Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0856850 | XP_003616407.1 | 99.346 | 153 | 1 | 0 | 1 | 153 | 1 | 153 | 5.94e-108 | 314 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0856850 | sp|Q9M2T2|PP16A_ARATH | 49.351 | 154 | 76 | 2 | 1 | 152 | 1 | 154 | 4.97e-51 | 162 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0856850 | G7KBR2 | 99.346 | 153 | 1 | 0 | 1 | 153 | 1 | 153 | 2.84e-108 | 314 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0737480 | Msa0856850 | 0.808374 | 3.196536e-50 | -8.615850e-47 |
| Msa0816660 | Msa0856850 | 0.803955 | 2.723183e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0856850 | MtrunA17_Chr5g0435251 | 99.346 | 153 | 1 | 0 | 1 | 153 | 1 | 153 | 5.46e-112 | 314 |
| Msa0856850 | MtrunA17_Chr5g0435261 | 59.615 | 156 | 60 | 3 | 1 | 153 | 1 | 156 | 6.96e-57 | 175 |
| Msa0856850 | MtrunA17_Chr8g0350031 | 40.645 | 155 | 77 | 4 | 1 | 151 | 1 | 144 | 1.05e-36 | 123 |
| Msa0856850 | MtrunA17_Chr8g0350021 | 41.290 | 155 | 76 | 5 | 1 | 151 | 1 | 144 | 2.96e-36 | 122 |
| Msa0856850 | MtrunA17_Chr8g0348941 | 34.043 | 141 | 92 | 1 | 1 | 140 | 1 | 141 | 4.80e-24 | 92.4 |
| Msa0856850 | MtrunA17_Chr1g0147471 | 52.857 | 70 | 28 | 2 | 25 | 94 | 1 | 65 | 1.98e-19 | 77.0 |
| Msa0856850 | MtrunA17_Chr7g0246521 | 49.123 | 57 | 25 | 1 | 25 | 81 | 1 | 53 | 1.35e-13 | 62.0 |
| Msa0856850 | MtrunA17_Chr5g0393481 | 28.571 | 105 | 71 | 1 | 6 | 110 | 15 | 115 | 1.65e-12 | 62.8 |
| Msa0856850 | MtrunA17_Chr5g0393541 | 25.385 | 130 | 86 | 2 | 6 | 135 | 11 | 129 | 3.14e-11 | 59.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0856850 | AT3G55470.2 | 49.020 | 153 | 77 | 1 | 1 | 152 | 1 | 153 | 2.17e-53 | 166 |
| Msa0856850 | AT3G55470.1 | 49.351 | 154 | 76 | 2 | 1 | 152 | 1 | 154 | 5.05e-52 | 162 |
| Msa0856850 | AT1G63220.1 | 39.355 | 155 | 80 | 4 | 1 | 152 | 1 | 144 | 1.89e-29 | 105 |
| Msa0856850 | AT4G00467.2 | 35.036 | 137 | 81 | 3 | 1 | 133 | 1 | 133 | 4.41e-23 | 90.1 |
| Msa0856850 | AT4G00467.1 | 35.036 | 137 | 81 | 3 | 1 | 133 | 1 | 133 | 7.08e-23 | 90.1 |
| Msa0856850 | AT1G63220.2 | 34.839 | 155 | 73 | 5 | 1 | 152 | 1 | 130 | 4.08e-20 | 80.9 |
| Msa0856850 | AT4G34150.1 | 33.333 | 96 | 60 | 2 | 5 | 100 | 11 | 102 | 1.61e-13 | 66.2 |
| Msa0856850 | AT3G07940.1 | 34.021 | 97 | 58 | 3 | 3 | 99 | 228 | 318 | 3.91e-11 | 60.1 |
Find 45 sgRNAs with CRISPR-Local
Find 188 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGGGTTCATGGAGGTGCTTC+TGG | 0.298453 | 5_4:+51837889 | Msa0856850:CDS |
| TTTGGTTTGGTTTGTATAGA+AGG | 0.304188 | 5_4:-51837759 | None:intergenic |
| CTTCAAGAAACTGATATCTT+TGG | 0.340260 | 5_4:+51837926 | Msa0856850:CDS |
| TTGTATTGTAACAGAACATA+TGG | 0.340820 | 5_4:-51838149 | None:intergenic |
| TGTGCAGCAGATGTTGGATT+TGG | 0.368156 | 5_4:+51840575 | Msa0856850:three_prime_UTR |
| AATCAGAAAATGATAGTTTC+AGG | 0.375402 | 5_4:-51840794 | None:intergenic |
| AGAGATGACAATTGGGTTCA+TGG | 0.375670 | 5_4:+51837877 | Msa0856850:exon |
| AAAGAGAAGTTACTTTGGTT+TGG | 0.376114 | 5_4:-51837772 | None:intergenic |
| GAATTTGAAATCTCTTCTAA+TGG | 0.386320 | 5_4:+51840645 | Msa0856850:three_prime_UTR |
| AATCTATGTAAAGGATCTAT+TGG | 0.391697 | 5_4:+51840050 | Msa0856850:CDS |
| TTAATCATATGAGCATTAAC+TGG | 0.403333 | 5_4:+51840750 | Msa0856850:three_prime_UTR |
| CACAAGAGCAGTGTAGTTCA+TGG | 0.424916 | 5_4:+51838182 | Msa0856850:CDS |
| TTGTATTGGTCACCTGATCC+AGG | 0.448750 | 5_4:-51839556 | None:intergenic |
| AAATGAAAGAGAAGTTACTT+TGG | 0.452590 | 5_4:-51837777 | None:intergenic |
| CAAGCTCAATCTTAAAATCA+TGG | 0.468524 | 5_4:+51839576 | Msa0856850:CDS |
| GTTCATTGTGCAGCAGATGT+TGG | 0.502514 | 5_4:+51840569 | Msa0856850:exon |
| ATGTTCTGTTACAATACAAA+AGG | 0.505976 | 5_4:+51838153 | Msa0856850:CDS |
| AGAGTGGAATACCCTGGATC+AGG | 0.509095 | 5_4:+51839544 | Msa0856850:CDS |
| TTCACCGCAATAAGAATTGT+CGG | 0.511915 | 5_4:-51840133 | None:intergenic |
| TATTGCGGTGAACTCGAAGT+TGG | 0.529111 | 5_4:+51840144 | Msa0856850:CDS |
| ACAAATTTCTCATTCCATAC+CGG | 0.530096 | 5_4:-51839517 | None:intergenic |
| TTTGAAATCTCTTCTAATGG+TGG | 0.534629 | 5_4:+51840648 | Msa0856850:three_prime_UTR |
| TTGGCAGAAGGAGCAGAGAA+TGG | 0.534847 | 5_4:+51840069 | Msa0856850:CDS |
| CTCTCTTTCTCTCTCAGCGG+TGG | 0.535491 | 5_4:-51837805 | None:intergenic |
| GTGCTTCTGGTGAAAGCAAA+GGG | 0.538178 | 5_4:+51837902 | Msa0856850:CDS |
| CGTGTCCAGAATCTATGTAA+AGG | 0.538764 | 5_4:+51840041 | Msa0856850:intron |
| GAATATACTGACGATGACAT+TGG | 0.554722 | 5_4:+51840522 | Msa0856850:CDS |
| CAATCTTAAAATCATGGACA+AGG | 0.579708 | 5_4:+51839582 | Msa0856850:CDS |
| CGATGACATTGGAGGATGGA+GGG | 0.582080 | 5_4:+51840533 | Msa0856850:CDS |
| TGAGAAATTTGTATTCAGAG+TGG | 0.587344 | 5_4:+51839528 | Msa0856850:CDS |
| TGGTATAACTTACACTCGAA+AGG | 0.597779 | 5_4:+51840164 | Msa0856850:CDS |
| GGTGCTTCTGGTGAAAGCAA+AGG | 0.600631 | 5_4:+51837901 | Msa0856850:CDS |
| CGAGCCGACAATTCTTATTG+CGG | 0.603237 | 5_4:+51840129 | Msa0856850:CDS |
| AGCAGATGTTGGATTTGGAA+TGG | 0.606800 | 5_4:+51840580 | Msa0856850:three_prime_UTR |
| GGCCTGACCAACAAAATCAT+CGG | 0.607539 | 5_4:-51839617 | None:intergenic |
| GTAAAGGATCTATTGGCAGA+AGG | 0.610328 | 5_4:+51840057 | Msa0856850:CDS |
| TGTATTGGTCACCTGATCCA+GGG | 0.614439 | 5_4:-51839555 | None:intergenic |
| ACGATGACATTGGAGGATGG+AGG | 0.616751 | 5_4:+51840532 | Msa0856850:CDS |
| GTATTCAGAGTGGAATACCC+TGG | 0.618075 | 5_4:+51839538 | Msa0856850:CDS |
| CTGACGATGACATTGGAGGA+TGG | 0.621959 | 5_4:+51840529 | Msa0856850:CDS |
| CGAACCACACTATACTTGCG+AGG | 0.665447 | 5_4:-51840108 | None:intergenic |
| TCGTCCTCGCAAGTATAGTG+TGG | 0.665568 | 5_4:+51840104 | Msa0856850:CDS |
| TATACTGACGATGACATTGG+AGG | 0.665915 | 5_4:+51840525 | Msa0856850:CDS |
| TATCTCTCTTTCTCTCTCAG+CGG | 0.695243 | 5_4:-51837808 | None:intergenic |
| GATGACAATTGGGTTCATGG+AGG | 0.736317 | 5_4:+51837880 | Msa0856850:exon |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TAAAAATGTTTTTTTTTTCT+TGG | + | chr5_4:51838027-51838046 | Msa0856850:intron | 10.0% |
| !! | TAATTGTAAAATCATAAATA+GGG | - | chr5_4:51840286-51840305 | None:intergenic | 10.0% |
| !! | ATAATTGTAAAATCATAAAT+AGG | - | chr5_4:51840287-51840306 | None:intergenic | 10.0% |
| !!! | TTAGCATTTGAATTTTTTTA+TGG | - | chr5_4:51839410-51839429 | None:intergenic | 15.0% |
| !! | AGTTTATGTAAATATTTGTT+TGG | + | chr5_4:51840819-51840838 | Msa0856850:intron | 15.0% |
| !! | TTTCTTTCAGTAATTTATAA+TGG | + | chr5_4:51840940-51840959 | Msa0856850:intron | 15.0% |
| !! | TAATTTATAATGGTAAACTT+TGG | + | chr5_4:51840950-51840969 | Msa0856850:intron | 15.0% |
| !!! | AGAAAAATGTTTTAAATCTG+AGG | - | chr5_4:51838002-51838021 | None:intergenic | 20.0% |
| !!! | CATTGATTAAGTTTTATAAG+CGG | + | chr5_4:51838582-51838601 | Msa0856850:intron | 20.0% |
| !!! | ATTTCTTTTTTGATTTCTTG+TGG | + | chr5_4:51838841-51838860 | Msa0856850:intron | 20.0% |
| !!! | TTAAGGAATTAAACATTTTG+TGG | + | chr5_4:51838909-51838928 | Msa0856850:intron | 20.0% |
| !!! | TTGTAGTGAAATTTTATCTA+AGG | - | chr5_4:51839438-51839457 | None:intergenic | 20.0% |
| !!! | TTTTTTTTTCTTTGCTTAAC+TGG | + | chr5_4:51839463-51839482 | Msa0856850:intron | 20.0% |
| !! | TGTAATTGACAATGAAATTT+AGG | - | chr5_4:51840414-51840433 | None:intergenic | 20.0% |
| !! | AATTTCATTGTCAATTACAT+TGG | + | chr5_4:51840415-51840434 | Msa0856850:intron | 20.0% |
| !! | ATTTGTTTGGTACAATATAA+TGG | + | chr5_4:51840832-51840851 | Msa0856850:intron | 20.0% |
| !! | TACAATATAATGGTAAACTT+TGG | + | chr5_4:51840842-51840861 | Msa0856850:intron | 20.0% |
| !! | ACACGTTTTTGTCATATTAT+CGG | + | chr5_4:51837702-51837721 | Msa0856850:five_prime_UTR | 25.0% |
| ! | AAATGAAAGAGAAGTTACTT+TGG | - | chr5_4:51837780-51837799 | None:intergenic | 25.0% |
| !! | TTTTCAACTTGCATGTAAAT+CGG | - | chr5_4:51838075-51838094 | None:intergenic | 25.0% |
| ! | TTGTATTGTAACAGAACATA+TGG | - | chr5_4:51838152-51838171 | None:intergenic | 25.0% |
| ! | ATGTTCTGTTACAATACAAA+AGG | + | chr5_4:51838153-51838172 | Msa0856850:CDS | 25.0% |
| ! | ATTGAATGTAATCACACATT+AGG | + | chr5_4:51838444-51838463 | Msa0856850:intron | 25.0% |
| ! | TTGAATGTAATCACACATTA+GGG | + | chr5_4:51838445-51838464 | Msa0856850:intron | 25.0% |
| !!! | AGATTTGTTAGGTTTAATCT+AGG | + | chr5_4:51838767-51838786 | Msa0856850:intron | 25.0% |
| !!! | GATTTGTTAGGTTTAATCTA+GGG | + | chr5_4:51838768-51838787 | Msa0856850:intron | 25.0% |
| !! | ATTTGTTAGGTTTAATCTAG+GGG | + | chr5_4:51838769-51838788 | Msa0856850:intron | 25.0% |
| ! | AATCAAAAAAGAAATGCAGA+AGG | - | chr5_4:51838836-51838855 | None:intergenic | 25.0% |
| ! | AAATTGTTTCATTCATGAAC+AGG | - | chr5_4:51839043-51839062 | None:intergenic | 25.0% |
| ! | ATCCTTCAAATTACATATTG+TGG | - | chr5_4:51839302-51839321 | None:intergenic | 25.0% |
| !!! | TTTTAAGATTGAGCTTGTAT+TGG | - | chr5_4:51839573-51839592 | None:intergenic | 25.0% |
| !! | GCATTTTTGAATTGGTTAAT+CGG | - | chr5_4:51839704-51839723 | None:intergenic | 25.0% |
| !! | ATGAAACTGCATTTTTGAAT+TGG | - | chr5_4:51839712-51839731 | None:intergenic | 25.0% |
| !!! | ATTTTAATCAATCATGACTC+TGG | - | chr5_4:51839954-51839973 | None:intergenic | 25.0% |
| ! | TTGACCTGATAATTGATAAA+GGG | + | chr5_4:51840008-51840027 | Msa0856850:intron | 25.0% |
| ! | ATTACCCTTTATCAATTATC+AGG | - | chr5_4:51840015-51840034 | None:intergenic | 25.0% |
| ! | AATCTATGTAAAGGATCTAT+TGG | + | chr5_4:51840050-51840069 | Msa0856850:CDS | 25.0% |
| ! | TTATGATATGTATGCATTCA+CGG | + | chr5_4:51840349-51840368 | Msa0856850:intron | 25.0% |
| ! | TACTAAACATAAGTTTGGTT+TGG | - | chr5_4:51840465-51840484 | None:intergenic | 25.0% |
| ! | GACAATACTAAACATAAGTT+TGG | - | chr5_4:51840470-51840489 | None:intergenic | 25.0% |
| !! | GAATTTGAAATCTCTTCTAA+TGG | + | chr5_4:51840645-51840664 | Msa0856850:three_prime_UTR | 25.0% |
| ! | TTAATCATATGAGCATTAAC+TGG | + | chr5_4:51840750-51840769 | Msa0856850:three_prime_UTR | 25.0% |
| ! | AATCAGAAAATGATAGTTTC+AGG | - | chr5_4:51840797-51840816 | None:intergenic | 25.0% |
| !! | TGAAACTATCATTTTCTGAT+TGG | + | chr5_4:51840796-51840815 | Msa0856850:three_prime_UTR | 25.0% |
| ! | CTCTCAGTAATTTATATTCT+TGG | + | chr5_4:51840891-51840910 | Msa0856850:intron | 25.0% |
| !! | TTTGGTTTGGTTTGTATAGA+AGG | - | chr5_4:51837762-51837781 | None:intergenic | 30.0% |
| ! | AAAGAGAAGTTACTTTGGTT+TGG | - | chr5_4:51837775-51837794 | None:intergenic | 30.0% |
| CTTCAAGAAACTGATATCTT+TGG | + | chr5_4:51837926-51837945 | Msa0856850:CDS | 30.0% | |
| !! | GACATGAAATGTTCACTTTT+TGG | + | chr5_4:51838247-51838266 | Msa0856850:intron | 30.0% |
| TTTGTGTGTGTTTGTGTTTA+TGG | + | chr5_4:51838272-51838291 | Msa0856850:intron | 30.0% | |
| TGGTATCTTAAACCTTTGTT+AGG | + | chr5_4:51838292-51838311 | Msa0856850:intron | 30.0% | |
| ATCTTTATCTCTCCTAACAA+AGG | - | chr5_4:51838307-51838326 | None:intergenic | 30.0% | |
| TGTTTCATAGTACAAACACA+AGG | - | chr5_4:51838358-51838377 | None:intergenic | 30.0% | |
| TTATGTAGTTCATGATTCGA+CGG | + | chr5_4:51838615-51838634 | Msa0856850:intron | 30.0% | |
| TGAAAGAGTGAAAGTGAAAT+AGG | + | chr5_4:51838741-51838760 | Msa0856850:intron | 30.0% | |
| ! | GAAATAGGAAGAGATTTGTT+AGG | + | chr5_4:51838756-51838775 | Msa0856850:intron | 30.0% |
| TTTGTTAGGTTTAATCTAGG+GGG | + | chr5_4:51838770-51838789 | Msa0856850:intron | 30.0% | |
| !!! | TCTTTTTTGATTTCTTGTGG+AGG | + | chr5_4:51838844-51838863 | Msa0856850:intron | 30.0% |
| ! | GGAATTAAACATTTTGTGGT+TGG | + | chr5_4:51838913-51838932 | Msa0856850:intron | 30.0% |
| AATGAGACTATCACACAAAA+GGG | + | chr5_4:51838966-51838985 | Msa0856850:intron | 30.0% | |
| TTGAATGTATCCACATACAT+CGG | + | chr5_4:51839213-51839232 | Msa0856850:intron | 30.0% | |
| CTCCACAATATGTAATTTGA+AGG | + | chr5_4:51839297-51839316 | Msa0856850:intron | 30.0% | |
| TCAAAGTTACATACATGCAA+TGG | + | chr5_4:51839321-51839340 | Msa0856850:intron | 30.0% | |
| !!! | AAGCAGACGTTTATTTTTAC+TGG | - | chr5_4:51839348-51839367 | None:intergenic | 30.0% |
| GCTAGTATATTTATCAACAG+TGG | + | chr5_4:51839372-51839391 | Msa0856850:intron | 30.0% | |
| ACAAATTTCTCATTCCATAC+CGG | - | chr5_4:51839520-51839539 | None:intergenic | 30.0% | |
| TGAGAAATTTGTATTCAGAG+TGG | + | chr5_4:51839528-51839547 | Msa0856850:CDS | 30.0% | |
| CAAGCTCAATCTTAAAATCA+TGG | + | chr5_4:51839576-51839595 | Msa0856850:CDS | 30.0% | |
| CAATCTTAAAATCATGGACA+AGG | + | chr5_4:51839582-51839601 | Msa0856850:CDS | 30.0% | |
| ! | TTTTCTTCCGATGATTTTGT+TGG | + | chr5_4:51839610-51839629 | Msa0856850:CDS | 30.0% |
| ! | ATGACTGATGCAATTAGTTT+AGG | - | chr5_4:51839663-51839682 | None:intergenic | 30.0% |
| ! | TATTTTTCGTGATCTGTGAT+TGG | + | chr5_4:51839871-51839890 | Msa0856850:intron | 30.0% |
| AACACTGCATCTATGAATAA+GGG | + | chr5_4:51839895-51839914 | Msa0856850:intron | 30.0% | |
| ACAAAAAACCCTAAATGAGT+AGG | + | chr5_4:51839920-51839939 | Msa0856850:intron | 30.0% | |
| TGTAATGTCCTACTCATTTA+GGG | - | chr5_4:51839931-51839950 | None:intergenic | 30.0% | |
| CTTGACCTGATAATTGATAA+AGG | + | chr5_4:51840007-51840026 | Msa0856850:intron | 30.0% | |
| TAGATCCTTTACATAGATTC+TGG | - | chr5_4:51840049-51840068 | None:intergenic | 30.0% | |
| !! | TTACTTGTTATGCAAACCAT+TGG | + | chr5_4:51840224-51840243 | Msa0856850:intron | 30.0% |
| !!! | GAAAGTCACATTTTTTCCAA+TGG | - | chr5_4:51840243-51840262 | None:intergenic | 30.0% |
| ATGTTCTTGAAATTCATCAC+AGG | + | chr5_4:51840494-51840513 | Msa0856850:intron | 30.0% | |
| ! | TTTGAAATCTCTTCTAATGG+TGG | + | chr5_4:51840648-51840667 | Msa0856850:three_prime_UTR | 30.0% |
| !! | CTTTGGAATCATCTATGTAA+TGG | + | chr5_4:51840859-51840878 | Msa0856850:intron | 30.0% |
| !!! | TTTTTTGTTGATAGCTCGCA+TGG | + | chr5_4:51838124-51838143 | Msa0856850:intron | 35.0% |
| ATGATTCGACGGAGTTAAAT+TGG | + | chr5_4:51838626-51838645 | Msa0856850:intron | 35.0% | |
| AGTAAGTTAATCTTCCCTGA+CGG | + | chr5_4:51838657-51838676 | Msa0856850:intron | 35.0% | |
| !!! | TTTTTGATTTCTTGTGGAGG+AGG | + | chr5_4:51838847-51838866 | Msa0856850:intron | 35.0% |
| !!! | TTTTGATTTCTTGTGGAGGA+GGG | + | chr5_4:51838848-51838867 | Msa0856850:intron | 35.0% |
| CAATGAGACTATCACACAAA+AGG | + | chr5_4:51838965-51838984 | Msa0856850:intron | 35.0% | |
| TTTATCCATGTGTGACAACT+GGG | - | chr5_4:51838996-51839015 | None:intergenic | 35.0% | |
| ATTTATCCATGTGTGACAAC+TGG | - | chr5_4:51838997-51839016 | None:intergenic | 35.0% | |
| CCACTTCATAATGAAATGTG+TGG | - | chr5_4:51839020-51839039 | None:intergenic | 35.0% | |
| CCACACATTTCATTATGAAG+TGG | + | chr5_4:51839017-51839036 | Msa0856850:intron | 35.0% | |
| !! | TTGAAAAAGTGGACTACACA+CGG | - | chr5_4:51839082-51839101 | None:intergenic | 35.0% |
| TTCACATCTCCTTGAAAAAG+TGG | - | chr5_4:51839093-51839112 | None:intergenic | 35.0% | |
| ! | TGTTTTGTCAGTGCTTCATA+AGG | - | chr5_4:51839135-51839154 | None:intergenic | 35.0% |
| TAATATGACACCGATGTATG+TGG | - | chr5_4:51839226-51839245 | None:intergenic | 35.0% | |
| AGTTGGAAAAGGAAGAAGAA+AGG | - | chr5_4:51839276-51839295 | None:intergenic | 35.0% | |
| ATTACATATTGTGGAGCAGT+TGG | - | chr5_4:51839293-51839312 | None:intergenic | 35.0% | |
| GAAGCAATTGAAGTCTTACA+CGG | - | chr5_4:51839641-51839660 | None:intergenic | 35.0% | |
| CAACACTGCATCTATGAATA+AGG | + | chr5_4:51839894-51839913 | Msa0856850:intron | 35.0% | |
| GTGTAATGTCCTACTCATTT+AGG | - | chr5_4:51839932-51839951 | None:intergenic | 35.0% | |
| TTTACATAGATTCTGGACAC+GGG | - | chr5_4:51840042-51840061 | None:intergenic | 35.0% | |
| CTTTACATAGATTCTGGACA+CGG | - | chr5_4:51840043-51840062 | None:intergenic | 35.0% | |
| TTCACCGCAATAAGAATTGT+CGG | - | chr5_4:51840136-51840155 | None:intergenic | 35.0% | |
| TGGTATAACTTACACTCGAA+AGG | + | chr5_4:51840164-51840183 | Msa0856850:CDS | 35.0% | |
| ! | TCATACACTACATACTGACT+AGG | - | chr5_4:51840324-51840343 | None:intergenic | 35.0% |
| GAATATACTGACGATGACAT+TGG | + | chr5_4:51840522-51840541 | Msa0856850:CDS | 35.0% | |
| ! | CATGTTCCAAAGTTTCAAGT+TGG | - | chr5_4:51840918-51840937 | None:intergenic | 35.0% |
| TATCTCTCTTTCTCTCTCAG+CGG | - | chr5_4:51837811-51837830 | None:intergenic | 40.0% | |
| AGAGAGAGAGAGATGACAAT+TGG | + | chr5_4:51837869-51837888 | Msa0856850:exon | 40.0% | |
| GAGAGAGAGAGATGACAATT+GGG | + | chr5_4:51837870-51837889 | Msa0856850:exon | 40.0% | |
| AGAGATGACAATTGGGTTCA+TGG | + | chr5_4:51837877-51837896 | Msa0856850:exon | 40.0% | |
| TTTGTGAGAGAAGGAGGAAA+AGG | - | chr5_4:51838213-51838232 | None:intergenic | 40.0% | |
| TGTGTGAACTTTGTGAGAGA+AGG | - | chr5_4:51838222-51838241 | None:intergenic | 40.0% | |
| TGAAACAAAGACATCCGACA+CGG | + | chr5_4:51838371-51838390 | Msa0856850:intron | 40.0% | |
| GTTGTGTTAGTGTTCGACAT+CGG | + | chr5_4:51838467-51838486 | Msa0856850:intron | 40.0% | |
| CACTTTCAATGTAACGTCGA+AGG | + | chr5_4:51838508-51838527 | Msa0856850:intron | 40.0% | |
| TTTCAATGTAACGTCGAAGG+CGG | + | chr5_4:51838511-51838530 | Msa0856850:intron | 40.0% | |
| GTAAGTTAATCTTCCCTGAC+GGG | + | chr5_4:51838658-51838677 | Msa0856850:intron | 40.0% | |
| CACTCTTTCAGTATCACAAC+AGG | - | chr5_4:51838731-51838750 | None:intergenic | 40.0% | |
| ! | TTTGATTTCTTGTGGAGGAG+GGG | + | chr5_4:51838849-51838868 | Msa0856850:intron | 40.0% |
| TTATCCATGTGTGACAACTG+GGG | - | chr5_4:51838995-51839014 | None:intergenic | 40.0% | |
| !! | TGAAAAAGTGGACTACACAC+GGG | - | chr5_4:51839081-51839100 | None:intergenic | 40.0% |
| !!! | GTGTGTAGTCCACTTTTTCA+AGG | + | chr5_4:51839081-51839100 | Msa0856850:intron | 40.0% |
| GTGTCATATTAGTGTCTGAC+CGG | + | chr5_4:51839235-51839254 | Msa0856850:intron | 40.0% | |
| TATTGTGGAGCAGTTGGAAA+AGG | - | chr5_4:51839287-51839306 | None:intergenic | 40.0% | |
| TGGTGTATTGAATGATGCAG+AGG | + | chr5_4:51839483-51839502 | Msa0856850:intron | 40.0% | |
| GGTGTATTGAATGATGCAGA+GGG | + | chr5_4:51839484-51839503 | Msa0856850:intron | 40.0% | |
| GTGTATTGAATGATGCAGAG+GGG | + | chr5_4:51839485-51839504 | Msa0856850:intron | 40.0% | |
| TGTATTGAATGATGCAGAGG+GGG | + | chr5_4:51839486-51839505 | Msa0856850:intron | 40.0% | |
| ! | TTCCGATGATTTTGTTGGTC+AGG | + | chr5_4:51839615-51839634 | Msa0856850:CDS | 40.0% |
| CTATTCAACAAGCGTATAGC+TGG | - | chr5_4:51839802-51839821 | None:intergenic | 40.0% | |
| CGTGTCCAGAATCTATGTAA+AGG | + | chr5_4:51840041-51840060 | Msa0856850:intron | 40.0% | |
| GTAAAGGATCTATTGGCAGA+AGG | + | chr5_4:51840057-51840076 | Msa0856850:CDS | 40.0% | |
| TGATATGTATGCATTCACGG+TGG | + | chr5_4:51840352-51840371 | Msa0856850:intron | 40.0% | |
| GATATGTATGCATTCACGGT+GGG | + | chr5_4:51840353-51840372 | Msa0856850:intron | 40.0% | |
| ATATGTATGCATTCACGGTG+GGG | + | chr5_4:51840354-51840373 | Msa0856850:intron | 40.0% | |
| TATACTGACGATGACATTGG+AGG | + | chr5_4:51840525-51840544 | Msa0856850:CDS | 40.0% | |
| AGCAGATGTTGGATTTGGAA+TGG | + | chr5_4:51840580-51840599 | Msa0856850:three_prime_UTR | 40.0% | |
| CTTGGACCAACTTGAAACTT+TGG | + | chr5_4:51840909-51840928 | Msa0856850:intron | 40.0% | |
| GATGACAATTGGGTTCATGG+AGG | + | chr5_4:51837880-51837899 | Msa0856850:exon | 45.0% | |
| GTGCTTCTGGTGAAAGCAAA+GGG | + | chr5_4:51837902-51837921 | Msa0856850:CDS | 45.0% | |
| CACAAGAGCAGTGTAGTTCA+TGG | + | chr5_4:51838182-51838201 | Msa0856850:CDS | 45.0% | |
| GTGAACTTTGTGAGAGAAGG+AGG | - | chr5_4:51838219-51838238 | None:intergenic | 45.0% | |
| TGTCAGTGTCAATACCGTGT+CGG | - | chr5_4:51838388-51838407 | None:intergenic | 45.0% | |
| TTGATTTCTTGTGGAGGAGG+GGG | + | chr5_4:51838850-51838869 | Msa0856850:intron | 45.0% | |
| TGATGAGAGTCACTCGTGTT+TGG | - | chr5_4:51839158-51839177 | None:intergenic | 45.0% | |
| AAGGAACACCTATGTAGCAC+CGG | - | chr5_4:51839257-51839276 | None:intergenic | 45.0% | |
| GTATTGAATGATGCAGAGGG+GGG | + | chr5_4:51839487-51839506 | Msa0856850:intron | 45.0% | |
| GTATTCAGAGTGGAATACCC+TGG | + | chr5_4:51839538-51839557 | Msa0856850:CDS | 45.0% | |
| ! | TGTATTGGTCACCTGATCCA+GGG | - | chr5_4:51839558-51839577 | None:intergenic | 45.0% |
| ! | TTGTATTGGTCACCTGATCC+AGG | - | chr5_4:51839559-51839578 | None:intergenic | 45.0% |
| GGCCTGACCAACAAAATCAT+CGG | - | chr5_4:51839620-51839639 | None:intergenic | 45.0% | |
| CGAGCCGACAATTCTTATTG+CGG | + | chr5_4:51840129-51840148 | Msa0856850:CDS | 45.0% | |
| TATTGCGGTGAACTCGAAGT+TGG | + | chr5_4:51840144-51840163 | Msa0856850:CDS | 45.0% | |
| TATGTATGCATTCACGGTGG+GGG | + | chr5_4:51840355-51840374 | Msa0856850:intron | 45.0% | |
| GTTCATTGTGCAGCAGATGT+TGG | + | chr5_4:51840569-51840588 | Msa0856850:exon | 45.0% | |
| TGTGCAGCAGATGTTGGATT+TGG | + | chr5_4:51840575-51840594 | Msa0856850:three_prime_UTR | 45.0% | |
| !!! | AACTATTTTTTTATTTATTA+AGG | + | chr5_4:51838892-51838911 | Msa0856850:intron | 5.0% |
| GGTGCTTCTGGTGAAAGCAA+AGG | + | chr5_4:51837901-51837920 | Msa0856850:CDS | 50.0% | |
| TAGTGTTCGACATCGGCACA+TGG | + | chr5_4:51838474-51838493 | Msa0856850:intron | 50.0% | |
| AGTGTTCGACATCGGCACAT+GGG | + | chr5_4:51838475-51838494 | Msa0856850:intron | 50.0% | |
| ! | AATCTTCCCTGACGGGTACA+CGG | + | chr5_4:51838665-51838684 | Msa0856850:intron | 50.0% |
| ACTAATCCGTGTACCCGTCA+GGG | - | chr5_4:51838674-51838693 | None:intergenic | 50.0% | |
| TACTAATCCGTGTACCCGTC+AGG | - | chr5_4:51838675-51838694 | None:intergenic | 50.0% | |
| GGATGCAGTTCATCTGTGAG+TGG | + | chr5_4:51838791-51838810 | Msa0856850:intron | 50.0% | |
| TGATTTCTTGTGGAGGAGGG+GGG | + | chr5_4:51838851-51838870 | Msa0856850:intron | 50.0% | |
| GTTACCCCAGTTGTCACACA+TGG | + | chr5_4:51838988-51839007 | Msa0856850:intron | 50.0% | |
| !! | AAAGTGGACTACACACGGGA+GGG | - | chr5_4:51839077-51839096 | None:intergenic | 50.0% |
| !! | AAAAGTGGACTACACACGGG+AGG | - | chr5_4:51839078-51839097 | None:intergenic | 50.0% |
| AGAGTGGAATACCCTGGATC+AGG | + | chr5_4:51839544-51839563 | Msa0856850:CDS | 50.0% | |
| TTGGCAGAAGGAGCAGAGAA+TGG | + | chr5_4:51840069-51840088 | Msa0856850:CDS | 50.0% | |
| TCGTCCTCGCAAGTATAGTG+TGG | + | chr5_4:51840104-51840123 | Msa0856850:CDS | 50.0% | |
| CGAACCACACTATACTTGCG+AGG | - | chr5_4:51840111-51840130 | None:intergenic | 50.0% | |
| CTGACGATGACATTGGAGGA+TGG | + | chr5_4:51840529-51840548 | Msa0856850:CDS | 50.0% | |
| ACGATGACATTGGAGGATGG+AGG | + | chr5_4:51840532-51840551 | Msa0856850:CDS | 50.0% | |
| CGATGACATTGGAGGATGGA+GGG | + | chr5_4:51840533-51840552 | Msa0856850:CDS | 50.0% | |
| CTCTCTTTCTCTCTCAGCGG+TGG | - | chr5_4:51837808-51837827 | None:intergenic | 55.0% | |
| !! | TGGGTTCATGGAGGTGCTTC+TGG | + | chr5_4:51837889-51837908 | Msa0856850:CDS | 55.0% |
| !! | AAGTGGACTACACACGGGAG+GGG | - | chr5_4:51839076-51839095 | None:intergenic | 55.0% |
| !! | GTGTCTGACCGGTGCTACAT+AGG | + | chr5_4:51839246-51839265 | Msa0856850:intron | 55.0% |
| !! | AGTGGACTACACACGGGAGG+GGG | - | chr5_4:51839075-51839094 | None:intergenic | 60.0% |
| ATGATGCAGAGGGGGGTAGC+AGG | + | chr5_4:51839494-51839513 | Msa0856850:intron | 60.0% | |
| CGTCGAAGGCGGCTGAAGTG+TGG | + | chr5_4:51838522-51838541 | Msa0856850:intron | 65.0% | |
| ! | GTGGACTACACACGGGAGGG+GGG | - | chr5_4:51839074-51839093 | None:intergenic | 65.0% |
| ! | TCACGGTGGGGGCGCATGTA+TGG | + | chr5_4:51840366-51840385 | Msa0856850:intron | 65.0% |
| TGCAGAGGGGGGTAGCAGGC+CGG | + | chr5_4:51839498-51839517 | Msa0856850:intron | 70.0% | |
| AGGGGGGTAGCAGGCCGGTA+TGG | + | chr5_4:51839503-51839522 | Msa0856850:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_4 | gene | 51837673 | 51840994 | 51837673 | ID=Msa0856850;Name=Msa0856850 |
| chr5_4 | mRNA | 51837673 | 51840994 | 51837673 | ID=Msa0856850-mRNA-1;Parent=Msa0856850;Name=Msa0856850-mRNA-1;_AED=0.26;_eAED=0.26;_QI=208|1|1|1|0.8|0.66|6|271|153 |
| chr5_4 | exon | 51837673 | 51837947 | 51837673 | ID=Msa0856850-mRNA-1:exon:16194;Parent=Msa0856850-mRNA-1 |
| chr5_4 | exon | 51838138 | 51838203 | 51838138 | ID=Msa0856850-mRNA-1:exon:16195;Parent=Msa0856850-mRNA-1 |
| chr5_4 | exon | 51839503 | 51839641 | 51839503 | ID=Msa0856850-mRNA-1:exon:16196;Parent=Msa0856850-mRNA-1 |
| chr5_4 | exon | 51840050 | 51840185 | 51840050 | ID=Msa0856850-mRNA-1:exon:16197;Parent=Msa0856850-mRNA-1 |
| chr5_4 | exon | 51840516 | 51840817 | 51840516 | ID=Msa0856850-mRNA-1:exon:16198;Parent=Msa0856850-mRNA-1 |
| chr5_4 | exon | 51840972 | 51840994 | 51840972 | ID=Msa0856850-mRNA-1:exon:16199;Parent=Msa0856850-mRNA-1 |
| chr5_4 | five_prime_UTR | 51837673 | 51837880 | 51837673 | ID=Msa0856850-mRNA-1:five_prime_utr;Parent=Msa0856850-mRNA-1 |
| chr5_4 | CDS | 51837881 | 51837947 | 51837881 | ID=Msa0856850-mRNA-1:cds;Parent=Msa0856850-mRNA-1 |
| chr5_4 | CDS | 51838138 | 51838203 | 51838138 | ID=Msa0856850-mRNA-1:cds;Parent=Msa0856850-mRNA-1 |
| chr5_4 | CDS | 51839503 | 51839641 | 51839503 | ID=Msa0856850-mRNA-1:cds;Parent=Msa0856850-mRNA-1 |
| chr5_4 | CDS | 51840050 | 51840185 | 51840050 | ID=Msa0856850-mRNA-1:cds;Parent=Msa0856850-mRNA-1 |
| chr5_4 | CDS | 51840516 | 51840569 | 51840516 | ID=Msa0856850-mRNA-1:cds;Parent=Msa0856850-mRNA-1 |
| chr5_4 | three_prime_UTR | 51840570 | 51840817 | 51840570 | ID=Msa0856850-mRNA-1:three_prime_utr;Parent=Msa0856850-mRNA-1 |
| chr5_4 | three_prime_UTR | 51840972 | 51840994 | 51840972 | ID=Msa0856850-mRNA-1:three_prime_utr;Parent=Msa0856850-mRNA-1 |
| Gene Sequence |
| Protein sequence |
