Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0816660 | XP_003616407.1 | 99.346 | 153 | 1 | 0 | 1 | 153 | 1 | 153 | 5.94e-108 | 314 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0816660 | sp|Q9M2T2|PP16A_ARATH | 49.351 | 154 | 76 | 2 | 1 | 152 | 1 | 154 | 4.97e-51 | 162 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0816660 | G7KBR2 | 99.346 | 153 | 1 | 0 | 1 | 153 | 1 | 153 | 2.84e-108 | 314 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0043500 | Msa0816660 | 0.803909 | 2.783673e-49 | -8.615850e-47 |
| Msa0043650 | Msa0816660 | 0.803812 | 2.914982e-49 | -8.615850e-47 |
| Msa0737480 | Msa0816660 | 0.944545 | 1.600054e-103 | -8.615850e-47 |
| Msa0741070 | Msa0816660 | 0.802367 | 5.801939e-49 | -8.615850e-47 |
| Msa0750810 | Msa0816660 | 0.804143 | 2.488291e-49 | -8.615850e-47 |
| Msa0779260 | Msa0816660 | 0.894087 | 3.429823e-75 | -8.615850e-47 |
| Msa0816660 | Msa0856850 | 0.803955 | 2.723183e-49 | -8.615850e-47 |
| Msa0816660 | Msa1389880 | 0.801565 | 8.481059e-49 | -8.615850e-47 |
| Msa0816660 | Msa1407190 | 0.826800 | 2.224102e-54 | -8.615850e-47 |
| Msa0816660 | Msa1432130 | 0.838243 | 3.227703e-57 | -8.615850e-47 |
| Msa0378970 | Msa0816660 | 0.810514 | 1.109898e-50 | -8.615850e-47 |
| Msa0474940 | Msa0816660 | 0.816287 | 5.978502e-52 | -8.615850e-47 |
| Msa0307310 | Msa0816660 | 0.801538 | 8.587657e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0816660 | MtrunA17_Chr5g0435251 | 99.346 | 153 | 1 | 0 | 1 | 153 | 1 | 153 | 5.46e-112 | 314 |
| Msa0816660 | MtrunA17_Chr5g0435261 | 59.615 | 156 | 60 | 3 | 1 | 153 | 1 | 156 | 6.96e-57 | 175 |
| Msa0816660 | MtrunA17_Chr8g0350031 | 40.645 | 155 | 77 | 4 | 1 | 151 | 1 | 144 | 1.05e-36 | 123 |
| Msa0816660 | MtrunA17_Chr8g0350021 | 41.290 | 155 | 76 | 5 | 1 | 151 | 1 | 144 | 2.96e-36 | 122 |
| Msa0816660 | MtrunA17_Chr8g0348941 | 34.043 | 141 | 92 | 1 | 1 | 140 | 1 | 141 | 4.80e-24 | 92.4 |
| Msa0816660 | MtrunA17_Chr1g0147471 | 52.857 | 70 | 28 | 2 | 25 | 94 | 1 | 65 | 1.98e-19 | 77.0 |
| Msa0816660 | MtrunA17_Chr7g0246521 | 49.123 | 57 | 25 | 1 | 25 | 81 | 1 | 53 | 1.35e-13 | 62.0 |
| Msa0816660 | MtrunA17_Chr5g0393481 | 28.571 | 105 | 71 | 1 | 6 | 110 | 15 | 115 | 1.65e-12 | 62.8 |
| Msa0816660 | MtrunA17_Chr5g0393541 | 25.385 | 130 | 86 | 2 | 6 | 135 | 11 | 129 | 3.14e-11 | 59.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0816660 | AT3G55470.2 | 49.020 | 153 | 77 | 1 | 1 | 152 | 1 | 153 | 2.17e-53 | 166 |
| Msa0816660 | AT3G55470.1 | 49.351 | 154 | 76 | 2 | 1 | 152 | 1 | 154 | 5.05e-52 | 162 |
| Msa0816660 | AT1G63220.1 | 39.355 | 155 | 80 | 4 | 1 | 152 | 1 | 144 | 1.89e-29 | 105 |
| Msa0816660 | AT4G00467.2 | 35.036 | 137 | 81 | 3 | 1 | 133 | 1 | 133 | 4.41e-23 | 90.1 |
| Msa0816660 | AT4G00467.1 | 35.036 | 137 | 81 | 3 | 1 | 133 | 1 | 133 | 7.08e-23 | 90.1 |
| Msa0816660 | AT1G63220.2 | 34.839 | 155 | 73 | 5 | 1 | 152 | 1 | 130 | 4.08e-20 | 80.9 |
| Msa0816660 | AT4G34150.1 | 33.333 | 96 | 60 | 2 | 5 | 100 | 11 | 102 | 1.61e-13 | 66.2 |
| Msa0816660 | AT3G07940.1 | 34.021 | 97 | 58 | 3 | 3 | 99 | 228 | 318 | 3.91e-11 | 60.1 |
Find 50 sgRNAs with CRISPR-Local
Find 179 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCTCTCAGTAATTTATATTT+TGG | 0.110164 | 5_3:+51163551 | Msa0816660:three_prime_UTR |
| ATTTGTTTGGTACAATATAA+TGG | 0.292889 | 5_3:+51163469 | Msa0816660:three_prime_UTR |
| TGGGTTCATGGAGGTGCTTC+TGG | 0.298453 | 5_3:+51160573 | Msa0816660:CDS |
| TTTGGTTTGGTTTGTATAGA+AGG | 0.304188 | 5_3:-51160384 | None:intergenic |
| AATCAGAAAACGATAGTTTC+AGG | 0.346385 | 5_3:-51163431 | None:intergenic |
| TGTGCAGCAGATGTAGGATT+TGG | 0.356276 | 5_3:+51163212 | Msa0816660:three_prime_UTR |
| CTTCAAGAGACTGATATCTT+TGG | 0.365687 | 5_3:+51160610 | Msa0816660:CDS |
| AGAGATGACAATTGGGTTCA+TGG | 0.375670 | 5_3:+51160561 | Msa0816660:exon |
| AAAGAGAAGTTACTTTGGTT+TGG | 0.376114 | 5_3:-51160397 | None:intergenic |
| AATCTATGTAAAGGATCTAT+TGG | 0.391697 | 5_3:+51162687 | Msa0816660:CDS |
| TTAATCATATGAGCATTAAC+TGG | 0.403333 | 5_3:+51163387 | Msa0816660:three_prime_UTR |
| AGTTTATGTAAATATTTGTT+TGG | 0.413140 | 5_3:+51163456 | Msa0816660:three_prime_UTR |
| ACAATATAATGGTGAAACTT+TGG | 0.414740 | 5_3:+51163480 | Msa0816660:three_prime_UTR |
| CACAAGAGCAGTGTAGTTCA+TGG | 0.424916 | 5_3:+51160839 | Msa0816660:CDS |
| TTTCAAATCTCTTCTAATGT+TGG | 0.443648 | 5_3:+51163285 | Msa0816660:three_prime_UTR |
| CTTTGAAATCATCTATGTAA+TGG | 0.444826 | 5_3:+51163520 | Msa0816660:intron |
| TTGTATTGGTCACCTGATCC+AGG | 0.448750 | 5_3:-51162194 | None:intergenic |
| AAATGAAAGAGAAGTTACTT+TGG | 0.464961 | 5_3:-51160402 | None:intergenic |
| CAAGCTCAATCTTAAAATCA+TGG | 0.468524 | 5_3:+51162214 | Msa0816660:CDS |
| TTCTTTGTTGATAGCTCGCA+TGG | 0.469488 | 5_3:+51160781 | Msa0816660:intron |
| GTTCATTGTGCAGCAGATGT+AGG | 0.496934 | 5_3:+51163206 | Msa0816660:exon |
| ATGTTCTCTTACAATACAAA+AGG | 0.507230 | 5_3:+51160810 | Msa0816660:CDS |
| AGAGTGGAATACCCTGGATC+AGG | 0.509095 | 5_3:+51162182 | Msa0816660:CDS |
| TTCACCGCAATAAGAATTGT+CGG | 0.511915 | 5_3:-51162770 | None:intergenic |
| CTCACTTTCTCTCTCAAAGG+TGG | 0.512907 | 5_3:-51160430 | None:intergenic |
| TTGTATTGTAAGAGAACATA+CGG | 0.514214 | 5_3:-51160806 | None:intergenic |
| TATTGCGGTGAACTCGAAGT+TGG | 0.529111 | 5_3:+51162781 | Msa0816660:CDS |
| ACAAATTTCTCATTCCATAC+CGG | 0.530096 | 5_3:-51162155 | None:intergenic |
| TCTCTCACTTTCTCTCTCAA+AGG | 0.530356 | 5_3:-51160433 | None:intergenic |
| TTGGCAGAAGGAGCAGAGAA+TGG | 0.534847 | 5_3:+51162706 | Msa0816660:CDS |
| GTGCTTCTGGTGAAAGCAAA+GGG | 0.538178 | 5_3:+51160586 | Msa0816660:CDS |
| CGTGTCCAGAATCTATGTAA+AGG | 0.538764 | 5_3:+51162678 | Msa0816660:intron |
| GAATATACTGACGATGACAT+TGG | 0.554722 | 5_3:+51163159 | Msa0816660:CDS |
| CAATCTTAAAATCATGGACA+AGG | 0.579708 | 5_3:+51162220 | Msa0816660:CDS |
| CGATGACATTGGAGGATGGA+GGG | 0.582080 | 5_3:+51163170 | Msa0816660:CDS |
| TGAGAAATTTGTATTCAGAG+TGG | 0.587344 | 5_3:+51162166 | Msa0816660:CDS |
| TGGTATAACTTACACTCGAA+AGG | 0.597779 | 5_3:+51162801 | Msa0816660:CDS |
| GGTGCTTCTGGTGAAAGCAA+AGG | 0.600631 | 5_3:+51160585 | Msa0816660:CDS |
| CGAGCCGACAATTCTTATTG+CGG | 0.603237 | 5_3:+51162766 | Msa0816660:CDS |
| GGCCTGACCAACAAAATCAT+CGG | 0.607539 | 5_3:-51162255 | None:intergenic |
| GTAAAGGATCTATTGGCAGA+AGG | 0.610328 | 5_3:+51162694 | Msa0816660:CDS |
| TGTATTGGTCACCTGATCCA+GGG | 0.614439 | 5_3:-51162193 | None:intergenic |
| AGCAGATGTAGGATTTGGAA+TGG | 0.615797 | 5_3:+51163217 | Msa0816660:three_prime_UTR |
| ACGATGACATTGGAGGATGG+AGG | 0.616751 | 5_3:+51163169 | Msa0816660:CDS |
| GTATTCAGAGTGGAATACCC+TGG | 0.618075 | 5_3:+51162176 | Msa0816660:CDS |
| CTGACGATGACATTGGAGGA+TGG | 0.621959 | 5_3:+51163166 | Msa0816660:CDS |
| CGAACCACACTATACTTGCG+AGG | 0.665447 | 5_3:-51162745 | None:intergenic |
| TCGTCCTCGCAAGTATAGTG+TGG | 0.665568 | 5_3:+51162741 | Msa0816660:CDS |
| TATACTGACGATGACATTGG+AGG | 0.665915 | 5_3:+51163162 | Msa0816660:CDS |
| GATGACAATTGGGTTCATGG+AGG | 0.736317 | 5_3:+51160564 | Msa0816660:exon |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAATTGTAAAATCATAAATA+GGG | - | chr5_3:51162923-51162942 | None:intergenic | 10.0% |
| !! | ATAATTGTAAAATCATAAAT+AGG | - | chr5_3:51162924-51162943 | None:intergenic | 10.0% |
| !! | AACATTGATAAAATTAGAAA+GGG | - | chr5_3:51160653-51160672 | None:intergenic | 15.0% |
| !! | AAACATTGATAAAATTAGAA+AGG | - | chr5_3:51160654-51160673 | None:intergenic | 15.0% |
| !!! | TTAGCATTTGAATTTTTTTA+TGG | - | chr5_3:51162045-51162064 | None:intergenic | 15.0% |
| !!! | TTTTTTTTTATTTGCTTAAC+TGG | + | chr5_3:51162101-51162120 | Msa0816660:intron | 15.0% |
| !! | AGTTTATGTAAATATTTGTT+TGG | + | chr5_3:51163456-51163475 | Msa0816660:three_prime_UTR | 15.0% |
| !! | TATGAAATAATGACAATCAA+CGG | - | chr5_3:51161222-51161241 | None:intergenic | 20.0% |
| !!! | CATAGATTAAATTTTGTAAG+TGG | + | chr5_3:51161238-51161257 | Msa0816660:intron | 20.0% |
| !!! | TTGTAGTGAAATTTTATCTA+AGG | - | chr5_3:51162073-51162092 | None:intergenic | 20.0% |
| !!! | AAAAGTCACATTTTTTACAA+TGG | - | chr5_3:51162880-51162899 | None:intergenic | 20.0% |
| !! | TGTAATTGACAATGAAAATT+AGG | - | chr5_3:51163051-51163070 | None:intergenic | 20.0% |
| !!! | ATTTTCATTGTCAATTACAT+TGG | + | chr5_3:51163052-51163071 | Msa0816660:intron | 20.0% |
| !! | GAAAATACTAAACATAAGTT+TGG | - | chr5_3:51163107-51163126 | None:intergenic | 20.0% |
| !! | ATTTGTTTGGTACAATATAA+TGG | + | chr5_3:51163469-51163488 | Msa0816660:three_prime_UTR | 20.0% |
| !! | ACACGTTTTTGTCATATTAT+CGG | + | chr5_3:51160330-51160349 | Msa0816660:five_prime_UTR | 25.0% |
| ! | AAATGAAAGAGAAGTTACTT+TGG | - | chr5_3:51160405-51160424 | None:intergenic | 25.0% |
| ! | TTGTATTGTAAGAGAACATA+CGG | - | chr5_3:51160809-51160828 | None:intergenic | 25.0% |
| ! | ATGTTCTCTTACAATACAAA+AGG | + | chr5_3:51160810-51160829 | Msa0816660:CDS | 25.0% |
| ! | TGATATTGAAAGAGTGAAAT+AGG | + | chr5_3:51161397-51161416 | Msa0816660:intron | 25.0% |
| !!! | AGATTTGTTAGGTTTAATCT+AGG | + | chr5_3:51161423-51161442 | Msa0816660:intron | 25.0% |
| !!! | GATTTGTTAGGTTTAATCTA+GGG | + | chr5_3:51161424-51161443 | Msa0816660:intron | 25.0% |
| !! | ATTTGTTAGGTTTAATCTAG+GGG | + | chr5_3:51161425-51161444 | Msa0816660:intron | 25.0% |
| ! | AAATCAAAAAGAAATGCAGA+AGG | - | chr5_3:51161492-51161511 | None:intergenic | 25.0% |
| !!! | CATTTCTTTTTGATTTCTTG+AGG | + | chr5_3:51161496-51161515 | Msa0816660:intron | 25.0% |
| !! | TTAAGGAATTGAACATTTTG+TGG | + | chr5_3:51161562-51161581 | Msa0816660:intron | 25.0% |
| ! | AAATTGTTTCATTCATGAAC+AGG | - | chr5_3:51161684-51161703 | None:intergenic | 25.0% |
| ! | ATCCTTCAAATTACATATTG+TGG | - | chr5_3:51161937-51161956 | None:intergenic | 25.0% |
| !!! | AATTTTTTTATGGCTCTAGT+TGG | - | chr5_3:51162035-51162054 | None:intergenic | 25.0% |
| !!! | TTTTAAGATTGAGCTTGTAT+TGG | - | chr5_3:51162211-51162230 | None:intergenic | 25.0% |
| !! | GCATTTTTGAATTGGTTAAT+CGG | - | chr5_3:51162342-51162361 | None:intergenic | 25.0% |
| !! | ATGAAACTGCATTTTTGAAT+TGG | - | chr5_3:51162350-51162369 | None:intergenic | 25.0% |
| !!! | ATTTTAATCAATCATGACTC+TGG | - | chr5_3:51162592-51162611 | None:intergenic | 25.0% |
| ! | TTGACCTGATAATTGATAAA+GGG | + | chr5_3:51162645-51162664 | Msa0816660:intron | 25.0% |
| ! | ATTACCCTTTATCAATTATC+AGG | - | chr5_3:51162652-51162671 | None:intergenic | 25.0% |
| ! | AATCTATGTAAAGGATCTAT+TGG | + | chr5_3:51162687-51162706 | Msa0816660:CDS | 25.0% |
| ! | TTATGATATGTATGCATTCA+CGG | + | chr5_3:51162986-51163005 | Msa0816660:intron | 25.0% |
| ! | TACTAAACATAAGTTTGGTT+TGG | - | chr5_3:51163102-51163121 | None:intergenic | 25.0% |
| !! | AGTATTTTCTCTAATGTTCT+TGG | + | chr5_3:51163118-51163137 | Msa0816660:intron | 25.0% |
| ! | TTTCAAATCTCTTCTAATGT+TGG | + | chr5_3:51163285-51163304 | Msa0816660:three_prime_UTR | 25.0% |
| ! | TTAATCATATGAGCATTAAC+TGG | + | chr5_3:51163387-51163406 | Msa0816660:three_prime_UTR | 25.0% |
| ! | ACAATATAATGGTGAAACTT+TGG | + | chr5_3:51163480-51163499 | Msa0816660:three_prime_UTR | 25.0% |
| !!! | CTTTGAAATCATCTATGTAA+TGG | + | chr5_3:51163520-51163539 | Msa0816660:intron | 25.0% |
| !! | TTTGGTTTGGTTTGTATAGA+AGG | - | chr5_3:51160387-51160406 | None:intergenic | 30.0% |
| ! | AAAGAGAAGTTACTTTGGTT+TGG | - | chr5_3:51160400-51160419 | None:intergenic | 30.0% |
| CATGCAATGTCTTTCTAATA+TGG | + | chr5_3:51160675-51160694 | Msa0816660:intron | 30.0% | |
| !!! | TGGTGTTTTATTTTTCCTCT+TGG | + | chr5_3:51160695-51160714 | Msa0816660:intron | 30.0% |
| !! | GACATGAAATGTTCACTTTT+TGG | + | chr5_3:51160904-51160923 | Msa0816660:intron | 30.0% |
| TTTGTGTGTGTTTGTGTTTA+TGG | + | chr5_3:51160929-51160948 | Msa0816660:intron | 30.0% | |
| TGGTATCTTAAACCTTTGTT+AGG | + | chr5_3:51160949-51160968 | Msa0816660:intron | 30.0% | |
| TTAATCAATTGCCTTGTGTT+TGG | + | chr5_3:51161005-51161024 | Msa0816660:intron | 30.0% | |
| ACTATCTTGAACCAATTTAG+TGG | - | chr5_3:51161302-51161321 | None:intergenic | 30.0% | |
| ! | GAAATAGGAAGAGATTTGTT+AGG | + | chr5_3:51161412-51161431 | Msa0816660:intron | 30.0% |
| TTTGTTAGGTTTAATCTAGG+GGG | + | chr5_3:51161426-51161445 | Msa0816660:intron | 30.0% | |
| !!! | TTCTTTTTGATTTCTTGAGG+AGG | + | chr5_3:51161499-51161518 | Msa0816660:intron | 30.0% |
| TTGAATGTATCCACATACAT+CGG | + | chr5_3:51161854-51161873 | Msa0816660:intron | 30.0% | |
| CTCCACAATATGTAATTTGA+AGG | + | chr5_3:51161932-51161951 | Msa0816660:intron | 30.0% | |
| TCAAAGTTACATACATGCAA+TGG | + | chr5_3:51161956-51161975 | Msa0816660:intron | 30.0% | |
| !!! | AAGCAGACGTTTATTTTTAC+TGG | - | chr5_3:51161983-51162002 | None:intergenic | 30.0% |
| ACAAATTTCTCATTCCATAC+CGG | - | chr5_3:51162158-51162177 | None:intergenic | 30.0% | |
| TGAGAAATTTGTATTCAGAG+TGG | + | chr5_3:51162166-51162185 | Msa0816660:CDS | 30.0% | |
| CAAGCTCAATCTTAAAATCA+TGG | + | chr5_3:51162214-51162233 | Msa0816660:CDS | 30.0% | |
| CAATCTTAAAATCATGGACA+AGG | + | chr5_3:51162220-51162239 | Msa0816660:CDS | 30.0% | |
| ! | TTTTCTTCCGATGATTTTGT+TGG | + | chr5_3:51162248-51162267 | Msa0816660:CDS | 30.0% |
| ! | TATTTTTCGTGATCTGTGAT+TGG | + | chr5_3:51162509-51162528 | Msa0816660:intron | 30.0% |
| AACACTGCATCTATGAATAA+GGG | + | chr5_3:51162533-51162552 | Msa0816660:intron | 30.0% | |
| ACAAAAAACCCTAAATGAGT+AGG | + | chr5_3:51162558-51162577 | Msa0816660:intron | 30.0% | |
| TGTAATGTCCTACTCATTTA+GGG | - | chr5_3:51162569-51162588 | None:intergenic | 30.0% | |
| CTTGACCTGATAATTGATAA+AGG | + | chr5_3:51162644-51162663 | Msa0816660:intron | 30.0% | |
| TAGATCCTTTACATAGATTC+TGG | - | chr5_3:51162686-51162705 | None:intergenic | 30.0% | |
| ! | TCATACACTACATATTGACT+TGG | - | chr5_3:51162961-51162980 | None:intergenic | 30.0% |
| AATCAGAAAACGATAGTTTC+AGG | - | chr5_3:51163434-51163453 | None:intergenic | 30.0% | |
| CTTCAAGAGACTGATATCTT+TGG | + | chr5_3:51160610-51160629 | Msa0816660:CDS | 35.0% | |
| AGATCAGAAGATAAACCAAG+AGG | - | chr5_3:51160713-51160732 | None:intergenic | 35.0% | |
| CATTTGCATGTAAATCTGAG+AGG | - | chr5_3:51160738-51160757 | None:intergenic | 35.0% | |
| TTCTCTATCTCTCCTAACAA+AGG | - | chr5_3:51160964-51160983 | None:intergenic | 35.0% | |
| AATGAAATGTCCGAAGTGAA+TGG | + | chr5_3:51161175-51161194 | Msa0816660:intron | 35.0% | |
| AAATACTCCACCATTCACTT+CGG | - | chr5_3:51161188-51161207 | None:intergenic | 35.0% | |
| TGTAGTTCATGATTCAACGA+TGG | + | chr5_3:51161274-51161293 | Msa0816660:intron | 35.0% | |
| AGTAAGTTAATCTTCCCTGA+CGG | + | chr5_3:51161319-51161338 | Msa0816660:intron | 35.0% | |
| CACTCTTTCAATATCACAAC+AGG | - | chr5_3:51161393-51161412 | None:intergenic | 35.0% | |
| !!! | TTTTTGATTTCTTGAGGAGG+AGG | + | chr5_3:51161502-51161521 | Msa0816660:intron | 35.0% |
| !!! | TTTTGATTTCTTGAGGAGGA+GGG | + | chr5_3:51161503-51161522 | Msa0816660:intron | 35.0% |
| ! | ATCTGAGACTATCACACAAA+AGG | + | chr5_3:51161606-51161625 | Msa0816660:intron | 35.0% |
| ! | TCTGAGACTATCACACAAAA+GGG | + | chr5_3:51161607-51161626 | Msa0816660:intron | 35.0% |
| TTTATCCATGTGTGACAACT+GGG | - | chr5_3:51161637-51161656 | None:intergenic | 35.0% | |
| ATTTATCCATGTGTGACAAC+TGG | - | chr5_3:51161638-51161657 | None:intergenic | 35.0% | |
| CCACTTCATAATGAAATGTG+TGG | - | chr5_3:51161661-51161680 | None:intergenic | 35.0% | |
| CCACACATTTCATTATGAAG+TGG | + | chr5_3:51161658-51161677 | Msa0816660:intron | 35.0% | |
| TTCACATCTCCTTGAAAAAG+CGG | - | chr5_3:51161734-51161753 | None:intergenic | 35.0% | |
| ! | TGTTTTGTCAGTGCTTCATA+AGG | - | chr5_3:51161776-51161795 | None:intergenic | 35.0% |
| TAATATGACACCGATGTATG+TGG | - | chr5_3:51161867-51161886 | None:intergenic | 35.0% | |
| ATTACATATTGTGGAGCAGT+TGG | - | chr5_3:51161928-51161947 | None:intergenic | 35.0% | |
| GCTAGTATCTTTATCAACAG+TGG | + | chr5_3:51162007-51162026 | Msa0816660:intron | 35.0% | |
| GAAGCAATTGAAGTCTTACA+CGG | - | chr5_3:51162279-51162298 | None:intergenic | 35.0% | |
| ATGACTGATGCAATTAGTTC+AGG | - | chr5_3:51162301-51162320 | None:intergenic | 35.0% | |
| CAACACTGCATCTATGAATA+AGG | + | chr5_3:51162532-51162551 | Msa0816660:intron | 35.0% | |
| GTGTAATGTCCTACTCATTT+AGG | - | chr5_3:51162570-51162589 | None:intergenic | 35.0% | |
| TTTACATAGATTCTGGACAC+GGG | - | chr5_3:51162679-51162698 | None:intergenic | 35.0% | |
| CTTTACATAGATTCTGGACA+CGG | - | chr5_3:51162680-51162699 | None:intergenic | 35.0% | |
| TTCACCGCAATAAGAATTGT+CGG | - | chr5_3:51162773-51162792 | None:intergenic | 35.0% | |
| TGGTATAACTTACACTCGAA+AGG | + | chr5_3:51162801-51162820 | Msa0816660:CDS | 35.0% | |
| ATGTTCTTGGAATTCATCAC+AGG | + | chr5_3:51163131-51163150 | Msa0816660:intron | 35.0% | |
| GAATATACTGACGATGACAT+TGG | + | chr5_3:51163159-51163178 | Msa0816660:CDS | 35.0% | |
| TCTCTCACTTTCTCTCTCAA+AGG | - | chr5_3:51160436-51160455 | None:intergenic | 40.0% | |
| AGAGAGAGAGAGATGACAAT+TGG | + | chr5_3:51160553-51160572 | Msa0816660:exon | 40.0% | |
| GAGAGAGAGAGATGACAATT+GGG | + | chr5_3:51160554-51160573 | Msa0816660:exon | 40.0% | |
| AGAGATGACAATTGGGTTCA+TGG | + | chr5_3:51160561-51160580 | Msa0816660:exon | 40.0% | |
| !! | TTCTTTGTTGATAGCTCGCA+TGG | + | chr5_3:51160781-51160800 | Msa0816660:intron | 40.0% |
| TGTTTCGTTGACCAAACACA+AGG | - | chr5_3:51161019-51161038 | None:intergenic | 40.0% | |
| CGAAACAAAGACATCGAACA+CGG | + | chr5_3:51161032-51161051 | Msa0816660:intron | 40.0% | |
| CAACGATGGAACCACTAAAT+TGG | + | chr5_3:51161288-51161307 | Msa0816660:intron | 40.0% | |
| GTAAGTTAATCTTCCCTGAC+GGG | + | chr5_3:51161320-51161339 | Msa0816660:intron | 40.0% | |
| ! | TTTGATTTCTTGAGGAGGAG+GGG | + | chr5_3:51161504-51161523 | Msa0816660:intron | 40.0% |
| TTATCCATGTGTGACAACTG+GGG | - | chr5_3:51161636-51161655 | None:intergenic | 40.0% | |
| !! | TTGAAAAAGCGGACTACACA+CGG | - | chr5_3:51161723-51161742 | None:intergenic | 40.0% |
| GTGTCATATTAGTGTCTGAC+CGG | + | chr5_3:51161876-51161895 | Msa0816660:intron | 40.0% | |
| TATTGTGGAGCAGTTGGAAA+AGG | - | chr5_3:51161922-51161941 | None:intergenic | 40.0% | |
| TGGTGTATTGAATGATGCAG+AGG | + | chr5_3:51162121-51162140 | Msa0816660:intron | 40.0% | |
| GGTGTATTGAATGATGCAGA+GGG | + | chr5_3:51162122-51162141 | Msa0816660:intron | 40.0% | |
| GTGTATTGAATGATGCAGAG+GGG | + | chr5_3:51162123-51162142 | Msa0816660:intron | 40.0% | |
| TGTATTGAATGATGCAGAGG+GGG | + | chr5_3:51162124-51162143 | Msa0816660:intron | 40.0% | |
| ! | TTCCGATGATTTTGTTGGTC+AGG | + | chr5_3:51162253-51162272 | Msa0816660:CDS | 40.0% |
| CTATTCAACAAGCGTATAGC+TGG | - | chr5_3:51162440-51162459 | None:intergenic | 40.0% | |
| CGTGTCCAGAATCTATGTAA+AGG | + | chr5_3:51162678-51162697 | Msa0816660:intron | 40.0% | |
| GTAAAGGATCTATTGGCAGA+AGG | + | chr5_3:51162694-51162713 | Msa0816660:CDS | 40.0% | |
| TGATATGTATGCATTCACGG+TGG | + | chr5_3:51162989-51163008 | Msa0816660:intron | 40.0% | |
| GATATGTATGCATTCACGGT+GGG | + | chr5_3:51162990-51163009 | Msa0816660:intron | 40.0% | |
| ATATGTATGCATTCACGGTG+GGG | + | chr5_3:51162991-51163010 | Msa0816660:intron | 40.0% | |
| TATACTGACGATGACATTGG+AGG | + | chr5_3:51163162-51163181 | Msa0816660:CDS | 40.0% | |
| AGCAGATGTAGGATTTGGAA+TGG | + | chr5_3:51163217-51163236 | Msa0816660:three_prime_UTR | 40.0% | |
| CTCACTTTCTCTCTCAAAGG+TGG | - | chr5_3:51160433-51160452 | None:intergenic | 45.0% | |
| GATGACAATTGGGTTCATGG+AGG | + | chr5_3:51160564-51160583 | Msa0816660:exon | 45.0% | |
| GTGCTTCTGGTGAAAGCAAA+GGG | + | chr5_3:51160586-51160605 | Msa0816660:CDS | 45.0% | |
| CACAAGAGCAGTGTAGTTCA+TGG | + | chr5_3:51160839-51160858 | Msa0816660:CDS | 45.0% | |
| GAAATGTCCGAAGTGAATGG+TGG | + | chr5_3:51161178-51161197 | Msa0816660:intron | 45.0% | |
| TTGATTTCTTGAGGAGGAGG+GGG | + | chr5_3:51161505-51161524 | Msa0816660:intron | 45.0% | |
| !! | TGAAAAAGCGGACTACACAC+GGG | - | chr5_3:51161722-51161741 | None:intergenic | 45.0% |
| !!! | GTGTGTAGTCCGCTTTTTCA+AGG | + | chr5_3:51161722-51161741 | Msa0816660:intron | 45.0% |
| TGATGAGAGTCACTCGTGTT+TGG | - | chr5_3:51161799-51161818 | None:intergenic | 45.0% | |
| AGAAGACACCTATGAAGCAC+CGG | - | chr5_3:51161898-51161917 | None:intergenic | 45.0% | |
| GTATTGAATGATGCAGAGGG+GGG | + | chr5_3:51162125-51162144 | Msa0816660:intron | 45.0% | |
| GTATTCAGAGTGGAATACCC+TGG | + | chr5_3:51162176-51162195 | Msa0816660:CDS | 45.0% | |
| ! | TGTATTGGTCACCTGATCCA+GGG | - | chr5_3:51162196-51162215 | None:intergenic | 45.0% |
| ! | TTGTATTGGTCACCTGATCC+AGG | - | chr5_3:51162197-51162216 | None:intergenic | 45.0% |
| GGCCTGACCAACAAAATCAT+CGG | - | chr5_3:51162258-51162277 | None:intergenic | 45.0% | |
| CGAGCCGACAATTCTTATTG+CGG | + | chr5_3:51162766-51162785 | Msa0816660:CDS | 45.0% | |
| TATTGCGGTGAACTCGAAGT+TGG | + | chr5_3:51162781-51162800 | Msa0816660:CDS | 45.0% | |
| TATGTATGCATTCACGGTGG+GGG | + | chr5_3:51162992-51163011 | Msa0816660:intron | 45.0% | |
| GTTCATTGTGCAGCAGATGT+AGG | + | chr5_3:51163206-51163225 | Msa0816660:exon | 45.0% | |
| TGTGCAGCAGATGTAGGATT+TGG | + | chr5_3:51163212-51163231 | Msa0816660:three_prime_UTR | 45.0% | |
| !!! | ATAACTATTTTTATTTATTA+AGG | + | chr5_3:51161545-51161564 | Msa0816660:intron | 5.0% |
| GGTGCTTCTGGTGAAAGCAA+AGG | + | chr5_3:51160585-51160604 | Msa0816660:CDS | 50.0% | |
| GTGCTGTCACTACTCGACAT+CGG | + | chr5_3:51161127-51161146 | Msa0816660:intron | 50.0% | |
| ACTACTCGACATCGGCACAT+GGG | + | chr5_3:51161135-51161154 | Msa0816660:intron | 50.0% | |
| ! | AATCTTCCCTGACGGGTACA+CGG | + | chr5_3:51161327-51161346 | Msa0816660:intron | 50.0% |
| ACTAATCCGTGTACCCGTCA+GGG | - | chr5_3:51161336-51161355 | None:intergenic | 50.0% | |
| TACTAATCCGTGTACCCGTC+AGG | - | chr5_3:51161337-51161356 | None:intergenic | 50.0% | |
| GGATGCAGTTCATCTGTGAG+TGG | + | chr5_3:51161447-51161466 | Msa0816660:intron | 50.0% | |
| GTTACCCCAGTTGTCACACA+TGG | + | chr5_3:51161629-51161648 | Msa0816660:intron | 50.0% | |
| AGAGTGGAATACCCTGGATC+AGG | + | chr5_3:51162182-51162201 | Msa0816660:CDS | 50.0% | |
| TTGGCAGAAGGAGCAGAGAA+TGG | + | chr5_3:51162706-51162725 | Msa0816660:CDS | 50.0% | |
| TCGTCCTCGCAAGTATAGTG+TGG | + | chr5_3:51162741-51162760 | Msa0816660:CDS | 50.0% | |
| CGAACCACACTATACTTGCG+AGG | - | chr5_3:51162748-51162767 | None:intergenic | 50.0% | |
| CTGACGATGACATTGGAGGA+TGG | + | chr5_3:51163166-51163185 | Msa0816660:CDS | 50.0% | |
| ACGATGACATTGGAGGATGG+AGG | + | chr5_3:51163169-51163188 | Msa0816660:CDS | 50.0% | |
| CGATGACATTGGAGGATGGA+GGG | + | chr5_3:51163170-51163189 | Msa0816660:CDS | 50.0% | |
| !! | TGGGTTCATGGAGGTGCTTC+TGG | + | chr5_3:51160573-51160592 | Msa0816660:CDS | 55.0% |
| CACTACTCGACATCGGCACA+TGG | + | chr5_3:51161134-51161153 | Msa0816660:intron | 55.0% | |
| !! | AAAGCGGACTACACACGGGA+GGG | - | chr5_3:51161718-51161737 | None:intergenic | 55.0% |
| !! | AAAAGCGGACTACACACGGG+AGG | - | chr5_3:51161719-51161738 | None:intergenic | 55.0% |
| GTGTCTGACCGGTGCTTCAT+AGG | + | chr5_3:51161887-51161906 | Msa0816660:intron | 55.0% | |
| !! | AAGCGGACTACACACGGGAG+GGG | - | chr5_3:51161717-51161736 | None:intergenic | 60.0% |
| ATGATGCAGAGGGGGGTAGC+AGG | + | chr5_3:51162132-51162151 | Msa0816660:intron | 60.0% | |
| !! | AGCGGACTACACACGGGAGG+GGG | - | chr5_3:51161716-51161735 | None:intergenic | 65.0% |
| ! | TCACGGTGGGGGCGCATGTT+TGG | + | chr5_3:51163003-51163022 | Msa0816660:intron | 65.0% |
| ! | GCGGACTACACACGGGAGGG+GGG | - | chr5_3:51161715-51161734 | None:intergenic | 70.0% |
| TGCAGAGGGGGGTAGCAGGC+CGG | + | chr5_3:51162136-51162155 | Msa0816660:intron | 70.0% | |
| AGGGGGGTAGCAGGCCGGTA+TGG | + | chr5_3:51162141-51162160 | Msa0816660:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_3 | gene | 51160301 | 51163572 | 51160301 | ID=Msa0816660;Name=Msa0816660 |
| chr5_3 | mRNA | 51160301 | 51163572 | 51160301 | ID=Msa0816660-mRNA-1;Parent=Msa0816660;Name=Msa0816660-mRNA-1;_AED=0.06;_eAED=0.06;_QI=197|1|1|1|0.66|0.42|7|343|153 |
| chr5_3 | exon | 51160301 | 51160483 | 51160301 | ID=Msa0816660-mRNA-1:exon:15321;Parent=Msa0816660-mRNA-1 |
| chr5_3 | exon | 51160551 | 51160631 | 51160551 | ID=Msa0816660-mRNA-1:exon:15322;Parent=Msa0816660-mRNA-1 |
| chr5_3 | exon | 51160795 | 51160860 | 51160795 | ID=Msa0816660-mRNA-1:exon:15323;Parent=Msa0816660-mRNA-1 |
| chr5_3 | exon | 51162141 | 51162279 | 51162141 | ID=Msa0816660-mRNA-1:exon:15324;Parent=Msa0816660-mRNA-1 |
| chr5_3 | exon | 51162687 | 51162822 | 51162687 | ID=Msa0816660-mRNA-1:exon:15325;Parent=Msa0816660-mRNA-1 |
| chr5_3 | exon | 51163153 | 51163508 | 51163153 | ID=Msa0816660-mRNA-1:exon:15326;Parent=Msa0816660-mRNA-1 |
| chr5_3 | exon | 51163532 | 51163572 | 51163532 | ID=Msa0816660-mRNA-1:exon:15327;Parent=Msa0816660-mRNA-1 |
| chr5_3 | five_prime_UTR | 51160301 | 51160483 | 51160301 | ID=Msa0816660-mRNA-1:five_prime_utr;Parent=Msa0816660-mRNA-1 |
| chr5_3 | five_prime_UTR | 51160551 | 51160564 | 51160551 | ID=Msa0816660-mRNA-1:five_prime_utr;Parent=Msa0816660-mRNA-1 |
| chr5_3 | CDS | 51160565 | 51160631 | 51160565 | ID=Msa0816660-mRNA-1:cds;Parent=Msa0816660-mRNA-1 |
| chr5_3 | CDS | 51160795 | 51160860 | 51160795 | ID=Msa0816660-mRNA-1:cds;Parent=Msa0816660-mRNA-1 |
| chr5_3 | CDS | 51162141 | 51162279 | 51162141 | ID=Msa0816660-mRNA-1:cds;Parent=Msa0816660-mRNA-1 |
| chr5_3 | CDS | 51162687 | 51162822 | 51162687 | ID=Msa0816660-mRNA-1:cds;Parent=Msa0816660-mRNA-1 |
| chr5_3 | CDS | 51163153 | 51163206 | 51163153 | ID=Msa0816660-mRNA-1:cds;Parent=Msa0816660-mRNA-1 |
| chr5_3 | three_prime_UTR | 51163207 | 51163508 | 51163207 | ID=Msa0816660-mRNA-1:three_prime_utr;Parent=Msa0816660-mRNA-1 |
| chr5_3 | three_prime_UTR | 51163532 | 51163572 | 51163532 | ID=Msa0816660-mRNA-1:three_prime_utr;Parent=Msa0816660-mRNA-1 |
| Gene Sequence |
| Protein sequence |
