Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0739410 | TKY56988.1 | 31.442 | 423 | 219 | 18 | 51 | 466 | 39 | 397 | 1.59e-36 | 150 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0739410 | A0A392MSZ3 | 61.538 | 117 | 39 | 4 | 1 | 114 | 1 | 114 | 2.48e-25 | 110 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0008330 | Msa0739410 | 0.801892 | 7.266971e-49 | -8.615850e-47 |
| Msa0017420 | Msa0739410 | 0.819820 | 9.500243e-53 | -8.615850e-47 |
| Msa0021980 | Msa0739410 | 0.812056 | 5.135875e-51 | -8.615850e-47 |
| Msa0053480 | Msa0739410 | 0.819772 | 9.743014e-53 | -8.615850e-47 |
| Msa0067580 | Msa0739410 | 0.859739 | 3.358057e-63 | -8.615850e-47 |
| Msa0078370 | Msa0739410 | 0.820877 | 5.438674e-53 | -8.615850e-47 |
| Msa0094840 | Msa0739410 | 0.801098 | 1.056777e-48 | -8.615850e-47 |
| Msa0610850 | Msa0739410 | 0.853507 | 2.283331e-61 | -8.615850e-47 |
| Msa0641020 | Msa0739410 | 0.831164 | 1.949004e-55 | -8.615850e-47 |
| Msa0641030 | Msa0739410 | 0.829870 | 4.041374e-55 | -8.615850e-47 |
| Msa0645460 | Msa0739410 | 0.805313 | 1.417727e-49 | -8.615850e-47 |
| Msa0651340 | Msa0739410 | 0.801549 | 8.546137e-49 | -8.615850e-47 |
| Msa0679560 | Msa0739410 | 0.811760 | 5.959717e-51 | -8.615850e-47 |
| Msa0691140 | Msa0739410 | 0.824338 | 8.520574e-54 | -8.615850e-47 |
| Msa0693560 | Msa0739410 | 0.806355 | 8.565817e-50 | -8.615850e-47 |
| Msa0739410 | Msa0782340 | 0.869673 | 2.595259e-66 | -8.615850e-47 |
| Msa0739410 | Msa0860090 | 0.807794 | 4.246966e-50 | -8.615850e-47 |
| Msa0739410 | Msa0880080 | 0.816451 | 5.493366e-52 | -8.615850e-47 |
| Msa0739410 | Msa0883660 | 0.801687 | 8.004070e-49 | -8.615850e-47 |
| Msa0739410 | Msa0930090 | 0.801058 | 1.076953e-48 | -8.615850e-47 |
| Msa0739410 | Msa1009170 | 0.807449 | 5.028421e-50 | -8.615850e-47 |
| Msa0739410 | Msa1033670 | 0.804814 | 1.803373e-49 | -8.615850e-47 |
| Msa0739410 | Msa1055710 | 0.821072 | 4.904906e-53 | -8.615850e-47 |
| Msa0739410 | Msa1081600 | 0.811891 | 5.579680e-51 | -8.615850e-47 |
| Msa0739410 | Msa1125040 | 0.819201 | 1.315192e-52 | -8.615850e-47 |
| Msa0739410 | Msa1166370 | 0.825681 | 4.105978e-54 | -8.615850e-47 |
| Msa0739410 | Msa1201990 | 0.800445 | 1.436766e-48 | -8.615850e-47 |
| Msa0739410 | Msa1232330 | 0.820714 | 5.926782e-53 | -8.615850e-47 |
| Msa0739410 | Msa1233740 | 0.825589 | 4.317844e-54 | -8.615850e-47 |
| Msa0739410 | Msa1244300 | 0.825650 | 4.175839e-54 | -8.615850e-47 |
| Msa0739410 | Msa1275340 | 0.816734 | 4.747502e-52 | -8.615850e-47 |
| Msa0739410 | Msa1287160 | 0.801575 | 8.440685e-49 | -8.615850e-47 |
| Msa0739410 | Msa1295010 | 0.812192 | 4.797017e-51 | -8.615850e-47 |
| Msa0739410 | Msa1298910 | 0.805424 | 1.343966e-49 | -8.615850e-47 |
| Msa0739410 | Msa1307770 | 0.827414 | 1.585354e-54 | -8.615850e-47 |
| Msa0739410 | Msa1311550 | 0.808630 | 2.817598e-50 | -8.615850e-47 |
| Msa0739410 | Msa1329990 | 0.811171 | 7.998868e-51 | -8.615850e-47 |
| Msa0739410 | Msa1330530 | 0.805288 | 1.434932e-49 | -8.615850e-47 |
| Msa0739410 | Msa1343340 | 0.805874 | 1.081336e-49 | -8.615850e-47 |
| Msa0739410 | Msa1385600 | 0.802659 | 5.051382e-49 | -8.615850e-47 |
| Msa0739410 | Msa1403380 | 0.814562 | 1.446105e-51 | -8.615850e-47 |
| Msa0739410 | Msa1423080 | 0.807906 | 4.020714e-50 | -8.615850e-47 |
| Msa0739410 | Msa1445250 | 0.850600 | 1.528892e-60 | -8.615850e-47 |
| Msa0739410 | Msa1457070 | 0.842636 | 2.291505e-58 | -8.615850e-47 |
| Msa0126150 | Msa0739410 | 0.831102 | 2.019323e-55 | -8.615850e-47 |
| Msa0141680 | Msa0739410 | 0.838904 | 2.180070e-57 | -8.615850e-47 |
| Msa0155030 | Msa0739410 | 0.825236 | 5.232109e-54 | -8.615850e-47 |
| Msa0168590 | Msa0739410 | 0.816906 | 4.342939e-52 | -8.615850e-47 |
| Msa0227800 | Msa0739410 | 0.839588 | 1.448756e-57 | -8.615850e-47 |
| Msa0365360 | Msa0739410 | 0.862137 | 6.270482e-64 | -8.615850e-47 |
| Msa0389050 | Msa0739410 | 0.806668 | 7.355254e-50 | -8.615850e-47 |
| Msa0404870 | Msa0739410 | 0.803945 | 2.735853e-49 | -8.615850e-47 |
| Msa0439700 | Msa0739410 | 0.800220 | 1.596541e-48 | -8.615850e-47 |
| Msa0451370 | Msa0739410 | 0.801649 | 8.151238e-49 | -8.615850e-47 |
| Msa0452680 | Msa0739410 | 0.826238 | 3.027924e-54 | -8.615850e-47 |
| Msa0457370 | Msa0739410 | 0.859583 | 3.740481e-63 | -8.615850e-47 |
| Msa0260960 | Msa0739410 | 0.812317 | 4.505314e-51 | -8.615850e-47 |
| Msa0304990 | Msa0739410 | 0.857151 | 1.983818e-62 | -8.615850e-47 |
| Msa0334650 | Msa0739410 | 0.813925 | 1.999310e-51 | -8.615850e-47 |
| Msa0498920 | Msa0739410 | 0.803688 | 3.094248e-49 | -8.615850e-47 |
| Msa0513170 | Msa0739410 | 0.808786 | 2.610467e-50 | -8.615850e-47 |
| Msa0535050 | Msa0739410 | 0.800425 | 1.449744e-48 | -8.615850e-47 |
| Msa0544930 | Msa0739410 | 0.838356 | 3.018754e-57 | -8.615850e-47 |
| Msa0548720 | Msa0739410 | 0.817433 | 3.305535e-52 | -8.615850e-47 |
| Msa0575540 | Msa0739410 | 0.844001 | 9.903403e-59 | -8.615850e-47 |
| Msa0578890 | Msa0739410 | 0.812379 | 4.366799e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0739410 | MtrunA17_Chr8g0352661 | 26.066 | 422 | 239 | 19 | 66 | 478 | 75 | 432 | 8.60e-18 | 85.5 |
| Msa0739410 | MtrunA17_Chr6g0486981 | 25.121 | 414 | 245 | 19 | 69 | 478 | 80 | 432 | 1.55e-16 | 81.6 |
| Msa0739410 | MtrunA17_Chr2g0307991 | 24.163 | 418 | 247 | 15 | 66 | 478 | 48 | 400 | 4.40e-16 | 80.1 |
| Msa0739410 | MtrunA17_Chr2g0333991 | 25.000 | 320 | 204 | 12 | 93 | 406 | 99 | 388 | 6.38e-16 | 79.7 |
| Msa0739410 | MtrunA17_Chr2g0310831 | 26.316 | 418 | 227 | 20 | 63 | 468 | 80 | 428 | 1.47e-15 | 79.0 |
| Msa0739410 | MtrunA17_Chr8g0352671 | 27.794 | 349 | 191 | 17 | 68 | 400 | 80 | 383 | 1.77e-15 | 78.6 |
| Msa0739410 | MtrunA17_Chr2g0311451 | 24.138 | 319 | 208 | 12 | 93 | 406 | 99 | 388 | 2.39e-14 | 75.1 |
| Msa0739410 | MtrunA17_Chr2g0308001 | 24.862 | 362 | 204 | 14 | 65 | 406 | 46 | 359 | 2.66e-14 | 75.1 |
| Msa0739410 | MtrunA17_Chr5g0419291 | 23.953 | 430 | 240 | 18 | 66 | 482 | 75 | 430 | 5.18e-13 | 70.9 |
| Msa0739410 | MtrunA17_Chr1g0179091 | 28.906 | 256 | 135 | 13 | 227 | 478 | 150 | 362 | 1.13e-12 | 69.3 |
| Msa0739410 | MtrunA17_Chr2g0310801 | 25.532 | 423 | 227 | 21 | 68 | 477 | 81 | 428 | 1.34e-11 | 66.6 |
| Msa0739410 | MtrunA17_Chr7g0221681 | 23.585 | 318 | 205 | 11 | 94 | 401 | 84 | 373 | 2.41e-11 | 65.9 |
| Msa0739410 | MtrunA17_Chr6g0457401 | 24.460 | 417 | 244 | 16 | 71 | 480 | 82 | 434 | 3.98e-11 | 65.1 |
| Msa0739410 | MtrunA17_Chr3g0087851 | 24.781 | 343 | 205 | 14 | 78 | 406 | 85 | 388 | 5.87e-11 | 64.3 |
| Msa0739410 | MtrunA17_Chr6g0487471 | 25.957 | 470 | 244 | 22 | 23 | 478 | 51 | 430 | 8.49e-11 | 63.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0739410 | AT2G03200.1 | 26.724 | 348 | 192 | 16 | 78 | 406 | 107 | 410 | 3.59e-14 | 75.1 |
| Msa0739410 | AT2G35615.1 | 24.424 | 434 | 238 | 21 | 67 | 478 | 74 | 439 | 9.98e-11 | 64.3 |
Find 80 sgRNAs with CRISPR-Local
Find 169 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CATAAATCTTTATCTTTATC+TGG | 0.185237 | 5_1:-57633052 | None:intergenic |
| ACTAAATCAGAAGGAATTTA+TGG | 0.217782 | 5_1:+57633103 | Msa0739410:CDS |
| AATAATAAATGTGTGGTTAT+TGG | 0.225841 | 5_1:+57634104 | Msa0739410:three_prime_UTR |
| AACAACAACAACATCTCTTT+TGG | 0.262074 | 5_1:+57631127 | Msa0739410:CDS |
| TTATCTTTATCTGGACATTC+TGG | 0.270259 | 5_1:-57633043 | None:intergenic |
| GAATGATCTTGATCTGTTAA+AGG | 0.278274 | 5_1:-57633427 | None:intergenic |
| GCTATGAGCAAGTTCACTTT+TGG | 0.280909 | 5_1:+57633370 | Msa0739410:CDS |
| AGCGATCTCATATGGCTTTA+TGG | 0.283710 | 5_1:+57631301 | Msa0739410:CDS |
| ATGCCATGCCATTTGGTATA+AGG | 0.301822 | 5_1:+57634049 | Msa0739410:three_prime_UTR |
| AAGGTAATGATTATTGATTC+AGG | 0.310716 | 5_1:+57633550 | Msa0739410:CDS |
| TAGGGCACAGATGGATTTCT+TGG | 0.326909 | 5_1:+57633921 | Msa0739410:CDS |
| TGGAATGGCATATGTATCTT+TGG | 0.327787 | 5_1:-57631269 | None:intergenic |
| AAAATGAAGGGTATCATAAA+AGG | 0.339578 | 5_1:+57633839 | Msa0739410:CDS |
| TTTATGGTCCAGCTAATCTT+TGG | 0.343745 | 5_1:+57633119 | Msa0739410:CDS |
| GGAGTTGTTGGACTTGGATC+TGG | 0.346598 | 5_1:+57633253 | Msa0739410:CDS |
| ATGAGATCGCTTCCGGTGTC+TGG | 0.356075 | 5_1:-57631289 | None:intergenic |
| GCTCGATGTTTAAACCGTTT+AGG | 0.384979 | 5_1:-57631087 | None:intergenic |
| AAGAAGGAACATTGAACATT+GGG | 0.393773 | 5_1:+57633176 | Msa0739410:CDS |
| AAATAATAGCTCAACAGTTC+AGG | 0.397781 | 5_1:+57631200 | Msa0739410:CDS |
| TAAGCATAGTGAAGAATTAT+CGG | 0.403413 | 5_1:+57633996 | Msa0739410:CDS |
| CATAAAAGGCTGCGTAGCTA+TGG | 0.410348 | 5_1:+57633853 | Msa0739410:CDS |
| AGCCAAGGAGTTGTTGGACT+TGG | 0.412091 | 5_1:+57633247 | Msa0739410:CDS |
| AGCTATTATTTCAGATTCAA+TGG | 0.419760 | 5_1:-57631188 | None:intergenic |
| TGACGAGTGTCATCACTTAT+CGG | 0.419794 | 5_1:-57633520 | None:intergenic |
| AAGCCATATGAGATCGCTTC+CGG | 0.423924 | 5_1:-57631296 | None:intergenic |
| TTTGTAAACCAAAGATTAGC+TGG | 0.424694 | 5_1:-57633127 | None:intergenic |
| AAATTCCTTCTGATTTAGTA+AGG | 0.425067 | 5_1:-57633099 | None:intergenic |
| ACACTTACACCGCATATACT+TGG | 0.430867 | 5_1:+57633895 | Msa0739410:CDS |
| TCCAAGATGTGATGATTTGA+AGG | 0.431291 | 5_1:+57633006 | Msa0739410:CDS |
| TCCTTCAAATCATCACATCT+TGG | 0.433083 | 5_1:-57633007 | None:intergenic |
| AAAAGAATTAGATGGGAAAG+AGG | 0.438382 | 5_1:+57633630 | Msa0739410:CDS |
| TTCAGGTATCTCATGAAATT+CGG | 0.440637 | 5_1:+57631217 | Msa0739410:CDS |
| GGAATGGCATATGTATCTTT+GGG | 0.443169 | 5_1:-57631268 | None:intergenic |
| TGTGATGATTTGAAGGATAT+CGG | 0.443834 | 5_1:+57633013 | Msa0739410:CDS |
| TTATAATAACAATGCTATGA+TGG | 0.445293 | 5_1:+57634224 | Msa0739410:three_prime_UTR |
| ACACCGGAAGCGATCTCATA+TGG | 0.453558 | 5_1:+57631293 | Msa0739410:CDS |
| GGCACAGATGGATTTCTTGG+TGG | 0.464524 | 5_1:+57633924 | Msa0739410:CDS |
| ACTAGCATCGGCAAGTGGTT+GGG | 0.472163 | 5_1:-57631056 | None:intergenic |
| TACTAGCATCGGCAAGTGGT+TGG | 0.475730 | 5_1:-57631057 | None:intergenic |
| TGTATATATGCCATGCCATT+TGG | 0.479150 | 5_1:+57634042 | Msa0739410:three_prime_UTR |
| TGACACTCGTCAAGCTCATA+AGG | 0.481324 | 5_1:+57633531 | Msa0739410:CDS |
| GCTAGTACTCAAAACCTAAA+CGG | 0.482408 | 5_1:+57631073 | Msa0739410:CDS |
| ATCCAAGTCCAACAACTCCT+TGG | 0.492625 | 5_1:-57633249 | None:intergenic |
| AAAGAATTAGATGGGAAAGA+GGG | 0.492739 | 5_1:+57633631 | Msa0739410:CDS |
| CACAAGTGTTACGAGAAAGA+TGG | 0.496565 | 5_1:+57633673 | Msa0739410:CDS |
| AAAGAAGGAACATTGAACAT+TGG | 0.499741 | 5_1:+57633175 | Msa0739410:CDS |
| TAAGTACTACAATGCATGCA+TGG | 0.509293 | 5_1:-57630930 | None:intergenic |
| TATACTTATACAGATAAAGA+AGG | 0.512321 | 5_1:+57633778 | Msa0739410:CDS |
| CATCTTAAAAGTATTTATGT+AGG | 0.512889 | 5_1:+57633475 | Msa0739410:CDS |
| GGGAAAGAGGGAGAAAAGAA+AGG | 0.514345 | 5_1:+57633643 | Msa0739410:CDS |
| CTGCAATCGAAACTCTCCTT+AGG | 0.517885 | 5_1:-57632980 | None:intergenic |
| TGTTCCTTCTTTATCGCATG+TGG | 0.517983 | 5_1:-57633164 | None:intergenic |
| TATAGCAGCCTTATACCAAA+TGG | 0.522877 | 5_1:-57634057 | None:intergenic |
| ACTTGGAAGTAGGGCACAGA+TGG | 0.526284 | 5_1:+57633912 | Msa0739410:CDS |
| GAGTTGTTGGACTTGGATCT+GGG | 0.528801 | 5_1:+57633254 | Msa0739410:CDS |
| ATCGCTTCCGGTGTCTGGAA+TGG | 0.534464 | 5_1:-57631284 | None:intergenic |
| ATAAAAGGCTGCGTAGCTAT+GGG | 0.544718 | 5_1:+57633854 | Msa0739410:CDS |
| ACAAGTGTTACGAGAAAGAT+GGG | 0.545256 | 5_1:+57633674 | Msa0739410:CDS |
| ACCGCATATACTTGGAAGTA+GGG | 0.554688 | 5_1:+57633903 | Msa0739410:CDS |
| TATATATGCTTAACAGTGCA+AGG | 0.561224 | 5_1:+57633814 | Msa0739410:CDS |
| CACCGCATATACTTGGAAGT+AGG | 0.563765 | 5_1:+57633902 | Msa0739410:CDS |
| ACACATATTCTTATTCTGAA+AGG | 0.569596 | 5_1:-57634020 | None:intergenic |
| AAAGACCTTACTAAATCAGA+AGG | 0.577047 | 5_1:+57633094 | Msa0739410:CDS |
| GAAACCACATGCGATAAAGA+AGG | 0.587474 | 5_1:+57633160 | Msa0739410:CDS |
| TCGTTTCTGCGACAAAATTG+TGG | 0.590151 | 5_1:-57633334 | None:intergenic |
| AAGTACTACAATGCATGCAT+GGG | 0.594341 | 5_1:-57630929 | None:intergenic |
| GTAATGTGCATTAGTGTGCA+TGG | 0.594476 | 5_1:+57634187 | Msa0739410:three_prime_UTR |
| ACAGTGCAAGGAGAAAATGA+AGG | 0.599457 | 5_1:+57633826 | Msa0739410:CDS |
| CAGCCTTATACCAAATGGCA+TGG | 0.599563 | 5_1:-57634052 | None:intergenic |
| TTCTTGACACACATGACTAG+AGG | 0.604107 | 5_1:-57634083 | None:intergenic |
| AGCATGTATCAAGAAGCCTA+AGG | 0.607940 | 5_1:+57632964 | Msa0739410:CDS |
| AAGACTTGTGAATCTAACCT+AGG | 0.612320 | 5_1:+57631325 | Msa0739410:CDS |
| CAGTGCAAGGAGAAAATGAA+GGG | 0.614413 | 5_1:+57633827 | Msa0739410:CDS |
| TGAGTACTAGCATCGGCAAG+TGG | 0.618274 | 5_1:-57631061 | None:intergenic |
| ATACTTATACAGATAAAGAA+GGG | 0.623826 | 5_1:+57633779 | Msa0739410:CDS |
| GCCCTACTTCCAAGTATATG+CGG | 0.644753 | 5_1:-57633904 | None:intergenic |
| ACATATGCCATTCCAGACAC+CGG | 0.654784 | 5_1:+57631277 | Msa0739410:CDS |
| TAGCTATGGGAAGTCAGAGG+AGG | 0.673118 | 5_1:+57633867 | Msa0739410:CDS |
| GCGTAGCTATGGGAAGTCAG+AGG | 0.678639 | 5_1:+57633864 | Msa0739410:CDS |
| TGTCAAGAATAATAAATGTG+TGG | 0.688701 | 5_1:+57634097 | Msa0739410:three_prime_UTR |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATATATTTTTTAAATAAATA+GGG | - | chr5_1:57632523-57632542 | None:intergenic | 0.0% |
| !!! | AATATATTTTTTAAATAAAT+AGG | - | chr5_1:57632524-57632543 | None:intergenic | 0.0% |
| !! | TGAAAATTATTATAAATAAG+GGG | - | chr5_1:57632253-57632272 | None:intergenic | 10.0% |
| !! | TGGATAAAATTAAAAAAAAA+CGG | + | chr5_1:57632292-57632311 | Msa0739410:intron | 10.0% |
| !!! | CAAAAATTGTTTTATAAAAA+GGG | - | chr5_1:57632463-57632482 | None:intergenic | 10.0% |
| !!! | ACAAAAATTGTTTTATAAAA+AGG | - | chr5_1:57632464-57632483 | None:intergenic | 10.0% |
| !!! | ATTTGTTTTTCTTATATTAA+AGG | + | chr5_1:57632887-57632906 | Msa0739410:intron | 10.0% |
| !! | AATCCAACATTAATTAAATT+TGG | + | chr5_1:57631413-57631432 | Msa0739410:intron | 15.0% |
| !! | AATCATTTATTTGTTTGAAA+TGG | + | chr5_1:57631583-57631602 | Msa0739410:intron | 15.0% |
| !!! | AATTAATTTCTATGTTTTGA+AGG | + | chr5_1:57631843-57631862 | Msa0739410:intron | 15.0% |
| !! | GTAATATAAATTAGATTAGA+TGG | + | chr5_1:57632067-57632086 | Msa0739410:intron | 15.0% |
| !! | ATAGAAAAATATGTTTCATT+AGG | + | chr5_1:57632366-57632385 | Msa0739410:intron | 15.0% |
| !! | TAGAAAAATATGTTTCATTA+GGG | + | chr5_1:57632367-57632386 | Msa0739410:intron | 15.0% |
| !! | TTCTCAAAAATCTTATAAAT+AGG | - | chr5_1:57632430-57632449 | None:intergenic | 15.0% |
| !!! | GATAATATGAGAATTTTTTT+TGG | - | chr5_1:57633312-57633331 | None:intergenic | 15.0% |
| !! | TGACCAAATTTAATTAATGT+TGG | - | chr5_1:57631419-57631438 | None:intergenic | 20.0% |
| !! | TTATTTAGATTCACATGTAT+GGG | - | chr5_1:57631878-57631897 | None:intergenic | 20.0% |
| !! | TTTATTTAGATTCACATGTA+TGG | - | chr5_1:57631879-57631898 | None:intergenic | 20.0% |
| !!! | ATAAGGGGTTTTTTTTTTTT+TGG | - | chr5_1:57632238-57632257 | None:intergenic | 20.0% |
| !! | AATTCCTCAATTAAAACATT+TGG | + | chr5_1:57632272-57632291 | Msa0739410:intron | 20.0% |
| !!! | TTATCCAAATGTTTTAATTG+AGG | - | chr5_1:57632279-57632298 | None:intergenic | 20.0% |
| !!! | ATTTTACCAAAATGATCATA+TGG | + | chr5_1:57632668-57632687 | Msa0739410:intron | 20.0% |
| !! | ACCAAAATAACCATATATTT+AGG | + | chr5_1:57632731-57632750 | Msa0739410:intron | 20.0% |
| !! | CCAAAATAACCATATATTTA+GGG | + | chr5_1:57632732-57632751 | Msa0739410:intron | 20.0% |
| !!! | TGTTTTTCTTATATTAAAGG+TGG | + | chr5_1:57632890-57632909 | Msa0739410:intron | 20.0% |
| !! | CATAAATCTTTATCTTTATC+TGG | - | chr5_1:57633055-57633074 | None:intergenic | 20.0% |
| !!! | CTACATAAATACTTTTAAGA+TGG | - | chr5_1:57633477-57633496 | None:intergenic | 20.0% |
| !!! | CATCTTAAAAGTATTTATGT+AGG | + | chr5_1:57633475-57633494 | Msa0739410:CDS | 20.0% |
| !! | AAAGTAGAAAAAGAATTAGA+TGG | + | chr5_1:57633622-57633641 | Msa0739410:CDS | 20.0% |
| !! | AAGTAGAAAAAGAATTAGAT+GGG | + | chr5_1:57633623-57633642 | Msa0739410:CDS | 20.0% |
| !!! | TGATATTTTCTTCAATTTCT+CGG | - | chr5_1:57633704-57633723 | None:intergenic | 20.0% |
| !! | TATACTTATACAGATAAAGA+AGG | + | chr5_1:57633778-57633797 | Msa0739410:CDS | 20.0% |
| !! | ATACTTATACAGATAAAGAA+GGG | + | chr5_1:57633779-57633798 | Msa0739410:CDS | 20.0% |
| !! | AATAATAAATGTGTGGTTAT+TGG | + | chr5_1:57634104-57634123 | Msa0739410:three_prime_UTR | 20.0% |
| !! | TTATAATAACAATGCTATGA+TGG | + | chr5_1:57634224-57634243 | Msa0739410:three_prime_UTR | 20.0% |
| !!! | TGTGAAAAAGAATGGTTTTA+GGG | - | chr5_1:57631002-57631021 | None:intergenic | 25.0% |
| !!! | AGTTTTAGTGTGAAAAAGAA+TGG | - | chr5_1:57631010-57631029 | None:intergenic | 25.0% |
| ! | AGCTATTATTTCAGATTCAA+TGG | - | chr5_1:57631191-57631210 | None:intergenic | 25.0% |
| ! | AAAGTAAATTGGATTTACCT+AGG | - | chr5_1:57631345-57631364 | None:intergenic | 25.0% |
| ! | AATCAAACCAATAACTAAGA+AGG | + | chr5_1:57631518-57631537 | Msa0739410:intron | 25.0% |
| ! | TTTAGATGAAACTATTCTAC+AGG | - | chr5_1:57631624-57631643 | None:intergenic | 25.0% |
| ! | TATTTAGATTCACATGTATG+GGG | - | chr5_1:57631877-57631896 | None:intergenic | 25.0% |
| ! | AAATTAGATTAGATGGTACA+AGG | + | chr5_1:57632074-57632093 | Msa0739410:intron | 25.0% |
| ! | AAAAATCAAGGTCATATAAC+TGG | - | chr5_1:57632107-57632126 | None:intergenic | 25.0% |
| !! | CTCTGAAGAAAAAAAAATCA+AGG | - | chr5_1:57632119-57632138 | None:intergenic | 25.0% |
| ! | CAAATTGATGTTATAAGTCA+AGG | - | chr5_1:57632149-57632168 | None:intergenic | 25.0% |
| ! | CTTGACTTATAACATCAATT+TGG | + | chr5_1:57632147-57632166 | Msa0739410:intron | 25.0% |
| !!! | TTTTTTGGAGAGGATAAATA+AGG | - | chr5_1:57632223-57632242 | None:intergenic | 25.0% |
| !!! | AGTTAAAAAAAGTGTTACGT+CGG | + | chr5_1:57632402-57632421 | Msa0739410:intron | 25.0% |
| !! | TTAAATAAATAGGGGTATGT+TGG | - | chr5_1:57632514-57632533 | None:intergenic | 25.0% |
| !!! | GATCATTTTGGTAAAATCAT+GGG | - | chr5_1:57632665-57632684 | None:intergenic | 25.0% |
| !!! | TGATCATTTTGGTAAAATCA+TGG | - | chr5_1:57632666-57632685 | None:intergenic | 25.0% |
| !! | CCCTAAATATATGGTTATTT+TGG | - | chr5_1:57632735-57632754 | None:intergenic | 25.0% |
| !! | AAGATACAATTTTCTCTCTA+TGG | + | chr5_1:57632826-57632845 | Msa0739410:intron | 25.0% |
| ! | AAATTCCTTCTGATTTAGTA+AGG | - | chr5_1:57633102-57633121 | None:intergenic | 25.0% |
| ! | ACTAAATCAGAAGGAATTTA+TGG | + | chr5_1:57633103-57633122 | Msa0739410:CDS | 25.0% |
| !!! | AAGGTAATGATTATTGATTC+AGG | + | chr5_1:57633550-57633569 | Msa0739410:CDS | 25.0% |
| !!! | AAAATGAAGGGTATCATAAA+AGG | + | chr5_1:57633839-57633858 | Msa0739410:CDS | 25.0% |
| !!! | AATTAATAGAGTGTCTTTTG+AGG | + | chr5_1:57633966-57633985 | Msa0739410:CDS | 25.0% |
| ! | TAAGCATAGTGAAGAATTAT+CGG | + | chr5_1:57633996-57634015 | Msa0739410:CDS | 25.0% |
| ! | ACACATATTCTTATTCTGAA+AGG | - | chr5_1:57634023-57634042 | None:intergenic | 25.0% |
| ! | TGTCAAGAATAATAAATGTG+TGG | + | chr5_1:57634097-57634116 | Msa0739410:three_prime_UTR | 25.0% |
| !! | GTATGTAGTTTTCAATAAGT+TGG | + | chr5_1:57634126-57634145 | Msa0739410:three_prime_UTR | 25.0% |
| !!! | GTGAAAAAGAATGGTTTTAG+GGG | - | chr5_1:57631001-57631020 | None:intergenic | 30.0% |
| ! | GTGTGAAAAAGAATGGTTTT+AGG | - | chr5_1:57631003-57631022 | None:intergenic | 30.0% |
| ! | AACAACAACAACATCTCTTT+TGG | + | chr5_1:57631127-57631146 | Msa0739410:CDS | 30.0% |
| GGTTAAAAAAGATGCATCTA+GGG | - | chr5_1:57631170-57631189 | None:intergenic | 30.0% | |
| TGGTTAAAAAAGATGCATCT+AGG | - | chr5_1:57631171-57631190 | None:intergenic | 30.0% | |
| AAATAATAGCTCAACAGTTC+AGG | + | chr5_1:57631200-57631219 | Msa0739410:CDS | 30.0% | |
| TTCAGGTATCTCATGAAATT+CGG | + | chr5_1:57631217-57631236 | Msa0739410:CDS | 30.0% | |
| !! | TTCGGTGTTAAAAATTACGA+TGG | + | chr5_1:57631235-57631254 | Msa0739410:CDS | 30.0% |
| AAGTCAACCTTCTTAGTTAT+TGG | - | chr5_1:57631528-57631547 | None:intergenic | 30.0% | |
| AATAACTAAGAAGGTTGACT+TGG | + | chr5_1:57631527-57631546 | Msa0739410:intron | 30.0% | |
| ! | AAACAACTGATTCATCCTAT+TGG | + | chr5_1:57631664-57631683 | Msa0739410:intron | 30.0% |
| AGTGATTAATAAGCTCCAAT+AGG | - | chr5_1:57631682-57631701 | None:intergenic | 30.0% | |
| !!! | CGCTATAATGTCACTTTTAT+AGG | + | chr5_1:57631902-57631921 | Msa0739410:intron | 30.0% |
| TTCAAAGTGAAAGTTATTGC+AGG | + | chr5_1:57632045-57632064 | Msa0739410:intron | 30.0% | |
| !!! | GGGTTTTTTTTTTTTTGGAG+AGG | - | chr5_1:57632233-57632252 | None:intergenic | 30.0% |
| ! | CTTTAAGAGAGAGTATGTTT+AGG | - | chr5_1:57632578-57632597 | None:intergenic | 30.0% |
| TACCAAAATGATCATATGGA+CGG | + | chr5_1:57632672-57632691 | Msa0739410:intron | 30.0% | |
| !!! | GGTTATTTTGGTTAAATCAC+AGG | - | chr5_1:57632723-57632742 | None:intergenic | 30.0% |
| AACCATATATTTAGGGATAG+AGG | + | chr5_1:57632739-57632758 | Msa0739410:intron | 30.0% | |
| TACCTCTATCCCTAAATATA+TGG | - | chr5_1:57632744-57632763 | None:intergenic | 30.0% | |
| TGTGATGATTTGAAGGATAT+CGG | + | chr5_1:57633013-57633032 | Msa0739410:CDS | 30.0% | |
| TTATCTTTATCTGGACATTC+TGG | - | chr5_1:57633046-57633065 | None:intergenic | 30.0% | |
| AAAGACCTTACTAAATCAGA+AGG | + | chr5_1:57633094-57633113 | Msa0739410:CDS | 30.0% | |
| TTTGTAAACCAAAGATTAGC+TGG | - | chr5_1:57633130-57633149 | None:intergenic | 30.0% | |
| AAAGAAGGAACATTGAACAT+TGG | + | chr5_1:57633175-57633194 | Msa0739410:CDS | 30.0% | |
| AAGAAGGAACATTGAACATT+GGG | + | chr5_1:57633176-57633195 | Msa0739410:CDS | 30.0% | |
| GAATGATCTTGATCTGTTAA+AGG | - | chr5_1:57633430-57633449 | None:intergenic | 30.0% | |
| AAAAGAATTAGATGGGAAAG+AGG | + | chr5_1:57633630-57633649 | Msa0739410:CDS | 30.0% | |
| AAAGAATTAGATGGGAAAGA+GGG | + | chr5_1:57633631-57633650 | Msa0739410:CDS | 30.0% | |
| !! | AGACAAAAATTGAGTTGAAG+AGG | + | chr5_1:57633737-57633756 | Msa0739410:CDS | 30.0% |
| !! | GACAAAAATTGAGTTGAAGA+GGG | + | chr5_1:57633738-57633757 | Msa0739410:CDS | 30.0% |
| TATATATGCTTAACAGTGCA+AGG | + | chr5_1:57633814-57633833 | Msa0739410:CDS | 30.0% | |
| TAAGTACTACAATGCATGCA+TGG | - | chr5_1:57630933-57630952 | None:intergenic | 35.0% | |
| !!! | TAGGTTTTGAGTACTAGCAT+CGG | - | chr5_1:57631071-57631090 | None:intergenic | 35.0% |
| GCTAGTACTCAAAACCTAAA+CGG | + | chr5_1:57631073-57631092 | Msa0739410:CDS | 35.0% | |
| GGAATGGCATATGTATCTTT+GGG | - | chr5_1:57631271-57631290 | None:intergenic | 35.0% | |
| TGGAATGGCATATGTATCTT+TGG | - | chr5_1:57631272-57631291 | None:intergenic | 35.0% | |
| AAGACTTGTGAATCTAACCT+AGG | + | chr5_1:57631325-57631344 | Msa0739410:CDS | 35.0% | |
| TCTACGTGACGTGATTTAAT+CGG | + | chr5_1:57631952-57631971 | Msa0739410:intron | 35.0% | |
| TTGGTAAAATCATGGGAATG+AGG | - | chr5_1:57632658-57632677 | None:intergenic | 35.0% | |
| ACCAAAATGATCATATGGAC+GGG | + | chr5_1:57632673-57632692 | Msa0739410:intron | 35.0% | |
| TGTCTTAATCGTAAGTGCAT+AGG | - | chr5_1:57632786-57632805 | None:intergenic | 35.0% | |
| TCCAAGATGTGATGATTTGA+AGG | + | chr5_1:57633006-57633025 | Msa0739410:CDS | 35.0% | |
| TCCTTCAAATCATCACATCT+TGG | - | chr5_1:57633010-57633029 | None:intergenic | 35.0% | |
| TTTATGGTCCAGCTAATCTT+TGG | + | chr5_1:57633119-57633138 | Msa0739410:CDS | 35.0% | |
| ! | ATCATCTATCTCTTTTGTGC+TGG | - | chr5_1:57633215-57633234 | None:intergenic | 35.0% |
| !! | CTATGAGCAAGTTCACTTTT+GGG | + | chr5_1:57633371-57633390 | Msa0739410:CDS | 35.0% |
| ACAAGTGTTACGAGAAAGAT+GGG | + | chr5_1:57633674-57633693 | Msa0739410:CDS | 35.0% | |
| TGTATATATGCCATGCCATT+TGG | + | chr5_1:57634042-57634061 | Msa0739410:three_prime_UTR | 35.0% | |
| ! | TATAGCAGCCTTATACCAAA+TGG | - | chr5_1:57634060-57634079 | None:intergenic | 35.0% |
| !!! | GGTTTTAGGGGATGCATTTT+GGG | - | chr5_1:57630989-57631008 | None:intergenic | 40.0% |
| !!! | TGGTTTTAGGGGATGCATTT+TGG | - | chr5_1:57630990-57631009 | None:intergenic | 40.0% |
| GCTCGATGTTTAAACCGTTT+AGG | - | chr5_1:57631090-57631109 | None:intergenic | 40.0% | |
| ! | AGCGATCTCATATGGCTTTA+TGG | + | chr5_1:57631301-57631320 | Msa0739410:CDS | 40.0% |
| CCAAAATGATCATATGGACG+GGG | + | chr5_1:57632674-57632693 | Msa0739410:intron | 40.0% | |
| AGCATGTATCAAGAAGCCTA+AGG | + | chr5_1:57632964-57632983 | Msa0739410:CDS | 40.0% | |
| GAAACCACATGCGATAAAGA+AGG | + | chr5_1:57633160-57633179 | Msa0739410:CDS | 40.0% | |
| TGTTCCTTCTTTATCGCATG+TGG | - | chr5_1:57633167-57633186 | None:intergenic | 40.0% | |
| !! | TCTATCTCTTTTGTGCTGGT+TGG | - | chr5_1:57633211-57633230 | None:intergenic | 40.0% |
| GATGAAGAACCAAAAAGCCA+AGG | + | chr5_1:57633232-57633251 | Msa0739410:CDS | 40.0% | |
| TCGTTTCTGCGACAAAATTG+TGG | - | chr5_1:57633337-57633356 | None:intergenic | 40.0% | |
| ! | GCTATGAGCAAGTTCACTTT+TGG | + | chr5_1:57633370-57633389 | Msa0739410:CDS | 40.0% |
| TGACGAGTGTCATCACTTAT+CGG | - | chr5_1:57633523-57633542 | None:intergenic | 40.0% | |
| CACAAGTGTTACGAGAAAGA+TGG | + | chr5_1:57633673-57633692 | Msa0739410:CDS | 40.0% | |
| ACAGTGCAAGGAGAAAATGA+AGG | + | chr5_1:57633826-57633845 | Msa0739410:CDS | 40.0% | |
| CAGTGCAAGGAGAAAATGAA+GGG | + | chr5_1:57633827-57633846 | Msa0739410:CDS | 40.0% | |
| ATAAAAGGCTGCGTAGCTAT+GGG | + | chr5_1:57633854-57633873 | Msa0739410:CDS | 40.0% | |
| ACACTTACACCGCATATACT+TGG | + | chr5_1:57633895-57633914 | Msa0739410:CDS | 40.0% | |
| ACCGCATATACTTGGAAGTA+GGG | + | chr5_1:57633903-57633922 | Msa0739410:CDS | 40.0% | |
| ! | ATGCCATGCCATTTGGTATA+AGG | + | chr5_1:57634049-57634068 | Msa0739410:three_prime_UTR | 40.0% |
| TTCTTGACACACATGACTAG+AGG | - | chr5_1:57634086-57634105 | None:intergenic | 40.0% | |
| GTAATGTGCATTAGTGTGCA+TGG | + | chr5_1:57634187-57634206 | Msa0739410:three_prime_UTR | 40.0% | |
| ACATATGCCATTCCAGACAC+CGG | + | chr5_1:57631277-57631296 | Msa0739410:CDS | 45.0% | |
| AAGCCATATGAGATCGCTTC+CGG | - | chr5_1:57631299-57631318 | None:intergenic | 45.0% | |
| ! | CCCCGTCCATATGATCATTT+TGG | - | chr5_1:57632677-57632696 | None:intergenic | 45.0% |
| CTGCAATCGAAACTCTCCTT+AGG | - | chr5_1:57632983-57633002 | None:intergenic | 45.0% | |
| !! | CCAACAACTCCTTGGCTTTT+TGG | - | chr5_1:57633244-57633263 | None:intergenic | 45.0% |
| CCAAAAAGCCAAGGAGTTGT+TGG | + | chr5_1:57633241-57633260 | Msa0739410:CDS | 45.0% | |
| ATCCAAGTCCAACAACTCCT+TGG | - | chr5_1:57633252-57633271 | None:intergenic | 45.0% | |
| GAGTTGTTGGACTTGGATCT+GGG | + | chr5_1:57633254-57633273 | Msa0739410:CDS | 45.0% | |
| !! | AGCAAGTTCACTTTTGGGCA+CGG | + | chr5_1:57633376-57633395 | Msa0739410:CDS | 45.0% |
| TGACACTCGTCAAGCTCATA+AGG | + | chr5_1:57633531-57633550 | Msa0739410:CDS | 45.0% | |
| GGGAAAGAGGGAGAAAAGAA+AGG | + | chr5_1:57633643-57633662 | Msa0739410:CDS | 45.0% | |
| CATAAAAGGCTGCGTAGCTA+TGG | + | chr5_1:57633853-57633872 | Msa0739410:CDS | 45.0% | |
| CACCGCATATACTTGGAAGT+AGG | + | chr5_1:57633902-57633921 | Msa0739410:CDS | 45.0% | |
| GCCCTACTTCCAAGTATATG+CGG | - | chr5_1:57633907-57633926 | None:intergenic | 45.0% | |
| ! | TAGGGCACAGATGGATTTCT+TGG | + | chr5_1:57633921-57633940 | Msa0739410:CDS | 45.0% |
| ! | CAGCCTTATACCAAATGGCA+TGG | - | chr5_1:57634055-57634074 | None:intergenic | 45.0% |
| !! | ATTAAAAAAATAAAGTAAAT+TGG | - | chr5_1:57631356-57631375 | None:intergenic | 5.0% |
| !! | TTGAAAATTATTATAAATAA+GGG | - | chr5_1:57632254-57632273 | None:intergenic | 5.0% |
| !! | ATTGAAAATTATTATAAATA+AGG | - | chr5_1:57632255-57632274 | None:intergenic | 5.0% |
| !! | TAAAAAATAATTAATATAGT+TGG | - | chr5_1:57632491-57632510 | None:intergenic | 5.0% |
| !!! | TATATTTTTTAAATAAATAG+GGG | - | chr5_1:57632522-57632541 | None:intergenic | 5.0% |
| !! | ACTAGCATCGGCAAGTGGTT+GGG | - | chr5_1:57631059-57631078 | None:intergenic | 50.0% |
| !! | TACTAGCATCGGCAAGTGGT+TGG | - | chr5_1:57631060-57631079 | None:intergenic | 50.0% |
| !! | TGAGTACTAGCATCGGCAAG+TGG | - | chr5_1:57631064-57631083 | None:intergenic | 50.0% |
| ACACCGGAAGCGATCTCATA+TGG | + | chr5_1:57631293-57631312 | Msa0739410:CDS | 50.0% | |
| AGCCAAGGAGTTGTTGGACT+TGG | + | chr5_1:57633247-57633266 | Msa0739410:CDS | 50.0% | |
| GGAGTTGTTGGACTTGGATC+TGG | + | chr5_1:57633253-57633272 | Msa0739410:CDS | 50.0% | |
| TAGCTATGGGAAGTCAGAGG+AGG | + | chr5_1:57633867-57633886 | Msa0739410:CDS | 50.0% | |
| ACTTGGAAGTAGGGCACAGA+TGG | + | chr5_1:57633912-57633931 | Msa0739410:CDS | 50.0% | |
| ! | GGCACAGATGGATTTCTTGG+TGG | + | chr5_1:57633924-57633943 | Msa0739410:CDS | 50.0% |
| ATCGCTTCCGGTGTCTGGAA+TGG | - | chr5_1:57631287-57631306 | None:intergenic | 55.0% | |
| ATGAGATCGCTTCCGGTGTC+TGG | - | chr5_1:57631292-57631311 | None:intergenic | 55.0% | |
| !! | GTTCACTTTTGGGCACGGTG+TGG | + | chr5_1:57633381-57633400 | Msa0739410:CDS | 55.0% |
| GCGTAGCTATGGGAAGTCAG+AGG | + | chr5_1:57633864-57633883 | Msa0739410:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_1 | gene | 57630930 | 57634258 | 57630930 | ID=Msa0739410;Name=Msa0739410 |
| chr5_1 | mRNA | 57630930 | 57634258 | 57630930 | ID=Msa0739410-mRNA-1;Parent=Msa0739410;Name=Msa0739410-mRNA-1;_AED=0.00;_eAED=0.00;_QI=62|1|1|1|1|1|2|226|492 |
| chr5_1 | exon | 57630930 | 57631346 | 57630930 | ID=Msa0739410-mRNA-1:exon:16380;Parent=Msa0739410-mRNA-1 |
| chr5_1 | exon | 57632909 | 57634258 | 57632909 | ID=Msa0739410-mRNA-1:exon:16381;Parent=Msa0739410-mRNA-1 |
| chr5_1 | five_prime_UTR | 57630930 | 57630991 | 57630930 | ID=Msa0739410-mRNA-1:five_prime_utr;Parent=Msa0739410-mRNA-1 |
| chr5_1 | CDS | 57630992 | 57631346 | 57630992 | ID=Msa0739410-mRNA-1:cds;Parent=Msa0739410-mRNA-1 |
| chr5_1 | CDS | 57632909 | 57634032 | 57632909 | ID=Msa0739410-mRNA-1:cds;Parent=Msa0739410-mRNA-1 |
| chr5_1 | three_prime_UTR | 57634033 | 57634258 | 57634033 | ID=Msa0739410-mRNA-1:three_prime_utr;Parent=Msa0739410-mRNA-1 |
| Gene Sequence |
| Protein sequence |
