Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0737480 | XP_003616407.1 | 99.346 | 153 | 1 | 0 | 1 | 153 | 1 | 153 | 5.94e-108 | 314 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0737480 | sp|Q9M2T2|PP16A_ARATH | 49.351 | 154 | 76 | 2 | 1 | 152 | 1 | 154 | 4.97e-51 | 162 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0737480 | G7KBR2 | 99.346 | 153 | 1 | 0 | 1 | 153 | 1 | 153 | 2.84e-108 | 314 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0043650 | Msa0737480 | 0.800496 | 1.402827e-48 | -8.615850e-47 |
| Msa0737480 | Msa0750810 | 0.822272 | 2.589312e-53 | -8.615850e-47 |
| Msa0737480 | Msa0779260 | 0.901159 | 3.552414e-78 | -8.615850e-47 |
| Msa0737480 | Msa0794210 | 0.807255 | 5.525736e-50 | -8.615850e-47 |
| Msa0737480 | Msa0816660 | 0.944545 | 1.600054e-103 | -8.615850e-47 |
| Msa0737480 | Msa0856850 | 0.808374 | 3.196536e-50 | -8.615850e-47 |
| Msa0737480 | Msa1407190 | 0.800350 | 1.502157e-48 | -8.615850e-47 |
| Msa0737480 | Msa1432130 | 0.812586 | 3.934299e-51 | -8.615850e-47 |
| Msa0474940 | Msa0737480 | 0.805817 | 1.111280e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0737480 | MtrunA17_Chr5g0435251 | 99.346 | 153 | 1 | 0 | 1 | 153 | 1 | 153 | 5.46e-112 | 314 |
| Msa0737480 | MtrunA17_Chr5g0435261 | 59.615 | 156 | 60 | 3 | 1 | 153 | 1 | 156 | 6.96e-57 | 175 |
| Msa0737480 | MtrunA17_Chr8g0350031 | 40.645 | 155 | 77 | 4 | 1 | 151 | 1 | 144 | 1.05e-36 | 123 |
| Msa0737480 | MtrunA17_Chr8g0350021 | 41.290 | 155 | 76 | 5 | 1 | 151 | 1 | 144 | 2.96e-36 | 122 |
| Msa0737480 | MtrunA17_Chr8g0348941 | 34.043 | 141 | 92 | 1 | 1 | 140 | 1 | 141 | 4.80e-24 | 92.4 |
| Msa0737480 | MtrunA17_Chr1g0147471 | 52.857 | 70 | 28 | 2 | 25 | 94 | 1 | 65 | 1.98e-19 | 77.0 |
| Msa0737480 | MtrunA17_Chr7g0246521 | 49.123 | 57 | 25 | 1 | 25 | 81 | 1 | 53 | 1.35e-13 | 62.0 |
| Msa0737480 | MtrunA17_Chr5g0393481 | 28.571 | 105 | 71 | 1 | 6 | 110 | 15 | 115 | 1.65e-12 | 62.8 |
| Msa0737480 | MtrunA17_Chr5g0393541 | 25.385 | 130 | 86 | 2 | 6 | 135 | 11 | 129 | 3.14e-11 | 59.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0737480 | AT3G55470.2 | 49.020 | 153 | 77 | 1 | 1 | 152 | 1 | 153 | 2.17e-53 | 166 |
| Msa0737480 | AT3G55470.1 | 49.351 | 154 | 76 | 2 | 1 | 152 | 1 | 154 | 5.05e-52 | 162 |
| Msa0737480 | AT1G63220.1 | 39.355 | 155 | 80 | 4 | 1 | 152 | 1 | 144 | 1.89e-29 | 105 |
| Msa0737480 | AT4G00467.2 | 35.036 | 137 | 81 | 3 | 1 | 133 | 1 | 133 | 4.41e-23 | 90.1 |
| Msa0737480 | AT4G00467.1 | 35.036 | 137 | 81 | 3 | 1 | 133 | 1 | 133 | 7.08e-23 | 90.1 |
| Msa0737480 | AT1G63220.2 | 34.839 | 155 | 73 | 5 | 1 | 152 | 1 | 130 | 4.08e-20 | 80.9 |
| Msa0737480 | AT4G34150.1 | 33.333 | 96 | 60 | 2 | 5 | 100 | 11 | 102 | 1.61e-13 | 66.2 |
| Msa0737480 | AT3G07940.1 | 34.021 | 97 | 58 | 3 | 3 | 99 | 228 | 318 | 3.91e-11 | 60.1 |
Find 46 sgRNAs with CRISPR-Local
Find 180 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTCTCTCACTCTCTCTAAA+AGG | 0.287615 | 5_1:-54720295 | None:intergenic |
| TGGGTTCATGGAGGTGCTTC+TGG | 0.298453 | 5_1:+54720369 | Msa0737480:CDS |
| TTTGGTTTGGTTTGTATAGA+AGG | 0.304188 | 5_1:-54720246 | None:intergenic |
| AGTGATAGAGATATGACAAT+TGG | 0.323731 | 5_1:+54720349 | Msa0737480:exon |
| CTTCAAGAGACTGATATCTT+TGG | 0.365687 | 5_1:+54720406 | Msa0737480:CDS |
| AAAGAGAAGTTACTTTGGTT+TGG | 0.376114 | 5_1:-54720259 | None:intergenic |
| AGATATGACAATTGGGTTCA+TGG | 0.388399 | 5_1:+54720357 | Msa0737480:exon |
| AATCTATGTAAAGGATCTAT+TGG | 0.391697 | 5_1:+54722546 | Msa0737480:CDS |
| TTAATCATATGAGCATTAAC+TGG | 0.403333 | 5_1:+54723251 | Msa0737480:three_prime_UTR |
| CACAAGAGCAGTGTAGTTCA+TGG | 0.424916 | 5_1:+54720636 | Msa0737480:CDS |
| TTTCAAATCTCTTCTAATGT+TGG | 0.443648 | 5_1:+54723149 | Msa0737480:three_prime_UTR |
| TTGTATTGGTCACCTGATCC+AGG | 0.448750 | 5_1:-54722049 | None:intergenic |
| AGTGCAGCAGATGTAGGATT+TGG | 0.451956 | 5_1:+54723076 | Msa0737480:three_prime_UTR |
| AAATGAAAGAGAAGTTACTT+TGG | 0.464961 | 5_1:-54720264 | None:intergenic |
| CAAGCTCAATCTTAAAATCA+TGG | 0.468524 | 5_1:+54722069 | Msa0737480:CDS |
| TTCTTTGTTGATAGCTCGCA+TGG | 0.469488 | 5_1:+54720578 | Msa0737480:intron |
| GTGATAGAGATATGACAATT+GGG | 0.484047 | 5_1:+54720350 | Msa0737480:exon |
| TTGTGCAGTGCAGCAGATGT+AGG | 0.491918 | 5_1:+54723070 | Msa0737480:three_prime_UTR |
| ATGTTCTCTTACAATACAAA+AGG | 0.507230 | 5_1:+54720607 | Msa0737480:CDS |
| AGAGTGGAATACCCTGGATC+AGG | 0.509095 | 5_1:+54722037 | Msa0737480:CDS |
| TTCACCGCAATAAGAATTGT+CGG | 0.511915 | 5_1:-54722629 | None:intergenic |
| TTGTATTGTAAGAGAACATA+CGG | 0.514214 | 5_1:-54720603 | None:intergenic |
| TATTGCGGTGAACTCGAAGT+TGG | 0.529111 | 5_1:+54722640 | Msa0737480:CDS |
| ACAAATTTCTCATTCCATAC+CGG | 0.530096 | 5_1:-54722010 | None:intergenic |
| TTGGCAGAAGGAGCAGAGAA+TGG | 0.534847 | 5_1:+54722565 | Msa0737480:CDS |
| GTGCTTCTGGTGAAAGCAAA+GGG | 0.538178 | 5_1:+54720382 | Msa0737480:CDS |
| CGTGTCCAGAATCTATGTAA+AGG | 0.538764 | 5_1:+54722537 | Msa0737480:intron |
| GAATATACTGACGATGACAT+TGG | 0.554722 | 5_1:+54723018 | Msa0737480:CDS |
| CAATCTTAAAATCATGGACA+AGG | 0.579708 | 5_1:+54722075 | Msa0737480:CDS |
| CGATGACATTGGAGGATGGA+GGG | 0.582080 | 5_1:+54723029 | Msa0737480:CDS |
| TGAGAAATTTGTATTCAGAG+TGG | 0.587344 | 5_1:+54722021 | Msa0737480:CDS |
| TGGTATAACTTACACTCGAA+AGG | 0.597779 | 5_1:+54722660 | Msa0737480:CDS |
| GGTGCTTCTGGTGAAAGCAA+AGG | 0.600631 | 5_1:+54720381 | Msa0737480:CDS |
| CGAGCCGACAATTCTTATTG+CGG | 0.603237 | 5_1:+54722625 | Msa0737480:CDS |
| GGCCTGACCAACAAAATCAT+CGG | 0.607539 | 5_1:-54722110 | None:intergenic |
| GTAAAGGATCTATTGGCAGA+AGG | 0.610328 | 5_1:+54722553 | Msa0737480:CDS |
| CTCTCACTCTCTCTAAAAGG+TGG | 0.614372 | 5_1:-54720292 | None:intergenic |
| TGTATTGGTCACCTGATCCA+GGG | 0.614439 | 5_1:-54722048 | None:intergenic |
| AGCAGATGTAGGATTTGGAA+TGG | 0.615797 | 5_1:+54723081 | Msa0737480:three_prime_UTR |
| ACGATGACATTGGAGGATGG+AGG | 0.616751 | 5_1:+54723028 | Msa0737480:CDS |
| GTATTCAGAGTGGAATACCC+TGG | 0.618075 | 5_1:+54722031 | Msa0737480:CDS |
| CTGACGATGACATTGGAGGA+TGG | 0.621959 | 5_1:+54723025 | Msa0737480:CDS |
| CGAACCACACTATACTTGCG+AGG | 0.665447 | 5_1:-54722604 | None:intergenic |
| TCGTCCTCGCAAGTATAGTG+TGG | 0.665568 | 5_1:+54722600 | Msa0737480:CDS |
| TATACTGACGATGACATTGG+AGG | 0.665915 | 5_1:+54723021 | Msa0737480:CDS |
| TATGACAATTGGGTTCATGG+AGG | 0.737235 | 5_1:+54720360 | Msa0737480:exon |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAATTGTAAAATCATAAATA+GGG | - | chr5_1:54722782-54722801 | None:intergenic | 10.0% |
| !! | ATAATTGTAAAATCATAAAT+AGG | - | chr5_1:54722783-54722802 | None:intergenic | 10.0% |
| !! | AACATTGATAAAATTAGAAA+GGG | - | chr5_1:54720449-54720468 | None:intergenic | 15.0% |
| !! | AAACATTGATAAAATTAGAA+AGG | - | chr5_1:54720450-54720469 | None:intergenic | 15.0% |
| !!! | TTAGCATTTGAATTTTTTTA+TGG | - | chr5_1:54721899-54721918 | None:intergenic | 15.0% |
| !!! | CATAGATTAAATTTTGTAAG+TGG | + | chr5_1:54721077-54721096 | Msa0737480:intron | 20.0% |
| !!! | ATTTCTTTTTTGATTTCTTG+TGG | + | chr5_1:54721342-54721361 | Msa0737480:intron | 20.0% |
| !!! | TTAAGGAATTAAACATTTTG+TGG | + | chr5_1:54721410-54721429 | Msa0737480:intron | 20.0% |
| !!! | TTGTAGTGAAATTTTATCTA+AGG | - | chr5_1:54721927-54721946 | None:intergenic | 20.0% |
| !!! | TTTTTTTTTCTTTGCTTAAC+TGG | + | chr5_1:54721956-54721975 | Msa0737480:intron | 20.0% |
| !! | TGTAATTGACAATGAAAATT+AGG | - | chr5_1:54722910-54722929 | None:intergenic | 20.0% |
| !!! | ATTTTCATTGTCAATTACAT+TGG | + | chr5_1:54722911-54722930 | Msa0737480:intron | 20.0% |
| !! | ACACGTTTTTGTCATATTAT+CGG | + | chr5_1:54720186-54720205 | Msa0737480:five_prime_UTR | 25.0% |
| ! | AAATGAAAGAGAAGTTACTT+TGG | - | chr5_1:54720267-54720286 | None:intergenic | 25.0% |
| ! | TTGTATTGTAAGAGAACATA+CGG | - | chr5_1:54720606-54720625 | None:intergenic | 25.0% |
| ! | ATGTTCTCTTACAATACAAA+AGG | + | chr5_1:54720607-54720626 | Msa0737480:CDS | 25.0% |
| ! | TTATGTAGTTCATGATTCAA+CGG | + | chr5_1:54721110-54721129 | Msa0737480:intron | 25.0% |
| ! | TGATATTGAAAGAGTGAAAT+AGG | + | chr5_1:54721242-54721261 | Msa0737480:intron | 25.0% |
| !!! | AGATTTGTTAGGTTTAATCT+AGG | + | chr5_1:54721268-54721287 | Msa0737480:intron | 25.0% |
| !!! | GATTTGTTAGGTTTAATCTA+GGG | + | chr5_1:54721269-54721288 | Msa0737480:intron | 25.0% |
| !! | ATTTGTTAGGTTTAATCTAG+GGG | + | chr5_1:54721270-54721289 | Msa0737480:intron | 25.0% |
| ! | AATCAAAAAAGAAATGCAGA+AGG | - | chr5_1:54721337-54721356 | None:intergenic | 25.0% |
| ! | AAATTGTTTCATTCATGAAC+AGG | - | chr5_1:54721532-54721551 | None:intergenic | 25.0% |
| ! | ATCCTTCAAATTACATATTG+TGG | - | chr5_1:54721791-54721810 | None:intergenic | 25.0% |
| ! | TCAAAGTTACATACATTCAA+TGG | + | chr5_1:54721810-54721829 | Msa0737480:intron | 25.0% |
| !!! | TTTTAAGATTGAGCTTGTAT+TGG | - | chr5_1:54722066-54722085 | None:intergenic | 25.0% |
| !! | GCATTTTTGAATTGGTTAAT+CGG | - | chr5_1:54722197-54722216 | None:intergenic | 25.0% |
| !! | ATGAAACTGCATTTTTGAAT+TGG | - | chr5_1:54722205-54722224 | None:intergenic | 25.0% |
| !!! | ATTTTAATCAATCATGACTC+TGG | - | chr5_1:54722450-54722469 | None:intergenic | 25.0% |
| ! | TTGACCTGATAATTGATAAA+GGG | + | chr5_1:54722504-54722523 | Msa0737480:intron | 25.0% |
| ! | ATTACCCTTTATCAATTATC+AGG | - | chr5_1:54722511-54722530 | None:intergenic | 25.0% |
| ! | AATCTATGTAAAGGATCTAT+TGG | + | chr5_1:54722546-54722565 | Msa0737480:CDS | 25.0% |
| ! | TTATGATATGTATGCATTCA+CGG | + | chr5_1:54722845-54722864 | Msa0737480:intron | 25.0% |
| ! | TACTAAACATAAGTTTGGTT+TGG | - | chr5_1:54722961-54722980 | None:intergenic | 25.0% |
| ! | GACAATACTAAACATAAGTT+TGG | - | chr5_1:54722966-54722985 | None:intergenic | 25.0% |
| ! | TTTCAAATCTCTTCTAATGT+TGG | + | chr5_1:54723149-54723168 | Msa0737480:three_prime_UTR | 25.0% |
| ! | TTAATCATATGAGCATTAAC+TGG | + | chr5_1:54723251-54723270 | Msa0737480:three_prime_UTR | 25.0% |
| !! | TGAAATTATCGTTTTCTGAT+TGG | + | chr5_1:54723296-54723315 | Msa0737480:three_prime_UTR | 25.0% |
| ! | AGTTTGTGTAAATATTCGTT+TGG | + | chr5_1:54723319-54723338 | Msa0737480:intron | 25.0% |
| !! | TTTGGTTTGGTTTGTATAGA+AGG | - | chr5_1:54720249-54720268 | None:intergenic | 30.0% |
| ! | AAAGAGAAGTTACTTTGGTT+TGG | - | chr5_1:54720262-54720281 | None:intergenic | 30.0% |
| AGTGATAGAGATATGACAAT+TGG | + | chr5_1:54720349-54720368 | Msa0737480:exon | 30.0% | |
| GTGATAGAGATATGACAATT+GGG | + | chr5_1:54720350-54720369 | Msa0737480:exon | 30.0% | |
| CATGCAATGTCTTTCTAATA+TGG | + | chr5_1:54720471-54720490 | Msa0737480:intron | 30.0% | |
| !!! | TGGTGTTTTATTTTTCCTCT+TGG | + | chr5_1:54720491-54720510 | Msa0737480:intron | 30.0% |
| !! | GACATGAAATGTTCACTTTT+TGG | + | chr5_1:54720701-54720720 | Msa0737480:intron | 30.0% |
| ! | AACACAAACACACACAATTT+TGG | - | chr5_1:54720770-54720789 | None:intergenic | 30.0% |
| ATTGTGTGTGTTTGTGTTTA+TGG | + | chr5_1:54720772-54720791 | Msa0737480:intron | 30.0% | |
| TGGTATCTTAAACCTTTGTT+AGG | + | chr5_1:54720792-54720811 | Msa0737480:intron | 30.0% | |
| TTAATCAATTGCCTTGTGTT+TGG | + | chr5_1:54720848-54720867 | Msa0737480:intron | 30.0% | |
| ACTATCTTGAACCAATTTAG+TGG | - | chr5_1:54721141-54721160 | None:intergenic | 30.0% | |
| ! | GAAATAGGAAGAGATTTGTT+AGG | + | chr5_1:54721257-54721276 | Msa0737480:intron | 30.0% |
| TTTGTTAGGTTTAATCTAGG+GGG | + | chr5_1:54721271-54721290 | Msa0737480:intron | 30.0% | |
| !!! | TCTTTTTTGATTTCTTGTGG+AGG | + | chr5_1:54721345-54721364 | Msa0737480:intron | 30.0% |
| TTGAATGTATCCACATACAT+CGG | + | chr5_1:54721702-54721721 | Msa0737480:intron | 30.0% | |
| CTCCACAATATGTAATTTGA+AGG | + | chr5_1:54721786-54721805 | Msa0737480:intron | 30.0% | |
| !!! | AAGCAGACGTTTATTTTTAC+TGG | - | chr5_1:54721837-54721856 | None:intergenic | 30.0% |
| GCTAGTATATTTATCAACAG+TGG | + | chr5_1:54721861-54721880 | Msa0737480:intron | 30.0% | |
| ACAAATTTCTCATTCCATAC+CGG | - | chr5_1:54722013-54722032 | None:intergenic | 30.0% | |
| TGAGAAATTTGTATTCAGAG+TGG | + | chr5_1:54722021-54722040 | Msa0737480:CDS | 30.0% | |
| CAAGCTCAATCTTAAAATCA+TGG | + | chr5_1:54722069-54722088 | Msa0737480:CDS | 30.0% | |
| CAATCTTAAAATCATGGACA+AGG | + | chr5_1:54722075-54722094 | Msa0737480:CDS | 30.0% | |
| ! | TTTTCTTCCGATGATTTTGT+TGG | + | chr5_1:54722103-54722122 | Msa0737480:CDS | 30.0% |
| ! | ATGACTGATGCAATTAGTTT+AGG | - | chr5_1:54722156-54722175 | None:intergenic | 30.0% |
| ! | TATTTTTCGTGATCTGTGAT+TGG | + | chr5_1:54722367-54722386 | Msa0737480:intron | 30.0% |
| AACACTGCATCTATGAATAA+GGG | + | chr5_1:54722391-54722410 | Msa0737480:intron | 30.0% | |
| ACAAAAAACCCTAAATGAGT+AGG | + | chr5_1:54722416-54722435 | Msa0737480:intron | 30.0% | |
| TGTAATGTCCTACTCATTTA+GGG | - | chr5_1:54722427-54722446 | None:intergenic | 30.0% | |
| CTTGACCTGATAATTGATAA+AGG | + | chr5_1:54722503-54722522 | Msa0737480:intron | 30.0% | |
| TAGATCCTTTACATAGATTC+TGG | - | chr5_1:54722545-54722564 | None:intergenic | 30.0% | |
| !! | TTACTTGTTATGCAAACCAT+TGG | + | chr5_1:54722720-54722739 | Msa0737480:intron | 30.0% |
| !!! | GAAAGTCACATTTTTTCCAA+TGG | - | chr5_1:54722739-54722758 | None:intergenic | 30.0% |
| AGTATTGTCTCTAATGTTCT+TGG | + | chr5_1:54722977-54722996 | Msa0737480:intron | 30.0% | |
| ATTCGTTTGGTACAATATGA+TGG | + | chr5_1:54723332-54723351 | Msa0737480:intron | 30.0% | |
| ! | ACAATATGATGGTGAAACTT+TGG | + | chr5_1:54723343-54723362 | Msa0737480:intron | 30.0% |
| AGATATGACAATTGGGTTCA+TGG | + | chr5_1:54720357-54720376 | Msa0737480:exon | 35.0% | |
| CTTCAAGAGACTGATATCTT+TGG | + | chr5_1:54720406-54720425 | Msa0737480:CDS | 35.0% | |
| AGATCAGAAGATAAACCAAG+AGG | - | chr5_1:54720509-54720528 | None:intergenic | 35.0% | |
| CATTTGCATGTAAATCTGAG+AGG | - | chr5_1:54720534-54720553 | None:intergenic | 35.0% | |
| TTCTCTATCTCTCCTAACAA+AGG | - | chr5_1:54720807-54720826 | None:intergenic | 35.0% | |
| AATGAAATGTCCGAAGTGAA+TGG | + | chr5_1:54721019-54721038 | Msa0737480:intron | 35.0% | |
| AAATACTCCACCATTCACTT+CGG | - | chr5_1:54721032-54721051 | None:intergenic | 35.0% | |
| TGTAAGTTAATCTTCCCTGA+CGG | + | chr5_1:54721164-54721183 | Msa0737480:intron | 35.0% | |
| CACTCTTTCAATATCACAAC+AGG | - | chr5_1:54721238-54721257 | None:intergenic | 35.0% | |
| !!! | TTTTTGATTTCTTGTGGAGG+AGG | + | chr5_1:54721348-54721367 | Msa0737480:intron | 35.0% |
| !!! | TTTTGATTTCTTGTGGAGGA+GGG | + | chr5_1:54721349-54721368 | Msa0737480:intron | 35.0% |
| ! | ATCTGAGACTATCACACAAA+AGG | + | chr5_1:54721454-54721473 | Msa0737480:intron | 35.0% |
| ! | TCTGAGACTATCACACAAAA+GGG | + | chr5_1:54721455-54721474 | Msa0737480:intron | 35.0% |
| TTTATCCATGTGTGACAACT+GGG | - | chr5_1:54721485-54721504 | None:intergenic | 35.0% | |
| ATTTATCCATGTGTGACAAC+TGG | - | chr5_1:54721486-54721505 | None:intergenic | 35.0% | |
| CCACTTCATAATGAAATGTG+TGG | - | chr5_1:54721509-54721528 | None:intergenic | 35.0% | |
| CCACACATTTCATTATGAAG+TGG | + | chr5_1:54721506-54721525 | Msa0737480:intron | 35.0% | |
| TTCACATCTCCTTGAAAAAG+CGG | - | chr5_1:54721582-54721601 | None:intergenic | 35.0% | |
| ! | TGTTTTGTCAGTGCTTCATA+AGG | - | chr5_1:54721624-54721643 | None:intergenic | 35.0% |
| TAATATGACACCGATGTATG+TGG | - | chr5_1:54721715-54721734 | None:intergenic | 35.0% | |
| AGTTGGAAAAGGAAGAAGAA+AGG | - | chr5_1:54721765-54721784 | None:intergenic | 35.0% | |
| ATTACATATTGTGGAGCAGT+TGG | - | chr5_1:54721782-54721801 | None:intergenic | 35.0% | |
| GAAGCAATTGAAGTCTTACA+CGG | - | chr5_1:54722134-54722153 | None:intergenic | 35.0% | |
| CAACACTGCATCTATGAATA+AGG | + | chr5_1:54722390-54722409 | Msa0737480:intron | 35.0% | |
| GTGTAATGTCCTACTCATTT+AGG | - | chr5_1:54722428-54722447 | None:intergenic | 35.0% | |
| TTTACATAGATTCTGGACAC+GGG | - | chr5_1:54722538-54722557 | None:intergenic | 35.0% | |
| CTTTACATAGATTCTGGACA+CGG | - | chr5_1:54722539-54722558 | None:intergenic | 35.0% | |
| TTCACCGCAATAAGAATTGT+CGG | - | chr5_1:54722632-54722651 | None:intergenic | 35.0% | |
| TGGTATAACTTACACTCGAA+AGG | + | chr5_1:54722660-54722679 | Msa0737480:CDS | 35.0% | |
| ! | TCATACACTACATACTGACT+AGG | - | chr5_1:54722820-54722839 | None:intergenic | 35.0% |
| ATGTTCTTGGAATTCATCAC+AGG | + | chr5_1:54722990-54723009 | Msa0737480:intron | 35.0% | |
| GAATATACTGACGATGACAT+TGG | + | chr5_1:54723018-54723037 | Msa0737480:CDS | 35.0% | |
| CTTCTCTCACTCTCTCTAAA+AGG | - | chr5_1:54720298-54720317 | None:intergenic | 40.0% | |
| TATGACAATTGGGTTCATGG+AGG | + | chr5_1:54720360-54720379 | Msa0737480:exon | 40.0% | |
| !! | TTCTTTGTTGATAGCTCGCA+TGG | + | chr5_1:54720578-54720597 | Msa0737480:intron | 40.0% |
| TGTTTCGTTGACCAAACACA+AGG | - | chr5_1:54720862-54720881 | None:intergenic | 40.0% | |
| CGAAACAAAGACATCGAACA+CGG | + | chr5_1:54720875-54720894 | Msa0737480:intron | 40.0% | |
| TGTAGTTCATGATTCAACGG+TGG | + | chr5_1:54721113-54721132 | Msa0737480:intron | 40.0% | |
| GTAAGTTAATCTTCCCTGAC+GGG | + | chr5_1:54721165-54721184 | Msa0737480:intron | 40.0% | |
| ! | TTTGATTTCTTGTGGAGGAG+GGG | + | chr5_1:54721350-54721369 | Msa0737480:intron | 40.0% |
| TTATCCATGTGTGACAACTG+GGG | - | chr5_1:54721484-54721503 | None:intergenic | 40.0% | |
| !! | TTGAAAAAGCGGACTACACA+CGG | - | chr5_1:54721571-54721590 | None:intergenic | 40.0% |
| GTGTCATATTAGTGTCTGAC+CGG | + | chr5_1:54721724-54721743 | Msa0737480:intron | 40.0% | |
| TATTGTGGAGCAGTTGGAAA+AGG | - | chr5_1:54721776-54721795 | None:intergenic | 40.0% | |
| TGGTGTATTGAATGATGCAG+AGG | + | chr5_1:54721976-54721995 | Msa0737480:intron | 40.0% | |
| GGTGTATTGAATGATGCAGA+GGG | + | chr5_1:54721977-54721996 | Msa0737480:intron | 40.0% | |
| GTGTATTGAATGATGCAGAG+GGG | + | chr5_1:54721978-54721997 | Msa0737480:intron | 40.0% | |
| TGTATTGAATGATGCAGAGG+GGG | + | chr5_1:54721979-54721998 | Msa0737480:intron | 40.0% | |
| ! | TTCCGATGATTTTGTTGGTC+AGG | + | chr5_1:54722108-54722127 | Msa0737480:CDS | 40.0% |
| CTATTCAACAAGCGTATAGC+TGG | - | chr5_1:54722298-54722317 | None:intergenic | 40.0% | |
| CGTGTCCAGAATCTATGTAA+AGG | + | chr5_1:54722537-54722556 | Msa0737480:intron | 40.0% | |
| GTAAAGGATCTATTGGCAGA+AGG | + | chr5_1:54722553-54722572 | Msa0737480:CDS | 40.0% | |
| TGATATGTATGCATTCACGG+TGG | + | chr5_1:54722848-54722867 | Msa0737480:intron | 40.0% | |
| GATATGTATGCATTCACGGT+GGG | + | chr5_1:54722849-54722868 | Msa0737480:intron | 40.0% | |
| ATATGTATGCATTCACGGTG+GGG | + | chr5_1:54722850-54722869 | Msa0737480:intron | 40.0% | |
| TATACTGACGATGACATTGG+AGG | + | chr5_1:54723021-54723040 | Msa0737480:CDS | 40.0% | |
| AGCAGATGTAGGATTTGGAA+TGG | + | chr5_1:54723081-54723100 | Msa0737480:three_prime_UTR | 40.0% | |
| ! | CTCTCACTCTCTCTAAAAGG+TGG | - | chr5_1:54720295-54720314 | None:intergenic | 45.0% |
| GTGCTTCTGGTGAAAGCAAA+GGG | + | chr5_1:54720382-54720401 | Msa0737480:CDS | 45.0% | |
| CACAAGAGCAGTGTAGTTCA+TGG | + | chr5_1:54720636-54720655 | Msa0737480:CDS | 45.0% | |
| GAAATGTCCGAAGTGAATGG+TGG | + | chr5_1:54721022-54721041 | Msa0737480:intron | 45.0% | |
| CAACGGTGGAACCACTAAAT+TGG | + | chr5_1:54721127-54721146 | Msa0737480:intron | 45.0% | |
| TTGATTTCTTGTGGAGGAGG+GGG | + | chr5_1:54721351-54721370 | Msa0737480:intron | 45.0% | |
| !! | TGAAAAAGCGGACTACACAC+GGG | - | chr5_1:54721570-54721589 | None:intergenic | 45.0% |
| !!! | GTGTGTAGTCCGCTTTTTCA+AGG | + | chr5_1:54721570-54721589 | Msa0737480:intron | 45.0% |
| TGATGAGAGTCACTCGTGTT+TGG | - | chr5_1:54721647-54721666 | None:intergenic | 45.0% | |
| AAGGAACACCTATGTAGCAC+CGG | - | chr5_1:54721746-54721765 | None:intergenic | 45.0% | |
| GTATTGAATGATGCAGAGGG+GGG | + | chr5_1:54721980-54721999 | Msa0737480:intron | 45.0% | |
| GTATTCAGAGTGGAATACCC+TGG | + | chr5_1:54722031-54722050 | Msa0737480:CDS | 45.0% | |
| ! | TGTATTGGTCACCTGATCCA+GGG | - | chr5_1:54722051-54722070 | None:intergenic | 45.0% |
| ! | TTGTATTGGTCACCTGATCC+AGG | - | chr5_1:54722052-54722071 | None:intergenic | 45.0% |
| GGCCTGACCAACAAAATCAT+CGG | - | chr5_1:54722113-54722132 | None:intergenic | 45.0% | |
| CGAGCCGACAATTCTTATTG+CGG | + | chr5_1:54722625-54722644 | Msa0737480:CDS | 45.0% | |
| TATTGCGGTGAACTCGAAGT+TGG | + | chr5_1:54722640-54722659 | Msa0737480:CDS | 45.0% | |
| TATGTATGCATTCACGGTGG+GGG | + | chr5_1:54722851-54722870 | Msa0737480:intron | 45.0% | |
| AGTGCAGCAGATGTAGGATT+TGG | + | chr5_1:54723076-54723095 | Msa0737480:three_prime_UTR | 45.0% | |
| !!! | AACTATTTTTTTATTTATTA+AGG | + | chr5_1:54721393-54721412 | Msa0737480:intron | 5.0% |
| GGTGCTTCTGGTGAAAGCAA+AGG | + | chr5_1:54720381-54720400 | Msa0737480:CDS | 50.0% | |
| GTGCTGTCACTACTCGACAT+CGG | + | chr5_1:54720971-54720990 | Msa0737480:intron | 50.0% | |
| ACTACTCGACATCGGCACAT+GGG | + | chr5_1:54720979-54720998 | Msa0737480:intron | 50.0% | |
| ! | AATCTTCCCTGACGGGTACA+CGG | + | chr5_1:54721172-54721191 | Msa0737480:intron | 50.0% |
| ACTAATCCGTGTACCCGTCA+GGG | - | chr5_1:54721181-54721200 | None:intergenic | 50.0% | |
| TACTAATCCGTGTACCCGTC+AGG | - | chr5_1:54721182-54721201 | None:intergenic | 50.0% | |
| GGATGCAGTTCATCTGTGAG+TGG | + | chr5_1:54721292-54721311 | Msa0737480:intron | 50.0% | |
| GTTACCCCAGTTGTCACACA+TGG | + | chr5_1:54721477-54721496 | Msa0737480:intron | 50.0% | |
| AGAGTGGAATACCCTGGATC+AGG | + | chr5_1:54722037-54722056 | Msa0737480:CDS | 50.0% | |
| TTGGCAGAAGGAGCAGAGAA+TGG | + | chr5_1:54722565-54722584 | Msa0737480:CDS | 50.0% | |
| TCGTCCTCGCAAGTATAGTG+TGG | + | chr5_1:54722600-54722619 | Msa0737480:CDS | 50.0% | |
| CGAACCACACTATACTTGCG+AGG | - | chr5_1:54722607-54722626 | None:intergenic | 50.0% | |
| CTGACGATGACATTGGAGGA+TGG | + | chr5_1:54723025-54723044 | Msa0737480:CDS | 50.0% | |
| ACGATGACATTGGAGGATGG+AGG | + | chr5_1:54723028-54723047 | Msa0737480:CDS | 50.0% | |
| CGATGACATTGGAGGATGGA+GGG | + | chr5_1:54723029-54723048 | Msa0737480:CDS | 50.0% | |
| TTGTGCAGTGCAGCAGATGT+AGG | + | chr5_1:54723070-54723089 | Msa0737480:three_prime_UTR | 50.0% | |
| !! | TGGGTTCATGGAGGTGCTTC+TGG | + | chr5_1:54720369-54720388 | Msa0737480:CDS | 55.0% |
| CACTACTCGACATCGGCACA+TGG | + | chr5_1:54720978-54720997 | Msa0737480:intron | 55.0% | |
| !! | AAAGCGGACTACACACGGGA+GGG | - | chr5_1:54721566-54721585 | None:intergenic | 55.0% |
| !! | AAAAGCGGACTACACACGGG+AGG | - | chr5_1:54721567-54721586 | None:intergenic | 55.0% |
| !! | GTGTCTGACCGGTGCTACAT+AGG | + | chr5_1:54721735-54721754 | Msa0737480:intron | 55.0% |
| !! | AAGCGGACTACACACGGGAG+GGG | - | chr5_1:54721565-54721584 | None:intergenic | 60.0% |
| ATGATGCAGAGGGGGGTAGC+AGG | + | chr5_1:54721987-54722006 | Msa0737480:intron | 60.0% | |
| !! | AGCGGACTACACACGGGAGG+GGG | - | chr5_1:54721564-54721583 | None:intergenic | 65.0% |
| ! | TCACGGTGGGGGCGCATGTA+TGG | + | chr5_1:54722862-54722881 | Msa0737480:intron | 65.0% |
| ! | GCGGACTACACACGGGAGGG+GGG | - | chr5_1:54721563-54721582 | None:intergenic | 70.0% |
| TGCAGAGGGGGGTAGCAGGC+CGG | + | chr5_1:54721991-54722010 | Msa0737480:intron | 70.0% | |
| AGGGGGGTAGCAGGCCGGTA+TGG | + | chr5_1:54721996-54722015 | Msa0737480:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_1 | gene | 54720157 | 54723382 | 54720157 | ID=Msa0737480;Name=Msa0737480 |
| chr5_1 | mRNA | 54720157 | 54723382 | 54720157 | ID=Msa0737480-mRNA-1;Parent=Msa0737480;Name=Msa0737480-mRNA-1;_AED=0.28;_eAED=0.28;_QI=204|1|1|1|0.8|0.66|6|270|153 |
| chr5_1 | exon | 54720157 | 54720427 | 54720157 | ID=Msa0737480-mRNA-1:exon:15394;Parent=Msa0737480-mRNA-1 |
| chr5_1 | exon | 54720592 | 54720657 | 54720592 | ID=Msa0737480-mRNA-1:exon:15395;Parent=Msa0737480-mRNA-1 |
| chr5_1 | exon | 54721996 | 54722134 | 54721996 | ID=Msa0737480-mRNA-1:exon:15396;Parent=Msa0737480-mRNA-1 |
| chr5_1 | exon | 54722546 | 54722681 | 54722546 | ID=Msa0737480-mRNA-1:exon:15397;Parent=Msa0737480-mRNA-1 |
| chr5_1 | exon | 54723012 | 54723317 | 54723012 | ID=Msa0737480-mRNA-1:exon:15398;Parent=Msa0737480-mRNA-1 |
| chr5_1 | exon | 54723365 | 54723382 | 54723365 | ID=Msa0737480-mRNA-1:exon:15399;Parent=Msa0737480-mRNA-1 |
| chr5_1 | five_prime_UTR | 54720157 | 54720360 | 54720157 | ID=Msa0737480-mRNA-1:five_prime_utr;Parent=Msa0737480-mRNA-1 |
| chr5_1 | CDS | 54720361 | 54720427 | 54720361 | ID=Msa0737480-mRNA-1:cds;Parent=Msa0737480-mRNA-1 |
| chr5_1 | CDS | 54720592 | 54720657 | 54720592 | ID=Msa0737480-mRNA-1:cds;Parent=Msa0737480-mRNA-1 |
| chr5_1 | CDS | 54721996 | 54722134 | 54721996 | ID=Msa0737480-mRNA-1:cds;Parent=Msa0737480-mRNA-1 |
| chr5_1 | CDS | 54722546 | 54722681 | 54722546 | ID=Msa0737480-mRNA-1:cds;Parent=Msa0737480-mRNA-1 |
| chr5_1 | CDS | 54723012 | 54723065 | 54723012 | ID=Msa0737480-mRNA-1:cds;Parent=Msa0737480-mRNA-1 |
| chr5_1 | three_prime_UTR | 54723066 | 54723317 | 54723066 | ID=Msa0737480-mRNA-1:three_prime_utr;Parent=Msa0737480-mRNA-1 |
| chr5_1 | three_prime_UTR | 54723365 | 54723382 | 54723365 | ID=Msa0737480-mRNA-1:three_prime_utr;Parent=Msa0737480-mRNA-1 |
| Gene Sequence |
| Protein sequence |
