Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0860780 | XP_003617057.2 | 95.669 | 254 | 11 | 0 | 1 | 254 | 1 | 254 | 1.39e-153 | 437 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0860780 | sp|D5K211|RTM2A_ARATH | 35.227 | 88 | 56 | 1 | 14 | 100 | 16 | 103 | 3.38e-12 | 68.9 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0860780 | G7KHG4 | 95.669 | 254 | 11 | 0 | 1 | 254 | 1 | 254 | 6.65e-154 | 437 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0472950 | Msa0860780 | 0.816256 | 6.073810e-52 | -8.615850e-47 |
| Msa0562620 | Msa0860780 | 0.812793 | 3.545703e-51 | -8.615850e-47 |
| Msa0860780 | Msa0860800 | 0.829975 | 3.809255e-55 | -8.615850e-47 |
| Msa0860780 | Msa1284120 | 0.809075 | 2.263391e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0860780 | MtrunA17_Chr5g0440291 | 95.669 | 254 | 11 | 0 | 1 | 254 | 1 | 254 | 1.28e-157 | 437 |
| Msa0860780 | MtrunA17_Chr5g0439551 | 89.764 | 127 | 13 | 0 | 62 | 188 | 1 | 127 | 8.89e-69 | 208 |
| Msa0860780 | MtrunA17_Chr5g0440311 | 44.706 | 170 | 85 | 5 | 3 | 169 | 1 | 164 | 2.88e-35 | 127 |
| Msa0860780 | MtrunA17_Chr5g0440321 | 31.970 | 269 | 148 | 9 | 3 | 243 | 1 | 262 | 2.58e-29 | 111 |
| Msa0860780 | MtrunA17_Chr7g0253661 | 41.111 | 90 | 53 | 0 | 11 | 100 | 8 | 97 | 1.28e-19 | 84.0 |
| Msa0860780 | MtrunA17_Chr6g0481571 | 40.816 | 98 | 58 | 0 | 10 | 107 | 10 | 107 | 4.76e-19 | 81.6 |
| Msa0860780 | MtrunA17_Chr4g0060201 | 26.160 | 237 | 156 | 5 | 13 | 237 | 21 | 250 | 2.62e-16 | 76.3 |
| Msa0860780 | MtrunA17_Chr8g0356011 | 37.778 | 90 | 55 | 1 | 12 | 100 | 22 | 111 | 1.30e-15 | 75.9 |
| Msa0860780 | MtrunA17_Chr3g0078561 | 32.331 | 133 | 77 | 5 | 13 | 134 | 19 | 149 | 1.23e-13 | 69.7 |
| Msa0860780 | MtrunA17_Chr1g0188351 | 33.043 | 115 | 64 | 3 | 22 | 125 | 81 | 193 | 5.62e-13 | 65.9 |
| Msa0860780 | MtrunA17_Chr1g0188321 | 32.174 | 115 | 65 | 3 | 22 | 125 | 78 | 190 | 6.69e-12 | 62.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0860780 | AT2G27140.1 | 37.696 | 191 | 98 | 5 | 10 | 182 | 10 | 197 | 5.04e-33 | 120 |
| Msa0860780 | AT5G20970.1 | 34.538 | 249 | 133 | 6 | 11 | 243 | 7 | 241 | 3.00e-29 | 110 |
| Msa0860780 | AT1G54400.1 | 33.929 | 112 | 71 | 2 | 13 | 121 | 12 | 123 | 1.78e-13 | 67.4 |
| Msa0860780 | AT5G04890.1 | 35.227 | 88 | 56 | 1 | 14 | 100 | 16 | 103 | 4.48e-13 | 68.6 |
| Msa0860780 | AT4G10250.1 | 38.462 | 91 | 45 | 2 | 22 | 101 | 74 | 164 | 4.85e-12 | 63.5 |
Find 44 sgRNAs with CRISPR-Local
Find 128 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAGAGAATAAAGAATGTTTA+AGG | 0.150469 | 5_4:+59825864 | Msa0860780:three_prime_UTR |
| TAAGATACCAGCTTCAAATT+TGG | 0.240286 | 5_4:-59825265 | None:intergenic |
| ACTTCTTCAATTTCTTTGTT+TGG | 0.273292 | 5_4:-59825456 | None:intergenic |
| TTCTTGGTGTGTTGTTGGTT+TGG | 0.349383 | 5_4:-59825340 | None:intergenic |
| AAAGAAGCTGGTTAATTTGT+TGG | 0.363334 | 5_4:+59825656 | Msa0860780:CDS |
| TGGTGTGTTGTTGGTTTGGT+TGG | 0.367044 | 5_4:-59825336 | None:intergenic |
| GGTTTCTGAGGAATTGTTGC+TGG | 0.368359 | 5_4:-59825381 | None:intergenic |
| ACACTTATTCTTATGCTTCC+AGG | 0.372973 | 5_4:+59824779 | Msa0860780:CDS |
| CGCCACTAACCCTTAGCACT+CGG | 0.385370 | 5_4:-59825158 | None:intergenic |
| TGAGGTTCTTGGTGTGTTGT+TGG | 0.395378 | 5_4:-59825345 | None:intergenic |
| GTTGTTGGTTTGGTTGGAGT+TGG | 0.401135 | 5_4:-59825330 | None:intergenic |
| AATTTGAACCACCCTCTGAT+TGG | 0.401334 | 5_4:+59824735 | Msa0860780:CDS |
| AATTAATCAATTACAACTCT+TGG | 0.411666 | 5_4:-59825758 | None:intergenic |
| TAATTTGTCTAAGCTCTTGT+TGG | 0.418513 | 5_4:-59824614 | None:intergenic |
| AAAGTCACTGACTATGGAAA+TGG | 0.440984 | 5_4:+59825569 | Msa0860780:CDS |
| ATTTGAACCACCCTCTGATT+GGG | 0.445092 | 5_4:+59824736 | Msa0860780:CDS |
| TGTGAATGCATTATGTGGTT+TGG | 0.466194 | 5_4:+59825614 | Msa0860780:CDS |
| AACCCTTAGCACTCGGGTTG+AGG | 0.472447 | 5_4:-59825151 | None:intergenic |
| ACCCGAGTGCTAAGGGTTAG+TGG | 0.476217 | 5_4:+59825156 | Msa0860780:CDS |
| ATTTAAGAAGGATCAATTGA+GGG | 0.509297 | 5_4:+59825119 | Msa0860780:CDS |
| GTGTCTCAAAGGAAGGGAAA+AGG | 0.515459 | 5_4:+59825477 | Msa0860780:CDS |
| GGAATTGTTGCTGGTTGTTG+AGG | 0.516048 | 5_4:-59825372 | None:intergenic |
| TGAAGAAGTGTCTCAAAGGA+AGG | 0.517294 | 5_4:+59825470 | Msa0860780:CDS |
| GATTTAAGAAGGATCAATTG+AGG | 0.522381 | 5_4:+59825118 | Msa0860780:CDS |
| GAAACTTGAGGAGCAGCGAT+TGG | 0.522486 | 5_4:-59825402 | None:intergenic |
| TGTTATCATGTCAATAAGTA+CGG | 0.530507 | 5_4:+59825793 | Msa0860780:three_prime_UTR |
| TAACCTCAACCCGAGTGCTA+AGG | 0.532321 | 5_4:+59825148 | Msa0860780:CDS |
| GCCACTAACCCTTAGCACTC+GGG | 0.540526 | 5_4:-59825157 | None:intergenic |
| AACCTCAACCCGAGTGCTAA+GGG | 0.546287 | 5_4:+59825149 | Msa0860780:CDS |
| ATTGGTGCCAAATTTGAAGC+TGG | 0.546360 | 5_4:+59825258 | Msa0860780:CDS |
| CATTCTGATACAAGTAGCAT+TGG | 0.563375 | 5_4:+59825240 | Msa0860780:CDS |
| AGTTAAGAAGCAAAAGAAGC+TGG | 0.568685 | 5_4:+59825644 | Msa0860780:CDS |
| AATACATACAGGATTTAAGA+AGG | 0.571351 | 5_4:+59825107 | Msa0860780:intron |
| GAATATGTGAATGCATTATG+TGG | 0.588342 | 5_4:+59825609 | Msa0860780:CDS |
| ATGCTACTTGTATCAGAATG+AGG | 0.593307 | 5_4:-59825237 | None:intergenic |
| ACCCTCTGATTGGGATCATG+AGG | 0.597309 | 5_4:+59824745 | Msa0860780:CDS |
| GAAGAAGTGTCTCAAAGGAA+GGG | 0.599036 | 5_4:+59825471 | Msa0860780:CDS |
| TCCTCATGATCCCAATCAGA+GGG | 0.605437 | 5_4:-59824746 | None:intergenic |
| GGAGCAGCGATTGGTTTCTG+AGG | 0.611313 | 5_4:-59825393 | None:intergenic |
| AAATTGAAGAAGTGTCTCAA+AGG | 0.624611 | 5_4:+59825466 | Msa0860780:CDS |
| GAAGGGAAAAGGTAAAGCTG+AGG | 0.645097 | 5_4:+59825488 | Msa0860780:CDS |
| ATCCTCATGATCCCAATCAG+AGG | 0.646596 | 5_4:-59824747 | None:intergenic |
| TCATGATCCCAATCAGAGGG+TGG | 0.690466 | 5_4:-59824743 | None:intergenic |
| CTACTTGTATCAGAATGAGG+TGG | 0.691616 | 5_4:-59825234 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AACTATATATTATATGAAAA+AGG | - | chr5_4:59824830-59824849 | None:intergenic | 10.0% |
| !!! | TTTTTTATCAAATTTTCTTT+TGG | + | chr5_4:59825012-59825031 | Msa0860780:intron | 10.0% |
| !! | AACTATATATTATATGAAAA+AGG | - | chr5_4:59824830-59824849 | None:intergenic | 10.0% |
| !!! | TTTTTTATCAAATTTTCTTT+TGG | + | chr5_4:59825012-59825031 | Msa0860780:intron | 10.0% |
| !!! | GTAATTAATTCATTTTTTTC+AGG | + | chr5_4:59825723-59825742 | Msa0860780:CDS | 15.0% |
| !!! | GTAATTAATTCATTTTTTTC+AGG | + | chr5_4:59825723-59825742 | Msa0860780:CDS | 15.0% |
| !! | GACAAATTAATGAGAAAAAA+TGG | + | chr5_4:59825184-59825203 | Msa0860780:CDS | 20.0% |
| !!! | ATTAATTCATTTTTTTCAGG+AGG | + | chr5_4:59825726-59825745 | Msa0860780:CDS | 20.0% |
| !! | AATTAATCAATTACAACTCT+TGG | - | chr5_4:59825761-59825780 | None:intergenic | 20.0% |
| !! | AAGAGAATAAAGAATGTTTA+AGG | + | chr5_4:59825864-59825883 | Msa0860780:three_prime_UTR | 20.0% |
| !! | GACAAATTAATGAGAAAAAA+TGG | + | chr5_4:59825184-59825203 | Msa0860780:CDS | 20.0% |
| !!! | ATTAATTCATTTTTTTCAGG+AGG | + | chr5_4:59825726-59825745 | Msa0860780:CDS | 20.0% |
| !! | AATTAATCAATTACAACTCT+TGG | - | chr5_4:59825761-59825780 | None:intergenic | 20.0% |
| !! | AAGAGAATAAAGAATGTTTA+AGG | + | chr5_4:59825864-59825883 | Msa0860780:three_prime_UTR | 20.0% |
| !! | AAAGACATTTTCTGCTTAAT+TGG | - | chr5_4:59824677-59824696 | None:intergenic | 25.0% |
| ! | TCAAATAACACAACTATGAT+CGG | + | chr5_4:59825083-59825102 | Msa0860780:intron | 25.0% |
| ! | AATACATACAGGATTTAAGA+AGG | + | chr5_4:59825107-59825126 | Msa0860780:intron | 25.0% |
| ! | ATTTAAGAAGGATCAATTGA+GGG | + | chr5_4:59825119-59825138 | Msa0860780:CDS | 25.0% |
| ! | ACTTCTTCAATTTCTTTGTT+TGG | - | chr5_4:59825459-59825478 | None:intergenic | 25.0% |
| ! | TGTTATCATGTCAATAAGTA+CGG | + | chr5_4:59825793-59825812 | Msa0860780:three_prime_UTR | 25.0% |
| !! | AAAGACATTTTCTGCTTAAT+TGG | - | chr5_4:59824677-59824696 | None:intergenic | 25.0% |
| ! | TCAAATAACACAACTATGAT+CGG | + | chr5_4:59825083-59825102 | Msa0860780:intron | 25.0% |
| ! | AATACATACAGGATTTAAGA+AGG | + | chr5_4:59825107-59825126 | Msa0860780:intron | 25.0% |
| ! | ATTTAAGAAGGATCAATTGA+GGG | + | chr5_4:59825119-59825138 | Msa0860780:CDS | 25.0% |
| ! | ACTTCTTCAATTTCTTTGTT+TGG | - | chr5_4:59825459-59825478 | None:intergenic | 25.0% |
| ! | TGTTATCATGTCAATAAGTA+CGG | + | chr5_4:59825793-59825812 | Msa0860780:three_prime_UTR | 25.0% |
| !!! | AGCTTTTATGTTTCTAGCAA+AGG | - | chr5_4:59824645-59824664 | None:intergenic | 30.0% |
| AAGAAAGAAATGAACTAACC+TGG | - | chr5_4:59824800-59824819 | None:intergenic | 30.0% | |
| ! | TATTATATGAAAAAGGCACG+AGG | - | chr5_4:59824823-59824842 | None:intergenic | 30.0% |
| GATTTAAGAAGGATCAATTG+AGG | + | chr5_4:59825118-59825137 | Msa0860780:CDS | 30.0% | |
| TAAGATACCAGCTTCAAATT+TGG | - | chr5_4:59825268-59825287 | None:intergenic | 30.0% | |
| !!! | GATGTACTACTTGTTTTTTC+TGG | - | chr5_4:59825431-59825450 | None:intergenic | 30.0% |
| !! | AAATTGAAGAAGTGTCTCAA+AGG | + | chr5_4:59825466-59825485 | Msa0860780:CDS | 30.0% |
| ! | TGAAAAAAAGTCACTGACTA+TGG | + | chr5_4:59825563-59825582 | Msa0860780:CDS | 30.0% |
| GAATATGTGAATGCATTATG+TGG | + | chr5_4:59825609-59825628 | Msa0860780:CDS | 30.0% | |
| !! | AAAGAAGCTGGTTAATTTGT+TGG | + | chr5_4:59825656-59825675 | Msa0860780:CDS | 30.0% |
| !!! | AGCTTTTATGTTTCTAGCAA+AGG | - | chr5_4:59824645-59824664 | None:intergenic | 30.0% |
| AAGAAAGAAATGAACTAACC+TGG | - | chr5_4:59824800-59824819 | None:intergenic | 30.0% | |
| ! | TATTATATGAAAAAGGCACG+AGG | - | chr5_4:59824823-59824842 | None:intergenic | 30.0% |
| GATTTAAGAAGGATCAATTG+AGG | + | chr5_4:59825118-59825137 | Msa0860780:CDS | 30.0% | |
| TAAGATACCAGCTTCAAATT+TGG | - | chr5_4:59825268-59825287 | None:intergenic | 30.0% | |
| !!! | GATGTACTACTTGTTTTTTC+TGG | - | chr5_4:59825431-59825450 | None:intergenic | 30.0% |
| !! | AAATTGAAGAAGTGTCTCAA+AGG | + | chr5_4:59825466-59825485 | Msa0860780:CDS | 30.0% |
| ! | TGAAAAAAAGTCACTGACTA+TGG | + | chr5_4:59825563-59825582 | Msa0860780:CDS | 30.0% |
| GAATATGTGAATGCATTATG+TGG | + | chr5_4:59825609-59825628 | Msa0860780:CDS | 30.0% | |
| !! | AAAGAAGCTGGTTAATTTGT+TGG | + | chr5_4:59825656-59825675 | Msa0860780:CDS | 30.0% |
| ACACTTATTCTTATGCTTCC+AGG | + | chr5_4:59824779-59824798 | Msa0860780:CDS | 35.0% | |
| ATTATCACATTCGCTACATG+TGG | - | chr5_4:59824951-59824970 | None:intergenic | 35.0% | |
| CTATGATCGGTAATACATAC+AGG | + | chr5_4:59825096-59825115 | Msa0860780:intron | 35.0% | |
| ! | ATGCTACTTGTATCAGAATG+AGG | - | chr5_4:59825240-59825259 | None:intergenic | 35.0% |
| CATTCTGATACAAGTAGCAT+TGG | + | chr5_4:59825240-59825259 | Msa0860780:CDS | 35.0% | |
| !!! | TTTTGTTGGCTCATGAGTTT+TGG | - | chr5_4:59825303-59825322 | None:intergenic | 35.0% |
| ! | GAGTTGGAACAGTATTTTGT+TGG | - | chr5_4:59825317-59825336 | None:intergenic | 35.0% |
| !! | TTTTTCTGGTCAGAAACTTG+AGG | - | chr5_4:59825417-59825436 | None:intergenic | 35.0% |
| ! | AAAGTCACTGACTATGGAAA+TGG | + | chr5_4:59825569-59825588 | Msa0860780:CDS | 35.0% |
| TGTGAATGCATTATGTGGTT+TGG | + | chr5_4:59825614-59825633 | Msa0860780:CDS | 35.0% | |
| AGTTAAGAAGCAAAAGAAGC+TGG | + | chr5_4:59825644-59825663 | Msa0860780:CDS | 35.0% | |
| !! | TTTGTTGGTGCTTGTGTTTT+TGG | + | chr5_4:59825671-59825690 | Msa0860780:CDS | 35.0% |
| ACACTTATTCTTATGCTTCC+AGG | + | chr5_4:59824779-59824798 | Msa0860780:CDS | 35.0% | |
| ATTATCACATTCGCTACATG+TGG | - | chr5_4:59824951-59824970 | None:intergenic | 35.0% | |
| CTATGATCGGTAATACATAC+AGG | + | chr5_4:59825096-59825115 | Msa0860780:intron | 35.0% | |
| ! | ATGCTACTTGTATCAGAATG+AGG | - | chr5_4:59825240-59825259 | None:intergenic | 35.0% |
| CATTCTGATACAAGTAGCAT+TGG | + | chr5_4:59825240-59825259 | Msa0860780:CDS | 35.0% | |
| !!! | TTTTGTTGGCTCATGAGTTT+TGG | - | chr5_4:59825303-59825322 | None:intergenic | 35.0% |
| ! | GAGTTGGAACAGTATTTTGT+TGG | - | chr5_4:59825317-59825336 | None:intergenic | 35.0% |
| !! | TTTTTCTGGTCAGAAACTTG+AGG | - | chr5_4:59825417-59825436 | None:intergenic | 35.0% |
| ! | AAAGTCACTGACTATGGAAA+TGG | + | chr5_4:59825569-59825588 | Msa0860780:CDS | 35.0% |
| TGTGAATGCATTATGTGGTT+TGG | + | chr5_4:59825614-59825633 | Msa0860780:CDS | 35.0% | |
| AGTTAAGAAGCAAAAGAAGC+TGG | + | chr5_4:59825644-59825663 | Msa0860780:CDS | 35.0% | |
| !! | TTTGTTGGTGCTTGTGTTTT+TGG | + | chr5_4:59825671-59825690 | Msa0860780:CDS | 35.0% |
| AATTTGAACCACCCTCTGAT+TGG | + | chr5_4:59824735-59824754 | Msa0860780:CDS | 40.0% | |
| ATTTGAACCACCCTCTGATT+GGG | + | chr5_4:59824736-59824755 | Msa0860780:CDS | 40.0% | |
| CTACTTGTATCAGAATGAGG+TGG | - | chr5_4:59825237-59825256 | None:intergenic | 40.0% | |
| !! | ATTGGTGCCAAATTTGAAGC+TGG | + | chr5_4:59825258-59825277 | Msa0860780:CDS | 40.0% |
| ! | TTCTTGGTGTGTTGTTGGTT+TGG | - | chr5_4:59825343-59825362 | None:intergenic | 40.0% |
| !! | TGAAGAAGTGTCTCAAAGGA+AGG | + | chr5_4:59825470-59825489 | Msa0860780:CDS | 40.0% |
| !! | GAAGAAGTGTCTCAAAGGAA+GGG | + | chr5_4:59825471-59825490 | Msa0860780:CDS | 40.0% |
| !!! | GTGTTTTTGGTCTTGCTGTT+TGG | + | chr5_4:59825684-59825703 | Msa0860780:CDS | 40.0% |
| AATTTGAACCACCCTCTGAT+TGG | + | chr5_4:59824735-59824754 | Msa0860780:CDS | 40.0% | |
| ATTTGAACCACCCTCTGATT+GGG | + | chr5_4:59824736-59824755 | Msa0860780:CDS | 40.0% | |
| CTACTTGTATCAGAATGAGG+TGG | - | chr5_4:59825237-59825256 | None:intergenic | 40.0% | |
| !! | ATTGGTGCCAAATTTGAAGC+TGG | + | chr5_4:59825258-59825277 | Msa0860780:CDS | 40.0% |
| ! | TTCTTGGTGTGTTGTTGGTT+TGG | - | chr5_4:59825343-59825362 | None:intergenic | 40.0% |
| !! | TGAAGAAGTGTCTCAAAGGA+AGG | + | chr5_4:59825470-59825489 | Msa0860780:CDS | 40.0% |
| !! | GAAGAAGTGTCTCAAAGGAA+GGG | + | chr5_4:59825471-59825490 | Msa0860780:CDS | 40.0% |
| !!! | GTGTTTTTGGTCTTGCTGTT+TGG | + | chr5_4:59825684-59825703 | Msa0860780:CDS | 40.0% |
| TCCTCATGATCCCAATCAGA+GGG | - | chr5_4:59824749-59824768 | None:intergenic | 45.0% | |
| ATCCTCATGATCCCAATCAG+AGG | - | chr5_4:59824750-59824769 | None:intergenic | 45.0% | |
| !! | GTTGTTGGTTTGGTTGGAGT+TGG | - | chr5_4:59825333-59825352 | None:intergenic | 45.0% |
| !! | TGGTGTGTTGTTGGTTTGGT+TGG | - | chr5_4:59825339-59825358 | None:intergenic | 45.0% |
| ! | TGAGGTTCTTGGTGTGTTGT+TGG | - | chr5_4:59825348-59825367 | None:intergenic | 45.0% |
| !!! | GTTGAGGCTTTTGAGGTTCT+TGG | - | chr5_4:59825359-59825378 | None:intergenic | 45.0% |
| ! | GGAATTGTTGCTGGTTGTTG+AGG | - | chr5_4:59825375-59825394 | None:intergenic | 45.0% |
| ! | GGTTTCTGAGGAATTGTTGC+TGG | - | chr5_4:59825384-59825403 | None:intergenic | 45.0% |
| GTGTCTCAAAGGAAGGGAAA+AGG | + | chr5_4:59825477-59825496 | Msa0860780:CDS | 45.0% | |
| GAAGGGAAAAGGTAAAGCTG+AGG | + | chr5_4:59825488-59825507 | Msa0860780:CDS | 45.0% | |
| TCCTCATGATCCCAATCAGA+GGG | - | chr5_4:59824749-59824768 | None:intergenic | 45.0% | |
| ATCCTCATGATCCCAATCAG+AGG | - | chr5_4:59824750-59824769 | None:intergenic | 45.0% | |
| !! | GTTGTTGGTTTGGTTGGAGT+TGG | - | chr5_4:59825333-59825352 | None:intergenic | 45.0% |
| !! | TGGTGTGTTGTTGGTTTGGT+TGG | - | chr5_4:59825339-59825358 | None:intergenic | 45.0% |
| ! | TGAGGTTCTTGGTGTGTTGT+TGG | - | chr5_4:59825348-59825367 | None:intergenic | 45.0% |
| !!! | GTTGAGGCTTTTGAGGTTCT+TGG | - | chr5_4:59825359-59825378 | None:intergenic | 45.0% |
| ! | GGAATTGTTGCTGGTTGTTG+AGG | - | chr5_4:59825375-59825394 | None:intergenic | 45.0% |
| ! | GGTTTCTGAGGAATTGTTGC+TGG | - | chr5_4:59825384-59825403 | None:intergenic | 45.0% |
| GTGTCTCAAAGGAAGGGAAA+AGG | + | chr5_4:59825477-59825496 | Msa0860780:CDS | 45.0% | |
| GAAGGGAAAAGGTAAAGCTG+AGG | + | chr5_4:59825488-59825507 | Msa0860780:CDS | 45.0% | |
| TCATGATCCCAATCAGAGGG+TGG | - | chr5_4:59824746-59824765 | None:intergenic | 50.0% | |
| ACCCTCTGATTGGGATCATG+AGG | + | chr5_4:59824745-59824764 | Msa0860780:CDS | 50.0% | |
| TAACCTCAACCCGAGTGCTA+AGG | + | chr5_4:59825148-59825167 | Msa0860780:CDS | 50.0% | |
| AACCTCAACCCGAGTGCTAA+GGG | + | chr5_4:59825149-59825168 | Msa0860780:CDS | 50.0% | |
| ! | GCTGGTTGTTGAGGCTTTTG+AGG | - | chr5_4:59825366-59825385 | None:intergenic | 50.0% |
| GAAACTTGAGGAGCAGCGAT+TGG | - | chr5_4:59825405-59825424 | None:intergenic | 50.0% | |
| TCATGATCCCAATCAGAGGG+TGG | - | chr5_4:59824746-59824765 | None:intergenic | 50.0% | |
| ACCCTCTGATTGGGATCATG+AGG | + | chr5_4:59824745-59824764 | Msa0860780:CDS | 50.0% | |
| TAACCTCAACCCGAGTGCTA+AGG | + | chr5_4:59825148-59825167 | Msa0860780:CDS | 50.0% | |
| AACCTCAACCCGAGTGCTAA+GGG | + | chr5_4:59825149-59825168 | Msa0860780:CDS | 50.0% | |
| ! | GCTGGTTGTTGAGGCTTTTG+AGG | - | chr5_4:59825366-59825385 | None:intergenic | 50.0% |
| GAAACTTGAGGAGCAGCGAT+TGG | - | chr5_4:59825405-59825424 | None:intergenic | 50.0% | |
| ! | AACCCTTAGCACTCGGGTTG+AGG | - | chr5_4:59825154-59825173 | None:intergenic | 55.0% |
| ACCCGAGTGCTAAGGGTTAG+TGG | + | chr5_4:59825156-59825175 | Msa0860780:CDS | 55.0% | |
| GCCACTAACCCTTAGCACTC+GGG | - | chr5_4:59825160-59825179 | None:intergenic | 55.0% | |
| CGCCACTAACCCTTAGCACT+CGG | - | chr5_4:59825161-59825180 | None:intergenic | 55.0% | |
| !! | GGAGCAGCGATTGGTTTCTG+AGG | - | chr5_4:59825396-59825415 | None:intergenic | 55.0% |
| ! | AACCCTTAGCACTCGGGTTG+AGG | - | chr5_4:59825154-59825173 | None:intergenic | 55.0% |
| ACCCGAGTGCTAAGGGTTAG+TGG | + | chr5_4:59825156-59825175 | Msa0860780:CDS | 55.0% | |
| GCCACTAACCCTTAGCACTC+GGG | - | chr5_4:59825160-59825179 | None:intergenic | 55.0% | |
| CGCCACTAACCCTTAGCACT+CGG | - | chr5_4:59825161-59825180 | None:intergenic | 55.0% | |
| !! | GGAGCAGCGATTGGTTTCTG+AGG | - | chr5_4:59825396-59825415 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_4 | gene | 59824616 | 59825949 | 59824616 | ID=Msa0860780;Name=Msa0860780 |
| chr5_4 | mRNA | 59824616 | 59825949 | 59824616 | ID=Msa0860780-mRNA-1;Parent=Msa0860780;Name=Msa0860780-mRNA-1;_AED=0.00;_eAED=0.00;_QI=73|1|1|1|1|1|2|179|254 |
| chr5_4 | exon | 59824616 | 59824800 | 59824616 | ID=Msa0860780-mRNA-1:exon:18387;Parent=Msa0860780-mRNA-1 |
| chr5_4 | exon | 59825118 | 59825949 | 59825118 | ID=Msa0860780-mRNA-1:exon:18388;Parent=Msa0860780-mRNA-1 |
| chr5_4 | five_prime_UTR | 59824616 | 59824688 | 59824616 | ID=Msa0860780-mRNA-1:five_prime_utr;Parent=Msa0860780-mRNA-1 |
| chr5_4 | CDS | 59824689 | 59824800 | 59824689 | ID=Msa0860780-mRNA-1:cds;Parent=Msa0860780-mRNA-1 |
| chr5_4 | CDS | 59825118 | 59825770 | 59825118 | ID=Msa0860780-mRNA-1:cds;Parent=Msa0860780-mRNA-1 |
| chr5_4 | three_prime_UTR | 59825771 | 59825949 | 59825771 | ID=Msa0860780-mRNA-1:three_prime_utr;Parent=Msa0860780-mRNA-1 |
| Gene Sequence |
| Protein sequence |
