Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0860090 | TKY56988.1 | 31.707 | 410 | 213 | 18 | 80 | 481 | 47 | 397 | 2.68e-34 | 145 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0860090 | A0A392MSZ3 | 59.836 | 122 | 40 | 5 | 21 | 137 | 1 | 118 | 1.23e-24 | 108 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0739410 | Msa0860090 | 0.807794 | 4.246966e-50 | -8.615850e-47 |
| Msa0819790 | Msa0860090 | 0.805969 | 1.032825e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0860090 | MtrunA17_Chr5g0435971 | 28.080 | 349 | 200 | 14 | 80 | 418 | 70 | 377 | 3.80e-17 | 83.6 |
| Msa0860090 | MtrunA17_Chr5g0435871 | 27.401 | 354 | 196 | 15 | 80 | 418 | 73 | 380 | 4.71e-17 | 83.6 |
| Msa0860090 | MtrunA17_Chr8g0352661 | 28.205 | 351 | 203 | 14 | 85 | 426 | 75 | 385 | 5.80e-17 | 83.2 |
| Msa0860090 | MtrunA17_Chr6g0486981 | 26.366 | 421 | 237 | 18 | 88 | 500 | 80 | 435 | 4.76e-16 | 80.5 |
| Msa0860090 | MtrunA17_Chr2g0310831 | 25.298 | 419 | 216 | 15 | 87 | 483 | 85 | 428 | 6.64e-16 | 80.1 |
| Msa0860090 | MtrunA17_Chr8g0352671 | 27.666 | 347 | 193 | 15 | 87 | 418 | 80 | 383 | 1.70e-15 | 78.6 |
| Msa0860090 | MtrunA17_Chr2g0307991 | 24.208 | 442 | 255 | 18 | 65 | 493 | 26 | 400 | 1.73e-15 | 78.6 |
| Msa0860090 | MtrunA17_Chr2g0310821 | 24.826 | 431 | 240 | 18 | 75 | 497 | 90 | 444 | 5.20e-14 | 73.9 |
| Msa0860090 | MtrunA17_Chr2g0310801 | 26.005 | 373 | 189 | 16 | 75 | 421 | 72 | 383 | 1.80e-13 | 72.4 |
| Msa0860090 | MtrunA17_Chr1g0179091 | 29.461 | 241 | 132 | 11 | 245 | 483 | 150 | 354 | 3.53e-13 | 71.2 |
| Msa0860090 | MtrunA17_Chr2g0308001 | 24.586 | 423 | 242 | 17 | 84 | 493 | 46 | 404 | 4.05e-12 | 68.2 |
| Msa0860090 | MtrunA17_Chr4g0023351 | 27.059 | 255 | 144 | 8 | 85 | 332 | 47 | 266 | 1.09e-11 | 65.9 |
| Msa0860090 | MtrunA17_Chr5g0419291 | 24.533 | 428 | 239 | 21 | 77 | 493 | 70 | 424 | 1.46e-11 | 66.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0860090 | AT2G03200.1 | 25.697 | 323 | 185 | 13 | 117 | 421 | 122 | 407 | 6.28e-13 | 71.2 |
| Msa0860090 | AT5G37540.1 | 25.066 | 379 | 226 | 17 | 53 | 413 | 37 | 375 | 4.20e-12 | 68.6 |
Find 94 sgRNAs with CRISPR-Local
Find 179 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TAGCATTATTATATTATAAA+AGG | 0.174882 | 5_4:-58590591 | None:intergenic |
| GAATGACCTTGTTCTGTTAA+AGG | 0.180983 | 5_4:-58589825 | None:intergenic |
| AGGGGTCGGTGTGGAATTTA+AGG | 0.190319 | 5_4:+58589788 | Msa0860090:CDS |
| ACTAAATCAAAAGGAATTTA+TGG | 0.220744 | 5_4:+58589519 | Msa0860090:CDS |
| CACAACAACAACATCTCTTT+TGG | 0.242845 | 5_4:+58587515 | Msa0860090:CDS |
| TTATTAGCTTTAGTGTTAAA+AGG | 0.255086 | 5_4:-58587403 | None:intergenic |
| GCTATGAGCAAGTTCACTTT+AGG | 0.261155 | 5_4:+58589768 | Msa0860090:CDS |
| CCGCAATAGAAACTCTTCTT+AGG | 0.270787 | 5_4:-58589381 | None:intergenic |
| AGCGATCTCATATGGCTTTA+TGG | 0.283710 | 5_4:+58587689 | Msa0860090:CDS |
| CATCAAAGGCTACGTAACTA+TGG | 0.301401 | 5_4:+58590251 | Msa0860090:CDS |
| ATTTCAGATTCAATGGTTAA+AGG | 0.303548 | 5_4:-58587569 | None:intergenic |
| AAGGTAATGATTATTGATTC+AGG | 0.310716 | 5_4:+58589948 | Msa0860090:CDS |
| TAGGGCACAGATGGATTTCT+TGG | 0.326909 | 5_4:+58590310 | Msa0860090:CDS |
| TGGAATGGCATATGTATCTT+TGG | 0.327787 | 5_4:-58587657 | None:intergenic |
| TTTATGGTCCAGCTAATCTT+TGG | 0.343745 | 5_4:+58589535 | Msa0860090:CDS |
| ATGAGATCGCTTCCGGTGTC+TGG | 0.356075 | 5_4:-58587677 | None:intergenic |
| ATGCCATGCCATTTGGTATA+AGG | 0.356989 | 5_4:+58590438 | Msa0860090:three_prime_UTR |
| CTATGAGCAAGTTCACTTTA+GGG | 0.376353 | 5_4:+58589769 | Msa0860090:CDS |
| AGCAATTATTTCAGATTCAA+TGG | 0.381469 | 5_4:-58587576 | None:intergenic |
| GCTCGATGTTTAAACCGTTT+AGG | 0.384979 | 5_4:-58587478 | None:intergenic |
| ATGTAAAGATCTAGCTTTGA+AGG | 0.385693 | 5_4:+58589413 | Msa0860090:CDS |
| AAGAACAAACATTGAACATT+GGG | 0.386863 | 5_4:+58589574 | Msa0860090:CDS |
| AAATAATTGCTCAACAGTTC+AGG | 0.397781 | 5_4:+58587588 | Msa0860090:CDS |
| GGAGTTGTTGGACTTGGATC+CGG | 0.403303 | 5_4:+58589651 | Msa0860090:CDS |
| AGCCAAGGAGTTGTTGGACT+TGG | 0.412091 | 5_4:+58589645 | Msa0860090:CDS |
| GAGTTGTTGGACTTGGATCC+GGG | 0.414542 | 5_4:+58589652 | Msa0860090:CDS |
| TCATGAGTGTCATCACTTAT+CGG | 0.415336 | 5_4:-58589918 | None:intergenic |
| TAAGCCCATTGAAGAATTAT+CGG | 0.419091 | 5_4:+58590385 | Msa0860090:CDS |
| AAGCCATATGAGATCGCTTC+CGG | 0.423924 | 5_4:-58587684 | None:intergenic |
| GGAATGGCATATGTATCTTT+GGG | 0.435733 | 5_4:-58587656 | None:intergenic |
| TGTGTATATGCCATGCCATT+TGG | 0.436787 | 5_4:+58590431 | Msa0860090:three_prime_UTR |
| AAAAGAATTAGATGGGAAAG+AGG | 0.438382 | 5_4:+58590028 | Msa0860090:CDS |
| TTCAGGTATCTCATGAAATT+CGG | 0.440637 | 5_4:+58587605 | Msa0860090:CDS |
| TGGTTAAAGGAGATGCATCT+AGG | 0.443848 | 5_4:-58587556 | None:intergenic |
| GCTAATACTCAAAACCTAAA+CGG | 0.446692 | 5_4:+58587464 | Msa0860090:CDS |
| GTGACTTTCAATCTTACAAA+AGG | 0.447164 | 5_4:+58590332 | Msa0860090:CDS |
| GAGGTAAAACCGCATATACT+TGG | 0.447459 | 5_4:+58590284 | Msa0860090:CDS |
| ACACCGGAAGCGATCTCATA+TGG | 0.453558 | 5_4:+58587681 | Msa0860090:CDS |
| GATCTAGCTTTGAAGGAAAC+CGG | 0.456796 | 5_4:+58589420 | Msa0860090:CDS |
| ATACTTATACAGAATCCAAC+GGG | 0.457378 | 5_4:+58590177 | Msa0860090:CDS |
| TTTGTAAACCAAAGATTAGC+TGG | 0.462352 | 5_4:-58589543 | None:intergenic |
| AAGGACCGATAATTCTTCAA+TGG | 0.466438 | 5_4:-58590390 | None:intergenic |
| AAAATTGACGATGGTGATCT+TGG | 0.470958 | 5_4:+58587632 | Msa0860090:CDS |
| AGGACCGATAATTCTTCAAT+GGG | 0.473289 | 5_4:-58590389 | None:intergenic |
| AGCTTTAGTGTTAAAAGGAA+TGG | 0.477380 | 5_4:-58587398 | None:intergenic |
| AGCATTATTATATTATAAAA+GGG | 0.481784 | 5_4:-58590590 | None:intergenic |
| TGACACTCATGAAGCTCATA+AGG | 0.484215 | 5_4:+58589929 | Msa0860090:CDS |
| ATCCAAGTCCAACAACTCCT+TGG | 0.488974 | 5_4:-58589647 | None:intergenic |
| AAAGAATTAGATGGGAAAGA+GGG | 0.492739 | 5_4:+58590029 | Msa0860090:CDS |
| CACAAGTGTTACGAGAAAGA+TGG | 0.496565 | 5_4:+58590071 | Msa0860090:CDS |
| TATGTGTGTGAGAGAGAGTT+GGG | 0.502331 | 5_4:+58590547 | Msa0860090:three_prime_UTR |
| GAGAGAGTTGGGAGTGTGCA+TGG | 0.506780 | 5_4:+58590558 | Msa0860090:three_prime_UTR |
| AAAGAACAAACATTGAACAT+TGG | 0.508509 | 5_4:+58589573 | Msa0860090:CDS |
| GTAGACGGTACTAAATCAAA+AGG | 0.510645 | 5_4:+58589510 | Msa0860090:CDS |
| TCGTCTTTGCGTCGAAATTG+TGG | 0.510874 | 5_4:-58589732 | None:intergenic |
| GGGAAAGAGGGAGAAAAGAA+AGG | 0.514345 | 5_4:+58590041 | Msa0860090:CDS |
| TATAGCAGCCTTATACCAAA+TGG | 0.522877 | 5_4:-58590446 | None:intergenic |
| TATTAGCATCGGCAGGTGGT+TGG | 0.524260 | 5_4:-58587448 | None:intergenic |
| ACTTGGAAGTAGGGCACAGA+TGG | 0.526284 | 5_4:+58590301 | Msa0860090:CDS |
| ACCGCATATACTTGGAAGTA+GGG | 0.527836 | 5_4:+58590292 | Msa0860090:CDS |
| TTATGTGTGTGAGAGAGAGT+TGG | 0.531237 | 5_4:+58590546 | Msa0860090:three_prime_UTR |
| ATCGCTTCCGGTGTCTGGAA+TGG | 0.534464 | 5_4:-58587672 | None:intergenic |
| AGCAAGTTCACTTTAGGGGT+CGG | 0.538398 | 5_4:+58589774 | Msa0860090:CDS |
| GGTTAAAGGAGATGCATCTA+GGG | 0.544267 | 5_4:-58587555 | None:intergenic |
| ACAAGTGTTACGAGAAAGAT+GGG | 0.545256 | 5_4:+58590072 | Msa0860090:CDS |
| ATCAAAGGCTACGTAACTAT+GGG | 0.546671 | 5_4:+58590252 | Msa0860090:CDS |
| TAAGTACTGCAATGCATGCA+TGG | 0.562014 | 5_4:-58587317 | None:intergenic |
| ACACATATTCTTATTCTGAA+AGG | 0.569596 | 5_4:-58590409 | None:intergenic |
| TATGAGCAAGTTCACTTTAG+GGG | 0.570775 | 5_4:+58589770 | Msa0860090:CDS |
| CATCTTAAAAGTATTTCTGT+AGG | 0.587267 | 5_4:+58589873 | Msa0860090:CDS |
| AACCGCATATACTTGGAAGT+AGG | 0.589708 | 5_4:+58590291 | Msa0860090:CDS |
| TATATATGCTCAACAGTGGA+AGG | 0.589944 | 5_4:+58590212 | Msa0860090:CDS |
| AAAATGAAAAGTATCATCAA+AGG | 0.596410 | 5_4:+58590237 | Msa0860090:CDS |
| AAGTACTGCAATGCATGCAT+GGG | 0.596864 | 5_4:-58587316 | None:intergenic |
| CAGCCTTATACCAAATGGCA+TGG | 0.599563 | 5_4:-58590441 | None:intergenic |
| AGCACTCCTTTAACAGAACA+AGG | 0.603395 | 5_4:+58589819 | Msa0860090:CDS |
| TTCTTGACACACATGACTAG+AGG | 0.604107 | 5_4:-58590472 | None:intergenic |
| TTCGGTGTTAAAATTGACGA+TGG | 0.612960 | 5_4:+58587623 | Msa0860090:CDS |
| TGAGTATTAGCATCGGCAGG+TGG | 0.619606 | 5_4:-58587452 | None:intergenic |
| GCCCTACTTCCAAGTATATG+CGG | 0.624912 | 5_4:-58590293 | None:intergenic |
| TATACTTATACAGAATCCAA+CGG | 0.626260 | 5_4:+58590176 | Msa0860090:CDS |
| AGTTGTTGGACTTGGATCCG+GGG | 0.631745 | 5_4:+58589653 | Msa0860090:CDS |
| GTTCACTTTAGGGGTCGGTG+TGG | 0.641029 | 5_4:+58589779 | Msa0860090:CDS |
| CCTAAGAAGAGTTTCTATTG+CGG | 0.643718 | 5_4:+58589381 | Msa0860090:CDS |
| ACATATGCCATTCCAGACAC+CGG | 0.654784 | 5_4:+58587665 | Msa0860090:CDS |
| ATTTATCAAAGATACCTCCC+CGG | 0.658270 | 5_4:-58589670 | None:intergenic |
| TTTAGTATGAGTTATGTAGA+CGG | 0.663566 | 5_4:+58589495 | Msa0860090:CDS |
| TAACTATGGGAAGTCATCAG+AGG | 0.667075 | 5_4:+58590265 | Msa0860090:CDS |
| TGTTGGACTTGGATCCGGGG+AGG | 0.668693 | 5_4:+58589656 | Msa0860090:CDS |
| ACATTATATATGCTCAACAG+TGG | 0.673012 | 5_4:+58590208 | Msa0860090:CDS |
| AAGACTTGTGAATCTAACCA+AGG | 0.681574 | 5_4:+58587713 | Msa0860090:CDS |
| TGTCAAGAATAATAAATGTG+TGG | 0.688701 | 5_4:+58590486 | Msa0860090:three_prime_UTR |
| TTATACAGAATCCAACGGGG+AGG | 0.732536 | 5_4:+58590181 | Msa0860090:CDS |
| TACTTATACAGAATCCAACG+GGG | 0.814888 | 5_4:+58590178 | Msa0860090:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TATATTTTTTTAAATAAATA+GGG | - | chr5_4:58588922-58588941 | None:intergenic | 0.0% |
| !!! | ATATATTTTTTTAAATAAAT+AGG | - | chr5_4:58588923-58588942 | None:intergenic | 0.0% |
| !! | TGAAAATTATTATAAATAAG+GGG | - | chr5_4:58588647-58588666 | None:intergenic | 10.0% |
| !!! | CAAAAATTGTTTTATAAAAA+GGG | - | chr5_4:58588862-58588881 | None:intergenic | 10.0% |
| !!! | ACAAAAATTGTTTTATAAAA+AGG | - | chr5_4:58588863-58588882 | None:intergenic | 10.0% |
| !! | TAAAAAATAATTAATGTAGT+TGG | - | chr5_4:58588890-58588909 | None:intergenic | 10.0% |
| !!! | ATTTGTTTTTCTTATATTAA+AGG | + | chr5_4:58589288-58589307 | Msa0860090:intron | 10.0% |
| !! | AGCATTATTATATTATAAAA+GGG | - | chr5_4:58590593-58590612 | None:intergenic | 10.0% |
| !! | TAGCATTATTATATTATAAA+AGG | - | chr5_4:58590594-58590613 | None:intergenic | 10.0% |
| !! | AATCCAACATTAATTAAATT+TGG | + | chr5_4:58587802-58587821 | Msa0860090:intron | 15.0% |
| !!! | TATAATTTTTGTGAAATGTA+TGG | + | chr5_4:58587981-58588000 | Msa0860090:intron | 15.0% |
| !!! | AATTAATTTCTATGTTTTGA+CGG | + | chr5_4:58588240-58588259 | Msa0860090:intron | 15.0% |
| !!! | TTTTTTTTAGAGGATAAATA+AGG | - | chr5_4:58588620-58588639 | None:intergenic | 15.0% |
| !! | TGGATAAAATTGAAAAAAAA+AGG | + | chr5_4:58588686-58588705 | Msa0860090:intron | 15.0% |
| !! | GGATAAAATTGAAAAAAAAA+GGG | + | chr5_4:58588687-58588706 | Msa0860090:intron | 15.0% |
| !! | GATTGAAATATTCATTTATT+TGG | + | chr5_4:58588726-58588745 | Msa0860090:intron | 15.0% |
| !! | AAAAATCTTATAAATAGGAA+CGG | - | chr5_4:58588820-58588839 | None:intergenic | 15.0% |
| !! | TTCTCAAAAATCTTATAAAT+AGG | - | chr5_4:58588825-58588844 | None:intergenic | 15.0% |
| !!! | TTATTAGCTTTAGTGTTAAA+AGG | - | chr5_4:58587406-58587425 | None:intergenic | 20.0% |
| !! | AAAGTAAATTAGATTTACCT+TGG | - | chr5_4:58587733-58587752 | None:intergenic | 20.0% |
| !! | TGACCAAATTTAATTAATGT+TGG | - | chr5_4:58587808-58587827 | None:intergenic | 20.0% |
| !! | CATATAATCAAGTGATTAAT+AGG | - | chr5_4:58588090-58588109 | None:intergenic | 20.0% |
| !! | TTATTTAGATTCACATGTAT+GGG | - | chr5_4:58588274-58588293 | None:intergenic | 20.0% |
| !! | TTTATTTAGATTCACATGTA+TGG | - | chr5_4:58588275-58588294 | None:intergenic | 20.0% |
| !!! | TATTTTCAAAAATATCTACG+TGG | + | chr5_4:58588334-58588353 | Msa0860090:intron | 20.0% |
| !! | GTGATATAAATTAGATTAGA+TGG | + | chr5_4:58588464-58588483 | Msa0860090:intron | 20.0% |
| !! | CTCTCAAAAAAAAAAAATCA+AGG | - | chr5_4:58588516-58588535 | None:intergenic | 20.0% |
| !! | AATTCCTCAATTAAAACATT+TGG | + | chr5_4:58588666-58588685 | Msa0860090:intron | 20.0% |
| !!! | TTATCCAAATGTTTTAATTG+AGG | - | chr5_4:58588673-58588692 | None:intergenic | 20.0% |
| !!! | ATAGAAAAATATGTGTCATT+AGG | + | chr5_4:58588761-58588780 | Msa0860090:intron | 20.0% |
| !!! | TAGAAAAATATGTGTCATTA+GGG | + | chr5_4:58588762-58588781 | Msa0860090:intron | 20.0% |
| !!! | ATTTTACCAAAATGATCATA+TGG | + | chr5_4:58589069-58589088 | Msa0860090:intron | 20.0% |
| !! | ACCAAAATAACCATATATTT+AGG | + | chr5_4:58589133-58589152 | Msa0860090:intron | 20.0% |
| !! | CCAAAATAACCATATATTTA+GGG | + | chr5_4:58589134-58589153 | Msa0860090:intron | 20.0% |
| !!! | TGTTTTTCTTATATTAAAGG+TGG | + | chr5_4:58589291-58589310 | Msa0860090:intron | 20.0% |
| !! | ACTAAATCAAAAGGAATTTA+TGG | + | chr5_4:58589519-58589538 | Msa0860090:CDS | 20.0% |
| !! | AAAGTAGAAAAAGAATTAGA+TGG | + | chr5_4:58590020-58590039 | Msa0860090:CDS | 20.0% |
| !! | AAGTAGAAAAAGAATTAGAT+GGG | + | chr5_4:58590021-58590040 | Msa0860090:CDS | 20.0% |
| !!! | AAAATGAAAAGTATCATCAA+AGG | + | chr5_4:58590237-58590256 | Msa0860090:CDS | 20.0% |
| !!! | TATTAATAAAGTGTCTTTTG+AGG | + | chr5_4:58590355-58590374 | Msa0860090:CDS | 20.0% |
| !!! | TGTTAAAAGGAATGGTTTTA+GGG | - | chr5_4:58587393-58587412 | None:intergenic | 25.0% |
| ! | ATTTCAGATTCAATGGTTAA+AGG | - | chr5_4:58587572-58587591 | None:intergenic | 25.0% |
| ! | AGCAATTATTTCAGATTCAA+TGG | - | chr5_4:58587579-58587598 | None:intergenic | 25.0% |
| ! | TCAAAAACCAATAACTAAGA+AGG | + | chr5_4:58587909-58587928 | Msa0860090:intron | 25.0% |
| ! | AATTCAACCTTCTTAGTTAT+TGG | - | chr5_4:58587919-58587938 | None:intergenic | 25.0% |
| ! | AATAACTAAGAAGGTTGAAT+TGG | + | chr5_4:58587918-58587937 | Msa0860090:intron | 25.0% |
| !! | TTTTGGATGAAACTATTCTA+CGG | - | chr5_4:58588023-58588042 | None:intergenic | 25.0% |
| !!! | GAGAATCTGAGTTTAATTTT+TGG | - | chr5_4:58588040-58588059 | None:intergenic | 25.0% |
| ! | AAATTAGATTAGATGGTACA+AGG | + | chr5_4:58588471-58588490 | Msa0860090:intron | 25.0% |
| ! | AAAAATCAAGGTCATATAAC+TGG | - | chr5_4:58588504-58588523 | None:intergenic | 25.0% |
| ! | CAAATTGATGTTATAAGTCA+AGG | - | chr5_4:58588546-58588565 | None:intergenic | 25.0% |
| ! | CTTGACTTATAACATCAATT+TGG | + | chr5_4:58588544-58588563 | Msa0860090:intron | 25.0% |
| !!! | AAGGGGTTTTTTTTTTTTAG+AGG | - | chr5_4:58588630-58588649 | None:intergenic | 25.0% |
| !! | TTAAATAAATAGGGGTATGT+TGG | - | chr5_4:58588913-58588932 | None:intergenic | 25.0% |
| !!! | GATCATTTTGGTAAAATCAT+GGG | - | chr5_4:58589066-58589085 | None:intergenic | 25.0% |
| !!! | TGATCATTTTGGTAAAATCA+TGG | - | chr5_4:58589067-58589086 | None:intergenic | 25.0% |
| !! | CCCTAAATATATGGTTATTT+TGG | - | chr5_4:58589137-58589156 | None:intergenic | 25.0% |
| ! | AATAACCATATATTTAGGGA+CGG | + | chr5_4:58589138-58589157 | Msa0860090:intron | 25.0% |
| !! | AAGATACAATTTTCTCTCTA+TGG | + | chr5_4:58589227-58589246 | Msa0860090:intron | 25.0% |
| !!! | TCTTTATCTTTTCTAGAATC+TGG | - | chr5_4:58589465-58589484 | None:intergenic | 25.0% |
| ! | TTTAGTATGAGTTATGTAGA+CGG | + | chr5_4:58589495-58589514 | Msa0860090:CDS | 25.0% |
| ! | AAAGAACAAACATTGAACAT+TGG | + | chr5_4:58589573-58589592 | Msa0860090:CDS | 25.0% |
| ! | AAGAACAAACATTGAACATT+GGG | + | chr5_4:58589574-58589593 | Msa0860090:CDS | 25.0% |
| !!! | CTACAGAAATACTTTTAAGA+TGG | - | chr5_4:58589875-58589894 | None:intergenic | 25.0% |
| !!! | CATCTTAAAAGTATTTCTGT+AGG | + | chr5_4:58589873-58589892 | Msa0860090:CDS | 25.0% |
| !!! | AAGGTAATGATTATTGATTC+AGG | + | chr5_4:58589948-58589967 | Msa0860090:CDS | 25.0% |
| ! | TATACTTATACAGAATCCAA+CGG | + | chr5_4:58590176-58590195 | Msa0860090:CDS | 25.0% |
| ! | ACACATATTCTTATTCTGAA+AGG | - | chr5_4:58590412-58590431 | None:intergenic | 25.0% |
| ! | TGTCAAGAATAATAAATGTG+TGG | + | chr5_4:58590486-58590505 | Msa0860090:three_prime_UTR | 25.0% |
| !! | GTATGTAGTTTTCAATAAGT+TGG | + | chr5_4:58590515-58590534 | Msa0860090:three_prime_UTR | 25.0% |
| ! | GTGTTAAAAGGAATGGTTTT+AGG | - | chr5_4:58587394-58587413 | None:intergenic | 30.0% |
| ! | AGCTTTAGTGTTAAAAGGAA+TGG | - | chr5_4:58587401-58587420 | None:intergenic | 30.0% |
| !!! | TAGGTTTTGAGTATTAGCAT+CGG | - | chr5_4:58587462-58587481 | None:intergenic | 30.0% |
| GCTAATACTCAAAACCTAAA+CGG | + | chr5_4:58587464-58587483 | Msa0860090:CDS | 30.0% | |
| AAATAATTGCTCAACAGTTC+AGG | + | chr5_4:58587588-58587607 | Msa0860090:CDS | 30.0% | |
| TTCAGGTATCTCATGAAATT+CGG | + | chr5_4:58587605-58587624 | Msa0860090:CDS | 30.0% | |
| TTTGGATGAAACTATTCTAC+GGG | - | chr5_4:58588022-58588041 | None:intergenic | 30.0% | |
| AAACAACTAATTCATCCTAC+TGG | + | chr5_4:58588062-58588081 | Msa0860090:intron | 30.0% | |
| !!! | CGCTATATTGTCACTTTTAT+AGG | + | chr5_4:58588298-58588317 | Msa0860090:intron | 30.0% |
| TTCAAAGTGAAAGTTATTGC+AGG | + | chr5_4:58588442-58588461 | Msa0860090:intron | 30.0% | |
| ! | CTTTAAGAGAGAGTTAGTAT+AGG | - | chr5_4:58588978-58588997 | None:intergenic | 30.0% |
| TACCAAAATGATCATATGGA+CGG | + | chr5_4:58589073-58589092 | Msa0860090:intron | 30.0% | |
| !!! | GGTTATTTTGGTTAAATCAC+AGG | - | chr5_4:58589125-58589144 | None:intergenic | 30.0% |
| !! | ATGTAAAGATCTAGCTTTGA+AGG | + | chr5_4:58589413-58589432 | Msa0860090:CDS | 30.0% |
| TTTGTAAACCAAAGATTAGC+TGG | - | chr5_4:58589546-58589565 | None:intergenic | 30.0% | |
| AAAAGAATTAGATGGGAAAG+AGG | + | chr5_4:58590028-58590047 | Msa0860090:CDS | 30.0% | |
| AAAGAATTAGATGGGAAAGA+GGG | + | chr5_4:58590029-58590048 | Msa0860090:CDS | 30.0% | |
| !! | AGACAAAAATTGAGTTGAAG+AGG | + | chr5_4:58590135-58590154 | Msa0860090:CDS | 30.0% |
| !! | GACAAAAATTGAGTTGAAGA+GGG | + | chr5_4:58590136-58590155 | Msa0860090:CDS | 30.0% |
| ATACTTATACAGAATCCAAC+GGG | + | chr5_4:58590177-58590196 | Msa0860090:CDS | 30.0% | |
| ACATTATATATGCTCAACAG+TGG | + | chr5_4:58590208-58590227 | Msa0860090:CDS | 30.0% | |
| GTGACTTTCAATCTTACAAA+AGG | + | chr5_4:58590332-58590351 | Msa0860090:CDS | 30.0% | |
| TAAGCCCATTGAAGAATTAT+CGG | + | chr5_4:58590385-58590404 | Msa0860090:CDS | 30.0% | |
| !!! | GGTTTTAGGGTATGCATTTT+GGG | - | chr5_4:58587380-58587399 | None:intergenic | 35.0% |
| !!! | TGGTTTTAGGGTATGCATTT+TGG | - | chr5_4:58587381-58587400 | None:intergenic | 35.0% |
| ! | CACAACAACAACATCTCTTT+TGG | + | chr5_4:58587515-58587534 | Msa0860090:CDS | 35.0% |
| !! | TTCGGTGTTAAAATTGACGA+TGG | + | chr5_4:58587623-58587642 | Msa0860090:CDS | 35.0% |
| AAAATTGACGATGGTGATCT+TGG | + | chr5_4:58587632-58587651 | Msa0860090:CDS | 35.0% | |
| GGAATGGCATATGTATCTTT+GGG | - | chr5_4:58587659-58587678 | None:intergenic | 35.0% | |
| TGGAATGGCATATGTATCTT+TGG | - | chr5_4:58587660-58587679 | None:intergenic | 35.0% | |
| AAGACTTGTGAATCTAACCA+AGG | + | chr5_4:58587713-58587732 | Msa0860090:CDS | 35.0% | |
| TTGGTAAAATCATGGGAATG+AGG | - | chr5_4:58589059-58589078 | None:intergenic | 35.0% | |
| TACATCCGTCCCTAAATATA+TGG | - | chr5_4:58589146-58589165 | None:intergenic | 35.0% | |
| CCTAAGAAGAGTTTCTATTG+CGG | + | chr5_4:58589381-58589400 | Msa0860090:CDS | 35.0% | |
| !! | ACATTCTGCAGTTTTGATAC+CGG | - | chr5_4:58589442-58589461 | None:intergenic | 35.0% |
| GTAGACGGTACTAAATCAAA+AGG | + | chr5_4:58589510-58589529 | Msa0860090:CDS | 35.0% | |
| TTTATGGTCCAGCTAATCTT+TGG | + | chr5_4:58589535-58589554 | Msa0860090:CDS | 35.0% | |
| ! | ATCATCTTTCTCTTTTGTGC+TGG | - | chr5_4:58589613-58589632 | None:intergenic | 35.0% |
| ATTTATCAAAGATACCTCCC+CGG | - | chr5_4:58589673-58589692 | None:intergenic | 35.0% | |
| CTATGAGCAAGTTCACTTTA+GGG | + | chr5_4:58589769-58589788 | Msa0860090:CDS | 35.0% | |
| TATGAGCAAGTTCACTTTAG+GGG | + | chr5_4:58589770-58589789 | Msa0860090:CDS | 35.0% | |
| GAATGACCTTGTTCTGTTAA+AGG | - | chr5_4:58589828-58589847 | None:intergenic | 35.0% | |
| TCATGAGTGTCATCACTTAT+CGG | - | chr5_4:58589921-58589940 | None:intergenic | 35.0% | |
| ACAAGTGTTACGAGAAAGAT+GGG | + | chr5_4:58590072-58590091 | Msa0860090:CDS | 35.0% | |
| TACTTATACAGAATCCAACG+GGG | + | chr5_4:58590178-58590197 | Msa0860090:CDS | 35.0% | |
| TATATATGCTCAACAGTGGA+AGG | + | chr5_4:58590212-58590231 | Msa0860090:CDS | 35.0% | |
| ATCAAAGGCTACGTAACTAT+GGG | + | chr5_4:58590252-58590271 | Msa0860090:CDS | 35.0% | |
| AGGACCGATAATTCTTCAAT+GGG | - | chr5_4:58590392-58590411 | None:intergenic | 35.0% | |
| AAGGACCGATAATTCTTCAA+TGG | - | chr5_4:58590393-58590412 | None:intergenic | 35.0% | |
| ! | TATAGCAGCCTTATACCAAA+TGG | - | chr5_4:58590449-58590468 | None:intergenic | 35.0% |
| ! | TAAGTACTGCAATGCATGCA+TGG | - | chr5_4:58587320-58587339 | None:intergenic | 40.0% |
| !!! | TTTTGAGTATTAGCATCGGC+AGG | - | chr5_4:58587458-58587477 | None:intergenic | 40.0% |
| GCTCGATGTTTAAACCGTTT+AGG | - | chr5_4:58587481-58587500 | None:intergenic | 40.0% | |
| GGTTAAAGGAGATGCATCTA+GGG | - | chr5_4:58587558-58587577 | None:intergenic | 40.0% | |
| TGGTTAAAGGAGATGCATCT+AGG | - | chr5_4:58587559-58587578 | None:intergenic | 40.0% | |
| ! | AGCGATCTCATATGGCTTTA+TGG | + | chr5_4:58587689-58587708 | Msa0860090:CDS | 40.0% |
| AGTGATTAATAGGCTCCAGT+AGG | - | chr5_4:58588080-58588099 | None:intergenic | 40.0% | |
| TCTACGTGGCGTGATTTAAT+CGG | + | chr5_4:58588348-58588367 | Msa0860090:intron | 40.0% | |
| ! | CTCCGTCCATATGATCATTT+TGG | - | chr5_4:58589078-58589097 | None:intergenic | 40.0% |
| TGTCTTAATCGTAAGTGCAC+AGG | - | chr5_4:58589187-58589206 | None:intergenic | 40.0% | |
| CCGCAATAGAAACTCTTCTT+AGG | - | chr5_4:58589384-58589403 | None:intergenic | 40.0% | |
| !! | GATCTAGCTTTGAAGGAAAC+CGG | + | chr5_4:58589420-58589439 | Msa0860090:CDS | 40.0% |
| !! | TCTTTCTCTTTTGTGCTGGT+TGG | - | chr5_4:58589609-58589628 | None:intergenic | 40.0% |
| GATGAAGAACCAAAAAGCCA+AGG | + | chr5_4:58589630-58589649 | Msa0860090:CDS | 40.0% | |
| GCTATGAGCAAGTTCACTTT+AGG | + | chr5_4:58589768-58589787 | Msa0860090:CDS | 40.0% | |
| AGCACTCCTTTAACAGAACA+AGG | + | chr5_4:58589819-58589838 | Msa0860090:CDS | 40.0% | |
| TGACACTCATGAAGCTCATA+AGG | + | chr5_4:58589929-58589948 | Msa0860090:CDS | 40.0% | |
| CACAAGTGTTACGAGAAAGA+TGG | + | chr5_4:58590071-58590090 | Msa0860090:CDS | 40.0% | |
| ! | ATAATGTTTTTCCTCCCCGT+TGG | - | chr5_4:58590195-58590214 | None:intergenic | 40.0% |
| CATCAAAGGCTACGTAACTA+TGG | + | chr5_4:58590251-58590270 | Msa0860090:CDS | 40.0% | |
| TAACTATGGGAAGTCATCAG+AGG | + | chr5_4:58590265-58590284 | Msa0860090:CDS | 40.0% | |
| GAGGTAAAACCGCATATACT+TGG | + | chr5_4:58590284-58590303 | Msa0860090:CDS | 40.0% | |
| AACCGCATATACTTGGAAGT+AGG | + | chr5_4:58590291-58590310 | Msa0860090:CDS | 40.0% | |
| ACCGCATATACTTGGAAGTA+GGG | + | chr5_4:58590292-58590311 | Msa0860090:CDS | 40.0% | |
| TGTGTATATGCCATGCCATT+TGG | + | chr5_4:58590431-58590450 | Msa0860090:three_prime_UTR | 40.0% | |
| ! | ATGCCATGCCATTTGGTATA+AGG | + | chr5_4:58590438-58590457 | Msa0860090:three_prime_UTR | 40.0% |
| TTCTTGACACACATGACTAG+AGG | - | chr5_4:58590475-58590494 | None:intergenic | 40.0% | |
| TTATGTGTGTGAGAGAGAGT+TGG | + | chr5_4:58590546-58590565 | Msa0860090:three_prime_UTR | 40.0% | |
| TATGTGTGTGAGAGAGAGTT+GGG | + | chr5_4:58590547-58590566 | Msa0860090:three_prime_UTR | 40.0% | |
| ACATATGCCATTCCAGACAC+CGG | + | chr5_4:58587665-58587684 | Msa0860090:CDS | 45.0% | |
| AAGCCATATGAGATCGCTTC+CGG | - | chr5_4:58587687-58587706 | None:intergenic | 45.0% | |
| GATTAGATGGTACAAGGTGC+TGG | + | chr5_4:58588477-58588496 | Msa0860090:intron | 45.0% | |
| !! | CCAACAACTCCTTGGCTTTT+TGG | - | chr5_4:58589642-58589661 | None:intergenic | 45.0% |
| CCAAAAAGCCAAGGAGTTGT+TGG | + | chr5_4:58589639-58589658 | Msa0860090:CDS | 45.0% | |
| ATCCAAGTCCAACAACTCCT+TGG | - | chr5_4:58589650-58589669 | None:intergenic | 45.0% | |
| TCGTCTTTGCGTCGAAATTG+TGG | - | chr5_4:58589735-58589754 | None:intergenic | 45.0% | |
| ! | AGCAAGTTCACTTTAGGGGT+CGG | + | chr5_4:58589774-58589793 | Msa0860090:CDS | 45.0% |
| GGGAAAGAGGGAGAAAAGAA+AGG | + | chr5_4:58590041-58590060 | Msa0860090:CDS | 45.0% | |
| TTATACAGAATCCAACGGGG+AGG | + | chr5_4:58590181-58590200 | Msa0860090:CDS | 45.0% | |
| GCCCTACTTCCAAGTATATG+CGG | - | chr5_4:58590296-58590315 | None:intergenic | 45.0% | |
| ! | TAGGGCACAGATGGATTTCT+TGG | + | chr5_4:58590310-58590329 | Msa0860090:CDS | 45.0% |
| ! | CAGCCTTATACCAAATGGCA+TGG | - | chr5_4:58590444-58590463 | None:intergenic | 45.0% |
| !! | TTGAAAATTATTATAAATAA+GGG | - | chr5_4:58588648-58588667 | None:intergenic | 5.0% |
| !! | ATTGAAAATTATTATAAATA+AGG | - | chr5_4:58588649-58588668 | None:intergenic | 5.0% |
| !!! | ATATTTTTTTAAATAAATAG+GGG | - | chr5_4:58588921-58588940 | None:intergenic | 5.0% |
| !! | TATTAGCATCGGCAGGTGGT+TGG | - | chr5_4:58587451-58587470 | None:intergenic | 50.0% |
| !! | TGAGTATTAGCATCGGCAGG+TGG | - | chr5_4:58587455-58587474 | None:intergenic | 50.0% |
| ACACCGGAAGCGATCTCATA+TGG | + | chr5_4:58587681-58587700 | Msa0860090:CDS | 50.0% | |
| AGCCAAGGAGTTGTTGGACT+TGG | + | chr5_4:58589645-58589664 | Msa0860090:CDS | 50.0% | |
| GGAGTTGTTGGACTTGGATC+CGG | + | chr5_4:58589651-58589670 | Msa0860090:CDS | 50.0% | |
| GAGTTGTTGGACTTGGATCC+GGG | + | chr5_4:58589652-58589671 | Msa0860090:CDS | 50.0% | |
| AGTTGTTGGACTTGGATCCG+GGG | + | chr5_4:58589653-58589672 | Msa0860090:CDS | 50.0% | |
| AGGGGTCGGTGTGGAATTTA+AGG | + | chr5_4:58589788-58589807 | Msa0860090:CDS | 50.0% | |
| ACTTGGAAGTAGGGCACAGA+TGG | + | chr5_4:58590301-58590320 | Msa0860090:CDS | 50.0% | |
| ATCGCTTCCGGTGTCTGGAA+TGG | - | chr5_4:58587675-58587694 | None:intergenic | 55.0% | |
| ATGAGATCGCTTCCGGTGTC+TGG | - | chr5_4:58587680-58587699 | None:intergenic | 55.0% | |
| ! | GTTCACTTTAGGGGTCGGTG+TGG | + | chr5_4:58589779-58589798 | Msa0860090:CDS | 55.0% |
| ! | GAGAGAGTTGGGAGTGTGCA+TGG | + | chr5_4:58590558-58590577 | Msa0860090:three_prime_UTR | 55.0% |
| TGTTGGACTTGGATCCGGGG+AGG | + | chr5_4:58589656-58589675 | Msa0860090:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_4 | gene | 58587317 | 58590631 | 58587317 | ID=Msa0860090;Name=Msa0860090 |
| chr5_4 | mRNA | 58587317 | 58590631 | 58587317 | ID=Msa0860090-mRNA-1;Parent=Msa0860090;Name=Msa0860090-mRNA-1;_AED=0.00;_eAED=0.00;_QI=6|1|1|1|1|1|2|210|507 |
| chr5_4 | exon | 58587317 | 58587734 | 58587317 | ID=Msa0860090-mRNA-1:exon:17913;Parent=Msa0860090-mRNA-1 |
| chr5_4 | exon | 58589310 | 58590631 | 58589310 | ID=Msa0860090-mRNA-1:exon:17914;Parent=Msa0860090-mRNA-1 |
| chr5_4 | five_prime_UTR | 58587317 | 58587322 | 58587317 | ID=Msa0860090-mRNA-1:five_prime_utr;Parent=Msa0860090-mRNA-1 |
| chr5_4 | CDS | 58587323 | 58587734 | 58587323 | ID=Msa0860090-mRNA-1:cds;Parent=Msa0860090-mRNA-1 |
| chr5_4 | CDS | 58589310 | 58590421 | 58589310 | ID=Msa0860090-mRNA-1:cds;Parent=Msa0860090-mRNA-1 |
| chr5_4 | three_prime_UTR | 58590422 | 58590631 | 58590422 | ID=Msa0860090-mRNA-1:three_prime_utr;Parent=Msa0860090-mRNA-1 |
| Gene Sequence |
| Protein sequence |
