Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1284120 | sp|D9UC01|RTM2D_ARATH | 37.113 | 97 | 61 | 0 | 24 | 120 | 16 | 112 | 3.05e-16 | 83.2 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1284120 | A0A072TR16 | 86.758 | 438 | 29 | 3 | 1 | 436 | 1 | 411 | 0.0 | 715 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0015150 | Msa1284120 | 0.823347 | 1.454765e-53 | -8.615850e-47 |
| Msa0071850 | Msa1284120 | 0.811846 | 5.707165e-51 | -8.615850e-47 |
| Msa0071860 | Msa1284120 | 0.819473 | 1.139963e-52 | -8.615850e-47 |
| Msa0071880 | Msa1284120 | 0.817466 | 3.249497e-52 | -8.615850e-47 |
| Msa0108880 | Msa1284120 | 0.818830 | 1.596830e-52 | -8.615850e-47 |
| Msa0616510 | Msa1284120 | 0.827076 | 1.910583e-54 | -8.615850e-47 |
| Msa0699840 | Msa1284120 | 0.839586 | 1.450319e-57 | -8.615850e-47 |
| Msa0734260 | Msa1284120 | 0.827914 | 1.202574e-54 | -8.615850e-47 |
| Msa0742650 | Msa1284120 | 0.824444 | 8.046807e-54 | -8.615850e-47 |
| Msa0782750 | Msa1284120 | 0.815852 | 7.475591e-52 | -8.615850e-47 |
| Msa0783530 | Msa1284120 | 0.839241 | 1.782361e-57 | -8.615850e-47 |
| Msa0829300 | Msa1284120 | 0.814182 | 1.755220e-51 | -8.615850e-47 |
| Msa0829330 | Msa1284120 | 0.805624 | 1.220026e-49 | -8.615850e-47 |
| Msa0125210 | Msa1284120 | 0.813441 | 2.555917e-51 | -8.615850e-47 |
| Msa0137210 | Msa1284120 | 0.821370 | 4.185753e-53 | -8.615850e-47 |
| Msa0164400 | Msa1284120 | 0.801258 | 9.799331e-49 | -8.615850e-47 |
| Msa0174450 | Msa1284120 | 0.806294 | 8.819504e-50 | -8.615850e-47 |
| Msa0194820 | Msa1284120 | 0.806307 | 8.766205e-50 | -8.615850e-47 |
| Msa0194840 | Msa1284120 | 0.808804 | 2.587039e-50 | -8.615850e-47 |
| Msa1242370 | Msa1284120 | 0.893828 | 4.367454e-75 | -8.615850e-47 |
| Msa1262860 | Msa1284120 | 0.804509 | 2.087747e-49 | -8.615850e-47 |
| Msa1284120 | Msa1341890 | 0.833717 | 4.541911e-56 | -8.615850e-47 |
| Msa1284120 | Msa1415540 | 0.811150 | 8.083781e-51 | -8.615850e-47 |
| Msa0367830 | Msa1284120 | 0.815756 | 7.855336e-52 | -8.615850e-47 |
| Msa0388770 | Msa1284120 | 0.812491 | 4.128051e-51 | -8.615850e-47 |
| Msa0415610 | Msa1284120 | 0.843255 | 1.568285e-58 | -8.615850e-47 |
| Msa0418970 | Msa1284120 | 0.813622 | 2.331679e-51 | -8.615850e-47 |
| Msa0460630 | Msa1284120 | 0.840764 | 7.141919e-58 | -8.615850e-47 |
| Msa0465400 | Msa1284120 | 0.816778 | 4.639842e-52 | -8.615850e-47 |
| Msa0471460 | Msa1284120 | 0.811815 | 5.796152e-51 | -8.615850e-47 |
| Msa1014320 | Msa1284120 | 0.800439 | 1.440501e-48 | -8.615850e-47 |
| Msa1020630 | Msa1284120 | 0.814864 | 1.239877e-51 | -8.615850e-47 |
| Msa1113800 | Msa1284120 | 0.824140 | 9.482848e-54 | -8.615850e-47 |
| Msa1160500 | Msa1284120 | 0.841469 | 4.662029e-58 | -8.615850e-47 |
| Msa1184330 | Msa1284120 | 0.800277 | 1.553919e-48 | -8.615850e-47 |
| Msa0528570 | Msa1284120 | 0.807371 | 5.222133e-50 | -8.615850e-47 |
| Msa0562620 | Msa1284120 | 0.804484 | 2.113151e-49 | -8.615850e-47 |
| Msa0853600 | Msa1284120 | 0.805272 | 1.446161e-49 | -8.615850e-47 |
| Msa0860780 | Msa1284120 | 0.809075 | 2.263391e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1284120 | MtrunA17_Chr8g0356011 | 86.758 | 438 | 29 | 3 | 1 | 436 | 1 | 411 | 0.0 | 715 |
| Msa1284120 | MtrunA17_Chr3g0078561 | 33.895 | 475 | 202 | 20 | 1 | 436 | 1 | 402 | 3.23e-47 | 167 |
| Msa1284120 | MtrunA17_Chr5g0440291 | 35.417 | 96 | 61 | 1 | 22 | 117 | 12 | 106 | 3.46e-13 | 69.3 |
| Msa1284120 | MtrunA17_Chr5g0440321 | 30.682 | 176 | 113 | 5 | 15 | 189 | 4 | 171 | 9.48e-13 | 68.6 |
| Msa1284120 | MtrunA17_Chr5g0440311 | 33.333 | 117 | 71 | 2 | 15 | 125 | 4 | 119 | 5.35e-11 | 63.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1284120 | AT5G04890.1 | 37.113 | 97 | 61 | 0 | 24 | 120 | 16 | 112 | 4.66e-17 | 82.8 |
| Msa1284120 | AT2G27140.1 | 38.889 | 90 | 54 | 1 | 22 | 111 | 12 | 100 | 1.21e-16 | 79.3 |
| Msa1284120 | AT5G20970.1 | 36.458 | 96 | 60 | 1 | 16 | 111 | 2 | 96 | 1.63e-13 | 70.5 |
Find 68 sgRNAs with CRISPR-Local
Find 212 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTCTTCATGTTTATCTTCC+TGG | 0.169791 | 8_3:+26158142 | Msa1284120:CDS |
| GAGAGTTCCTTGTTCAAATT+TGG | 0.170610 | 8_3:-26158548 | None:intergenic |
| TATTTACTCTAAAGTTATTA+TGG | 0.210860 | 8_3:+26158003 | Msa1284120:exon |
| CATTTAGAGCACCAACTTTC+CGG | 0.225720 | 8_3:+26158044 | Msa1284120:CDS |
| TCCATTCTTCCCTTCTTGAT+TGG | 0.243777 | 8_3:-26159388 | None:intergenic |
| GCATTTGTATAACTACAATT+TGG | 0.268441 | 8_3:+26157963 | Msa1284120:five_prime_UTR |
| CCATTCTTCCCTTCTTGATT+GGG | 0.284831 | 8_3:-26159387 | None:intergenic |
| TCATTGCTAATTGTTTCTTT+AGG | 0.292280 | 8_3:-26158817 | None:intergenic |
| TCAAAATGGTAAAGAGGATT+TGG | 0.306061 | 8_3:+26159050 | Msa1284120:CDS |
| TCACGAAAGTTGAGGGTTAC+AGG | 0.325893 | 8_3:+26158439 | Msa1284120:CDS |
| GTGTCTATGGATGTTGGTTT+TGG | 0.330660 | 8_3:-26158874 | None:intergenic |
| CATTATAGTTCTCCCTTAAG+AGG | 0.334811 | 8_3:-26159559 | None:intergenic |
| GTTCTAGTGATTGCTGCATT+TGG | 0.340403 | 8_3:+26159513 | Msa1284120:CDS |
| CTCCATTTGTTAACTGGAAT+CGG | 0.348473 | 8_3:-26158469 | None:intergenic |
| TCTAAATCTTTATTATTTGA+AGG | 0.357574 | 8_3:-26158643 | None:intergenic |
| AACAAATGAAAAGGCTCAAA+AGG | 0.366924 | 8_3:+26159110 | Msa1284120:CDS |
| TTGGAGCCTATGTGTCATAT+TGG | 0.385338 | 8_3:+26159532 | Msa1284120:CDS |
| TGATTCTTGCTTGACTCATA+AGG | 0.387472 | 8_3:-26159276 | None:intergenic |
| GGTTACCAAAGAAAATTTAG+AGG | 0.391549 | 8_3:+26159170 | Msa1284120:CDS |
| TCAAATGAAGATTGAGTTGC+TGG | 0.398349 | 8_3:+26158411 | Msa1284120:CDS |
| ATAGATGAAAAGCCTCAAAA+TGG | 0.404493 | 8_3:+26159036 | Msa1284120:CDS |
| AATTTAGAGGAAAAGATAGT+AGG | 0.419722 | 8_3:+26159183 | Msa1284120:CDS |
| AATAGATGAAAAGCCTCAAA+AGG | 0.421979 | 8_3:+26158909 | Msa1284120:CDS |
| AATTTGCTGCTACTTCTTCT+CGG | 0.423071 | 8_3:+26159418 | Msa1284120:CDS |
| ACATGAAGAAGGTAAGCTTC+AGG | 0.423364 | 8_3:-26158130 | None:intergenic |
| TTTCTGGAACAGGATATGTT+TGG | 0.435725 | 8_3:-26158501 | None:intergenic |
| ACTTGTGATGATTGTGAAGT+TGG | 0.436730 | 8_3:-26158592 | None:intergenic |
| GTTTCTTTCATCTCTGATAG+AGG | 0.440166 | 8_3:-26158106 | None:intergenic |
| CAATGACAATAACCCTCAAA+AGG | 0.440997 | 8_3:+26158834 | Msa1284120:CDS |
| TTGGTTCTCTCTATGGATGT+TGG | 0.448014 | 8_3:-26159006 | None:intergenic |
| GACCGATTCCAGTTAACAAA+TGG | 0.451924 | 8_3:+26158467 | Msa1284120:CDS |
| CCCAATCAAGAAGGGAAGAA+TGG | 0.459931 | 8_3:+26159387 | Msa1284120:CDS |
| TTGGTTCTCTCTGTGGATGT+TGG | 0.461455 | 8_3:-26159081 | None:intergenic |
| CTGAAGATGCTGAGAAAGAA+AGG | 0.464414 | 8_3:+26159214 | Msa1284120:CDS |
| TTCTTCCCTTCTTGATTGGG+AGG | 0.466684 | 8_3:-26159384 | None:intergenic |
| ATAGATGAAAAGCCGCAAAA+TGG | 0.474454 | 8_3:+26158964 | Msa1284120:CDS |
| TTGGTTGTGTCTATGGATGT+TGG | 0.475530 | 8_3:-26158880 | None:intergenic |
| ACTTTGCATTTGCAATGTAA+AGG | 0.484084 | 8_3:-26159632 | None:intergenic |
| TGCTCCAAATGTTCCAGAGA+AGG | 0.484905 | 8_3:+26159338 | Msa1284120:CDS |
| CAAAACACAAACAAATGAAA+AGG | 0.491199 | 8_3:+26159101 | Msa1284120:CDS |
| GCCGCAAAATGGTCAAGTAT+TGG | 0.497366 | 8_3:+26158975 | Msa1284120:CDS |
| TTGATGTGCAAGTGTGAGAA+AGG | 0.514686 | 8_3:-26159599 | None:intergenic |
| TCAATGCTTTGAGAAGTTTG+AGG | 0.520952 | 8_3:-26158754 | None:intergenic |
| AAATGTTCCAGAGAAGGAAA+AGG | 0.521289 | 8_3:+26159344 | Msa1284120:CDS |
| GAAAGTTGCGACCGGAAAGT+TGG | 0.529825 | 8_3:-26158055 | None:intergenic |
| CAGGAAGATAAACATGAAGA+AGG | 0.535239 | 8_3:-26158141 | None:intergenic |
| AATGACAATAACCCTCAAAA+GGG | 0.540210 | 8_3:+26158835 | Msa1284120:CDS |
| GAAAGAAAGGAACTCAAAGA+AGG | 0.547668 | 8_3:+26159227 | Msa1284120:CDS |
| ACAAATGAAAAGGCTCAAAA+GGG | 0.550919 | 8_3:+26159111 | Msa1284120:CDS |
| AAAGCCTCAAAATGGTAAAG+AGG | 0.553368 | 8_3:+26159044 | Msa1284120:CDS |
| GGACATGTCACGAAAGTTGA+GGG | 0.556517 | 8_3:+26158432 | Msa1284120:CDS |
| TAAAGATTTAGATGAAGCAA+AGG | 0.558689 | 8_3:+26158654 | Msa1284120:CDS |
| AGAATTCCTCCCAATCAAGA+AGG | 0.561804 | 8_3:+26159378 | Msa1284120:CDS |
| AGACATTTAGCTGAAAATGT+AGG | 0.570668 | 8_3:+26159483 | Msa1284120:CDS |
| GGAAAACCAATATGACACAT+AGG | 0.573601 | 8_3:-26159538 | None:intergenic |
| CTTGAAGCCAAATTTGAACA+AGG | 0.579441 | 8_3:+26158541 | Msa1284120:CDS |
| TGGACATGTCACGAAAGTTG+AGG | 0.582103 | 8_3:+26158431 | Msa1284120:CDS |
| AGAAAGGAACTCAAAGAAGG+AGG | 0.597966 | 8_3:+26159230 | Msa1284120:CDS |
| ATAGATGAAAAGCCTCAAAA+GGG | 0.602281 | 8_3:+26158910 | Msa1284120:CDS |
| TGTATAACTACAATTTGGTG+AGG | 0.602841 | 8_3:+26157968 | Msa1284120:five_prime_UTR |
| GACGAACTGAAAGTTGCGAC+CGG | 0.608677 | 8_3:-26158063 | None:intergenic |
| GTTTCTTTAGGAATTTGAGA+TGG | 0.609368 | 8_3:-26158805 | None:intergenic |
| GAATTCCTCCCAATCAAGAA+GGG | 0.614961 | 8_3:+26159379 | Msa1284120:CDS |
| TTTGTGACAAGAATTGCAGA+AGG | 0.621365 | 8_3:+26159441 | Msa1284120:CDS |
| AAAGGCTCAAAAGGGTGAAG+AGG | 0.622355 | 8_3:+26159119 | Msa1284120:CDS |
| TTGTGACAAGAATTGCAGAA+GGG | 0.648697 | 8_3:+26159442 | Msa1284120:CDS |
| TCCTGTTCCAGAAAATAGTG+TGG | 0.670105 | 8_3:+26158510 | Msa1284120:CDS |
| ATTGCAGAAGGGAAATTGAG+TGG | 0.672004 | 8_3:+26159453 | Msa1284120:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TATTTACTCTAAAGTTATTA+TGG | + | chr8_3:26158003-26158022 | Msa1284120:exon | 15.0% |
| !! | TCTAAATCTTTATTATTTGA+AGG | - | chr8_3:26158646-26158665 | None:intergenic | 15.0% |
| !!! | TATTTACTCTAAAGTTATTA+TGG | + | chr8_3:26158003-26158022 | Msa1284120:exon | 15.0% |
| !! | TCTAAATCTTTATTATTTGA+AGG | - | chr8_3:26158646-26158665 | None:intergenic | 15.0% |
| !! | TATCATATGAATTGTACTTA+CGG | - | chr8_3:26158203-26158222 | None:intergenic | 20.0% |
| !!! | TCAAAACAGAAATATAGTTT+TGG | - | chr8_3:26158370-26158389 | None:intergenic | 20.0% |
| !!! | TATTTCTGTTTTGATTTTGT+AGG | + | chr8_3:26158376-26158395 | Msa1284120:intron | 20.0% |
| !! | TATCATATGAATTGTACTTA+CGG | - | chr8_3:26158203-26158222 | None:intergenic | 20.0% |
| !!! | TCAAAACAGAAATATAGTTT+TGG | - | chr8_3:26158370-26158389 | None:intergenic | 20.0% |
| !!! | TATTTCTGTTTTGATTTTGT+AGG | + | chr8_3:26158376-26158395 | Msa1284120:intron | 20.0% |
| ! | GCATTTGTATAACTACAATT+TGG | + | chr8_3:26157963-26157982 | Msa1284120:five_prime_UTR | 25.0% |
| ! | AAAGTCAAAATTTGTGTGTA+TGG | + | chr8_3:26158327-26158346 | Msa1284120:intron | 25.0% |
| !!! | TTTTGGTTTGATTATATAGC+AGG | - | chr8_3:26158353-26158372 | None:intergenic | 25.0% |
| !! | TGATTTTGTAGGTTTTACAA+AGG | + | chr8_3:26158387-26158406 | Msa1284120:intron | 25.0% |
| !!! | AATTTTCTCCATTTGTTAAC+TGG | - | chr8_3:26158478-26158497 | None:intergenic | 25.0% |
| ! | TAAAGATTTAGATGAAGCAA+AGG | + | chr8_3:26158654-26158673 | Msa1284120:CDS | 25.0% |
| !! | TCATTGCTAATTGTTTCTTT+AGG | - | chr8_3:26158820-26158839 | None:intergenic | 25.0% |
| !!! | CTTTTCATCTATTTGCTTTT+TGG | - | chr8_3:26158902-26158921 | None:intergenic | 25.0% |
| !! | CTTTTCATCTATTTGTGTTT+TGG | - | chr8_3:26159028-26159047 | None:intergenic | 25.0% |
| !! | CTTTTCATTTGTTTGTGTTT+TGG | - | chr8_3:26159103-26159122 | None:intergenic | 25.0% |
| ! | CAAAACACAAACAAATGAAA+AGG | + | chr8_3:26159101-26159120 | Msa1284120:CDS | 25.0% |
| !! | ACCAATTTCTCTATTGTTTT+TGG | - | chr8_3:26159153-26159172 | None:intergenic | 25.0% |
| !! | CTTTTCCTCTAAATTTTCTT+TGG | - | chr8_3:26159178-26159197 | None:intergenic | 25.0% |
| ! | AATTTAGAGGAAAAGATAGT+AGG | + | chr8_3:26159183-26159202 | Msa1284120:CDS | 25.0% |
| ! | GCATTTGTATAACTACAATT+TGG | + | chr8_3:26157963-26157982 | Msa1284120:five_prime_UTR | 25.0% |
| ! | AAAGTCAAAATTTGTGTGTA+TGG | + | chr8_3:26158327-26158346 | Msa1284120:intron | 25.0% |
| !!! | TTTTGGTTTGATTATATAGC+AGG | - | chr8_3:26158353-26158372 | None:intergenic | 25.0% |
| !! | TGATTTTGTAGGTTTTACAA+AGG | + | chr8_3:26158387-26158406 | Msa1284120:intron | 25.0% |
| !!! | AATTTTCTCCATTTGTTAAC+TGG | - | chr8_3:26158478-26158497 | None:intergenic | 25.0% |
| ! | TAAAGATTTAGATGAAGCAA+AGG | + | chr8_3:26158654-26158673 | Msa1284120:CDS | 25.0% |
| !! | TCATTGCTAATTGTTTCTTT+AGG | - | chr8_3:26158820-26158839 | None:intergenic | 25.0% |
| !!! | CTTTTCATCTATTTGCTTTT+TGG | - | chr8_3:26158902-26158921 | None:intergenic | 25.0% |
| !! | CTTTTCATCTATTTGTGTTT+TGG | - | chr8_3:26159028-26159047 | None:intergenic | 25.0% |
| !! | CTTTTCATTTGTTTGTGTTT+TGG | - | chr8_3:26159103-26159122 | None:intergenic | 25.0% |
| ! | CAAAACACAAACAAATGAAA+AGG | + | chr8_3:26159101-26159120 | Msa1284120:CDS | 25.0% |
| !! | ACCAATTTCTCTATTGTTTT+TGG | - | chr8_3:26159153-26159172 | None:intergenic | 25.0% |
| !! | CTTTTCCTCTAAATTTTCTT+TGG | - | chr8_3:26159178-26159197 | None:intergenic | 25.0% |
| ! | AATTTAGAGGAAAAGATAGT+AGG | + | chr8_3:26159183-26159202 | Msa1284120:CDS | 25.0% |
| ! | TGTATAACTACAATTTGGTG+AGG | + | chr8_3:26157968-26157987 | Msa1284120:five_prime_UTR | 30.0% |
| !! | ATGCCTTTAACTTGTTTACA+TGG | + | chr8_3:26158168-26158187 | Msa1284120:intron | 30.0% |
| !!! | CTTTTTTCTACTTCTTGTTG+AGG | - | chr8_3:26158622-26158641 | None:intergenic | 30.0% |
| !! | GTTGATTCTTCCAATTTTTG+TGG | - | chr8_3:26158712-26158731 | None:intergenic | 30.0% |
| ! | GTTTCTTTAGGAATTTGAGA+TGG | - | chr8_3:26158808-26158827 | None:intergenic | 30.0% |
| AATGACAATAACCCTCAAAA+GGG | + | chr8_3:26158835-26158854 | Msa1284120:CDS | 30.0% | |
| AATAGATGAAAAGCCTCAAA+AGG | + | chr8_3:26158909-26158928 | Msa1284120:CDS | 30.0% | |
| ATAGATGAAAAGCCTCAAAA+GGG | + | chr8_3:26158910-26158929 | Msa1284120:CDS | 30.0% | |
| ATAGATGAAAAGCCTCAAAA+TGG | + | chr8_3:26158910-26158929 | Msa1284120:CDS | 30.0% | |
| ! | AAATCCTCTTTACCATTTTG+AGG | - | chr8_3:26159051-26159070 | None:intergenic | 30.0% |
| TCAAAATGGTAAAGAGGATT+TGG | + | chr8_3:26159050-26159069 | Msa1284120:CDS | 30.0% | |
| AACAAATGAAAAGGCTCAAA+AGG | + | chr8_3:26159110-26159129 | Msa1284120:CDS | 30.0% | |
| ACAAATGAAAAGGCTCAAAA+GGG | + | chr8_3:26159111-26159130 | Msa1284120:CDS | 30.0% | |
| GCCAAAAACAATAGAGAAAT+TGG | + | chr8_3:26159149-26159168 | Msa1284120:CDS | 30.0% | |
| GGTTACCAAAGAAAATTTAG+AGG | + | chr8_3:26159170-26159189 | Msa1284120:CDS | 30.0% | |
| AGACATTTAGCTGAAAATGT+AGG | + | chr8_3:26159483-26159502 | Msa1284120:CDS | 30.0% | |
| !!! | TCATATTGGTTTTCCTCTTA+AGG | + | chr8_3:26159546-26159565 | Msa1284120:CDS | 30.0% |
| !!! | CATATTGGTTTTCCTCTTAA+GGG | + | chr8_3:26159547-26159566 | Msa1284120:CDS | 30.0% |
| ACTTTGCATTTGCAATGTAA+AGG | - | chr8_3:26159635-26159654 | None:intergenic | 30.0% | |
| ! | TGTATAACTACAATTTGGTG+AGG | + | chr8_3:26157968-26157987 | Msa1284120:five_prime_UTR | 30.0% |
| !! | ATGCCTTTAACTTGTTTACA+TGG | + | chr8_3:26158168-26158187 | Msa1284120:intron | 30.0% |
| !!! | CTTTTTTCTACTTCTTGTTG+AGG | - | chr8_3:26158622-26158641 | None:intergenic | 30.0% |
| !! | GTTGATTCTTCCAATTTTTG+TGG | - | chr8_3:26158712-26158731 | None:intergenic | 30.0% |
| ! | GTTTCTTTAGGAATTTGAGA+TGG | - | chr8_3:26158808-26158827 | None:intergenic | 30.0% |
| AATGACAATAACCCTCAAAA+GGG | + | chr8_3:26158835-26158854 | Msa1284120:CDS | 30.0% | |
| AATAGATGAAAAGCCTCAAA+AGG | + | chr8_3:26158909-26158928 | Msa1284120:CDS | 30.0% | |
| ATAGATGAAAAGCCTCAAAA+GGG | + | chr8_3:26158910-26158929 | Msa1284120:CDS | 30.0% | |
| ATAGATGAAAAGCCTCAAAA+TGG | + | chr8_3:26158910-26158929 | Msa1284120:CDS | 30.0% | |
| ! | AAATCCTCTTTACCATTTTG+AGG | - | chr8_3:26159051-26159070 | None:intergenic | 30.0% |
| TCAAAATGGTAAAGAGGATT+TGG | + | chr8_3:26159050-26159069 | Msa1284120:CDS | 30.0% | |
| AACAAATGAAAAGGCTCAAA+AGG | + | chr8_3:26159110-26159129 | Msa1284120:CDS | 30.0% | |
| ACAAATGAAAAGGCTCAAAA+GGG | + | chr8_3:26159111-26159130 | Msa1284120:CDS | 30.0% | |
| GCCAAAAACAATAGAGAAAT+TGG | + | chr8_3:26159149-26159168 | Msa1284120:CDS | 30.0% | |
| GGTTACCAAAGAAAATTTAG+AGG | + | chr8_3:26159170-26159189 | Msa1284120:CDS | 30.0% | |
| AGACATTTAGCTGAAAATGT+AGG | + | chr8_3:26159483-26159502 | Msa1284120:CDS | 30.0% | |
| !!! | TCATATTGGTTTTCCTCTTA+AGG | + | chr8_3:26159546-26159565 | Msa1284120:CDS | 30.0% |
| !!! | CATATTGGTTTTCCTCTTAA+GGG | + | chr8_3:26159547-26159566 | Msa1284120:CDS | 30.0% |
| ACTTTGCATTTGCAATGTAA+AGG | - | chr8_3:26159635-26159654 | None:intergenic | 30.0% | |
| GTTTCTTTCATCTCTGATAG+AGG | - | chr8_3:26158109-26158128 | None:intergenic | 35.0% | |
| CAGGAAGATAAACATGAAGA+AGG | - | chr8_3:26158144-26158163 | None:intergenic | 35.0% | |
| CTTCTTCATGTTTATCTTCC+TGG | + | chr8_3:26158142-26158161 | Msa1284120:CDS | 35.0% | |
| ! | ACAAGTTAAAGGCATATACC+AGG | - | chr8_3:26158163-26158182 | None:intergenic | 35.0% |
| CGACCATGTAAACAAGTTAA+AGG | - | chr8_3:26158174-26158193 | None:intergenic | 35.0% | |
| ! | TCAAATGAAGATTGAGTTGC+TGG | + | chr8_3:26158411-26158430 | Msa1284120:CDS | 35.0% |
| ! | CTCCATTTGTTAACTGGAAT+CGG | - | chr8_3:26158472-26158491 | None:intergenic | 35.0% |
| !! | TTTCTGGAACAGGATATGTT+TGG | - | chr8_3:26158504-26158523 | None:intergenic | 35.0% |
| CTTGAAGCCAAATTTGAACA+AGG | + | chr8_3:26158541-26158560 | Msa1284120:CDS | 35.0% | |
| GAGAGTTCCTTGTTCAAATT+TGG | - | chr8_3:26158551-26158570 | None:intergenic | 35.0% | |
| ACTTGTGATGATTGTGAAGT+TGG | - | chr8_3:26158595-26158614 | None:intergenic | 35.0% | |
| !!! | TTTTTGTGGTGGTGGAATAT+TGG | - | chr8_3:26158698-26158717 | None:intergenic | 35.0% |
| TATTCCACCACCACAAAAAT+TGG | + | chr8_3:26158699-26158718 | Msa1284120:CDS | 35.0% | |
| ! | GATTCTTCCAATTTTTGTGG+TGG | - | chr8_3:26158709-26158728 | None:intergenic | 35.0% |
| !! | TCAATGCTTTGAGAAGTTTG+AGG | - | chr8_3:26158757-26158776 | None:intergenic | 35.0% |
| CAATGACAATAACCCTCAAA+AGG | + | chr8_3:26158834-26158853 | Msa1284120:CDS | 35.0% | |
| ! | ATTCTTGTTGACCCTTTTGA+GGG | - | chr8_3:26158849-26158868 | None:intergenic | 35.0% |
| ! | AATTCTTGTTGACCCTTTTG+AGG | - | chr8_3:26158850-26158869 | None:intergenic | 35.0% |
| !!! | TTGCTTTTTGGTTGTGTCTA+TGG | - | chr8_3:26158890-26158909 | None:intergenic | 35.0% |
| ! | AATTCTTCTTGACCCTTTTG+AGG | - | chr8_3:26158925-26158944 | None:intergenic | 35.0% |
| ! | GGCTTTTCATCTATTGATGT+TGG | - | chr8_3:26158958-26158977 | None:intergenic | 35.0% |
| ATAGATGAAAAGCCGCAAAA+TGG | + | chr8_3:26158964-26158983 | Msa1284120:CDS | 35.0% | |
| ! | TCCAATACTTGACCATTTTG+CGG | - | chr8_3:26158979-26158998 | None:intergenic | 35.0% |
| !!! | TTGTGTTTTGGTTCTCTCTA+TGG | - | chr8_3:26159016-26159035 | None:intergenic | 35.0% |
| AAAGCCTCAAAATGGTAAAG+AGG | + | chr8_3:26159044-26159063 | Msa1284120:CDS | 35.0% | |
| GAAAGAAAGGAACTCAAAGA+AGG | + | chr8_3:26159227-26159246 | Msa1284120:CDS | 35.0% | |
| TGATTCTTGCTTGACTCATA+AGG | - | chr8_3:26159279-26159298 | None:intergenic | 35.0% | |
| !!! | TTTTCCTTCTCTGGAACATT+TGG | - | chr8_3:26159345-26159364 | None:intergenic | 35.0% |
| AAATGTTCCAGAGAAGGAAA+AGG | + | chr8_3:26159344-26159363 | Msa1284120:CDS | 35.0% | |
| !! | AATTTGCTGCTACTTCTTCT+CGG | + | chr8_3:26159418-26159437 | Msa1284120:CDS | 35.0% |
| TTTGTGACAAGAATTGCAGA+AGG | + | chr8_3:26159441-26159460 | Msa1284120:CDS | 35.0% | |
| TTGTGACAAGAATTGCAGAA+GGG | + | chr8_3:26159442-26159461 | Msa1284120:CDS | 35.0% | |
| GGAAAACCAATATGACACAT+AGG | - | chr8_3:26159541-26159560 | None:intergenic | 35.0% | |
| CATTATAGTTCTCCCTTAAG+AGG | - | chr8_3:26159562-26159581 | None:intergenic | 35.0% | |
| GTTTCTTTCATCTCTGATAG+AGG | - | chr8_3:26158109-26158128 | None:intergenic | 35.0% | |
| CAGGAAGATAAACATGAAGA+AGG | - | chr8_3:26158144-26158163 | None:intergenic | 35.0% | |
| CTTCTTCATGTTTATCTTCC+TGG | + | chr8_3:26158142-26158161 | Msa1284120:CDS | 35.0% | |
| ! | ACAAGTTAAAGGCATATACC+AGG | - | chr8_3:26158163-26158182 | None:intergenic | 35.0% |
| CGACCATGTAAACAAGTTAA+AGG | - | chr8_3:26158174-26158193 | None:intergenic | 35.0% | |
| ! | TCAAATGAAGATTGAGTTGC+TGG | + | chr8_3:26158411-26158430 | Msa1284120:CDS | 35.0% |
| ! | CTCCATTTGTTAACTGGAAT+CGG | - | chr8_3:26158472-26158491 | None:intergenic | 35.0% |
| !! | TTTCTGGAACAGGATATGTT+TGG | - | chr8_3:26158504-26158523 | None:intergenic | 35.0% |
| CTTGAAGCCAAATTTGAACA+AGG | + | chr8_3:26158541-26158560 | Msa1284120:CDS | 35.0% | |
| GAGAGTTCCTTGTTCAAATT+TGG | - | chr8_3:26158551-26158570 | None:intergenic | 35.0% | |
| ACTTGTGATGATTGTGAAGT+TGG | - | chr8_3:26158595-26158614 | None:intergenic | 35.0% | |
| !!! | TTTTTGTGGTGGTGGAATAT+TGG | - | chr8_3:26158698-26158717 | None:intergenic | 35.0% |
| TATTCCACCACCACAAAAAT+TGG | + | chr8_3:26158699-26158718 | Msa1284120:CDS | 35.0% | |
| ! | GATTCTTCCAATTTTTGTGG+TGG | - | chr8_3:26158709-26158728 | None:intergenic | 35.0% |
| !! | TCAATGCTTTGAGAAGTTTG+AGG | - | chr8_3:26158757-26158776 | None:intergenic | 35.0% |
| CAATGACAATAACCCTCAAA+AGG | + | chr8_3:26158834-26158853 | Msa1284120:CDS | 35.0% | |
| ! | ATTCTTGTTGACCCTTTTGA+GGG | - | chr8_3:26158849-26158868 | None:intergenic | 35.0% |
| ! | AATTCTTGTTGACCCTTTTG+AGG | - | chr8_3:26158850-26158869 | None:intergenic | 35.0% |
| !!! | TTGCTTTTTGGTTGTGTCTA+TGG | - | chr8_3:26158890-26158909 | None:intergenic | 35.0% |
| ! | AATTCTTCTTGACCCTTTTG+AGG | - | chr8_3:26158925-26158944 | None:intergenic | 35.0% |
| ! | GGCTTTTCATCTATTGATGT+TGG | - | chr8_3:26158958-26158977 | None:intergenic | 35.0% |
| ATAGATGAAAAGCCGCAAAA+TGG | + | chr8_3:26158964-26158983 | Msa1284120:CDS | 35.0% | |
| ! | TCCAATACTTGACCATTTTG+CGG | - | chr8_3:26158979-26158998 | None:intergenic | 35.0% |
| !!! | TTGTGTTTTGGTTCTCTCTA+TGG | - | chr8_3:26159016-26159035 | None:intergenic | 35.0% |
| AAAGCCTCAAAATGGTAAAG+AGG | + | chr8_3:26159044-26159063 | Msa1284120:CDS | 35.0% | |
| GAAAGAAAGGAACTCAAAGA+AGG | + | chr8_3:26159227-26159246 | Msa1284120:CDS | 35.0% | |
| TGATTCTTGCTTGACTCATA+AGG | - | chr8_3:26159279-26159298 | None:intergenic | 35.0% | |
| !!! | TTTTCCTTCTCTGGAACATT+TGG | - | chr8_3:26159345-26159364 | None:intergenic | 35.0% |
| AAATGTTCCAGAGAAGGAAA+AGG | + | chr8_3:26159344-26159363 | Msa1284120:CDS | 35.0% | |
| !! | AATTTGCTGCTACTTCTTCT+CGG | + | chr8_3:26159418-26159437 | Msa1284120:CDS | 35.0% |
| TTTGTGACAAGAATTGCAGA+AGG | + | chr8_3:26159441-26159460 | Msa1284120:CDS | 35.0% | |
| TTGTGACAAGAATTGCAGAA+GGG | + | chr8_3:26159442-26159461 | Msa1284120:CDS | 35.0% | |
| GGAAAACCAATATGACACAT+AGG | - | chr8_3:26159541-26159560 | None:intergenic | 35.0% | |
| CATTATAGTTCTCCCTTAAG+AGG | - | chr8_3:26159562-26159581 | None:intergenic | 35.0% | |
| ! | CATTTAGAGCACCAACTTTC+CGG | + | chr8_3:26158044-26158063 | Msa1284120:CDS | 40.0% |
| ACATGAAGAAGGTAAGCTTC+AGG | - | chr8_3:26158133-26158152 | None:intergenic | 40.0% | |
| ! | GACCGATTCCAGTTAACAAA+TGG | + | chr8_3:26158467-26158486 | Msa1284120:CDS | 40.0% |
| TCCTGTTCCAGAAAATAGTG+TGG | + | chr8_3:26158510-26158529 | Msa1284120:CDS | 40.0% | |
| ! | TTCTCTGCCACACTATTTTC+TGG | - | chr8_3:26158520-26158539 | None:intergenic | 40.0% |
| ! | TCTTCCAATTTTTGTGGTGG+TGG | - | chr8_3:26158706-26158725 | None:intergenic | 40.0% |
| !!! | GTGTCTATGGATGTTGGTTT+TGG | - | chr8_3:26158877-26158896 | None:intergenic | 40.0% |
| TTGGTTGTGTCTATGGATGT+TGG | - | chr8_3:26158883-26158902 | None:intergenic | 40.0% | |
| ! | TTGGTTCTCTCTATGGATGT+TGG | - | chr8_3:26159009-26159028 | None:intergenic | 40.0% |
| !!! | TTGTGTTTTGGTTCTCTCTG+TGG | - | chr8_3:26159091-26159110 | None:intergenic | 40.0% |
| CTGAAGATGCTGAGAAAGAA+AGG | + | chr8_3:26159214-26159233 | Msa1284120:CDS | 40.0% | |
| AGAAAGGAACTCAAAGAAGG+AGG | + | chr8_3:26159230-26159249 | Msa1284120:CDS | 40.0% | |
| AGAATTCCTCCCAATCAAGA+AGG | + | chr8_3:26159378-26159397 | Msa1284120:CDS | 40.0% | |
| GAATTCCTCCCAATCAAGAA+GGG | + | chr8_3:26159379-26159398 | Msa1284120:CDS | 40.0% | |
| CCATTCTTCCCTTCTTGATT+GGG | - | chr8_3:26159390-26159409 | None:intergenic | 40.0% | |
| TCCATTCTTCCCTTCTTGAT+TGG | - | chr8_3:26159391-26159410 | None:intergenic | 40.0% | |
| ATTGCAGAAGGGAAATTGAG+TGG | + | chr8_3:26159453-26159472 | Msa1284120:CDS | 40.0% | |
| GTTCTAGTGATTGCTGCATT+TGG | + | chr8_3:26159513-26159532 | Msa1284120:CDS | 40.0% | |
| TTGGAGCCTATGTGTCATAT+TGG | + | chr8_3:26159532-26159551 | Msa1284120:CDS | 40.0% | |
| TTGATGTGCAAGTGTGAGAA+AGG | - | chr8_3:26159602-26159621 | None:intergenic | 40.0% | |
| ! | CATTTAGAGCACCAACTTTC+CGG | + | chr8_3:26158044-26158063 | Msa1284120:CDS | 40.0% |
| ACATGAAGAAGGTAAGCTTC+AGG | - | chr8_3:26158133-26158152 | None:intergenic | 40.0% | |
| ! | GACCGATTCCAGTTAACAAA+TGG | + | chr8_3:26158467-26158486 | Msa1284120:CDS | 40.0% |
| TCCTGTTCCAGAAAATAGTG+TGG | + | chr8_3:26158510-26158529 | Msa1284120:CDS | 40.0% | |
| ! | TTCTCTGCCACACTATTTTC+TGG | - | chr8_3:26158520-26158539 | None:intergenic | 40.0% |
| ! | TCTTCCAATTTTTGTGGTGG+TGG | - | chr8_3:26158706-26158725 | None:intergenic | 40.0% |
| !!! | GTGTCTATGGATGTTGGTTT+TGG | - | chr8_3:26158877-26158896 | None:intergenic | 40.0% |
| TTGGTTGTGTCTATGGATGT+TGG | - | chr8_3:26158883-26158902 | None:intergenic | 40.0% | |
| ! | TTGGTTCTCTCTATGGATGT+TGG | - | chr8_3:26159009-26159028 | None:intergenic | 40.0% |
| !!! | TTGTGTTTTGGTTCTCTCTG+TGG | - | chr8_3:26159091-26159110 | None:intergenic | 40.0% |
| CTGAAGATGCTGAGAAAGAA+AGG | + | chr8_3:26159214-26159233 | Msa1284120:CDS | 40.0% | |
| AGAAAGGAACTCAAAGAAGG+AGG | + | chr8_3:26159230-26159249 | Msa1284120:CDS | 40.0% | |
| AGAATTCCTCCCAATCAAGA+AGG | + | chr8_3:26159378-26159397 | Msa1284120:CDS | 40.0% | |
| GAATTCCTCCCAATCAAGAA+GGG | + | chr8_3:26159379-26159398 | Msa1284120:CDS | 40.0% | |
| CCATTCTTCCCTTCTTGATT+GGG | - | chr8_3:26159390-26159409 | None:intergenic | 40.0% | |
| TCCATTCTTCCCTTCTTGAT+TGG | - | chr8_3:26159391-26159410 | None:intergenic | 40.0% | |
| ATTGCAGAAGGGAAATTGAG+TGG | + | chr8_3:26159453-26159472 | Msa1284120:CDS | 40.0% | |
| GTTCTAGTGATTGCTGCATT+TGG | + | chr8_3:26159513-26159532 | Msa1284120:CDS | 40.0% | |
| TTGGAGCCTATGTGTCATAT+TGG | + | chr8_3:26159532-26159551 | Msa1284120:CDS | 40.0% | |
| TTGATGTGCAAGTGTGAGAA+AGG | - | chr8_3:26159602-26159621 | None:intergenic | 40.0% | |
| ! | ACAATGACACAGTTGATGCG+AGG | - | chr8_3:26158274-26158293 | None:intergenic | 45.0% |
| TGGACATGTCACGAAAGTTG+AGG | + | chr8_3:26158431-26158450 | Msa1284120:CDS | 45.0% | |
| GGACATGTCACGAAAGTTGA+GGG | + | chr8_3:26158432-26158451 | Msa1284120:CDS | 45.0% | |
| TCACGAAAGTTGAGGGTTAC+AGG | + | chr8_3:26158439-26158458 | Msa1284120:CDS | 45.0% | |
| !!! | GCCACACTATTTTCTGGAAC+AGG | - | chr8_3:26158514-26158533 | None:intergenic | 45.0% |
| GCCGCAAAATGGTCAAGTAT+TGG | + | chr8_3:26158975-26158994 | Msa1284120:CDS | 45.0% | |
| ! | TTGGTTCTCTCTGTGGATGT+TGG | - | chr8_3:26159084-26159103 | None:intergenic | 45.0% |
| AAAGGCTCAAAAGGGTGAAG+AGG | + | chr8_3:26159119-26159138 | Msa1284120:CDS | 45.0% | |
| TGCTCCAAATGTTCCAGAGA+AGG | + | chr8_3:26159338-26159357 | Msa1284120:CDS | 45.0% | |
| ! | CAAGCTTCCTTTTCCTTCTC+TGG | - | chr8_3:26159354-26159373 | None:intergenic | 45.0% |
| TTCTTCCCTTCTTGATTGGG+AGG | - | chr8_3:26159387-26159406 | None:intergenic | 45.0% | |
| CCCAATCAAGAAGGGAAGAA+TGG | + | chr8_3:26159387-26159406 | Msa1284120:CDS | 45.0% | |
| ! | ACAATGACACAGTTGATGCG+AGG | - | chr8_3:26158274-26158293 | None:intergenic | 45.0% |
| TGGACATGTCACGAAAGTTG+AGG | + | chr8_3:26158431-26158450 | Msa1284120:CDS | 45.0% | |
| GGACATGTCACGAAAGTTGA+GGG | + | chr8_3:26158432-26158451 | Msa1284120:CDS | 45.0% | |
| TCACGAAAGTTGAGGGTTAC+AGG | + | chr8_3:26158439-26158458 | Msa1284120:CDS | 45.0% | |
| !!! | GCCACACTATTTTCTGGAAC+AGG | - | chr8_3:26158514-26158533 | None:intergenic | 45.0% |
| GCCGCAAAATGGTCAAGTAT+TGG | + | chr8_3:26158975-26158994 | Msa1284120:CDS | 45.0% | |
| ! | TTGGTTCTCTCTGTGGATGT+TGG | - | chr8_3:26159084-26159103 | None:intergenic | 45.0% |
| AAAGGCTCAAAAGGGTGAAG+AGG | + | chr8_3:26159119-26159138 | Msa1284120:CDS | 45.0% | |
| TGCTCCAAATGTTCCAGAGA+AGG | + | chr8_3:26159338-26159357 | Msa1284120:CDS | 45.0% | |
| ! | CAAGCTTCCTTTTCCTTCTC+TGG | - | chr8_3:26159354-26159373 | None:intergenic | 45.0% |
| TTCTTCCCTTCTTGATTGGG+AGG | - | chr8_3:26159387-26159406 | None:intergenic | 45.0% | |
| CCCAATCAAGAAGGGAAGAA+TGG | + | chr8_3:26159387-26159406 | Msa1284120:CDS | 45.0% | |
| GAAAGTTGCGACCGGAAAGT+TGG | - | chr8_3:26158058-26158077 | None:intergenic | 50.0% | |
| GACGAACTGAAAGTTGCGAC+CGG | - | chr8_3:26158066-26158085 | None:intergenic | 50.0% | |
| GAAAGTTGCGACCGGAAAGT+TGG | - | chr8_3:26158058-26158077 | None:intergenic | 50.0% | |
| GACGAACTGAAAGTTGCGAC+CGG | - | chr8_3:26158066-26158085 | None:intergenic | 50.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_3 | gene | 26157953 | 26159696 | 26157953 | ID=Msa1284120;Name=Msa1284120 |
| chr8_3 | mRNA | 26157953 | 26159696 | 26157953 | ID=Msa1284120-mRNA-1;Parent=Msa1284120;Name=Msa1284120-mRNA-1;_AED=0.01;_eAED=0.01;_QI=69|1|1|1|1|1|2|130|436 |
| chr8_3 | exon | 26157953 | 26158163 | 26157953 | ID=Msa1284120-mRNA-1:exon:9095;Parent=Msa1284120-mRNA-1 |
| chr8_3 | exon | 26158398 | 26159696 | 26158398 | ID=Msa1284120-mRNA-1:exon:9096;Parent=Msa1284120-mRNA-1 |
| chr8_3 | five_prime_UTR | 26157953 | 26158021 | 26157953 | ID=Msa1284120-mRNA-1:five_prime_utr;Parent=Msa1284120-mRNA-1 |
| chr8_3 | CDS | 26158022 | 26158163 | 26158022 | ID=Msa1284120-mRNA-1:cds;Parent=Msa1284120-mRNA-1 |
| chr8_3 | CDS | 26158398 | 26159566 | 26158398 | ID=Msa1284120-mRNA-1:cds;Parent=Msa1284120-mRNA-1 |
| chr8_3 | three_prime_UTR | 26159567 | 26159696 | 26159567 | ID=Msa1284120-mRNA-1:three_prime_utr;Parent=Msa1284120-mRNA-1 |
| Gene Sequence |
| Protein sequence |
