AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0857530

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0857530 MtrunA17_Chr5g0436041 99.694 327 1 0 1 327 1 327 0.0 669
Msa0857530 MtrunA17_Chr7g0240341 70.312 320 88 3 7 323 1 316 1.27e-161 453
Msa0857530 MtrunA17_Chr7g0240341 28.571 203 121 6 33 227 133 319 1.82e-13 70.1
Msa0857530 MtrunA17_Chr5g0396801 38.050 318 175 6 22 321 25 338 7.46e-63 203
Msa0857530 MtrunA17_Chr8g0347451 34.969 326 188 6 16 321 32 353 6.24e-61 198
Msa0857530 MtrunA17_Chr6g0488081 33.333 303 174 5 33 321 18 306 1.46e-48 165
Msa0857530 MtrunA17_Chr6g0488081 31.472 197 119 5 140 323 18 211 7.60e-19 85.5
Msa0857530 MtrunA17_Chr3g0135861 32.698 315 171 7 31 321 32 329 6.30e-48 164
Msa0857530 MtrunA17_Chr3g0135861 30.841 214 129 3 129 323 19 232 6.58e-24 100
Msa0857530 MtrunA17_Chr4g0067231 31.325 332 196 9 22 325 2 329 7.95e-45 155
Msa0857530 MtrunA17_Chr3g0131501 33.447 293 173 9 34 321 205 480 3.06e-44 157
Msa0857530 MtrunA17_Chr3g0131501 29.958 237 141 7 92 318 157 378 4.25e-23 99.4
Msa0857530 MtrunA17_Chr3g0131501 32.500 200 116 5 27 220 292 478 1.10e-19 89.4
Msa0857530 MtrunA17_Chr7g0242311 33.096 281 164 7 45 322 98 357 4.09e-43 152
Msa0857530 MtrunA17_Chr7g0242311 28.492 179 110 6 153 323 99 267 4.31e-11 63.5
Msa0857530 MtrunA17_Chr7g0252401 33.557 298 163 9 34 321 207 479 1.07e-42 153
Msa0857530 MtrunA17_Chr7g0252401 32.323 198 114 5 27 220 296 477 9.44e-23 98.6
Msa0857530 MtrunA17_Chr7g0252401 33.152 184 111 4 140 318 206 382 7.49e-22 95.9
Msa0857530 MtrunA17_Chr3g0137941 32.803 314 186 9 12 323 105 395 5.87e-42 150
Msa0857530 MtrunA17_Chr3g0137941 29.224 219 137 6 15 229 196 400 6.97e-22 95.1
Msa0857530 MtrunA17_Chr3g0137941 29.412 187 113 5 144 324 125 298 3.45e-17 81.6
Msa0857530 MtrunA17_Chr2g0296061 30.915 317 189 9 36 326 17 329 1.20e-41 147
Msa0857530 MtrunA17_Chr2g0296061 28.641 206 124 5 35 225 129 326 8.18e-17 80.1
Msa0857530 MtrunA17_Chr1g0149111 33.220 295 175 9 30 321 135 410 2.87e-41 148
Msa0857530 MtrunA17_Chr1g0149111 29.412 187 121 4 140 324 138 315 1.16e-19 89.0
Msa0857530 MtrunA17_Chr1g0149111 28.708 209 131 6 15 219 213 407 6.26e-19 87.0
Msa0857530 MtrunA17_Chr8g0385571 32.423 293 176 7 34 321 227 502 8.13e-41 149
Msa0857530 MtrunA17_Chr8g0385571 34.239 184 111 5 140 320 226 402 3.21e-22 97.1
Msa0857530 MtrunA17_Chr8g0385571 33.000 200 115 6 27 220 314 500 5.60e-21 93.6
Msa0857530 MtrunA17_Chr4g0006851 33.333 279 166 7 45 322 100 359 2.17e-40 145
Msa0857530 MtrunA17_Chr4g0006851 27.143 210 128 7 26 232 181 368 1.02e-13 71.2
Msa0857530 MtrunA17_Chr4g0006851 30.168 179 107 5 153 323 101 269 9.67e-13 68.6
Msa0857530 MtrunA17_Chr4g0063561 30.847 295 186 5 30 323 119 396 1.84e-39 143
Msa0857530 MtrunA17_Chr4g0063561 29.302 215 131 7 19 226 198 398 2.55e-19 87.8
Msa0857530 MtrunA17_Chr3g0115801 30.476 315 175 7 29 321 111 403 5.16e-34 129
Msa0857530 MtrunA17_Chr3g0135801 30.068 296 192 7 33 320 33 321 2.44e-33 125
Msa0857530 MtrunA17_Chr3g0135801 24.771 218 141 6 125 323 14 227 1.08e-12 67.8
Msa0857530 MtrunA17_Chr8g0382201 27.707 314 187 6 28 321 189 482 1.64e-29 117
Msa0857530 MtrunA17_Chr7g0269701 30.640 297 181 9 36 321 24 306 6.27e-29 113
Msa0857530 MtrunA17_Chr7g0269701 35.567 194 115 6 138 323 17 208 7.01e-20 88.6
Msa0857530 MtrunA17_Chr7g0269701 31.351 185 116 6 48 229 137 313 1.76e-15 75.9
Msa0857530 MtrunA17_Chr4g0000261 25.000 304 202 6 31 321 63 353 2.98e-27 109
Msa0857530 MtrunA17_Chr5g0423111 32.566 304 180 10 29 321 16 305 3.22e-26 106
Msa0857530 MtrunA17_Chr5g0423111 34.118 170 107 4 157 323 37 204 2.56e-17 81.6
Msa0857530 MtrunA17_Chr6g0488341 28.099 242 156 4 81 321 7 231 6.16e-26 103
Msa0857530 MtrunA17_Chr3g0088301 26.144 306 209 7 24 321 83 379 2.25e-25 105
Msa0857530 MtrunA17_Chr1g0195101 29.310 290 182 8 46 325 31 307 9.35e-25 102
Msa0857530 MtrunA17_Chr1g0195101 30.481 187 115 5 48 229 134 310 1.09e-16 79.3
Msa0857530 MtrunA17_Chr8g0393031 24.561 285 199 6 33 309 17 293 1.11e-24 102
Msa0857530 MtrunA17_Chr8g0393031 24.870 193 133 3 141 321 18 210 4.26e-11 63.2
Msa0857530 MtrunA17_Chr6g0463041 27.419 248 133 4 112 321 2 240 2.25e-24 99.8
Msa0857530 MtrunA17_Chr6g0463041 27.273 176 113 5 58 229 83 247 2.95e-12 65.9
Msa0857530 MtrunA17_Chr8g0352031 25.733 307 210 7 24 321 58 355 2.26e-24 101
Msa0857530 MtrunA17_Chr4g0040341 26.774 310 207 8 23 321 61 361 9.01e-24 100
Msa0857530 MtrunA17_Chr2g0328891 27.097 310 206 8 23 321 52 352 1.50e-23 99.4
Msa0857530 MtrunA17_Chr8g0386871 27.425 299 197 7 24 322 310 588 2.28e-23 100
Msa0857530 MtrunA17_Chr4g0028531 26.207 290 182 10 35 311 23 293 2.32e-21 92.8
Msa0857530 MtrunA17_Chr4g0028531 32.000 200 122 6 27 218 106 299 3.12e-13 69.3
Msa0857530 MtrunA17_Chr5g0431531 26.804 291 189 9 34 318 39 311 3.21e-21 92.4
Msa0857530 MtrunA17_Chr5g0431531 30.811 185 119 3 142 325 40 216 1.26e-19 87.8
Msa0857530 MtrunA17_Chr5g0431531 33.537 164 100 3 75 233 167 326 1.74e-14 73.2
Msa0857530 MtrunA17_Chr1g0196921 23.203 306 205 5 26 318 6 294 5.50e-21 91.3
Msa0857530 MtrunA17_Chr7g0275411 28.736 261 160 8 81 323 85 337 1.07e-20 91.3
Msa0857530 MtrunA17_Chr8g0372531 30.279 251 150 7 86 321 65 305 4.28e-19 86.3
Msa0857530 MtrunA17_Chr8g0372531 32.571 175 112 3 156 326 29 201 6.03e-19 85.9
Msa0857530 MtrunA17_Chr8g0372531 26.923 208 133 7 33 228 112 312 5.99e-12 65.5
Msa0857530 MtrunA17_Chr6g0463351 26.950 282 179 6 47 321 80 341 8.76e-19 85.9
Msa0857530 MtrunA17_Chr3g0126331 26.056 284 180 5 62 321 110 387 1.28e-18 85.9
Msa0857530 MtrunA17_Chr8g0366791 25.243 309 203 7 28 321 2 297 3.16e-18 83.6
Msa0857530 MtrunA17_Chr8g0366791 32.178 202 122 5 132 322 4 201 3.25e-18 83.6
Msa0857530 MtrunA17_Chr5g0411411 28.713 202 129 5 132 322 4 201 4.08e-18 83.2
Msa0857530 MtrunA17_Chr5g0411411 24.092 303 203 7 33 321 8 297 7.52e-15 73.9
Msa0857530 MtrunA17_Chr1g0201361 24.828 290 182 6 35 323 52 306 6.37e-18 82.8
Msa0857530 MtrunA17_Chr1g0201361 29.592 196 120 4 25 219 123 301 2.69e-16 78.2
Msa0857530 MtrunA17_Chr1g0201361 27.189 217 115 7 114 319 23 207 3.49e-12 66.2
Msa0857530 MtrunA17_Chr8g0383321 27.974 311 179 12 19 323 36 307 3.24e-17 80.9
Msa0857530 MtrunA17_Chr8g0383321 28.713 202 128 4 25 226 124 309 5.02e-16 77.8
Msa0857530 MtrunA17_Chr4g0004571 31.720 186 117 5 140 321 15 194 5.79e-17 80.1
Msa0857530 MtrunA17_Chr4g0004571 28.365 208 137 4 21 227 101 297 2.18e-16 78.6
Msa0857530 MtrunA17_Chr4g0004571 25.430 291 190 9 33 315 15 286 1.16e-13 70.5
Msa0857530 MtrunA17_Chr3g0086811 24.611 321 198 8 33 323 27 333 7.69e-17 80.5
Msa0857530 MtrunA17_Chr3g0086811 24.091 220 144 3 122 318 6 225 3.68e-12 66.6
Msa0857530 MtrunA17_Chr3g0133111 24.390 328 195 13 31 323 3 312 2.90e-16 78.2
Msa0857530 MtrunA17_Chr3g0133111 22.222 216 153 3 14 221 101 309 1.98e-11 63.9
Msa0857530 MtrunA17_Chr6g0455381 23.552 259 171 5 82 323 60 308 5.52e-16 77.4
Msa0857530 MtrunA17_Chr6g0455381 30.168 179 109 9 124 294 4 174 6.31e-13 68.6
Msa0857530 MtrunA17_Chr2g0331771 30.968 155 101 2 49 202 264 413 7.40e-16 77.8
Msa0857530 MtrunA17_Chr7g0219891 28.272 191 115 7 145 318 122 307 3.01e-15 75.1
Msa0857530 MtrunA17_Chr7g0219891 27.586 203 131 7 121 314 3 198 7.91e-13 68.2
Msa0857530 MtrunA17_Chr4g0051841 27.717 184 117 4 139 315 27 201 1.10e-14 73.6
Msa0857530 MtrunA17_Chr4g0008061 24.306 288 195 7 40 318 21 294 1.29e-14 73.2
Msa0857530 MtrunA17_Chr1g0196161 30.108 186 112 5 40 221 3 174 3.73e-13 67.0
Msa0857530 MtrunA17_Chr1g0196161 25.862 174 127 2 147 320 3 174 4.46e-11 61.2
Msa0857530 MtrunA17_Chr2g0293621 24.265 272 187 7 59 318 52 316 1.03e-12 67.8
Msa0857530 MtrunA17_Chr7g0241521 22.635 296 206 7 40 326 23 304 1.18e-12 67.4
Msa0857530 MtrunA17_Chr5g0407451 25.698 179 123 3 137 315 19 187 2.17e-12 66.6
Msa0857530 MtrunA17_Chr6g0461981 27.751 209 132 8 118 317 37 235 2.86e-12 66.6
Msa0857530 MtrunA17_Chr8g0367641 21.148 331 204 11 31 323 3 314 3.19e-11 63.5
Msa0857530 MtrunA17_Chr3g0103681 24.104 307 209 7 25 321 6 298 3.39e-11 63.2
Msa0857530 MtrunA17_Chr5g0436571 21.190 269 184 6 76 317 48 315 3.65e-11 63.5
Msa0857530 MtrunA17_Chr7g0251981 27.586 174 113 5 148 317 90 254 4.37e-11 63.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0857530 AT3G55640.1 70.732 328 94 1 1 326 3 330 2.47e-170 476
Msa0857530 AT3G55640.4 70.732 328 94 1 1 326 3 330 2.47e-170 476
Msa0857530 AT3G53940.1 71.010 307 87 1 20 324 57 363 1.76e-164 463
Msa0857530 AT2G37890.1 63.582 335 111 1 1 324 1 335 9.69e-156 439
Msa0857530 AT3G55640.2 68.800 250 76 1 1 248 3 252 6.26e-122 351
Msa0857530 AT3G55640.2 32.353 204 120 6 127 318 26 223 1.31e-19 87.0
Msa0857530 AT3G55640.3 68.800 250 76 1 1 248 3 252 6.26e-122 351
Msa0857530 AT3G55640.3 32.353 204 120 6 127 318 26 223 1.31e-19 87.0
Msa0857530 AT3G53940.2 67.532 231 73 1 20 248 57 287 4.45e-113 330
Msa0857530 AT3G53940.2 29.358 218 133 4 113 318 50 258 1.55e-19 87.4
Msa0857530 AT4G01100.1 37.459 307 169 6 34 321 42 344 8.85e-61 198
Msa0857530 AT4G01100.1 34.031 191 116 4 136 318 37 225 3.96e-23 98.6
Msa0857530 AT4G01100.2 36.137 321 168 7 34 321 42 358 5.53e-58 191
Msa0857530 AT4G01100.2 32.683 205 114 5 136 318 37 239 2.93e-21 93.6
Msa0857530 AT4G01100.3 36.242 298 167 6 43 321 1 294 1.86e-56 185
Msa0857530 AT5G51050.1 35.974 303 165 9 26 321 215 495 5.32e-47 166
Msa0857530 AT4G26180.1 32.258 310 171 7 32 321 19 309 8.12e-45 156
Msa0857530 AT4G32400.1 35.473 296 171 7 30 323 110 387 1.26e-43 154
Msa0857530 AT4G32400.1 31.163 215 128 6 20 228 191 391 2.54e-21 94.0
Msa0857530 AT5G61810.2 32.423 293 170 7 34 322 65 333 7.99e-42 148
Msa0857530 AT5G61810.2 29.897 194 124 4 27 220 149 330 3.43e-19 87.4
Msa0857530 AT5G61810.1 32.423 293 170 7 34 322 208 476 1.30e-40 148
Msa0857530 AT5G61810.1 29.897 194 124 4 27 220 292 473 9.98e-19 87.0
Msa0857530 AT1G14560.1 32.203 295 164 8 45 318 38 317 1.66e-40 145
Msa0857530 AT1G14560.1 29.646 226 131 7 16 223 105 320 2.52e-21 93.2
Msa0857530 AT1G14560.1 30.435 184 114 4 153 323 39 221 1.02e-16 80.1
Msa0857530 AT5G48970.1 31.975 319 184 9 36 325 24 338 3.85e-40 144
Msa0857530 AT3G21390.1 31.596 307 180 7 36 315 21 324 7.12e-40 143
Msa0857530 AT3G21390.1 29.592 196 118 5 139 318 17 208 5.21e-19 86.7
Msa0857530 AT3G21390.2 31.596 307 180 7 36 315 43 346 7.13e-40 144
Msa0857530 AT3G21390.2 29.688 192 115 5 143 318 43 230 5.40e-19 87.0
Msa0857530 AT5G01500.1 32.258 279 169 5 45 322 130 389 9.22e-40 144
Msa0857530 AT3G51870.1 32.746 284 161 8 45 322 102 361 1.29e-39 144
Msa0857530 AT3G51870.1 29.609 179 108 6 153 323 103 271 1.69e-12 68.2
Msa0857530 AT4G26180.2 31.507 292 161 7 32 303 19 291 5.22e-39 140
Msa0857530 AT4G26180.2 30.729 192 117 5 140 318 20 208 1.30e-19 87.8
Msa0857530 AT5G64970.1 30.573 314 178 7 28 321 129 422 1.48e-35 134
Msa0857530 AT5G48970.2 33.333 264 152 7 82 325 8 267 3.23e-35 129
Msa0857530 AT5G48970.2 32.886 149 92 4 179 323 3 147 3.12e-17 80.5
Msa0857530 AT5G07320.1 32.404 287 160 10 43 322 218 477 3.37e-35 133
Msa0857530 AT5G07320.1 32.821 195 117 5 27 220 293 474 4.30e-19 88.2
Msa0857530 AT1G14560.2 31.429 280 156 8 45 303 38 302 1.13e-34 129
Msa0857530 AT1G14560.2 30.435 184 114 4 153 323 39 221 7.58e-17 80.1
Msa0857530 AT1G14560.2 27.536 207 123 6 16 204 105 302 8.03e-14 71.2
Msa0857530 AT5G64970.2 30.619 307 173 7 35 321 12 298 1.24e-34 128
Msa0857530 AT5G56450.1 29.245 318 201 9 20 321 16 325 8.25e-33 124
Msa0857530 AT5G56450.1 26.282 156 110 2 174 325 79 233 2.26e-13 70.5
Msa0857530 AT1G78180.1 30.422 332 184 7 10 321 111 415 3.17e-31 122
Msa0857530 AT1G14560.3 34.649 228 118 7 112 318 2 219 1.87e-30 115
Msa0857530 AT1G14560.3 29.646 226 131 7 16 223 7 222 5.05e-22 93.2
Msa0857530 AT5G64970.3 30.068 296 167 7 28 303 129 404 8.91e-30 117
Msa0857530 AT4G11440.1 29.010 293 184 6 35 322 331 604 1.58e-26 110
Msa0857530 AT4G11440.2 29.010 293 184 6 35 322 331 604 1.58e-26 110
Msa0857530 AT3G08580.2 26.846 298 200 7 33 321 83 371 1.44e-25 105
Msa0857530 AT3G08580.1 26.846 298 200 7 33 321 83 371 1.44e-25 105
Msa0857530 AT3G20240.1 24.756 307 205 7 33 326 51 344 3.83e-25 103
Msa0857530 AT1G07030.1 28.374 289 188 6 34 318 40 313 4.13e-25 103
Msa0857530 AT1G07030.1 34.756 164 94 4 75 231 168 325 2.26e-16 79.0
Msa0857530 AT1G07030.1 26.667 210 142 6 120 325 16 217 1.45e-14 73.9
Msa0857530 AT4G27940.1 29.231 260 160 5 80 321 154 407 9.34e-25 103
Msa0857530 AT2G30160.1 27.425 299 195 7 34 325 42 325 1.18e-24 102
Msa0857530 AT1G25380.1 30.742 283 172 8 46 317 33 302 3.07e-24 101
Msa0857530 AT1G25380.1 28.846 208 131 6 32 229 119 319 1.96e-17 82.4
Msa0857530 AT1G25380.2 30.742 283 172 8 46 317 33 302 3.07e-24 101
Msa0857530 AT1G25380.2 28.846 208 131 6 32 229 119 319 1.96e-17 82.4
Msa0857530 AT4G28390.1 25.879 313 213 8 19 321 66 369 3.15e-24 102
Msa0857530 AT4G28390.2 25.879 313 213 8 19 321 66 369 3.15e-24 102
Msa0857530 AT5G13490.1 25.839 298 203 7 33 321 87 375 8.72e-24 100
Msa0857530 AT5G13490.2 25.839 298 203 7 33 321 87 375 8.72e-24 100
Msa0857530 AT5G01340.1 25.083 303 195 8 20 311 8 289 2.55e-21 92.8
Msa0857530 AT1G34065.2 29.316 307 180 11 19 323 59 330 7.24e-21 92.0
Msa0857530 AT1G34065.2 29.469 207 127 5 25 230 147 335 1.40e-17 82.8
Msa0857530 AT1G34065.2 26.697 221 112 6 120 319 40 231 5.58e-13 69.3
Msa0857530 AT1G34065.1 29.545 308 178 13 19 323 66 337 7.93e-21 92.0
Msa0857530 AT1G34065.1 29.469 207 127 5 25 230 154 342 1.86e-17 82.4
Msa0857530 AT1G34065.1 26.697 221 112 6 120 319 47 238 6.44e-13 68.9
Msa0857530 AT2G47490.1 27.869 305 202 8 24 321 7 300 1.70e-20 90.5
Msa0857530 AT2G47490.1 35.057 174 102 5 157 323 33 202 2.21e-15 75.9
Msa0857530 AT2G47490.1 28.947 190 123 7 48 233 131 312 7.80e-15 74.3
Msa0857530 AT5G66380.1 28.990 307 189 10 36 326 12 305 4.16e-20 89.4
Msa0857530 AT5G17400.1 24.476 286 200 6 32 309 12 289 6.66e-19 85.9
Msa0857530 AT1G14140.1 24.262 305 200 7 30 320 12 299 4.11e-18 83.6
Msa0857530 AT5G46800.2 25.325 308 196 7 33 321 7 299 1.36e-17 82.0
Msa0857530 AT5G46800.2 29.208 202 129 3 135 322 2 203 1.76e-17 82.0
Msa0857530 AT5G46800.3 25.325 308 196 7 33 321 7 299 1.36e-17 82.0
Msa0857530 AT5G46800.3 29.208 202 129 3 135 322 2 203 1.76e-17 82.0
Msa0857530 AT5G46800.1 25.325 308 196 7 33 321 7 299 1.36e-17 82.0
Msa0857530 AT5G46800.1 29.208 202 129 3 135 322 2 203 1.76e-17 82.0
Msa0857530 AT1G79900.1 30.256 195 119 5 37 229 112 291 8.76e-17 79.7
Msa0857530 AT2G33820.1 26.282 312 198 11 26 320 10 306 2.38e-16 79.0
Msa0857530 AT5G58970.1 26.115 314 195 9 24 321 6 298 5.92e-16 77.4
Msa0857530 AT4G39460.2 29.808 208 122 5 25 228 130 317 6.66e-16 77.8
Msa0857530 AT4G39460.2 27.797 295 169 12 34 323 58 313 1.01e-15 77.0
Msa0857530 AT4G39460.1 29.808 208 122 5 25 228 130 317 6.66e-16 77.8
Msa0857530 AT4G39460.1 27.797 295 169 12 34 323 58 313 1.01e-15 77.0
Msa0857530 AT4G39460.3 29.808 208 122 5 25 228 130 317 6.66e-16 77.8
Msa0857530 AT4G39460.3 27.797 295 169 12 34 323 58 313 1.01e-15 77.0
Msa0857530 AT2G46320.1 26.848 257 156 7 81 318 109 352 2.15e-15 76.6
Msa0857530 AT1G74240.1 24.545 330 208 6 16 318 18 333 5.71e-15 75.5
Msa0857530 AT5G42130.1 24.549 277 187 5 50 321 134 393 1.12e-14 74.7
Msa0857530 AT3G54110.1 23.208 293 204 6 40 324 21 300 1.74e-14 73.2
Msa0857530 AT3G54110.1 24.757 206 140 3 16 221 106 296 3.39e-11 63.5
Msa0857530 AT2G46320.3 26.482 253 154 7 85 318 14 253 2.44e-14 72.4
Msa0857530 AT2G46320.2 26.482 253 154 7 85 318 14 253 2.44e-14 72.4
Msa0857530 AT2G46320.5 26.482 253 154 7 85 318 14 253 2.44e-14 72.4
Msa0857530 AT4G03115.5 26.425 193 121 4 33 221 62 237 4.27e-14 71.2
Msa0857530 AT4G03115.5 23.243 185 137 2 134 318 56 235 4.46e-12 65.5
Msa0857530 AT4G03115.6 26.425 193 121 4 33 221 70 245 4.40e-14 71.2
Msa0857530 AT4G03115.6 21.429 238 174 3 81 318 19 243 3.94e-12 65.9
Msa0857530 AT4G03115.1 26.425 193 121 4 33 221 133 308 6.24e-14 71.6
Msa0857530 AT4G03115.1 21.382 304 221 5 15 318 21 306 7.82e-14 71.6
Msa0857530 AT2G33820.3 25.625 320 198 12 26 320 10 314 8.70e-14 71.6
Msa0857530 AT4G03115.3 26.425 193 121 4 33 221 165 340 1.24e-13 71.2
Msa0857530 AT4G03115.3 21.382 304 221 5 15 318 53 338 1.30e-13 71.2
Msa0857530 AT5G09470.1 25.837 209 145 3 14 219 128 329 2.22e-13 70.5
Msa0857530 AT2G22500.1 22.884 319 197 9 37 323 9 310 2.28e-13 70.1
Msa0857530 AT3G48850.1 27.128 188 124 5 142 324 72 251 3.39e-13 70.1
Msa0857530 AT5G15640.1 28.500 200 119 6 142 322 126 320 8.79e-13 68.6
Msa0857530 AT5G15640.2 28.500 200 119 6 142 322 119 313 9.02e-13 68.6
Msa0857530 AT4G24570.1 21.429 322 212 7 31 323 3 312 1.21e-12 68.2
Msa0857530 AT2G17270.1 24.713 174 123 2 142 315 23 188 2.05e-12 67.4
Msa0857530 AT5G14040.1 28.736 174 111 5 148 317 90 254 2.69e-11 64.3
Msa0857530 AT2G33820.2 25.424 177 131 1 41 216 43 219 2.82e-11 63.2
Msa0857530 AT1G74240.2 24.101 278 172 5 68 318 20 285 5.33e-11 63.2

Find 140 sgRNAs with CRISPR-Local

Find 302 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTGGCTTGTGGCAGTCTTTC+AGG 0.123605 5_4:+53672986 Msa0857530:CDS
TTCTGATGTGTGGTGGAATT+TGG 0.155049 5_4:-53670547 None:intergenic
TAATATTAGGCTGTTACTTA+TGG 0.183522 5_4:+53674913 Msa0857530:three_prime_UTR
TGCTTCAAGAGGAGTGTTTA+AGG 0.208154 5_4:-53670629 None:intergenic
CTTGAACAACATTTAATATT+AGG 0.219324 5_4:+53674900 Msa0857530:three_prime_UTR
GAAGAAGATAGGGGTAAAAT+TGG 0.225505 5_4:+53670821 Msa0857530:five_prime_UTR
AAGGACTCTGGATTTGTTAT+AGG 0.228760 5_4:+53675228 Msa0857530:three_prime_UTR
TAATCCATGAAGAGGGGTTT+AGG 0.243240 5_4:+53672031 Msa0857530:CDS
TCTGATGTGTGGTGGAATTT+GGG 0.266119 5_4:-53670546 None:intergenic
GAGAAGCTGATTGCTATATT+TGG 0.270991 5_4:-53672787 None:intergenic
ATAGGGGTAAAATTGGAATT+TGG 0.273103 5_4:+53670828 Msa0857530:five_prime_UTR
GGGATTACTCGGCCTTTATA+AGG 0.273893 5_4:+53672652 Msa0857530:CDS
AAAATAGAGAAGAAGAAGAT+AGG 0.303818 5_4:+53670810 Msa0857530:five_prime_UTR
TCTGACAAAATTCTTCAAAT+AGG 0.306711 5_4:+53675301 Msa0857530:three_prime_UTR
CTTTGAGGAAAGCGAGTATA+TGG 0.320572 5_4:+53671992 Msa0857530:CDS
AATATTAGGCTGTTACTTAT+GGG 0.322912 5_4:+53674914 Msa0857530:three_prime_UTR
ATGAAAGCTTGCGATCGTTT+TGG 0.327150 5_4:+53672815 Msa0857530:CDS
AATCCATGAAGAGGGGTTTA+GGG 0.337988 5_4:+53672032 Msa0857530:CDS
TTTACTTACTATAGAGGTAT+TGG 0.338091 5_4:+53672599 Msa0857530:CDS
TTCAACTGTTGTTGTTAGTC+TGG 0.353204 5_4:+53672967 Msa0857530:CDS
ATTCTAATGTTGCAACTTTG+AGG 0.359407 5_4:+53671977 Msa0857530:CDS
AAGCCCTAAACCCCTCTTCA+TGG 0.361238 5_4:-53672035 None:intergenic
TGTGGTGGAATTTGGGGTTA+AGG 0.361792 5_4:-53670539 None:intergenic
AAATAGAGAAGAAGAAGATA+GGG 0.362728 5_4:+53670811 Msa0857530:five_prime_UTR
GGCACAACCTTATAGTATTC+AGG 0.364759 5_4:-53674626 None:intergenic
GTGGTGGAATTTGGGGTTAA+GGG 0.367067 5_4:-53670538 None:intergenic
TTTGTTGGTGGTGGGTTGGC+AGG 0.370802 5_4:+53672294 Msa0857530:CDS
AGGACTCTGGATTTGTTATA+GGG 0.385533 5_4:+53675229 Msa0857530:three_prime_UTR
AATAACAGAAAGTGGTGTTA+AGG 0.391872 5_4:+53670786 Msa0857530:five_prime_UTR
CGATCGCAAGCTTTCATATA+CGG 0.396542 5_4:-53672809 None:intergenic
TTTCCTAGATTCTCATGGTT+GGG 0.404016 5_4:+53674829 Msa0857530:three_prime_UTR
TATCATTGCTATAGGAAGAA+TGG 0.405778 5_4:-53675099 None:intergenic
CTCGGCCTTTATAAGGGACT+TGG 0.408288 5_4:+53672659 Msa0857530:CDS
TCAGGCATTGCATCATCAAC+AGG 0.416081 5_4:+53673004 Msa0857530:CDS
ATGGTGCACAACACTGCAAC+GGG 0.419445 5_4:-53675056 None:intergenic
AAGTTACTTATTCATGCAAA+AGG 0.422848 5_4:+53674766 Msa0857530:three_prime_UTR
AAGAACGCGGCTTGCTGCAC+AGG 0.423096 5_4:+53672356 Msa0857530:CDS
CTTCTCGCCGGAGGAGTTGC+CGG 0.423493 5_4:+53670952 Msa0857530:CDS
ACAAACAATTGTCAAGGAAG+AGG 0.426240 5_4:+53672631 Msa0857530:CDS
GCTTCAAGAGGAGTGTTTAA+GGG 0.431637 5_4:-53670628 None:intergenic
GATTTCACAAGTGCATTTGA+AGG 0.432349 5_4:+53675025 Msa0857530:three_prime_UTR
AACTGCAACTCAATGCCTTA+AGG 0.436798 5_4:+53674997 Msa0857530:three_prime_UTR
GGATTACTCGGCCTTTATAA+GGG 0.437307 5_4:+53672653 Msa0857530:CDS
ATAACAGAAAGTGGTGTTAA+GGG 0.438835 5_4:+53670787 Msa0857530:five_prime_UTR
TAGTTCCAAGTCCCTTATAA+AGG 0.439391 5_4:-53672664 None:intergenic
ATGATTACACCCATCAACTT+TGG 0.439933 5_4:+53674715 Msa0857530:exon
ATTTCCTAGATTCTCATGGT+TGG 0.444299 5_4:+53674828 Msa0857530:three_prime_UTR
AAAACGGTAGCGTATTAAGA+AGG 0.449560 5_4:-53670655 None:intergenic
TTGTGAAATCTCTCTCCTTA+AGG 0.451296 5_4:-53675012 None:intergenic
TAACGGTGGACGGTGGTGTT+CGG 0.453198 5_4:+53670878 Msa0857530:CDS
GCACAACACTGCAACGGGAC+TGG 0.455922 5_4:-53675051 None:intergenic
CAACCACCGCCGCAACAGAT+TGG 0.456851 5_4:+53670916 Msa0857530:CDS
GTTCCAATCTGTTGCGGCGG+TGG 0.457668 5_4:-53670919 None:intergenic
TAAAAGTTAACAGAAGAGTA+AGG 0.459944 5_4:-53672096 None:intergenic
TCAATTTCAATAACAGAAAG+TGG 0.465691 5_4:+53670778 Msa0857530:five_prime_UTR
TGCTACATCTACTTATCCCT+TGG 0.467252 5_4:+53672326 Msa0857530:CDS
ATCATTGCTATAGGAAGAAT+GGG 0.467323 5_4:-53675098 None:intergenic
GTACATTCAAGCATATATTC+CGG 0.468396 5_4:+53674567 Msa0857530:CDS
TTCAAGAATAATCCATGAAG+AGG 0.469893 5_4:+53672023 Msa0857530:CDS
TGGAGATGCAAACGGAAGCT+AGG 0.470661 5_4:+53670848 Msa0857530:exon
TGGTGCTAATGCAGACTGTT+GGG 0.472674 5_4:+53672764 Msa0857530:intron
AATCGATAAATATAACTTCA+CGG 0.473205 5_4:-53674796 None:intergenic
CATGTAACTATCATTGCTAT+AGG 0.473503 5_4:-53675107 None:intergenic
ATATGCAGCAACGTTTCCAT+TGG 0.474353 5_4:+53674472 Msa0857530:intron
AAATTCATTATCAAGGACTC+TGG 0.476399 5_4:+53675216 Msa0857530:three_prime_UTR
TTGCCCAACCATGAGAATCT+AGG 0.477342 5_4:-53674832 None:intergenic
CAGGTAAAATTCCTCTGTAA+AGG 0.481174 5_4:-53674607 None:intergenic
GTGTACAATACAGGTCTCTT+TGG 0.487805 5_4:+53674545 Msa0857530:CDS
CTGGTGCTAATGCAGACTGT+TGG 0.488868 5_4:+53672763 Msa0857530:intron
TTGGAATTTGGAGATGCAAA+CGG 0.491470 5_4:+53670840 Msa0857530:exon
CAAAGCTCCGGCAACTCCTC+CGG 0.494245 5_4:-53670959 None:intergenic
TGGTGGAATTTGGGGTTAAG+GGG 0.494385 5_4:-53670537 None:intergenic
CAAACAATTGTCAAGGAAGA+GGG 0.494902 5_4:+53672632 Msa0857530:CDS
CGAGCGCGTGTGTACAATAC+AGG 0.494967 5_4:+53674536 Msa0857530:CDS
AACCATCTTCAGTGTCTCAT+AGG 0.501803 5_4:-53674672 None:intergenic
GACCTATGAGACACTGAAGA+TGG 0.501950 5_4:+53674670 Msa0857530:CDS
TCTCTATTACTTTGCAGTTG+CGG 0.504953 5_4:-53672243 None:intergenic
AGATCAGACTCCAAAGTTGA+TGG 0.510404 5_4:-53674725 None:intergenic
AAGTGATAAATTCATTATCA+AGG 0.510487 5_4:+53675209 Msa0857530:three_prime_UTR
CGACGTCGCTTAATAGCAAA+AGG 0.510987 5_4:+53670699 Msa0857530:five_prime_UTR
GCAGTTGCAGCCTTGCTGTA+TGG 0.516744 5_4:-53674980 None:intergenic
TGTTGTTCAAGTGTCTGTAC+AGG 0.520385 5_4:-53674888 None:intergenic
TTCTTATGAGCATTACAAGA+AGG 0.522188 5_4:+53672119 Msa0857530:CDS
AGTTACTTATTCATGCAAAA+GGG 0.528314 5_4:+53674767 Msa0857530:three_prime_UTR
TATAAGGTTGTGCCTGGTGT+AGG 0.529307 5_4:+53674635 Msa0857530:CDS
CTGATGTGTGGTGGAATTTG+GGG 0.530755 5_4:-53670545 None:intergenic
TAACAGAAGAGTAAGGTAAA+CGG 0.531609 5_4:-53672089 None:intergenic
GGAAGCTAGGGTTGGTGTAA+CGG 0.532148 5_4:+53670861 Msa0857530:CDS
CTCCGTCTAACAAGATCCAA+TGG 0.539106 5_4:-53674488 None:intergenic
TCTCATTTCCTAGATTCTCA+TGG 0.539490 5_4:+53674824 Msa0857530:three_prime_UTR
TCAAGAATAATCCATGAAGA+GGG 0.543154 5_4:+53672024 Msa0857530:CDS
ATCTAATGCGGTTGGTTGCA+AGG 0.545109 5_4:-53670586 None:intergenic
ACGATTCGGTTTGTTCAAAA+CGG 0.549474 5_4:-53670671 None:intergenic
AGGGTTGGTGTAACGGTGGA+CGG 0.554866 5_4:+53670868 Msa0857530:CDS
TAAGAAGGGTTTGCTTCAAG+AGG 0.555154 5_4:-53670640 None:intergenic
GGAGATGCAAACGGAAGCTA+GGG 0.555939 5_4:+53670849 Msa0857530:exon
AACAACAACAGTTGAATCAT+CGG 0.558241 5_4:-53672960 None:intergenic
AAACGGTAGCGTATTAAGAA+GGG 0.559225 5_4:-53670654 None:intergenic
GTCAAGGAAGAGGGATTACT+CGG 0.560113 5_4:+53672641 Msa0857530:CDS
ACTATTTCTCAGCTTCTCGC+CGG 0.561608 5_4:+53670940 Msa0857530:CDS
AAGCATATATTCCGGTCAGA+AGG 0.563525 5_4:+53674575 Msa0857530:CDS
TTCCATTGGATCTTGTTAGA+CGG 0.564464 5_4:+53674486 Msa0857530:CDS
GTTTAAGGGATTAAAAGTGT+TGG 0.567117 5_4:-53670614 None:intergenic
CAACGTTGTAGTGCTACTGT+GGG 0.571966 5_4:+53674852 Msa0857530:three_prime_UTR
GGGACTTGGAACTACCCTCT+TGG 0.572235 5_4:+53672673 Msa0857530:CDS
AGTTGATGGGTGTAATCATA+CGG 0.572720 5_4:-53674711 None:intergenic
CCGCGTTCTTACAAGATCCA+AGG 0.576326 5_4:-53672343 None:intergenic
TGCTTTACAAACAATTGTCA+AGG 0.578320 5_4:+53672625 Msa0857530:CDS
AGACGGAGGAAGCAACTTGA+GGG 0.579075 5_4:+53674503 Msa0857530:CDS
AATAGAGAAGAAGAAGATAG+GGG 0.579487 5_4:+53670812 Msa0857530:five_prime_UTR
GATCAGACTCCAAAGTTGAT+GGG 0.580419 5_4:-53674724 None:intergenic
CGCGTTCTTACAAGATCCAA+GGG 0.583255 5_4:-53672342 None:intergenic
GGCCACGCAAACCTTCTGAC+CGG 0.592865 5_4:-53674586 None:intergenic
TAGACGGAGGAAGCAACTTG+AGG 0.593462 5_4:+53674502 Msa0857530:CDS
CATGGTGCACAACACTGCAA+CGG 0.595976 5_4:-53675057 None:intergenic
TCACTTCTCAAAAGATTACA+TGG 0.596401 5_4:-53675075 None:intergenic
GCAACGTTGTAGTGCTACTG+TGG 0.600874 5_4:+53674851 Msa0857530:three_prime_UTR
ATTTCTCAGCTTCTCGCCGG+AGG 0.601058 5_4:+53670943 Msa0857530:CDS
GAATACTATAAGGTTGTGCC+TGG 0.602847 5_4:+53674629 Msa0857530:CDS
ATGCAAACGGAAGCTAGGGT+TGG 0.605982 5_4:+53670853 Msa0857530:CDS
CCTTGGATCTTGTAAGAACG+CGG 0.611552 5_4:+53672343 Msa0857530:CDS
TGGTAGTGATCTAATGCGGT+TGG 0.614102 5_4:-53670594 None:intergenic
TTCCGGTCAGAAGGTTTGCG+TGG 0.617988 5_4:+53674584 Msa0857530:CDS
TACGGGCCAAATGAAAACAA+TGG 0.624377 5_4:-53675182 None:intergenic
CATTGGATCTTGTTAGACGG+AGG 0.625988 5_4:+53674489 Msa0857530:CDS
AATGAAATTACCATACAGCA+AGG 0.633061 5_4:+53674970 Msa0857530:three_prime_UTR
GAAATAGTTCCAATCTGTTG+CGG 0.634856 5_4:-53670925 None:intergenic
GGTTTGCGTGGCCTTTACAG+AGG 0.639547 5_4:+53674596 Msa0857530:CDS
CAAGAATAATCCATGAAGAG+GGG 0.640978 5_4:+53672025 Msa0857530:CDS
GTTGTTGTTAGTCTGGCTTG+TGG 0.646435 5_4:+53672974 Msa0857530:CDS
AGCTAGGGTTGGTGTAACGG+TGG 0.654947 5_4:+53670864 Msa0857530:CDS
ACGGAGGAAGCAACTTGAGG+GGG 0.659118 5_4:+53674505 Msa0857530:CDS
GTTGGTGTAACGGTGGACGG+TGG 0.659448 5_4:+53670871 Msa0857530:CDS
GACGGAGGAAGCAACTTGAG+GGG 0.659793 5_4:+53674504 Msa0857530:CDS
ATAGTTCCAATCTGTTGCGG+CGG 0.660860 5_4:-53670922 None:intergenic
ATAAAACAAATGCCTACACC+AGG 0.667613 5_4:-53674647 None:intergenic
AGGATTGTGAGTCTAGCAAG+TGG 0.683649 5_4:-53671000 None:intergenic
ATAATAACATCATACCAAGA+GGG 0.684442 5_4:-53672687 None:intergenic
AACGTTGTAGTGCTACTGTG+GGG 0.690126 5_4:+53674853 Msa0857530:three_prime_UTR
GTGTTGGTAGTGATCTAATG+CGG 0.786066 5_4:-53670598 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTTATTCATTTTGTTAT+TGG + chr5_4:53671076-53671095 Msa0857530:intron 10.0%
!!! TTTTTATTCATTTTGTTATT+GGG + chr5_4:53671077-53671096 Msa0857530:intron 10.0%
!!! ATATTGATATTGATAATATA+TGG - chr5_4:53673908-53673927 None:intergenic 10.0%
!! CAAAAAAAAAAAAAAATGAA+AGG + chr5_4:53674945-53674964 Msa0857530:three_prime_UTR 10.0%
!!! TTAGTAATTTTGTTGTATTT+TGG + chr5_4:53671102-53671121 Msa0857530:intron 15.0%
!!! TTTTGAATTGAGATAATTTT+GGG + chr5_4:53671196-53671215 Msa0857530:intron 15.0%
!! TTATGAAAATAAGGTAAAAA+TGG + chr5_4:53671426-53671445 Msa0857530:intron 15.0%
!!! ATAATAATTCTAGAAAACTA+AGG - chr5_4:53671913-53671932 None:intergenic 15.0%
!!! TTCTTCAATTTTTATTTAAC+TGG - chr5_4:53673260-53673279 None:intergenic 15.0%
!! ATTATCAATATCAATATCAA+TGG + chr5_4:53673911-53673930 Msa0857530:intron 15.0%
!! TAAAAATGTTGTCAATTTAT+AGG + chr5_4:53675269-53675288 Msa0857530:three_prime_UTR 15.0%
!! AAAAATGTTGTCAATTTATA+GGG + chr5_4:53675270-53675289 Msa0857530:three_prime_UTR 15.0%
!!! ATAAATTTTTCACCTGAAAA+AGG - chr5_4:53671023-53671042 None:intergenic 20.0%
!! ACTGTATGAGTTAATTAATT+TGG + chr5_4:53671173-53671192 Msa0857530:intron 20.0%
!!! GTTTTGAATTGAGATAATTT+TGG + chr5_4:53671195-53671214 Msa0857530:intron 20.0%
!!! TTTGAATTGAGATAATTTTG+GGG + chr5_4:53671197-53671216 Msa0857530:intron 20.0%
!! ATAAGTTGTTTATCCAAATA+GGG + chr5_4:53671675-53671694 Msa0857530:intron 20.0%
!!! TTATAATTTTTGCAGATTCA+AGG + chr5_4:53671949-53671968 Msa0857530:intron 20.0%
!!! TATAATTTTTGCAGATTCAA+GGG + chr5_4:53671950-53671969 Msa0857530:intron 20.0%
!! TTTCCAAAATTGAAATTAAG+AGG - chr5_4:53672447-53672466 None:intergenic 20.0%
!! TATGAATATACATGAATTAG+AGG - chr5_4:53672899-53672918 None:intergenic 20.0%
!! AAATTATCAGGAATATGTAT+AGG - chr5_4:53673121-53673140 None:intergenic 20.0%
!! AAATTCAATAGTTTGACTAA+AGG - chr5_4:53673284-53673303 None:intergenic 20.0%
!! TAATAAATTTCCTGAAAAAC+AGG - chr5_4:53673485-53673504 None:intergenic 20.0%
!! CATGTCATAAAATAAAACTT+GGG - chr5_4:53673540-53673559 None:intergenic 20.0%
!! ACATGTCATAAAATAAAACT+TGG - chr5_4:53673541-53673560 None:intergenic 20.0%
!! ATAAATGAAATTGTCAACAT+AGG + chr5_4:53673846-53673865 Msa0857530:intron 20.0%
!!! AACATAATTTGTTATTGAAG+TGG - chr5_4:53674272-53674291 None:intergenic 20.0%
!! TTCAAATATGATTAGATTTC+TGG + chr5_4:53674311-53674330 Msa0857530:intron 20.0%
!!! TATAACATTACTTGATTTGA+TGG + chr5_4:53674364-53674383 Msa0857530:intron 20.0%
!!! AATTTTACCTGAATACTATA+AGG + chr5_4:53674619-53674638 Msa0857530:CDS 20.0%
!! AATCGATAAATATAACTTCA+CGG - chr5_4:53674799-53674818 None:intergenic 20.0%
!! CTTGAACAACATTTAATATT+AGG + chr5_4:53674900-53674919 Msa0857530:three_prime_UTR 20.0%
!! ACAAAAATAAAGAAAAGCAA+AGG - chr5_4:53675137-53675156 None:intergenic 20.0%
!!! TGAATTTATCACTTTTACTA+CGG - chr5_4:53675203-53675222 None:intergenic 20.0%
!! AAGTGATAAATTCATTATCA+AGG + chr5_4:53675209-53675228 Msa0857530:three_prime_UTR 20.0%
! TCAATTTCAATAACAGAAAG+TGG + chr5_4:53670778-53670797 Msa0857530:five_prime_UTR 25.0%
! AAAATAGAGAAGAAGAAGAT+AGG + chr5_4:53670810-53670829 Msa0857530:five_prime_UTR 25.0%
! AAATAGAGAAGAAGAAGATA+GGG + chr5_4:53670811-53670830 Msa0857530:five_prime_UTR 25.0%
! TTAGCGAGTTTATGAAAATA+AGG + chr5_4:53671417-53671436 Msa0857530:intron 25.0%
! AATAAGGTAAAAATGGTATG+TGG + chr5_4:53671433-53671452 Msa0857530:intron 25.0%
! ATAAGGTAAAAATGGTATGT+GGG + chr5_4:53671434-53671453 Msa0857530:intron 25.0%
! GATAAGTTGTTTATCCAAAT+AGG + chr5_4:53671674-53671693 Msa0857530:intron 25.0%
!! TATAATTTTTGTCACTGTGT+TGG + chr5_4:53671815-53671834 Msa0857530:intron 25.0%
! TAAAAGTTAACAGAAGAGTA+AGG - chr5_4:53672099-53672118 None:intergenic 25.0%
! TTACAAGAAGGTAAGAATAT+TGG + chr5_4:53672131-53672150 Msa0857530:intron 25.0%
!! GATCTTTGTATACATTTTGT+TGG + chr5_4:53672279-53672298 Msa0857530:CDS 25.0%
!! CATCCTCTTAATTTCAATTT+TGG + chr5_4:53672441-53672460 Msa0857530:intron 25.0%
!! ACGAATTTTACTTACTATAG+AGG + chr5_4:53672593-53672612 Msa0857530:CDS 25.0%
!! TTTACTTACTATAGAGGTAT+TGG + chr5_4:53672599-53672618 Msa0857530:CDS 25.0%
! ATAATAACATCATACCAAGA+GGG - chr5_4:53672690-53672709 None:intergenic 25.0%
! ACATCAAAAGGTAAATTATC+AGG - chr5_4:53673133-53673152 None:intergenic 25.0%
!! TTTTGATGTTTCTTGCAATT+GGG + chr5_4:53673144-53673163 Msa0857530:intron 25.0%
! AAAGAAGTTAATATCTGTAG+TGG + chr5_4:53673322-53673341 Msa0857530:intron 25.0%
!! TGCCATTTGAAAATTTAGTA+AGG + chr5_4:53673436-53673455 Msa0857530:intron 25.0%
! GCCATTTGAAAATTTAGTAA+GGG + chr5_4:53673437-53673456 Msa0857530:intron 25.0%
!! TCCCTTACTAAATTTTCAAA+TGG - chr5_4:53673441-53673460 None:intergenic 25.0%
!! AATCACAATTTTCTTCGTTT+AGG - chr5_4:53673787-53673806 None:intergenic 25.0%
! TGACAATTTCATTTATCCAT+TGG - chr5_4:53673842-53673861 None:intergenic 25.0%
!! ATATGGTTTTCTTTCTTTGA+AGG - chr5_4:53673891-53673910 None:intergenic 25.0%
! TCAATATCAATATCAATGGA+TGG + chr5_4:53673915-53673934 Msa0857530:intron 25.0%
! AAAACATACTATTGCTGTAT+TGG - chr5_4:53674001-53674020 None:intergenic 25.0%
!!! TATGATTAGATTTCTGGTTT+TGG + chr5_4:53674317-53674336 Msa0857530:intron 25.0%
! AAGTTACTTATTCATGCAAA+AGG + chr5_4:53674766-53674785 Msa0857530:three_prime_UTR 25.0%
! AGTTACTTATTCATGCAAAA+GGG + chr5_4:53674767-53674786 Msa0857530:three_prime_UTR 25.0%
!! TAATATTAGGCTGTTACTTA+TGG + chr5_4:53674913-53674932 Msa0857530:three_prime_UTR 25.0%
!! AATATTAGGCTGTTACTTAT+GGG + chr5_4:53674914-53674933 Msa0857530:three_prime_UTR 25.0%
!!! GAATTTATCACTTTTACTAC+GGG - chr5_4:53675202-53675221 None:intergenic 25.0%
! TCTGACAAAATTCTTCAAAT+AGG + chr5_4:53675301-53675320 Msa0857530:three_prime_UTR 25.0%
! GTTTAAGGGATTAAAAGTGT+TGG - chr5_4:53670617-53670636 None:intergenic 30.0%
! AATAACAGAAAGTGGTGTTA+AGG + chr5_4:53670786-53670805 Msa0857530:five_prime_UTR 30.0%
! ATAACAGAAAGTGGTGTTAA+GGG + chr5_4:53670787-53670806 Msa0857530:five_prime_UTR 30.0%
AATAGAGAAGAAGAAGATAG+GGG + chr5_4:53670812-53670831 Msa0857530:five_prime_UTR 30.0%
ATAGGGGTAAAATTGGAATT+TGG + chr5_4:53670828-53670847 Msa0857530:five_prime_UTR 30.0%
TCATAACTCATAAGCTGTTT+GGG + chr5_4:53671461-53671480 Msa0857530:intron 30.0%
ACTGTTATCATTAGCTATCT+TGG - chr5_4:53671552-53671571 None:intergenic 30.0%
! CTCTCGAATTTCGATAATTT+TGG + chr5_4:53671772-53671791 Msa0857530:intron 30.0%
AACAATGATTGAAAGAGAGA+TGG + chr5_4:53671851-53671870 Msa0857530:intron 30.0%
ATTCTAATGTTGCAACTTTG+AGG + chr5_4:53671977-53671996 Msa0857530:CDS 30.0%
TTCAAGAATAATCCATGAAG+AGG + chr5_4:53672023-53672042 Msa0857530:CDS 30.0%
TCAAGAATAATCCATGAAGA+GGG + chr5_4:53672024-53672043 Msa0857530:CDS 30.0%
TAACAGAAGAGTAAGGTAAA+CGG - chr5_4:53672092-53672111 None:intergenic 30.0%
TTCTTATGAGCATTACAAGA+AGG + chr5_4:53672119-53672138 Msa0857530:CDS 30.0%
! TTGATATGCACTTTTGTTCT+TGG + chr5_4:53672167-53672186 Msa0857530:intron 30.0%
! CTTTGTATACATTTTGTTGG+TGG + chr5_4:53672282-53672301 Msa0857530:CDS 30.0%
TGCTTTACAAACAATTGTCA+AGG + chr5_4:53672625-53672644 Msa0857530:CDS 30.0%
GATAATAACATCATACCAAG+AGG - chr5_4:53672691-53672710 None:intergenic 30.0%
! GGAATATATGCTTTGAGTAA+TGG - chr5_4:53672720-53672739 None:intergenic 30.0%
AAGCATATATTCCTTTCTTG+TGG + chr5_4:53672727-53672746 Msa0857530:intron 30.0%
ATGAATTAGAGGAAAATCAG+TGG - chr5_4:53672888-53672907 None:intergenic 30.0%
AACAACAACAGTTGAATCAT+CGG - chr5_4:53672963-53672982 None:intergenic 30.0%
! TCAACAGGTTAGTTATCAAA+AGG + chr5_4:53673019-53673038 Msa0857530:intron 30.0%
! TCTTGATTGTTGAACTTTTG+AGG + chr5_4:53673087-53673106 Msa0857530:intron 30.0%
CAATTGCAAGAAACATCAAA+AGG - chr5_4:53673145-53673164 None:intergenic 30.0%
! CTTTTGATGTTTCTTGCAAT+TGG + chr5_4:53673143-53673162 Msa0857530:intron 30.0%
TTTGATGTTTCTTGCAATTG+GGG + chr5_4:53673145-53673164 Msa0857530:intron 30.0%
! TTGGGGTTTGTATATTCTTT+TGG + chr5_4:53673162-53673181 Msa0857530:intron 30.0%
ATAAAATAACAACTCCATCC+CGG - chr5_4:53673415-53673434 None:intergenic 30.0%
ATATCAATATCAATGGATGG+TGG + chr5_4:53673918-53673937 Msa0857530:intron 30.0%
TTCTATTGACACTAACTACT+TGG + chr5_4:53673958-53673977 Msa0857530:intron 30.0%
!!! TTTTGGAATTAGTTCTCACT+GGG + chr5_4:53674334-53674353 Msa0857530:intron 30.0%
ATGGTGCATTTCACATAAAA+AGG + chr5_4:53674383-53674402 Msa0857530:intron 30.0%
TGGTGCATTTCACATAAAAA+GGG + chr5_4:53674384-53674403 Msa0857530:intron 30.0%
ATTTCACATAAAAAGGGATC+AGG + chr5_4:53674390-53674409 Msa0857530:intron 30.0%
GTACATTCAAGCATATATTC+CGG + chr5_4:53674567-53674586 Msa0857530:CDS 30.0%
AATGAAATTACCATACAGCA+AGG + chr5_4:53674970-53674989 Msa0857530:three_prime_UTR 30.0%
TCACTTCTCAAAAGATTACA+TGG - chr5_4:53675078-53675097 None:intergenic 30.0%
ATCATTGCTATAGGAAGAAT+GGG - chr5_4:53675101-53675120 None:intergenic 30.0%
TATCATTGCTATAGGAAGAA+TGG - chr5_4:53675102-53675121 None:intergenic 30.0%
CATGTAACTATCATTGCTAT+AGG - chr5_4:53675110-53675129 None:intergenic 30.0%
! TGTAGTCCATTGTTTTCATT+TGG + chr5_4:53675176-53675195 Msa0857530:three_prime_UTR 30.0%
AAATTCATTATCAAGGACTC+TGG + chr5_4:53675216-53675235 Msa0857530:three_prime_UTR 30.0%
! TGTGTTTCTTTTCTGATGTG+TGG - chr5_4:53670560-53670579 None:intergenic 35.0%
AAACGGTAGCGTATTAAGAA+GGG - chr5_4:53670657-53670676 None:intergenic 35.0%
AAAACGGTAGCGTATTAAGA+AGG - chr5_4:53670658-53670677 None:intergenic 35.0%
!! ACGATTCGGTTTGTTCAAAA+CGG - chr5_4:53670674-53670693 None:intergenic 35.0%
GAAGAAGATAGGGGTAAAAT+TGG + chr5_4:53670821-53670840 Msa0857530:five_prime_UTR 35.0%
TTGGAATTTGGAGATGCAAA+CGG + chr5_4:53670840-53670859 Msa0857530:exon 35.0%
GAAATAGTTCCAATCTGTTG+CGG - chr5_4:53670928-53670947 None:intergenic 35.0%
! ACAAGTTTTACTCAAAGCTC+CGG - chr5_4:53670974-53670993 None:intergenic 35.0%
! TAGACTCACAATCCTTTTTC+AGG + chr5_4:53671008-53671027 Msa0857530:CDS 35.0%
!! GATAATTTTGGGGACTGAAT+TGG + chr5_4:53671207-53671226 Msa0857530:intron 35.0%
!! GGTTGTTGCTTATGATTTTG+TGG + chr5_4:53671228-53671247 Msa0857530:intron 35.0%
GTCATAACTCATAAGCTGTT+TGG + chr5_4:53671460-53671479 Msa0857530:intron 35.0%
TGTAAGACTATGACCCTATT+TGG - chr5_4:53671691-53671710 None:intergenic 35.0%
AGTCAATCAAAACATGCACT+AGG + chr5_4:53671742-53671761 Msa0857530:intron 35.0%
! TCAAAACATGCACTAGGTTT+TGG + chr5_4:53671748-53671767 Msa0857530:intron 35.0%
AATGATTGAAAGAGAGATGG+TGG + chr5_4:53671854-53671873 Msa0857530:intron 35.0%
ATGATTGAAAGAGAGATGGT+GGG + chr5_4:53671855-53671874 Msa0857530:intron 35.0%
CAAGAATAATCCATGAAGAG+GGG + chr5_4:53672025-53672044 Msa0857530:CDS 35.0%
! TTTTATACGTGCAGTTTCTG+AGG + chr5_4:53672214-53672233 Msa0857530:intron 35.0%
TCTCTATTACTTTGCAGTTG+CGG - chr5_4:53672246-53672265 None:intergenic 35.0%
!! TGTATACATTTTGTTGGTGG+TGG + chr5_4:53672285-53672304 Msa0857530:CDS 35.0%
!!! GTATACATTTTGTTGGTGGT+GGG + chr5_4:53672286-53672305 Msa0857530:CDS 35.0%
!! TTTTGGAAACTTGCAAGACT+TGG + chr5_4:53672458-53672477 Msa0857530:intron 35.0%
ACAAACAATTGTCAAGGAAG+AGG + chr5_4:53672631-53672650 Msa0857530:CDS 35.0%
CAAACAATTGTCAAGGAAGA+GGG + chr5_4:53672632-53672651 Msa0857530:CDS 35.0%
TAGTTCCAAGTCCCTTATAA+AGG - chr5_4:53672667-53672686 None:intergenic 35.0%
GAGAAGCTGATTGCTATATT+TGG - chr5_4:53672790-53672809 None:intergenic 35.0%
! TTCAACTGTTGTTGTTAGTC+TGG + chr5_4:53672967-53672986 Msa0857530:CDS 35.0%
! TTACCTTTTTCCTACATCTC+TGG + chr5_4:53673188-53673207 Msa0857530:intron 35.0%
!! TCACACTTTTCCTGTTTTTC+AGG + chr5_4:53673472-53673491 Msa0857530:intron 35.0%
CAAGAAATGACCTTATGTGA+CGG - chr5_4:53673587-53673606 None:intergenic 35.0%
ATGAACCTATATCATTCCCT+CGG + chr5_4:53673608-53673627 Msa0857530:intron 35.0%
! TACTTGTTCACATGTTTCTG+AGG + chr5_4:53673721-53673740 Msa0857530:intron 35.0%
TTGCTCATGATAAAAGCCAA+TGG + chr5_4:53673823-53673842 Msa0857530:intron 35.0%
GTTGTCAAATGGACAAGATA+TGG - chr5_4:53674137-53674156 None:intergenic 35.0%
GTCCATTTGACAACAAATTG+CGG + chr5_4:53674143-53674162 Msa0857530:intron 35.0%
CACTGGACAATTACATTTAC+AGG - chr5_4:53674219-53674238 None:intergenic 35.0%
TAAATGTAATTGTCCAGTGC+AGG + chr5_4:53674220-53674239 Msa0857530:intron 35.0%
!!! GTTTTGGAATTAGTTCTCAC+TGG + chr5_4:53674333-53674352 Msa0857530:intron 35.0%
! TTTGGAATTAGTTCTCACTG+GGG + chr5_4:53674335-53674354 Msa0857530:intron 35.0%
TAACAGATGAATTCAACCGT+AGG - chr5_4:53674445-53674464 None:intergenic 35.0%
TTCCATTGGATCTTGTTAGA+CGG + chr5_4:53674486-53674505 Msa0857530:CDS 35.0%
CAGGTAAAATTCCTCTGTAA+AGG - chr5_4:53674610-53674629 None:intergenic 35.0%
ATAAAACAAATGCCTACACC+AGG - chr5_4:53674650-53674669 None:intergenic 35.0%
!! AGTTGATGGGTGTAATCATA+CGG - chr5_4:53674714-53674733 None:intergenic 35.0%
ATGATTACACCCATCAACTT+TGG + chr5_4:53674715-53674734 Msa0857530:exon 35.0%
TCTCATTTCCTAGATTCTCA+TGG + chr5_4:53674824-53674843 Msa0857530:three_prime_UTR 35.0%
ATTTCCTAGATTCTCATGGT+TGG + chr5_4:53674828-53674847 Msa0857530:three_prime_UTR 35.0%
TTTCCTAGATTCTCATGGTT+GGG + chr5_4:53674829-53674848 Msa0857530:three_prime_UTR 35.0%
TTGTGAAATCTCTCTCCTTA+AGG - chr5_4:53675015-53675034 None:intergenic 35.0%
GATTTCACAAGTGCATTTGA+AGG + chr5_4:53675025-53675044 Msa0857530:three_prime_UTR 35.0%
!! AAGGACTCTGGATTTGTTAT+AGG + chr5_4:53675228-53675247 Msa0857530:three_prime_UTR 35.0%
!! AGGACTCTGGATTTGTTATA+GGG + chr5_4:53675229-53675248 Msa0857530:three_prime_UTR 35.0%
! TCTGATGTGTGGTGGAATTT+GGG - chr5_4:53670549-53670568 None:intergenic 40.0%
! TTCTGATGTGTGGTGGAATT+TGG - chr5_4:53670550-53670569 None:intergenic 40.0%
! GTTTCTTTTCTGATGTGTGG+TGG - chr5_4:53670557-53670576 None:intergenic 40.0%
!! GTGTTGGTAGTGATCTAATG+CGG - chr5_4:53670601-53670620 None:intergenic 40.0%
!! GCTTCAAGAGGAGTGTTTAA+GGG - chr5_4:53670631-53670650 None:intergenic 40.0%
!! TGCTTCAAGAGGAGTGTTTA+AGG - chr5_4:53670632-53670651 None:intergenic 40.0%
! TAAGAAGGGTTTGCTTCAAG+AGG - chr5_4:53670643-53670662 None:intergenic 40.0%
TGATTGAAAGAGAGATGGTG+GGG + chr5_4:53671856-53671875 Msa0857530:intron 40.0%
! CTTTGAGGAAAGCGAGTATA+TGG + chr5_4:53671992-53672011 Msa0857530:CDS 40.0%
TAATCCATGAAGAGGGGTTT+AGG + chr5_4:53672031-53672050 Msa0857530:CDS 40.0%
AATCCATGAAGAGGGGTTTA+GGG + chr5_4:53672032-53672051 Msa0857530:CDS 40.0%
!! GGTTTAGGGCTTTTTGGAAA+GGG + chr5_4:53672046-53672065 Msa0857530:CDS 40.0%
TGCTACATCTACTTATCCCT+TGG + chr5_4:53672326-53672345 Msa0857530:CDS 40.0%
GGATTACTCGGCCTTTATAA+GGG + chr5_4:53672653-53672672 Msa0857530:CDS 40.0%
CGATCGCAAGCTTTCATATA+CGG - chr5_4:53672812-53672831 None:intergenic 40.0%
! ATGAAAGCTTGCGATCGTTT+TGG + chr5_4:53672815-53672834 Msa0857530:CDS 40.0%
!! GATCGTTTTGGATGTCAAAC+AGG + chr5_4:53672827-53672846 Msa0857530:CDS 40.0%
AACAGTTGAATCATCGGATC+TGG - chr5_4:53672957-53672976 None:intergenic 40.0%
ATGCCAGAGATGTAGGAAAA+AGG - chr5_4:53673194-53673213 None:intergenic 40.0%
CGTCACATAAGGTCATTTCT+TGG + chr5_4:53673585-53673604 Msa0857530:intron 40.0%
ACATACAGTTGTTGTAGCAG+TGG - chr5_4:53674028-53674047 None:intergenic 40.0%
GCTACAACAACTGTATGTTC+AGG + chr5_4:53674030-53674049 Msa0857530:intron 40.0%
!! CTCCGCAATTTGTTGTCAAA+TGG - chr5_4:53674148-53674167 None:intergenic 40.0%
TAAGAAAGACAGCACTACAC+AGG - chr5_4:53674189-53674208 None:intergenic 40.0%
TGTGTAGTGCTGTCTTTCTT+AGG + chr5_4:53674188-53674207 Msa0857530:intron 40.0%
CTTGTAGACTAGAATGCCTA+CGG + chr5_4:53674426-53674445 Msa0857530:intron 40.0%
ATATGCAGCAACGTTTCCAT+TGG + chr5_4:53674472-53674491 Msa0857530:intron 40.0%
GTGTACAATACAGGTCTCTT+TGG + chr5_4:53674545-53674564 Msa0857530:CDS 40.0%
AAGCATATATTCCGGTCAGA+AGG + chr5_4:53674575-53674594 Msa0857530:CDS 40.0%
GGCACAACCTTATAGTATTC+AGG - chr5_4:53674629-53674648 None:intergenic 40.0%
GAATACTATAAGGTTGTGCC+TGG + chr5_4:53674629-53674648 Msa0857530:CDS 40.0%
AACCATCTTCAGTGTCTCAT+AGG - chr5_4:53674675-53674694 None:intergenic 40.0%
!!! GACACTGAAGATGGTTTTAG+CGG + chr5_4:53674679-53674698 Msa0857530:CDS 40.0%
! GATCAGACTCCAAAGTTGAT+GGG - chr5_4:53674727-53674746 None:intergenic 40.0%
AGATCAGACTCCAAAGTTGA+TGG - chr5_4:53674728-53674747 None:intergenic 40.0%
TGTTGTTCAAGTGTCTGTAC+AGG - chr5_4:53674891-53674910 None:intergenic 40.0%
AACTGCAACTCAATGCCTTA+AGG + chr5_4:53674997-53675016 Msa0857530:three_prime_UTR 40.0%
TACGGGCCAAATGAAAACAA+TGG - chr5_4:53675185-53675204 None:intergenic 40.0%
! TGTGGTGGAATTTGGGGTTA+AGG - chr5_4:53670542-53670561 None:intergenic 45.0%
! CTGATGTGTGGTGGAATTTG+GGG - chr5_4:53670548-53670567 None:intergenic 45.0%
! ATCTAATGCGGTTGGTTGCA+AGG - chr5_4:53670589-53670608 None:intergenic 45.0%
! TGGTAGTGATCTAATGCGGT+TGG - chr5_4:53670597-53670616 None:intergenic 45.0%
!!! GCGACGTCGTTTTTACGATT+CGG - chr5_4:53670688-53670707 None:intergenic 45.0%
CGACGTCGCTTAATAGCAAA+AGG + chr5_4:53670699-53670718 Msa0857530:five_prime_UTR 45.0%
ATAGTTCCAATCTGTTGCGG+CGG - chr5_4:53670925-53670944 None:intergenic 45.0%
! ACTATTTCTCAGCTTCTCGC+CGG + chr5_4:53670940-53670959 Msa0857530:CDS 45.0%
AGGATTGTGAGTCTAGCAAG+TGG - chr5_4:53671003-53671022 None:intergenic 45.0%
! GATTGAAAGAGAGATGGTGG+GGG + chr5_4:53671857-53671876 Msa0857530:intron 45.0%
!! AAGAGGGGTTTAGGGCTTTT+TGG + chr5_4:53672040-53672059 Msa0857530:CDS 45.0%
!! GGGTTTAGGGCTTTTTGGAA+AGG + chr5_4:53672045-53672064 Msa0857530:CDS 45.0%
!!! ACATTTTGTTGGTGGTGGGT+TGG + chr5_4:53672290-53672309 Msa0857530:CDS 45.0%
CGCGTTCTTACAAGATCCAA+GGG - chr5_4:53672345-53672364 None:intergenic 45.0%
CCTTGGATCTTGTAAGAACG+CGG + chr5_4:53672343-53672362 Msa0857530:CDS 45.0%
GTCAAGGAAGAGGGATTACT+CGG + chr5_4:53672641-53672660 Msa0857530:CDS 45.0%
GGGATTACTCGGCCTTTATA+AGG + chr5_4:53672652-53672671 Msa0857530:CDS 45.0%
AGTGGCTAAGTCCACAAGAA+AGG - chr5_4:53672741-53672760 None:intergenic 45.0%
TTGTGGACTTAGCCACTTAC+TGG + chr5_4:53672744-53672763 Msa0857530:intron 45.0%
TCTGCATTAGCACCAGTAAG+TGG - chr5_4:53672759-53672778 None:intergenic 45.0%
! TGGTGCTAATGCAGACTGTT+GGG + chr5_4:53672764-53672783 Msa0857530:intron 45.0%
! GTTGTTGTTAGTCTGGCTTG+TGG + chr5_4:53672974-53672993 Msa0857530:CDS 45.0%
! TCAGGCATTGCATCATCAAC+AGG + chr5_4:53673004-53673023 Msa0857530:CDS 45.0%
ACACTTGATGCCAGAGATGT+AGG - chr5_4:53673201-53673220 None:intergenic 45.0%
GGAATCAGCTGCATAACTTG+GGG - chr5_4:53673566-53673585 None:intergenic 45.0%
CGGAATCAGCTGCATAACTT+GGG - chr5_4:53673567-53673586 None:intergenic 45.0%
ACGGAATCAGCTGCATAACT+TGG - chr5_4:53673568-53673587 None:intergenic 45.0%
GGTAACCGAGGGAATGATAT+AGG - chr5_4:53673616-53673635 None:intergenic 45.0%
! CTCTCACATTTGGTAACCGA+GGG - chr5_4:53673627-53673646 None:intergenic 45.0%
AAGAGGACACCTCTCACATT+TGG - chr5_4:53673637-53673656 None:intergenic 45.0%
! GTGAGAAGCATACCTCAAAG+AGG - chr5_4:53673654-53673673 None:intergenic 45.0%
TTGAGGTATGCTTCTCACCT+AGG + chr5_4:53673656-53673675 Msa0857530:intron 45.0%
ACATCAGGTGAAGGTAACCT+AGG - chr5_4:53673676-53673695 None:intergenic 45.0%
GGTTACCTTCACCTGATGTT+TGG + chr5_4:53673677-53673696 Msa0857530:intron 45.0%
ACCTTCACCTGATGTTTGGA+CGG + chr5_4:53673681-53673700 Msa0857530:intron 45.0%
CTGATATCCGTCCAAACATC+AGG - chr5_4:53673691-53673710 None:intergenic 45.0%
CAACAACTGTATGTTCAGGC+AGG + chr5_4:53674034-53674053 Msa0857530:intron 45.0%
CTCCGTCTAACAAGATCCAA+TGG - chr5_4:53674491-53674510 None:intergenic 45.0%
CATTGGATCTTGTTAGACGG+AGG + chr5_4:53674489-53674508 Msa0857530:CDS 45.0%
TATAAGGTTGTGCCTGGTGT+AGG + chr5_4:53674635-53674654 Msa0857530:CDS 45.0%
GACCTATGAGACACTGAAGA+TGG + chr5_4:53674670-53674689 Msa0857530:CDS 45.0%
TTGCCCAACCATGAGAATCT+AGG - chr5_4:53674835-53674854 None:intergenic 45.0%
! CAACGTTGTAGTGCTACTGT+GGG + chr5_4:53674852-53674871 Msa0857530:three_prime_UTR 45.0%
! AACGTTGTAGTGCTACTGTG+GGG + chr5_4:53674853-53674872 Msa0857530:three_prime_UTR 45.0%
TGGAGATGCAAACGGAAGCT+AGG + chr5_4:53670848-53670867 Msa0857530:exon 50.0%
GGAGATGCAAACGGAAGCTA+GGG + chr5_4:53670849-53670868 Msa0857530:exon 50.0%
ATGCAAACGGAAGCTAGGGT+TGG + chr5_4:53670853-53670872 Msa0857530:CDS 50.0%
!! GGAAGCTAGGGTTGGTGTAA+CGG + chr5_4:53670861-53670880 Msa0857530:CDS 50.0%
AAGCCCTAAACCCCTCTTCA+TGG - chr5_4:53672038-53672057 None:intergenic 50.0%
CCGCGTTCTTACAAGATCCA+AGG - chr5_4:53672346-53672365 None:intergenic 50.0%
CTCGGCCTTTATAAGGGACT+TGG + chr5_4:53672659-53672678 Msa0857530:CDS 50.0%
! CTGGTGCTAATGCAGACTGT+TGG + chr5_4:53672763-53672782 Msa0857530:intron 50.0%
! GCAGCTGATTCCGTCACATA+AGG + chr5_4:53673574-53673593 Msa0857530:intron 50.0%
! CCTCTCACATTTGGTAACCG+AGG - chr5_4:53673628-53673647 None:intergenic 50.0%
CCTCGGTTACCAAATGTGAG+AGG + chr5_4:53673625-53673644 Msa0857530:intron 50.0%
!! TGTGAGAGGTGTCCTCTTTG+AGG + chr5_4:53673639-53673658 Msa0857530:intron 50.0%
TCCGTCCAAACATCAGGTGA+AGG - chr5_4:53673685-53673704 None:intergenic 50.0%
TGTATGTTCAGGCAGGCTTG+TGG + chr5_4:53674041-53674060 Msa0857530:intron 50.0%
ACAAATTGCGGAGAGTCTCG+TGG + chr5_4:53674155-53674174 Msa0857530:intron 50.0%
ACAAAGTTGCAAGCCTGCAC+TGG - chr5_4:53674236-53674255 None:intergenic 50.0%
TAGACGGAGGAAGCAACTTG+AGG + chr5_4:53674502-53674521 Msa0857530:CDS 50.0%
AGACGGAGGAAGCAACTTGA+GGG + chr5_4:53674503-53674522 Msa0857530:CDS 50.0%
! GCAACGTTGTAGTGCTACTG+TGG + chr5_4:53674851-53674870 Msa0857530:three_prime_UTR 50.0%
ATGGTGCACAACACTGCAAC+GGG - chr5_4:53675059-53675078 None:intergenic 50.0%
CATGGTGCACAACACTGCAA+CGG - chr5_4:53675060-53675079 None:intergenic 50.0%
!! AGCTAGGGTTGGTGTAACGG+TGG + chr5_4:53670864-53670883 Msa0857530:CDS 55.0%
!! AGGGTTGGTGTAACGGTGGA+CGG + chr5_4:53670868-53670887 Msa0857530:CDS 55.0%
TAACGGTGGACGGTGGTGTT+CGG + chr5_4:53670878-53670897 Msa0857530:CDS 55.0%
ATTTCTCAGCTTCTCGCCGG+AGG + chr5_4:53670943-53670962 Msa0857530:CDS 55.0%
!! AAGAGAGATGGTGGGGGTAC+AGG + chr5_4:53671863-53671882 Msa0857530:intron 55.0%
! GGTGGGGGTACAGGTTATTG+AGG + chr5_4:53671872-53671891 Msa0857530:intron 55.0%
!! TTTGTTGGTGGTGGGTTGGC+AGG + chr5_4:53672294-53672313 Msa0857530:CDS 55.0%
GGGACTTGGAACTACCCTCT+TGG + chr5_4:53672673-53672692 Msa0857530:CDS 55.0%
! CTGGCTTGTGGCAGTCTTTC+AGG + chr5_4:53672986-53673005 Msa0857530:CDS 55.0%
!! TCTGGTTCTAGGGGTCAGTC+TGG - chr5_4:53673390-53673409 None:intergenic 55.0%
TGACCCCTAGAACCAGAGAC+CGG + chr5_4:53673393-53673412 Msa0857530:intron 55.0%
!! ATCCCGGTCTCTGGTTCTAG+GGG - chr5_4:53673399-53673418 None:intergenic 55.0%
!! CATCCCGGTCTCTGGTTCTA+GGG - chr5_4:53673400-53673419 None:intergenic 55.0%
AACAACTCCATCCCGGTCTC+TGG - chr5_4:53673408-53673427 None:intergenic 55.0%
GACGGAGGAAGCAACTTGAG+GGG + chr5_4:53674504-53674523 Msa0857530:CDS 55.0%
ACGGAGGAAGCAACTTGAGG+GGG + chr5_4:53674505-53674524 Msa0857530:CDS 55.0%
CGAGCGCGTGTGTACAATAC+AGG + chr5_4:53674536-53674555 Msa0857530:CDS 55.0%
TTCCGGTCAGAAGGTTTGCG+TGG + chr5_4:53674584-53674603 Msa0857530:CDS 55.0%
GGTTTGCGTGGCCTTTACAG+AGG + chr5_4:53674596-53674615 Msa0857530:CDS 55.0%
! GCAGTTGCAGCCTTGCTGTA+TGG - chr5_4:53674983-53675002 None:intergenic 55.0%
GTTGGTGTAACGGTGGACGG+TGG + chr5_4:53670871-53670890 Msa0857530:CDS 60.0%
CAACCACCGCCGCAACAGAT+TGG + chr5_4:53670916-53670935 Msa0857530:CDS 60.0%
GTTCCAATCTGTTGCGGCGG+TGG - chr5_4:53670922-53670941 None:intergenic 60.0%
CAAAGCTCCGGCAACTCCTC+CGG - chr5_4:53670962-53670981 None:intergenic 60.0%
!! AAGAACGCGGCTTGCTGCAC+AGG + chr5_4:53672356-53672375 Msa0857530:CDS 60.0%
GACCCCTAGAACCAGAGACC+GGG + chr5_4:53673394-53673413 Msa0857530:intron 60.0%
!! CCATCCCGGTCTCTGGTTCT+AGG - chr5_4:53673401-53673420 None:intergenic 60.0%
CCTAGAACCAGAGACCGGGA+TGG + chr5_4:53673398-53673417 Msa0857530:intron 60.0%
AGGAAGCAACTTGAGGGGGC+TGG + chr5_4:53674509-53674528 Msa0857530:CDS 60.0%
AAGCAACTTGAGGGGGCTGG+TGG + chr5_4:53674512-53674531 Msa0857530:CDS 60.0%
! AGCAACTTGAGGGGGCTGGT+GGG + chr5_4:53674513-53674532 Msa0857530:CDS 60.0%
GGCCACGCAAACCTTCTGAC+CGG - chr5_4:53674589-53674608 None:intergenic 60.0%
GCACAACACTGCAACGGGAC+TGG - chr5_4:53675054-53675073 None:intergenic 60.0%
CTTCTCGCCGGAGGAGTTGC+CGG + chr5_4:53670952-53670971 Msa0857530:CDS 65.0%
Chromosome Type Strat End Strand Name
chr5_4 gene 53670539 53675329 53670539 ID=Msa0857530;Name=Msa0857530
chr5_4 mRNA 53670539 53675329 53670539 ID=Msa0857530-mRNA-1;Parent=Msa0857530;Name=Msa0857530-mRNA-1;_AED=0.23;_eAED=0.23;_QI=314|1|1|1|1|1|7|611|327
chr5_4 exon 53670539 53671029 53670539 ID=Msa0857530-mRNA-1:exon:16613;Parent=Msa0857530-mRNA-1
chr5_4 exon 53671964 53672140 53671964 ID=Msa0857530-mRNA-1:exon:16614;Parent=Msa0857530-mRNA-1
chr5_4 exon 53672228 53672377 53672228 ID=Msa0857530-mRNA-1:exon:16615;Parent=Msa0857530-mRNA-1
chr5_4 exon 53672593 53672694 53672593 ID=Msa0857530-mRNA-1:exon:16616;Parent=Msa0857530-mRNA-1
chr5_4 exon 53672778 53672848 53672778 ID=Msa0857530-mRNA-1:exon:16617;Parent=Msa0857530-mRNA-1
chr5_4 exon 53672958 53673025 53672958 ID=Msa0857530-mRNA-1:exon:16618;Parent=Msa0857530-mRNA-1
chr5_4 exon 53674480 53675329 53674480 ID=Msa0857530-mRNA-1:exon:16619;Parent=Msa0857530-mRNA-1
chr5_4 five_prime_UTR 53670539 53670852 53670539 ID=Msa0857530-mRNA-1:five_prime_utr;Parent=Msa0857530-mRNA-1
chr5_4 CDS 53670853 53671029 53670853 ID=Msa0857530-mRNA-1:cds;Parent=Msa0857530-mRNA-1
chr5_4 CDS 53671964 53672140 53671964 ID=Msa0857530-mRNA-1:cds;Parent=Msa0857530-mRNA-1
chr5_4 CDS 53672228 53672377 53672228 ID=Msa0857530-mRNA-1:cds;Parent=Msa0857530-mRNA-1
chr5_4 CDS 53672593 53672694 53672593 ID=Msa0857530-mRNA-1:cds;Parent=Msa0857530-mRNA-1
chr5_4 CDS 53672778 53672848 53672778 ID=Msa0857530-mRNA-1:cds;Parent=Msa0857530-mRNA-1
chr5_4 CDS 53672958 53673025 53672958 ID=Msa0857530-mRNA-1:cds;Parent=Msa0857530-mRNA-1
chr5_4 CDS 53674480 53674718 53674480 ID=Msa0857530-mRNA-1:cds;Parent=Msa0857530-mRNA-1
chr5_4 three_prime_UTR 53674719 53675329 53674719 ID=Msa0857530-mRNA-1:three_prime_utr;Parent=Msa0857530-mRNA-1
Gene Sequence

>Msa0857530

ATGCAAACGGAAGCTAGGGTTGGTGTAACGGTGGACGGTGGTGTTCGGAAGTTTGTTAAACAACAACCACCGCCGCAACAGATTGGAACTATTTCTCAGCTTCTCGCCGGAGGAGTTGCCGGAGCTTTGAGTAAAACTTGTACTGCGCCACTTGCTAGACTCACAATCCTTTTTCAGATTCAAGGGATGCATTCTAATGTTGCAACTTTGAGGAAAGCGAGTATATGGAATGAAGCTTCAAGAATAATCCATGAAGAGGGGTTTAGGGCTTTTTGGAAAGGGAATCTAGTTACAATTGCTCACCGTTTACCTTACTCTTCTGTTAACTTTTATTCTTATGAGCATTACAAGAAGTTTCTGAGGACGATTCCGCAACTGCAAAGTAATAGAGATAATATCAGTGCAGATCTTTGTATACATTTTGTTGGTGGTGGGTTGGCAGGCATAACTGCTGCTACATCTACTTATCCCTTGGATCTTGTAAGAACGCGGCTTGCTGCACAGACGAATTTTACTTACTATAGAGGTATTGGACATGCTTTACAAACAATTGTCAAGGAAGAGGGATTACTCGGCCTTTATAAGGGACTTGGAACTACCCTCTTGACTGTTGGGCCAAATATAGCAATCAGCTTCTCCGTATATGAAAGCTTGCGATCGTTTTGGATGTCAAACAGATCCGATGATTCAACTGTTGTTGTTAGTCTGGCTTGTGGCAGTCTTTCAGGCATTGCATCATCAACAGCAACGTTTCCATTGGATCTTGTTAGACGGAGGAAGCAACTTGAGGGGGCTGGTGGGCGAGCGCGTGTGTACAATACAGGTCTCTTTGGTACATTCAAGCATATATTCCGGTCAGAAGGTTTGCGTGGCCTTTACAGAGGAATTTTACCTGAATACTATAAGGTTGTGCCTGGTGTAGGCATTTGTTTTATGACCTATGAGACACTGAAGATGGTTTTAGCGGAGATTACTACCGTATGA
Protein sequence

>Msa0857530

MQTEARVGVTVDGGVRKFVKQQPPPQQIGTISQLLAGGVAGALSKTCTAPLARLTILFQIQGMHSNVATLRKASIWNEASRIIHEEGFRAFWKGNLVTIAHRLPYSSVNFYSYEHYKKFLRTIPQLQSNRDNISADLCIHFVGGGLAGITAATSTYPLDLVRTRLAAQTNFTYYRGIGHALQTIVKEEGLLGLYKGLGTTLLTVGPNIAISFSVYESLRSFWMSNRSDDSTVVVSLACGSLSGIASSTATFPLDLVRRRKQLEGAGGRARVYNTGLFGTFKHIFRSEGLRGLYRGILPEYYKVVPGVGICFMTYETLKMVLAEITTV*