0%
!!! TTAACGAGAATAAATAGTTT+TGG + chr8_1:124760-124779 None:intergenic 20.0%
!! GTCGATTATAAATGAAGTTT+TGG - chr8_1:123522-123541 Msa1170800:three_prime_UTR 25.0%
!! TGATTCTGAAAATTTCAACA+TGG + chr8_1:123708-123727 None:intergenic 25.0%
! TTTCAGAATCATAACTTAAC+AGG - chr8_1:123717-123736 Msa1170800:intron 25.0%
!!! AAAGTTGTTGAAGTTGATAA+AGG - chr8_1:124721-124740 Msa1170800:CDS 25.0%
! TTTCATTGAAAACTCTTTCT+AGG - chr8_1:125204-125223 Msa1170800:CDS 25.0%
!! CAAGTTTTTGTGAATATGAA+CGG - chr8_1:125257-125276 Msa1170800:CDS 25.0%
! GTATTCTAACTTCACAAAAT+AGG + chr8_1:125328-125347 None:intergenic 25.0%
!!! TTTTTGTTTCTCAAGATGAT+TGG + chr8_1:125727-125746 None:intergenic 25.0%
! TAGTACATTAATAAGAACCT+TGG - chr8_1:125952-125971 Msa1170800:CDS 25.0%
!!! ATAATATTGTTTTTTGTGGC+AGG - chr8_1:125978-125997 Msa1170800:CDS 25.0%
!!! TAATATTGTTTTTTGTGGCA+GGG - chr8_1:125979-125998 Msa1170800:CDS 25.0%
!!! ACATAAGAGCAAAGTTTTAT+TGG - chr8_1:126010-126029 Msa1170800:CDS 25.0%
!! GTATTGATATATGTATGTAG+AGG - chr8_1:126231-126250 Msa1170800:intron 25.0%
! CTGAAAAAGTAAGTACAAAT+CGG + chr8_1:126476-126495 None:intergenic 25.0%
! ATTGATTCAGCTCATATCAT+TGG + chr8_1:123256-123275 None:intergenic 30.0%
TAATATCCCGAGTATATCTA+TGG - chr8_1:123371-123390 Msa1170800:three_prime_UTR 30.0%
AAGAAACCATAGATATACTC+GGG + chr8_1:123380-123399 None:intergenic 30.0%
GAAGAAACCATAGATATACT+CGG + chr8_1:123381-123400 None:intergenic 30.0%
GAAAATCCAATTTAAGAGCA+TGG + chr8_1:123412-123431 None:intergenic 30.0%
! TGCTCTTAAATTGGATTTTC+AGG - chr8_1:123412-123431 Msa1170800:three_prime_UTR 30.0%
! GCTCTTAAATTGGATTTTCA+GGG - chr8_1:123413-123432 Msa1170800:three_prime_UTR 30.0%
!!! TATAAATGAAGTTTTGGACC+AGG - chr8_1:123528-123547 Msa1170800:three_prime_UTR 30.0%
!! CTATTTTCTGAGAAATCTCA+AGG - chr8_1:123628-123647 Msa1170800:intron 30.0%
! TTCTGAAAATTTCAACATGG+TGG + chr8_1:123705-123724 None:intergenic 30.0%
AAAGTTAGCAGTTTATGTCT+CGG - chr8_1:123774-123793 Msa1170800:three_prime_UTR 30.0%
CTTGTAAATTAGTCCACAAA+AGG + chr8_1:123922-123941 None:intergenic 30.0%
AATCAAACTGATGAGATCAT+TGG + chr8_1:124185-124204 None:intergenic 30.0%
TCTCATCAGTTTGATTGTAT+CGG - chr8_1:124189-124208 Msa1170800:intron 30.0%
ATGAATGGAGTGAATATCAT+CGG + chr8_1:124253-124272 None:intergenic 30.0%
ATTTGAATTAGGACATGCAT+TGG + chr8_1:124425-124444 None:intergenic 30.0%
! GTTTGAAGCTCATTTGAATT+AGG + chr8_1:124436-124455 None:intergenic 30.0%
! ATAGTTTCAGATTTGAAGCA+AGG - chr8_1:124589-124608 Msa1170800:CDS 30.0%
!!! ACGAGAATAAATAGTTTTGG+AGG + chr8_1:124757-124776 None:intergenic 30.0%
AAACATGCATCAAATTGATG+GGG + chr8_1:125093-125112 None:intergenic 30.0%
GAAACATGCATCAAATTGAT+GGG + chr8_1:125094-125113 None:intergenic 30.0%
TGAAACATGCATCAAATTGA+TGG + chr8_1:125095-125114 None:intergenic 30.0%
TCAATTTGATGCATGTTTCA+TGG - chr8_1:125095-125114 Msa1170800:CDS 30.0%
!! AACTCTTTCTAGGATGAAAA+TGG - chr8_1:125214-125233 Msa1170800:CDS 30.0%
TCACAAAATAGGTCAAAAAC+AGG + chr8_1:125317-125336 None:intergenic 30.0%
TAAAGTTGTTCAGCTTCAAA+TGG + chr8_1:125683-125702 None:intergenic 30.0%
! GTTCTAAACCAAACAAACAA+TGG - chr8_1:125756-125775 Msa1170800:CDS 30.0%
TAAACCAAACAAACAATGGA+AGG - chr8_1:125760-125779 Msa1170800:CDS 30.0%
!!! AAGAGCAAAGTTTTATTGGT+TGG - chr8_1:126014-126033 Msa1170800:CDS 30.0%
ATAGTCTCACTAATTCTTCT+AGG - chr8_1:126068-126087 Msa1170800:CDS 30.0%
TGATTGAATGCATAGATAGA+AGG - chr8_1:126272-126291 Msa1170800:CDS 30.0%
CATGACAAATATGTCCAACA+AGG + chr8_1:123083-123102 None:intergenic 35.0%
! TTGGTAATCATCCTCTACTT+TGG + chr8_1:123124-123143 None:intergenic 35.0%
! TTTTAAGCACCATCATCTCT+TGG + chr8_1:123143-123162 None:intergenic 35.0%
ACAACAAAAATTGCAGACCT+GGG + chr8_1:123196-123215 None:intergenic 35.0%
TAACCTAAAACACCGTTCAT+TGG + chr8_1:123326-123345 None:intergenic 35.0%
! GGTTCTGACATATTCTTGTT+GGG + chr8_1:123476-123495 None:intergenic 35.0%
GTTCGATATACGAGCAATTA+TGG - chr8_1:123591-123610 Msa1170800:intron 35.0%
TCTGAGAAATCTCAAGGAAA+AGG - chr8_1:123634-123653 Msa1170800:intron 35.0%
ATTATTTGTCGAAACCTTCC+AGG + chr8_1:123829-123848 None:intergenic 35.0%
CGAGTTTAAAGAGGTTTGAT+AGG + chr8_1:123897-123916 None:intergenic 35.0%
CAAAAGGAACGAGTTTAAAG+AGG + chr8_1:123906-123925 None:intergenic 35.0%
! CTTTAAACTCGTTCCTTTTG+TGG - chr8_1:123906-123925 Msa1170800:CDS 35.0%
CTCTCTCAACTTCTATTGAA+TGG + chr8_1:124036-124055 None:intergenic 35.0%
GATGCAGAACATACATTAAG+TGG - chr8_1:124070-124089 Msa1170800:intron 35.0%
AAGCATTAGCAAGTGTTTAG+TGG - chr8_1:124324-124343 Msa1170800:intron 35.0%
AGCATTAGCAAGTGTTTAGT+GGG - chr8_1:124325-124344 Msa1170800:intron 35.0%
AACCTCAGAGTTTAATGGTA+TGG - chr8_1:124486-124505 Msa1170800:CDS 35.0%
TGTCGAGATATCACATACAA+AGG - chr8_1:124548-124567 Msa1170800:CDS 35.0%
AGATATCACATACAAAGGCT+TGG - chr8_1:124553-124572 Msa1170800:CDS 35.0%
CGCACTTTGTGAATAACATT+AGG - chr8_1:124698-124717 Msa1170800:CDS 35.0%
!!! TTCTTTTAGAGCGAGTTCTA+CGG - chr8_1:124789-124808 Msa1170800:CDS 35.0%
!! AAAGGTTTTGTGACAACTGT+TGG + chr8_1:124832-124851 None:intergenic 35.0%
TGATAATAGTGTGAATCGCA+CGG - chr8_1:124984-125003 Msa1170800:CDS 35.0%
!! GCTGGTGCTTTGAAAAAATA+TGG - chr8_1:125012-125031 Msa1170800:CDS 35.0%
!! GCTTTGAAAAAATATGGAGC+TGG - chr8_1:125018-125037 Msa1170800:CDS 35.0%
GGATATTCAAATGCCTGAAA+TGG - chr8_1:125116-125135 Msa1170800:CDS 35.0%
ATTCAAATGCCTGAAATGGA+TGG - chr8_1:125120-125139 Msa1170800:CDS 35.0%
TTCAAATGCCTGAAATGGAT+GGG - chr8_1:125121-125140 Msa1170800:CDS 35.0%
! AGTGTGCTAAGTTTTGCAAT+TGG + chr8_1:125416-125435 None:intergenic 35.0%
! GTTTGTTCATCTACCCATTT+TGG - chr8_1:125583-125602 Msa1170800:CDS 35.0%
AGCTGAACAACTTTATAGAG+AGG - chr8_1:125688-125707 Msa1170800:intron 35.0%
TGATCCTTCCATTGTTTGTT+TGG + chr8_1:125767-125786 None:intergenic 35.0%
GGCAAATTCACTATATTCCA+TGG - chr8_1:126089-126108 Msa1170800:CDS 35.0%
TGCATAGATAGAAGGAAATG+AGG - chr8_1:126280-126299 Msa1170800:CDS 35.0%
ATAGAAGGAAATGAGGTTGT+TGG - chr8_1:126287-126306 Msa1170800:CDS 35.0%
AAAAGAAGCAAAAGCTCATG+TGG + chr8_1:126391-126410 None:intergenic 35.0%
! ACATGAGCTTTTGCTTCTTT+TGG - chr8_1:126390-126409 Msa1170800:intron 35.0%
!!! TTGAGTGATCCACCATTTTT+TGG - chr8_1:126450-126469 Msa1170800:CDS 35.0%
AGTACAAATCGGCCAAAAAA+TGG + chr8_1:126465-126484 None:intergenic 35.0%
AACAGAAACCACCATTTCCA+AGG - chr8_1:123016-123035 Msa1170800:three_prime_UTR 40.0%
! CAACAAGGAGTGCAATAACA+AGG + chr8_1:123068-123087 None:intergenic 40.0%
!! CTTGTTATTGCACTCCTTGT+TGG - chr8_1:123066-123085 Msa1170800:three_prime_UTR 40.0%
GGATGATTACCAAGAGATGA+TGG - chr8_1:123131-123150 Msa1170800:three_prime_UTR 40.0%
GACAACAAAAATTGCAGACC+TGG + chr8_1:123197-123216 None:intergenic 40.0%
GAGATCAGAACTCCAATGAA+CGG - chr8_1:123311-123330 Msa1170800:three_prime_UTR 40.0%
! ACTCCAATGAACGGTGTTTT+AGG - chr8_1:123320-123339 Msa1170800:three_prime_UTR 40.0%
! CCAATTTAAGAGCATGGTCA+TGG + chr8_1:123406-123425 None:intergenic 40.0%
CCATGACCATGCTCTTAAAT+TGG - chr8_1:123403-123422 Msa1170800:three_prime_UTR 40.0%
AGGGATGATGAATATGCTCA+TGG - chr8_1:123432-123451 Msa1170800:three_prime_UTR 40.0%
! CGGTTCTGACATATTCTTGT+TGG + chr8_1:123477-123496 None:intergenic 40.0%
TACCAGATTCAATCTTTGCC+TGG + chr8_1:123549-123568 None:intergenic 40.0%
ATCTCAAGGAAAAGGAGTAG+AGG - chr8_1:123642-123661 Msa1170800:intron 40.0%
CTTAACAGGCTTTACGTGTT+TGG - chr8_1:123731-123750 Msa1170800:intron 40.0%
TCTCATGGGTAACTCGATTA+AGG - chr8_1:123855-123874 Msa1170800:exon 40.0%
AGAGGTTTGATAGGACTCAA+TGG + chr8_1:123888-123907 None:intergenic 40.0%
TGTGACTATCCATCTTGTTG+AGG - chr8_1:124003-124022 Msa1170800:CDS 40.0%
CAAACTGATGAGATCATTGG+AGG + chr8_1:124182-124201 None:intergenic 40.0%
! CAGTTTGATTGTATCGGTAG+AGG - chr8_1:124195-124214 Msa1170800:intron 40.0%
! ATTGTATCGGTAGAGGATAC+AGG - chr8_1:124202-124221 Msa1170800:intron 40.0%
GATATTCACTCCATTCATGC+AGG - chr8_1:124255-124274 Msa1170800:intron 40.0%
ATCCGATTTCTCCATTCATG+AGG + chr8_1:124351-124370 None:intergenic 40.0%
!! GTGAAAGTGCTTCCAATCTT+CGG + chr8_1:124385-124404 None:intergenic 40.0%
AGCCATACCATTAAACTCTG+AGG + chr8_1:124491-124510 None:intergenic 40.0%
ATTGATAGATGCATCCCCAT+CGG + chr8_1:124629-124648 None:intergenic 40.0%
TGGGGATGCATCTATCAATA+TGG - chr8_1:124630-124649 Msa1170800:CDS 40.0%
TATGGTCCTGATTGAACAAG+AGG - chr8_1:124648-124667 Msa1170800:CDS 40.0%
TCCTGATTGAACAAGAGGTT+TGG - chr8_1:124653-124672 Msa1170800:CDS 40.0%
CCTGATTGAACAAGAGGTTT+GGG - chr8_1:124654-124673 Msa1170800:CDS 40.0%
TTTGAGAGCAAGTATGCTTG+CGG - chr8_1:124849-124868 Msa1170800:CDS 40.0%
GCTTCACTACAAAGAGCAAT+GGG - chr8_1:124871-124890 Msa1170800:CDS 40.0%
TACAAAGAGCAATGGGTGTT+GGG - chr8_1:124878-124897 Msa1170800:CDS 40.0%
AACAAAGGGAATCCTCGAAA+CGG - chr8_1:124901-124920 Msa1170800:CDS 40.0%
GAAAAAATATGGAGCTGGTG+TGG - chr8_1:125023-125042 Msa1170800:CDS 40.0%
AATGCATACCCATCCATTTC+AGG + chr8_1:125132-125151 None:intergenic 40.0%
AAACTTGAATCTGTGACTGC+AGG + chr8_1:125244-125263 None:intergenic 40.0%
ATGAACGGTTCGATCTTGAT+TGG - chr8_1:125272-125291 Msa1170800:CDS 40.0%
TAGTCGCACATCATTCACAT+GGG + chr8_1:125377-125396 None:intergenic 40.0%
ATAGTCGCACATCATTCACA+TGG + chr8_1:125378-125397 None:intergenic 40.0%
GCTAATAACCATTTCCCAAC+AGG - chr8_1:125504-125523 Msa1170800:CDS 40.0%
GGTTGGAATTGAGTCTTGAA+TGG - chr8_1:126031-126050 Msa1170800:CDS 40.0%
TTGAGTCTTGAATGGTTGTG+AGG - chr8_1:126039-126058 Msa1170800:CDS 40.0%
TGAGTCTTGAATGGTTGTGA+GGG - chr8_1:126040-126059 Msa1170800:CDS 40.0%
ATTCCATGGTAACTGCAAAC+TGG - chr8_1:126103-126122 Msa1170800:CDS 40.0%
CAAACTGGAAGTGAATGAGA+GGG - chr8_1:126118-126137 Msa1170800:CDS 40.0%
AGTAGTATTGCATGCAGAAG+AGG + chr8_1:126167-126186 None:intergenic 40.0%
!! AATGAGGTTGTTGGTGACAA+AGG - chr8_1:126296-126315 Msa1170800:CDS 40.0%
TTCACATGCACTATGGTCTA+TGG + chr8_1:126334-126353 None:intergenic 40.0%
CTCGTAATTCACATGCACTA+TGG + chr8_1:126341-126360 None:intergenic 40.0%
ACAAATCGGCCAAAAAATGG+TGG + chr8_1:126462-126481 None:intergenic 40.0%
GAAACCACCATTTCCAAGGT+TGG - chr8_1:123020-123039 Msa1170800:three_prime_UTR 45.0%
GAGTCGAATTGCCAAAGTAG+AGG - chr8_1:123110-123129 Msa1170800:three_prime_UTR 45.0%
AGCTGATGTTGCTAAATCCC+AGG - chr8_1:123176-123195 Msa1170800:three_prime_UTR 45.0%
GAATATGTCAGAACCGCACA+AGG - chr8_1:123481-123500 Msa1170800:three_prime_UTR 45.0%
GACCAGGCAAAGATTGAATC+TGG - chr8_1:123544-123563 Msa1170800:three_prime_UTR 45.0%
ATCTGGTAAGATAGAGCTCG+AGG - chr8_1:123561-123580 Msa1170800:three_prime_UTR 45.0%
AGCAGTTTATGTCTCGGATC+AGG - chr8_1:123780-123799 Msa1170800:three_prime_UTR 45.0%
CAGGTTCCTCAACAGCTTAT+AGG - chr8_1:123799-123818 Msa1170800:three_prime_UTR 45.0%
GGATCACCTATAAGCTGTTG+AGG + chr8_1:123808-123827 None:intergenic 45.0%
CAACAGCTTATAGGTGATCC+TGG - chr8_1:123808-123827 Msa1170800:three_prime_UTR 45.0%
AGCTTATAGGTGATCCTGGA+AGG - chr8_1:123812-123831 Msa1170800:three_prime_UTR 45.0%
GTTTGGCAGTTCACAGACAA+AGG - chr8_1:123971-123990 Msa1170800:CDS 45.0%
GACTATCCATCTTGTTGAGG+AGG - chr8_1:124006-124025 Msa1170800:CDS 45.0%
GGAAAACCTCCTCAACAAGA+TGG + chr8_1:124015-124034 None:intergenic 45.0%
ACTGATGAGATCATTGGAGG+AGG + chr8_1:124179-124198 None:intergenic 45.0%
TTCACTCCATTCATGCAGGT+AGG - chr8_1:124259-124278 Msa1170800:intron 45.0%
CCATCCATCTCGAGAAAACA+CGG - chr8_1:124283-124302 Msa1170800:intron 45.0%
AAACACGGAGGAACTGGTAT+TGG - chr8_1:124298-124317 Msa1170800:intron 45.0%
! TGTTTAGTGGGCCTCATGAA+TGG - chr8_1:124337-124356 Msa1170800:intron 45.0%
GGCCTCATGAATGGAGAAAT+CGG - chr8_1:124346-124365 Msa1170800:intron 45.0%
TTTGTGAGCGAACCGAAGAT+TGG - chr8_1:124370-124389 Msa1170800:intron 45.0%
!! CCATTAAACTCTGAGGTTGC+AGG + chr8_1:124484-124503 None:intergenic 45.0%
CCTGCAACCTCAGAGTTTAA+TGG - chr8_1:124481-124500 Msa1170800:CDS 45.0%
CCCAAACCTCTTGTTCAATC+AGG + chr8_1:124657-124676 None:intergenic 45.0%
GCAAGCATACTTGCTCTCAA+AGG + chr8_1:124850-124869 None:intergenic 45.0%
GGCTTCACTACAAAGAGCAA+TGG - chr8_1:124870-124889 Msa1170800:CDS 45.0%
CTACAAAGAGCAATGGGTGT+TGG - chr8_1:124877-124896 Msa1170800:CDS 45.0%
!! CAATGGGTGTTGGGAACAAA+GGG - chr8_1:124887-124906 Msa1170800:CDS 45.0%
TCTCTCAAGCATCTTCTCTC+TGG - chr8_1:124940-124959 Msa1170800:CDS 45.0%
CTCTCAAGCATCTTCTCTCT+GGG - chr8_1:124941-124960 Msa1170800:CDS 45.0%
TAGAAGCCATCACTATGCTG+AGG - chr8_1:125064-125083 Msa1170800:CDS 45.0%
CATGCATCAAATTGATGGGG+TGG + chr8_1:125090-125109 None:intergenic 45.0%
ATGTGCGACTATTTGACTGC+AGG - chr8_1:125386-125405 Msa1170800:CDS 45.0%
TGTGCGACTATTTGACTGCA+GGG - chr8_1:125387-125406 Msa1170800:CDS 45.0%
GCTTCAAACCTGTTGGGAAA+TGG + chr8_1:125515-125534 None:intergenic 45.0%
TCTGCGGTCATAGCCAAAAT+GGG + chr8_1:125599-125618 None:intergenic 45.0%
! ACCAGGAATGCTCTAAGTGT+GGG - chr8_1:125636-125655 Msa1170800:intron 45.0%
AGTGAACTTACTCTGAGCTG+AGG + chr8_1:125834-125853 None:intergenic 45.0%
CTTCCAGTTTGCAGTTACCA+TGG + chr8_1:126109-126128 None:intergenic 45.0%
GCAAACTGGAAGTGAATGAG+AGG - chr8_1:126117-126136 Msa1170800:CDS 45.0%
TCATCATGACTCATCGTGAG+TGG - chr8_1:126365-126384 Msa1170800:intron 45.0%
ACCATTTCCAAGGTTGGCGA+CGG - chr8_1:123026-123045 Msa1170800:three_prime_UTR 50.0%
TTGGCGACGGGTACATCAAT+TGG - chr8_1:123039-123058 Msa1170800:three_prime_UTR 50.0%
TCTCGTGCGAAACAGTAGCA+AGG + chr8_1:123295-123314 None:intergenic 50.0%
! AGCTTTTCCACTGCCTTGTG+CGG + chr8_1:123497-123516 None:intergenic 50.0%
ACAAGGCAGTGGAAAAGCTC+TGG - chr8_1:123498-123517 Msa1170800:three_prime_UTR 50.0%
AGTGGTTTCCCAGTTGCTGA+TGG - chr8_1:124088-124107 Msa1170800:intron 50.0%
ATTCAGAGCCTTCAGTCACG+AGG - chr8_1:124129-124148 Msa1170800:intron 50.0%
TTCAGAGCCTTCAGTCACGA+GGG - chr8_1:124130-124149 Msa1170800:intron 50.0%
GTGGACGAGAAAGAACCAAG+AGG + chr8_1:124157-124176 None:intergenic 50.0%
GATGAGATCATTGGAGGAGG+TGG + chr8_1:124176-124195 None:intergenic 50.0%
GATGGACCTACCTGCATGAA+TGG + chr8_1:124268-124287 None:intergenic 50.0%
! CCGTGTTTTCTCGAGATGGA+TGG + chr8_1:124286-124305 None:intergenic 50.0%
TCCATCTCGAGAAAACACGG+AGG - chr8_1:124286-124305 Msa1170800:intron 50.0%
! TCCTCCGTGTTTTCTCGAGA+TGG + chr8_1:124290-124309 None:intergenic 50.0%
TCGAGAAAACACGGAGGAAC+TGG - chr8_1:124292-124311 Msa1170800:intron 50.0%
!! AACTCTGAGGTTGCAGGATG+AGG + chr8_1:124478-124497 None:intergenic 50.0%
TCTCGACACTTCAGCACGAA+CGG + chr8_1:124536-124555 None:intergenic 50.0%
GTTTGTCCACCGTAACCGAT+GGG - chr8_1:124611-124630 Msa1170800:CDS 50.0%
TTTGTCCACCGTAACCGATG+GGG - chr8_1:124612-124631 Msa1170800:CDS 50.0%
! AGATGCATCCCCATCGGTTA+CGG + chr8_1:124623-124642 None:intergenic 50.0%
!! GCAATGGGTGTTGGGAACAA+AGG - chr8_1:124886-124905 Msa1170800:CDS 50.0%
TCCTCGAAACGGAGAACATC+AGG - chr8_1:124912-124931 Msa1170800:CDS 50.0%
CCTCGAAACGGAGAACATCA+GGG - chr8_1:124913-124932 Msa1170800:CDS 50.0%
! GGTGTGGTTTGTGTAAGCAG+TGG - chr8_1:125039-125058 Msa1170800:CDS 50.0%
CGCGTAGCTTCAAACCTGTT+GGG + chr8_1:125521-125540 None:intergenic 50.0%
ACGCGTAGCTTCAAACCTGT+TGG + chr8_1:125522-125541 None:intergenic 50.0%
GTCTGCGGTCATAGCCAAAA+TGG + chr8_1:125600-125619 None:intergenic 50.0%
! CACCAGGAATGCTCTAAGTG+TGG - chr8_1:125635-125654 Msa1170800:intron 50.0%
! TCCCACACTTAGAGCATTCC+TGG + chr8_1:125640-125659 None:intergenic 50.0%
! GGAATGCTCTAAGTGTGGGA+TGG - chr8_1:125640-125659 Msa1170800:intron 50.0%
! TGCTCTAAGTGTGGGATGGA+TGG - chr8_1:125644-125663 Msa1170800:intron 50.0%
!! GAGGTTGTTGGTGACAAAGG+AGG - chr8_1:126299-126318 Msa1170800:intron 50.0%
GTCGCCAACCTTGGAAATGG+TGG + chr8_1:123027-123046 None:intergenic 55.0%
CCATTTCCAAGGTTGGCGAC+GGG - chr8_1:123027-123046 Msa1170800:three_prime_UTR 55.0%
CTCTGAATCCTTCCCAGCTG+CGG + chr8_1:124117-124136 None:intergenic 55.0%
AAGAGGTCCCTCGTGACTGA+AGG + chr8_1:124140-124159 None:intergenic 55.0%
TTCAGTCACGAGGGACCTCT+TGG - chr8_1:124139-124158 Msa1170800:intron 55.0%
TCGGTAGAGGATACAGGCGA+TGG - chr8_1:124208-124227 Msa1170800:intron 55.0%
! ATCATCGGCTGCGACTCTAG+AGG + chr8_1:124238-124257 None:intergenic 55.0%
CTGAGGTTGCAGGATGAGGT+TGG + chr8_1:124474-124493 None:intergenic 55.0%
ACTTCAGCACGAACGGGTCT+CGG + chr8_1:124529-124548 None:intergenic 55.0%
CTCGACACTTCAGCACGAAC+GGG + chr8_1:124535-124554 None:intergenic 55.0%
GGTTTGTCCACCGTAACCGA+TGG - chr8_1:124610-124629 Msa1170800:CDS 55.0%
CCCTGATGTTCTCCGTTTCG+AGG + chr8_1:124916-124935 None:intergenic 55.0%
TATGACCGCAGACGTGATGC+AGG - chr8_1:125607-125626 Msa1170800:CDS 55.0%
TGTAGCCTGCATCACGTCTG+CGG + chr8_1:125615-125634 None:intergenic 55.0%
AGGATCAGCGTCTGCTCGTT+AGG - chr8_1:125780-125799 Msa1170800:CDS 55.0%
CCCGTCGCCAACCTTGGAAA+TGG + chr8_1:123030-123049 None:intergenic 60.0%
GATGTACCCGTCGCCAACCT+TGG + chr8_1:123036-123055 None:intergenic 60.0%
GTCAGAACCGCACAAGGCAG+TGG - chr8_1:123487-123506 Msa1170800:three_prime_UTR 60.0%
TGCGGCGACCATCAGCAACT+GGG + chr8_1:124099-124118 None:intergenic 60.0%
! TGCATCCCCATCGGTTACGG+TGG + chr8_1:124620-124639 None:intergenic 60.0%
GTGAATCGCACGGTAGCAGC+TGG - chr8_1:124994-125013 Msa1170800:CDS 60.0%
GGGTGGCCTCAGCATAGTGA+TGG + chr8_1:125073-125092 None:intergenic 60.0%
CGTGATGCAGGCTACACACC+AGG - chr8_1:125619-125638 Msa1170800:intron 60.0%
CTGCGGCGACCATCAGCAAC+TGG + chr8_1:124100-124119 None:intergenic 65.0%
TTGCTGATGGTCGCCGCAGC+TGG - chr8_1:124101-124120 Msa1170800:intron 65.0%
TGCTGATGGTCGCCGCAGCT+GGG - chr8_1:124102-124121 Msa1170800:intron 65.0%
GATGGTCGCCGCAGCTGGGA+AGG - chr8_1:124106-124125 Msa1170800:intron 70.0%
Chromosome Type Strat End Strand Name
chr8_1 gene 123009 126597 123009 ID=Msa1170800;Name=Msa1170800
chr8_1 mRNA 123009 126597 123009 ID=Msa1170800-mRNA-1;Parent=Msa1170800;Name=Msa1170800-mRNA-1;_AED=0.04;_eAED=0.04;_QI=0|0.83|0.71|1|0.83|0.71|7|704|660
chr8_1 exon 123009 123606 123009 ID=Msa1170800-mRNA-1:exon:31;Parent=Msa1170800-mRNA-1
chr8_1 exon 123764 124080 123764 ID=Msa1170800-mRNA-1:exon:30;Parent=Msa1170800-mRNA-1
chr8_1 exon 124464 125626 124464 ID=Msa1170800-mRNA-1:exon:29;Parent=Msa1170800-mRNA-1
chr8_1 exon 125730 125867 125730 ID=Msa1170800-mRNA-1:exon:28;Parent=Msa1170800-mRNA-1
chr8_1 exon 125943 126172 125943 ID=Msa1170800-mRNA-1:exon:27;Parent=Msa1170800-mRNA-1
chr8_1 exon 126265 126316 126265 ID=Msa1170800-mRNA-1:exon:26;Parent=Msa1170800-mRNA-1
chr8_1 exon 126409 126597 126409 ID=Msa1170800-mRNA-1:exon:25;Parent=Msa1170800-mRNA-1
chr8_1 CDS 126409 126597 126409 ID=Msa1170800-mRNA-1:cds;Parent=Msa1170800-mRNA-1
chr8_1 CDS 126265 126316 126265 ID=Msa1170800-mRNA-1:cds;Parent=Msa1170800-mRNA-1
chr8_1 CDS 125943 126172 125943 ID=Msa1170800-mRNA-1:cds;Parent=Msa1170800-mRNA-1
chr8_1 CDS 125730 125867 125730 ID=Msa1170800-mRNA-1:cds;Parent=Msa1170800-mRNA-1
chr8_1 CDS 124464 125626 124464 ID=Msa1170800-mRNA-1:cds;Parent=Msa1170800-mRNA-1
chr8_1 CDS 123870 124080 123870 ID=Msa1170800-mRNA-1:cds;Parent=Msa1170800-mRNA-1
chr8_1 three_prime_UTR 123764 123869 123764 ID=Msa1170800-mRNA-1:three_prime_utr;Parent=Msa1170800-mRNA-1
chr8_1 three_prime_UTR 123009 123606 123009 ID=Msa1170800-mRNA-1:three_prime_utr;Parent=Msa1170800-mRNA-1
Gene Sequence

>Msa1170800

AGGTTCAAACAGAAACCACCATTTCCAAGGTTGGCGACGGGTACATCAATTGGCATCCTTGTTATTGCACTCCTTGTTGGACATATTTGTCATGCAACTGTGAGTCGAATTGCCAAAGTAGAGGATGATTACCAAGAGATGATGGTGCTTAAAAAACGAGCTGAAGCAGCTGATGTTGCTAAATCCCAGTTCCTTGCTACTGTTTCGCACGAGATCAGAACTCCAATGAACGGTGTTTTAGGGATGATGAATATGCTCATGGACACTGATCTAGATGTAACCCAACAAGAATATGTCAGAACCGCACAAGGCAGTGGAAAAGCTCTGGTGTCGATTATAAATGAAGTTTTGGACCAGGCAAAGATTGAATCTGGTAAGATAGAGCTCGAGGCTGTGCTGTTCGATATACGAGCAATTATGGACGATGTGTTATCGCTATTTTCTGAGAAATCTCAAGGAAAAGGAGTAGAGGCTTTACGTGTTTGGTTTTATTCTTTTTTGGGAGCAAAGTTAGCAGTTTATGTCTCGGATCAGGTTCCTCAACAGCTTATAGGTGATCCTGGAAGGTTTCGACAAATAATTACAAATCTCATGGGTAACTCGATTAAGTTCACAGACAAAGGACATATCTTTGTGACTATCCATCTTGTTGAGGAGGTTTTCCATTCAATAGAAGTTGAGAGAGAATCTACTTCAAAAGATGCAGAACATACATTAAGTGGTTTCCCAGTTGCTGATGGTCGCCGCAGCTGGGAAGGATTCAGAGCCTTCAGTCACGAGGGACCTCTTGGTTCTTTCTCGTCCACCTCCTCCAATGATCTCATCAGTTTGATTGTATCGGTAGAGGATACAGGCGATGGTATTCCTCTAGAGTCGCAGCCGATGATATTCACTCCATTCATGCAGGTAGGTCCATCCATCTCGAGAAAACACGGAGGAACTGGTATTGGTCTAAGCATTAGCAAGTGTTTAGTGGGCCTCATGAATGGAGAAATCGGATTTGTGAGCGAACCGAAGATTGGAAGCACTTTCACATTTACAGCTGTGTTCACCAATGCATGTCCTAATTCAAATGAGCTTCAAACTCAACAAATCAATAACCAACCTCATCCTGCAACCTCAGAGTTTAATGGTATGGCTGCACTAGTTATTGATCCGAGACCCGTTCGTGCTGAAGTGTCGAGATATCACATACAAAGGCTTGGCGTTCGTGTTGAAATAGTTTCAGATTTGAAGCAAGGTTTGTCCACCGTAACCGATGGGGATGCATCTATCAATATGGTCCTGATTGAACAAGAGGTTTGGGAAAGAGACTCGAGTATTTCATCGCACTTTGTGAATAACATTAGGAAAGTTGTTGAAGTTGATAAAGGAAAAGAGATTCCTCCAAAACTATTTATTCTCGTTAATTCTAGTAGTTCTTTTAGAGCGAGTTCTACGGCATCATGTCTTCATAATCCAACAGTTGTCACAAAACCTTTGAGAGCAAGTATGCTTGCGGCTTCACTACAAAGAGCAATGGGTGTTGGGAACAAAGGGAATCCTCGAAACGGAGAACATCAGGGTTTGTCTCTCAAGCATCTTCTCTCTGGGAGAAAGATTCTTATTGTAGATGATAATAGTGTGAATCGCACGGTAGCAGCTGGTGCTTTGAAAAAATATGGAGCTGGTGTGGTTTGTGTAAGCAGTGGAATAGAAGCCATCACTATGCTGAGGCCACCCCATCAATTTGATGCATGTTTCATGGATATTCAAATGCCTGAAATGGATGGGTTTGAAGCTACGCGTCGAATTCGAGAGATCGAAAACAATGTGAAAGACAGAGAACTGTTTGTTCATCTACCCATTTTGGCTATGACCGCAGACGTGATGCAGGCTACACACCAGGAATGCTCTAAGTGTGGGATGGATGGATATGTTTCAAAACCATTTGAAGCTGAACAACTTTATAGAGAGGTTTCAAAGTTTTTCCAATCATCTTGA

Protein sequence

>Msa1170800

RFKQKPPFPRLATGTSIGILVIALLVGHICHATVSRIAKVEDDYQEMMVLKKRAEAADVAKSQFLATVSHEIRTPMNGVLGMMNMLMDTDLDVTQQEYVRTAQGSGKALVSIINEVLDQAKIESGKIELEAVLFDIRAIMDDVLSLFSEKSQGKGVEALRVWFYSFLGAKLAVYVSDQVPQQLIGDPGRFRQIITNLMGNSIKFTDKGHIFVTIHLVEEVFHSIEVERESTSKDAEHTLSGFPVADGRRSWEGFRAFSHEGPLGSFSSTSSNDLISLIVSVEDTGDGIPLESQPMIFTPFMQVGPSISRKHGGTGIGLSISKCLVGLMNGEIGFVSEPKIGSTFTFTAVFTNACPNSNELQTQQINNQPHPATSEFNGMAALVIDPRPVRAEVSRYHIQRLGVRVEIVSDLKQGLSTVTDGDASINMVLIEQEVWERDSSISSHFVNNIRKVVEVDKGKEIPPKLFILVNSSSSFRASSTASCLHNPTVVTKPLRASMLAASLQRAMGVGNKGNPRNGEHQGLSLKHLLSGRKILIVDDNSVNRTVAAGALKKYGAGVVCVSSGIEAITMLRPPHQFDACFMDIQMPEMDGFEATRRIREIENNVKDRELFVHLPILAMTADVMQATHQECSKCGMDGYVSKPFEAEQLYREVSKFFQSS*