AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0861610

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0861610 MtrunA17_Chr5g0395211 96.124 129 5 0 79 207 125 253 2.12e-91 268
Msa0861610 MtrunA17_Chr5g0395241 78.431 153 29 2 57 207 1 151 5.10e-84 245
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0861610 AT1G11755.1 57.143 133 48 4 80 207 126 254 3.80e-43 145

Find 66 sgRNAs with CRISPR-Local

Find 362 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CACCTTTGTAAAGTTGTAAA+TGG 0.225476 5_4:+60972378 None:intergenic
ACAAAGGTGCACCAAAATTA+TGG 0.241950 5_4:-60972364 Msa0861610:intron
CTCATTAATATAAAATTAAA+TGG 0.266112 5_4:-60973388 Msa0861610:CDS
CCACATAAGAAACAAATTCT+AGG 0.300604 5_4:+60973254 None:intergenic
TAATGTTTCTTGCAGGCATA+TGG 0.328728 5_4:-60972440 Msa0861610:intron
GTAAGAGGAAGGGGCGGGAC+TGG 0.374887 5_4:-60974043 Msa0861610:CDS
GAGGAAGGGGCGGGACTGGC+GGG 0.389418 5_4:-60974039 Msa0861610:CDS
TCGAAACGACATAACTTAGA+TGG 0.390062 5_4:-60973181 Msa0861610:CDS
ACCAGTAAAAGGTCAGGTTC+AGG 0.391442 5_4:+60972990 None:intergenic
AGAGGAAGGGGCGGGACTGG+CGG 0.393367 5_4:-60974040 Msa0861610:CDS
TGGCGGGTTGCGTGAGGTGC+AGG 0.395537 5_4:-60974023 Msa0861610:CDS
ATTAGAGCCTCGCTTGAATC+AGG 0.397997 5_4:-60973143 Msa0861610:CDS
CAGTATCATTGTAGCGTACA+TGG 0.399442 5_4:+60971776 None:intergenic
AGAGCAAAAGAGAATAATAA+TGG 0.408358 5_4:+60973440 None:intergenic
CCTAGAATTTGTTTCTTATG+TGG 0.429685 5_4:-60973254 Msa0861610:CDS
CGGGACTGGCGGGTTGCGTG+AGG 0.438587 5_4:-60974029 Msa0861610:CDS
AATTCTAGGGTCATGTGATC+TGG 0.448793 5_4:+60973268 None:intergenic
CATTGTTCTACGAATGGAGT+TGG 0.451528 5_4:-60974089 None:intergenic
CAGGTCCATAAACCAGTAAA+AGG 0.454297 5_4:+60972979 None:intergenic
GAATTTGTTTCTTATGTGGA+TGG 0.460892 5_4:-60973250 Msa0861610:CDS
CTAAATAAAGCAACAGTGTA+GGG 0.470592 5_4:+60971812 None:intergenic
GGACCTGTGAGGTGTCATCT+TGG 0.472694 5_4:-60972963 Msa0861610:CDS
CCAGTAAAAGGTCAGGTTCA+GGG 0.474062 5_4:+60972991 None:intergenic
AGATCGTCTCTTGAGGTAAG+AGG 0.482926 5_4:-60974058 Msa0861610:CDS
AATGTTTCTTGCAGGCATAT+GGG 0.488316 5_4:-60972439 Msa0861610:intron
GTTTGACTCTCAGGTTGCAA+AGG 0.491328 5_4:-60973014 Msa0861610:intron
GCGTGAGGTGCAGGATCTGC+GGG 0.503209 5_4:-60974014 Msa0861610:intron
TGCGTGAGGTGCAGGATCTG+CGG 0.503728 5_4:-60974015 Msa0861610:CDS
GCTAAATAAAGCAACAGTGT+AGG 0.504469 5_4:+60971811 None:intergenic
GGGATTGCTAACAGGTACAT+AGG 0.505887 5_4:-60972054 Msa0861610:intron
CCATAAACCAGTAAAAGGTC+AGG 0.511150 5_4:+60972984 None:intergenic
AATCAGGCACTGCAAATAGT+TGG 0.514010 5_4:-60973127 Msa0861610:intron
ATACCTAGCTATACATCTTG+TGG 0.526294 5_4:-60971966 Msa0861610:three_prime_UTR
TCGTTGAACTTCATGAGATA+CGG 0.527409 5_4:-60972415 Msa0861610:CDS
TCTCTTGAGGTAAGAGGAAG+GGG 0.527529 5_4:-60974052 Msa0861610:CDS
GCTATACATCTTGTGGAGGA+AGG 0.528139 5_4:-60971959 Msa0861610:three_prime_UTR
ATCTAGCTTTAACTCAATGC+AGG 0.532887 5_4:-60973320 Msa0861610:CDS
TACCTCAAGAGACGATCTCT+CGG 0.537006 5_4:+60974063 None:intergenic
CTATACATCTTGTGGAGGAA+GGG 0.541156 5_4:-60971958 Msa0861610:three_prime_UTR
CAACACTGAGGAGGCTAGTG+AGG 0.543525 5_4:+60971853 None:intergenic
CACATAAGAAACAAATTCTA+GGG 0.544320 5_4:+60973255 None:intergenic
CCTCCACAAGATGTATAGCT+AGG 0.548640 5_4:+60971963 None:intergenic
TTGAGGTAAGAGGAAGGGGC+GGG 0.550054 5_4:-60974048 Msa0861610:CDS
ATGTTTCTTGCAGGCATATG+GGG 0.565960 5_4:-60972438 Msa0861610:intron
GGGTCATGTGATCTGGTACA+TGG 0.568341 5_4:+60973275 None:intergenic
GTCTCTTGAGGTAAGAGGAA+GGG 0.569095 5_4:-60974053 Msa0861610:CDS
TGTTTCTTATGTGGATGGGA+AGG 0.570924 5_4:-60973245 Msa0861610:CDS
AATTTGTTTCTTATGTGGAT+GGG 0.571875 5_4:-60973249 Msa0861610:CDS
TTATGTGGATGGGAAGGAAG+CGG 0.581943 5_4:-60973239 Msa0861610:CDS
GTATACCGAATTCTCCATGC+AGG 0.584936 5_4:+60972936 None:intergenic
GGATTGCTAACAGGTACATA+GGG 0.587960 5_4:-60972053 Msa0861610:intron
TGCTAACAGGTACATAGGGA+AGG 0.598666 5_4:-60972049 Msa0861610:intron
CGTCTCTTGAGGTAAGAGGA+AGG 0.599865 5_4:-60974054 Msa0861610:CDS
AGTATCATTGTAGCGTACAT+GGG 0.601010 5_4:+60971777 None:intergenic
AAACCAAGATGACACCTCAC+AGG 0.610339 5_4:+60972960 None:intergenic
AGCCATTTACAACTTTACAA+AGG 0.614128 5_4:-60972380 Msa0861610:CDS
ATCCGAGAGATCGTCTCTTG+AGG 0.617910 5_4:-60974065 Msa0861610:CDS
AACACTGAGGAGGCTAGTGA+GGG 0.623438 5_4:+60971854 None:intergenic
CTCAAACAGCAACACTGAGG+AGG 0.625841 5_4:+60971844 None:intergenic
CCTAGCTATACATCTTGTGG+AGG 0.627239 5_4:-60971963 Msa0861610:three_prime_UTR
TGCAGTGCCTGATTCAAGCG+AGG 0.631728 5_4:+60973136 None:intergenic
ACTGTGCAAGCACAAAGCGT+AGG 0.637176 5_4:-60972005 Msa0861610:three_prime_UTR
TACTGGTTTATGGACCTGTG+AGG 0.647056 5_4:-60972974 Msa0861610:CDS
CTTGAGGTAAGAGGAAGGGG+CGG 0.658845 5_4:-60974049 Msa0861610:CDS
TGTGGATGGGAAGGAAGCGG+TGG 0.673507 5_4:-60973236 Msa0861610:CDS
AAACTCAAACAGCAACACTG+AGG 0.746155 5_4:+60971841 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AATTTTTTTAATTATTTTTT+CGG - chr5_4:60973736-60973755 Msa0861610:intron 0.0%
!!! AATTTTTTTAATTATTTTTT+CGG - chr5_4:60973736-60973755 Msa0861610:intron 0.0%
!! CTCATTAATATAAAATTAAA+TGG - chr5_4:60972423-60972442 Msa0861610:CDS 10.0%
!! CTCATTAATATAAAATTAAA+TGG - chr5_4:60972423-60972442 Msa0861610:CDS 10.0%
!! ATATATCATATATAATGGTA+AGG + chr5_4:60973652-60973671 None:intergenic 15.0%
!! ACATCATATATCATATATAA+TGG + chr5_4:60973657-60973676 None:intergenic 15.0%
!! ATATATCATATATAATGGTA+AGG + chr5_4:60973652-60973671 None:intergenic 15.0%
!! ACATCATATATCATATATAA+TGG + chr5_4:60973657-60973676 None:intergenic 15.0%
!!! TTTTATATTAATGAGTCGTA+TGG + chr5_4:60972418-60972437 None:intergenic 20.0%
!!! TTGTTTTCTTTATCATCATT+GGG - chr5_4:60972944-60972963 Msa0861610:CDS 20.0%
!! ATAAACTACTTTCATTTACA+TGG + chr5_4:60973103-60973122 None:intergenic 20.0%
!! AAGAGAGAATATAACAAAAA+AGG + chr5_4:60973174-60973193 None:intergenic 20.0%
!!! CTAAAAACTTACCATAATTT+TGG + chr5_4:60973461-60973480 None:intergenic 20.0%
!! TAAGATATAACAAACAGATA+TGG + chr5_4:60973524-60973543 None:intergenic 20.0%
!!! TTTTATATTAATGAGTCGTA+TGG + chr5_4:60972418-60972437 None:intergenic 20.0%
!!! TTGTTTTCTTTATCATCATT+GGG - chr5_4:60972944-60972963 Msa0861610:CDS 20.0%
!! ATAAACTACTTTCATTTACA+TGG + chr5_4:60973103-60973122 None:intergenic 20.0%
!! AAGAGAGAATATAACAAAAA+AGG + chr5_4:60973174-60973193 None:intergenic 20.0%
!!! CTAAAAACTTACCATAATTT+TGG + chr5_4:60973461-60973480 None:intergenic 20.0%
!! TAAGATATAACAAACAGATA+TGG + chr5_4:60973524-60973543 None:intergenic 20.0%
! AGAGCAAAAGAGAATAATAA+TGG + chr5_4:60972374-60972393 None:intergenic 25.0%
! CACATAAGAAACAAATTCTA+GGG + chr5_4:60972559-60972578 None:intergenic 25.0%
!! AATTTGTTTCTTATGTGGAT+GGG - chr5_4:60972562-60972581 Msa0861610:intron 25.0%
! TTAAAGTTTGAACTAGTAGT+AGG + chr5_4:60972727-60972746 None:intergenic 25.0%
!!! GTTGTTTTCTTTATCATCAT+TGG - chr5_4:60972943-60972962 Msa0861610:CDS 25.0%
! AGTAGTTTATAATCATCGAA+TGG - chr5_4:60973113-60973132 Msa0861610:intron 25.0%
! ATATATAATGGTAAGGAGTA+AGG + chr5_4:60973645-60973664 None:intergenic 25.0%
! AGAGCAAAAGAGAATAATAA+TGG + chr5_4:60972374-60972393 None:intergenic 25.0%
! CACATAAGAAACAAATTCTA+GGG + chr5_4:60972559-60972578 None:intergenic 25.0%
!! AATTTGTTTCTTATGTGGAT+GGG - chr5_4:60972562-60972581 Msa0861610:intron 25.0%
! TTAAAGTTTGAACTAGTAGT+AGG + chr5_4:60972727-60972746 None:intergenic 25.0%
!!! GTTGTTTTCTTTATCATCAT+TGG - chr5_4:60972943-60972962 Msa0861610:CDS 25.0%
! AGTAGTTTATAATCATCGAA+TGG - chr5_4:60973113-60973132 Msa0861610:intron 25.0%
! ATATATAATGGTAAGGAGTA+AGG + chr5_4:60973645-60973664 None:intergenic 25.0%
AAAACAAACTACCCACTATA+CGG + chr5_4:60972127-60972146 None:intergenic 30.0%
AAAAGGAAACCGAAATACAA+AGG + chr5_4:60972199-60972218 None:intergenic 30.0%
GTATGGATGCATAGAAAAAA+TGG + chr5_4:60972401-60972420 None:intergenic 30.0%
CCACATAAGAAACAAATTCT+AGG + chr5_4:60972560-60972579 None:intergenic 30.0%
! CCTAGAATTTGTTTCTTATG+TGG - chr5_4:60972557-60972576 Msa0861610:intron 30.0%
! GAATTTGTTTCTTATGTGGA+TGG - chr5_4:60972561-60972580 Msa0861610:intron 30.0%
AAAAATCATGTTAGCTGCTT+TGG + chr5_4:60972601-60972620 None:intergenic 30.0%
TTTGAACTAGTAGTAGGTTT+AGG + chr5_4:60972721-60972740 None:intergenic 30.0%
!! AGATAGTGTAAGTTGTTTCT+AGG - chr5_4:60972900-60972919 Msa0861610:intron 30.0%
GTTTATAATCATCGAATGGT+CGG - chr5_4:60973117-60973136 Msa0861610:intron 30.0%
AGCCATTTACAACTTTACAA+AGG - chr5_4:60973431-60973450 Msa0861610:CDS 30.0%
CACCTTTGTAAAGTTGTAAA+TGG + chr5_4:60973436-60973455 None:intergenic 30.0%
TTTGTGTAACTTCTACTTGA+AGG + chr5_4:60973576-60973595 None:intergenic 30.0%
AGTAGGTAGTATACTAGTAT+AGG + chr5_4:60973599-60973618 None:intergenic 30.0%
TAACTGTACCTATAGTTCAA+AGG + chr5_4:60973683-60973702 None:intergenic 30.0%
CTAAATAAAGCAACAGTGTA+GGG + chr5_4:60974002-60974021 None:intergenic 30.0%
AAAACAAACTACCCACTATA+CGG + chr5_4:60972127-60972146 None:intergenic 30.0%
AAAAGGAAACCGAAATACAA+AGG + chr5_4:60972199-60972218 None:intergenic 30.0%
GTATGGATGCATAGAAAAAA+TGG + chr5_4:60972401-60972420 None:intergenic 30.0%
CCACATAAGAAACAAATTCT+AGG + chr5_4:60972560-60972579 None:intergenic 30.0%
! CCTAGAATTTGTTTCTTATG+TGG - chr5_4:60972557-60972576 Msa0861610:intron 30.0%
! GAATTTGTTTCTTATGTGGA+TGG - chr5_4:60972561-60972580 Msa0861610:intron 30.0%
AAAAATCATGTTAGCTGCTT+TGG + chr5_4:60972601-60972620 None:intergenic 30.0%
TTTGAACTAGTAGTAGGTTT+AGG + chr5_4:60972721-60972740 None:intergenic 30.0%
!! AGATAGTGTAAGTTGTTTCT+AGG - chr5_4:60972900-60972919 Msa0861610:intron 30.0%
GTTTATAATCATCGAATGGT+CGG - chr5_4:60973117-60973136 Msa0861610:intron 30.0%
AGCCATTTACAACTTTACAA+AGG - chr5_4:60973431-60973450 Msa0861610:CDS 30.0%
CACCTTTGTAAAGTTGTAAA+TGG + chr5_4:60973436-60973455 None:intergenic 30.0%
TTTGTGTAACTTCTACTTGA+AGG + chr5_4:60973576-60973595 None:intergenic 30.0%
AGTAGGTAGTATACTAGTAT+AGG + chr5_4:60973599-60973618 None:intergenic 30.0%
TAACTGTACCTATAGTTCAA+AGG + chr5_4:60973683-60973702 None:intergenic 30.0%
CTAAATAAAGCAACAGTGTA+GGG + chr5_4:60974002-60974021 None:intergenic 30.0%
!!! CCTTCTGTTGTTTTCACTTT+GGG - chr5_4:60971977-60971996 Msa0861610:three_prime_UTR 35.0%
!! CAGATTTTAGTCCGTATAGT+GGG - chr5_4:60972113-60972132 Msa0861610:intron 35.0%
!!! TAGTGGGTAGTTTGTTTTTG+TGG - chr5_4:60972129-60972148 Msa0861610:intron 35.0%
! TGTATTTCGGTTTCCTTTTG+CGG - chr5_4:60972200-60972219 Msa0861610:intron 35.0%
!! TCATTCTCTTAGTTTGTGTG+AGG + chr5_4:60972308-60972327 None:intergenic 35.0%
!! ATCTAGCTTTAACTCAATGC+AGG - chr5_4:60972491-60972510 Msa0861610:intron 35.0%
TCGAAACGACATAACTTAGA+TGG - chr5_4:60972630-60972649 Msa0861610:intron 35.0%
AGAGAATGTTATACTGCACA+AGG + chr5_4:60972761-60972780 None:intergenic 35.0%
TTGTGCAGTATAACATTCTC+TGG - chr5_4:60972760-60972779 Msa0861610:intron 35.0%
!! AGTTAGCTCGTTTGTTTTCA+TGG - chr5_4:60972976-60972995 Msa0861610:CDS 35.0%
AGTTAGCTACTCTGTTACAT+AGG - chr5_4:60973018-60973037 Msa0861610:intron 35.0%
GAATGGTCGGTGAATATAAT+TGG - chr5_4:60973130-60973149 Msa0861610:CDS 35.0%
TTCCGATTAATGTTTCTTGC+AGG - chr5_4:60973364-60973383 Msa0861610:CDS 35.0%
TGCCTGCAAGAAACATTAAT+CGG + chr5_4:60973369-60973388 None:intergenic 35.0%
TAATGTTTCTTGCAGGCATA+TGG - chr5_4:60973371-60973390 Msa0861610:CDS 35.0%
AATGTTTCTTGCAGGCATAT+GGG - chr5_4:60973372-60973391 Msa0861610:CDS 35.0%
TCGTTGAACTTCATGAGATA+CGG - chr5_4:60973396-60973415 Msa0861610:CDS 35.0%
! ACAAAGGTGCACCAAAATTA+TGG - chr5_4:60973447-60973466 Msa0861610:CDS 35.0%
!!! AAGGATGTGAGCTAGTTTTT+GGG + chr5_4:60973557-60973576 None:intergenic 35.0%
GATGTTTGCCTTTGAACTAT+AGG - chr5_4:60973672-60973691 Msa0861610:intron 35.0%
!!! ATTTTTTCGGGATTGCTAAC+AGG - chr5_4:60973749-60973768 Msa0861610:intron 35.0%
ATACCTAGCTATACATCTTG+TGG - chr5_4:60973845-60973864 Msa0861610:intron 35.0%
GCTAAATAAAGCAACAGTGT+AGG + chr5_4:60974003-60974022 None:intergenic 35.0%
AGTATCATTGTAGCGTACAT+GGG + chr5_4:60974037-60974056 None:intergenic 35.0%
!!! CCTTCTGTTGTTTTCACTTT+GGG - chr5_4:60971977-60971996 Msa0861610:three_prime_UTR 35.0%
!! CAGATTTTAGTCCGTATAGT+GGG - chr5_4:60972113-60972132 Msa0861610:intron 35.0%
!!! TAGTGGGTAGTTTGTTTTTG+TGG - chr5_4:60972129-60972148 Msa0861610:intron 35.0%
! TGTATTTCGGTTTCCTTTTG+CGG - chr5_4:60972200-60972219 Msa0861610:intron 35.0%
!! TCATTCTCTTAGTTTGTGTG+AGG + chr5_4:60972308-60972327 None:intergenic 35.0%
!! ATCTAGCTTTAACTCAATGC+AGG - chr5_4:60972491-60972510 Msa0861610:intron 35.0%
TCGAAACGACATAACTTAGA+TGG - chr5_4:60972630-60972649 Msa0861610:intron 35.0%
AGAGAATGTTATACTGCACA+AGG + chr5_4:60972761-60972780 None:intergenic 35.0%
TTGTGCAGTATAACATTCTC+TGG - chr5_4:60972760-60972779 Msa0861610:intron 35.0%
!! AGTTAGCTCGTTTGTTTTCA+TGG - chr5_4:60972976-60972995 Msa0861610:CDS 35.0%
AGTTAGCTACTCTGTTACAT+AGG - chr5_4:60973018-60973037 Msa0861610:intron 35.0%
GAATGGTCGGTGAATATAAT+TGG - chr5_4:60973130-60973149 Msa0861610:CDS 35.0%
TTCCGATTAATGTTTCTTGC+AGG - chr5_4:60973364-60973383 Msa0861610:CDS 35.0%
TGCCTGCAAGAAACATTAAT+CGG + chr5_4:60973369-60973388 None:intergenic 35.0%
TAATGTTTCTTGCAGGCATA+TGG - chr5_4:60973371-60973390 Msa0861610:CDS 35.0%
AATGTTTCTTGCAGGCATAT+GGG - chr5_4:60973372-60973391 Msa0861610:CDS 35.0%
TCGTTGAACTTCATGAGATA+CGG - chr5_4:60973396-60973415 Msa0861610:CDS 35.0%
! ACAAAGGTGCACCAAAATTA+TGG - chr5_4:60973447-60973466 Msa0861610:CDS 35.0%
!!! AAGGATGTGAGCTAGTTTTT+GGG + chr5_4:60973557-60973576 None:intergenic 35.0%
GATGTTTGCCTTTGAACTAT+AGG - chr5_4:60973672-60973691 Msa0861610:intron 35.0%
!!! ATTTTTTCGGGATTGCTAAC+AGG - chr5_4:60973749-60973768 Msa0861610:intron 35.0%
ATACCTAGCTATACATCTTG+TGG - chr5_4:60973845-60973864 Msa0861610:intron 35.0%
GCTAAATAAAGCAACAGTGT+AGG + chr5_4:60974003-60974022 None:intergenic 35.0%
AGTATCATTGTAGCGTACAT+GGG + chr5_4:60974037-60974056 None:intergenic 35.0%
! GTGACTGGGTTAATTAGTCT+GGG - chr5_4:60971819-60971838 Msa0861610:three_prime_UTR 40.0%
!!! GCCTTCTGTTGTTTTCACTT+TGG - chr5_4:60971976-60971995 Msa0861610:three_prime_UTR 40.0%
CCCAAAGTGAAAACAACAGA+AGG + chr5_4:60971980-60971999 None:intergenic 40.0%
AGCACAGGGAACACAAAAAA+AGG + chr5_4:60972010-60972029 None:intergenic 40.0%
CCATAAACCAAAACAGCACA+GGG + chr5_4:60972024-60972043 None:intergenic 40.0%
ACCATAAACCAAAACAGCAC+AGG + chr5_4:60972025-60972044 None:intergenic 40.0%
CTACACTTTGCAACAGCTTA+AGG + chr5_4:60972062-60972081 None:intergenic 40.0%
CTGTTGCAAAGTGTAGATGA+GGG - chr5_4:60972066-60972085 Msa0861610:intron 40.0%
TGTTGCAAAGTGTAGATGAG+GGG - chr5_4:60972067-60972086 Msa0861610:intron 40.0%
! CCACTATACGGACTAAAATC+TGG + chr5_4:60972115-60972134 None:intergenic 40.0%
!! CCAGATTTTAGTCCGTATAG+TGG - chr5_4:60972112-60972131 Msa0861610:intron 40.0%
! AATACAAAGGCGCGGTATAT+AGG + chr5_4:60972186-60972205 None:intergenic 40.0%
TATACCGCGCCTTTGTATTT+CGG - chr5_4:60972187-60972206 Msa0861610:intron 40.0%
!! AATTCTAGGGTCATGTGATC+TGG + chr5_4:60972546-60972565 None:intergenic 40.0%
TGTTTCTTATGTGGATGGGA+AGG - chr5_4:60972566-60972585 Msa0861610:intron 40.0%
! AATCAGGCACTGCAAATAGT+TGG - chr5_4:60972684-60972703 Msa0861610:intron 40.0%
! GACAATCTTGTTTGACTCTC+AGG - chr5_4:60972788-60972807 Msa0861610:intron 40.0%
CCATAAACCAGTAAAAGGTC+AGG + chr5_4:60972830-60972849 None:intergenic 40.0%
!!! CCTGACCTTTTACTGGTTTA+TGG - chr5_4:60972827-60972846 Msa0861610:intron 40.0%
CAGGTCCATAAACCAGTAAA+AGG + chr5_4:60972835-60972854 None:intergenic 40.0%
! GTTTTCCTGCATGGAGAATT+CGG - chr5_4:60972870-60972889 Msa0861610:intron 40.0%
TGCATAGTAAACCTGTAACG+AGG - chr5_4:60973195-60973214 Msa0861610:CDS 40.0%
!! TGCGTGGAGGTTCATTTTTA+AGG + chr5_4:60973263-60973282 None:intergenic 40.0%
ATGTTTCTTGCAGGCATATG+GGG - chr5_4:60973373-60973392 Msa0861610:CDS 40.0%
!!! GAGCTAGTTTTTGGGTAATC+TGG + chr5_4:60973549-60973568 None:intergenic 40.0%
!!! GAAGGATGTGAGCTAGTTTT+TGG + chr5_4:60973558-60973577 None:intergenic 40.0%
TGGTAAGGAGTAAGGACTAA+GGG + chr5_4:60973637-60973656 None:intergenic 40.0%
ATGGTAAGGAGTAAGGACTA+AGG + chr5_4:60973638-60973657 None:intergenic 40.0%
GGATTGCTAACAGGTACATA+GGG - chr5_4:60973758-60973777 Msa0861610:intron 40.0%
CTATACATCTTGTGGAGGAA+GGG - chr5_4:60973853-60973872 Msa0861610:intron 40.0%
AAACTCAAACAGCAACACTG+AGG + chr5_4:60973973-60973992 None:intergenic 40.0%
CAGTATCATTGTAGCGTACA+TGG + chr5_4:60974038-60974057 None:intergenic 40.0%
! GTGACTGGGTTAATTAGTCT+GGG - chr5_4:60971819-60971838 Msa0861610:three_prime_UTR 40.0%
!!! GCCTTCTGTTGTTTTCACTT+TGG - chr5_4:60971976-60971995 Msa0861610:three_prime_UTR 40.0%
CCCAAAGTGAAAACAACAGA+AGG + chr5_4:60971980-60971999 None:intergenic 40.0%
AGCACAGGGAACACAAAAAA+AGG + chr5_4:60972010-60972029 None:intergenic 40.0%
CCATAAACCAAAACAGCACA+GGG + chr5_4:60972024-60972043 None:intergenic 40.0%
ACCATAAACCAAAACAGCAC+AGG + chr5_4:60972025-60972044 None:intergenic 40.0%
CTACACTTTGCAACAGCTTA+AGG + chr5_4:60972062-60972081 None:intergenic 40.0%
CTGTTGCAAAGTGTAGATGA+GGG - chr5_4:60972066-60972085 Msa0861610:intron 40.0%
TGTTGCAAAGTGTAGATGAG+GGG - chr5_4:60972067-60972086 Msa0861610:intron 40.0%
! CCACTATACGGACTAAAATC+TGG + chr5_4:60972115-60972134 None:intergenic 40.0%
!! CCAGATTTTAGTCCGTATAG+TGG - chr5_4:60972112-60972131 Msa0861610:intron 40.0%
! AATACAAAGGCGCGGTATAT+AGG + chr5_4:60972186-60972205 None:intergenic 40.0%
TATACCGCGCCTTTGTATTT+CGG - chr5_4:60972187-60972206 Msa0861610:intron 40.0%
!! AATTCTAGGGTCATGTGATC+TGG + chr5_4:60972546-60972565 None:intergenic 40.0%
TGTTTCTTATGTGGATGGGA+AGG - chr5_4:60972566-60972585 Msa0861610:intron 40.0%
! AATCAGGCACTGCAAATAGT+TGG - chr5_4:60972684-60972703 Msa0861610:intron 40.0%
! GACAATCTTGTTTGACTCTC+AGG - chr5_4:60972788-60972807 Msa0861610:intron 40.0%
CCATAAACCAGTAAAAGGTC+AGG + chr5_4:60972830-60972849 None:intergenic 40.0%
!!! CCTGACCTTTTACTGGTTTA+TGG - chr5_4:60972827-60972846 Msa0861610:intron 40.0%
CAGGTCCATAAACCAGTAAA+AGG + chr5_4:60972835-60972854 None:intergenic 40.0%
! GTTTTCCTGCATGGAGAATT+CGG - chr5_4:60972870-60972889 Msa0861610:intron 40.0%
TGCATAGTAAACCTGTAACG+AGG - chr5_4:60973195-60973214 Msa0861610:CDS 40.0%
!! TGCGTGGAGGTTCATTTTTA+AGG + chr5_4:60973263-60973282 None:intergenic 40.0%
ATGTTTCTTGCAGGCATATG+GGG - chr5_4:60973373-60973392 Msa0861610:CDS 40.0%
!!! GAGCTAGTTTTTGGGTAATC+TGG + chr5_4:60973549-60973568 None:intergenic 40.0%
!!! GAAGGATGTGAGCTAGTTTT+TGG + chr5_4:60973558-60973577 None:intergenic 40.0%
TGGTAAGGAGTAAGGACTAA+GGG + chr5_4:60973637-60973656 None:intergenic 40.0%
ATGGTAAGGAGTAAGGACTA+AGG + chr5_4:60973638-60973657 None:intergenic 40.0%
GGATTGCTAACAGGTACATA+GGG - chr5_4:60973758-60973777 Msa0861610:intron 40.0%
CTATACATCTTGTGGAGGAA+GGG - chr5_4:60973853-60973872 Msa0861610:intron 40.0%
AAACTCAAACAGCAACACTG+AGG + chr5_4:60973973-60973992 None:intergenic 40.0%
CAGTATCATTGTAGCGTACA+TGG + chr5_4:60974038-60974057 None:intergenic 40.0%
TACCTCAAGAGACGATCTCT+CGG + chr5_4:60971751-60971770 None:intergenic 45.0%
AGATCGTCTCTTGAGGTAAG+AGG - chr5_4:60971753-60971772 Msa0861610:three_prime_UTR 45.0%
GTCTCTTGAGGTAAGAGGAA+GGG - chr5_4:60971758-60971777 Msa0861610:three_prime_UTR 45.0%
TCTCTTGAGGTAAGAGGAAG+GGG - chr5_4:60971759-60971778 Msa0861610:three_prime_UTR 45.0%
GGTGACTGGGTTAATTAGTC+TGG - chr5_4:60971818-60971837 Msa0861610:three_prime_UTR 45.0%
!! GGAGAGACTTGGTGTTTGAA+CGG - chr5_4:60971933-60971952 Msa0861610:three_prime_UTR 45.0%
!! ACTTGGTGTTTGAACGGTCT+TGG - chr5_4:60971939-60971958 Msa0861610:three_prime_UTR 45.0%
!!! ACGGTCTTGGCTGGTTTTTT+TGG - chr5_4:60971952-60971971 Msa0861610:three_prime_UTR 45.0%
!!! TTGTGTTCCCTGTGCTGTTT+TGG - chr5_4:60972014-60972033 Msa0861610:three_prime_UTR 45.0%
!!! CCCTGTGCTGTTTTGGTTTA+TGG - chr5_4:60972021-60972040 Msa0861610:three_prime_UTR 45.0%
GCTGTTGCAAAGTGTAGATG+AGG - chr5_4:60972065-60972084 Msa0861610:intron 45.0%
GGGGAATCTGCTAAAGTTGT+TGG - chr5_4:60972086-60972105 Msa0861610:intron 45.0%
!! CACATGTGTCGCTTTGTTCT+CGG - chr5_4:60972152-60972171 Msa0861610:intron 45.0%
!! ACATGTGTCGCTTTGTTCTC+GGG - chr5_4:60972153-60972172 Msa0861610:intron 45.0%
GAAACCGAAATACAAAGGCG+CGG + chr5_4:60972194-60972213 None:intergenic 45.0%
AAACCTGCACAAGATGCAGA+AGG + chr5_4:60972226-60972245 None:intergenic 45.0%
TTTAGAGGGGGAAGAAGACA+GGG + chr5_4:60972333-60972352 None:intergenic 45.0%
!! TTCTTCCCCCTCTAAAGCAA+TGG - chr5_4:60972337-60972356 Msa0861610:intron 45.0%
! TCTCCCTCCATTGCTTTAGA+GGG + chr5_4:60972347-60972366 None:intergenic 45.0%
TTCTCCCTCCATTGCTTTAG+AGG + chr5_4:60972348-60972367 None:intergenic 45.0%
TTATGTGGATGGGAAGGAAG+CGG - chr5_4:60972572-60972591 Msa0861610:intron 45.0%
ATTAGAGCCTCGCTTGAATC+AGG - chr5_4:60972668-60972687 Msa0861610:intron 45.0%
! GTTTGACTCTCAGGTTGCAA+AGG - chr5_4:60972797-60972816 Msa0861610:intron 45.0%
CCAGTAAAAGGTCAGGTTCA+GGG + chr5_4:60972823-60972842 None:intergenic 45.0%
ACCAGTAAAAGGTCAGGTTC+AGG + chr5_4:60972824-60972843 None:intergenic 45.0%
!! TACTGGTTTATGGACCTGTG+AGG - chr5_4:60972837-60972856 Msa0861610:intron 45.0%
AAACCAAGATGACACCTCAC+AGG + chr5_4:60972854-60972873 None:intergenic 45.0%
!! GTCATCTTGGTTTTCCTGCA+TGG - chr5_4:60972861-60972880 Msa0861610:intron 45.0%
GTATACCGAATTCTCCATGC+AGG + chr5_4:60972878-60972897 None:intergenic 45.0%
! TAGGCATTTTGCTCTGCGTT+AGG - chr5_4:60973037-60973056 Msa0861610:intron 45.0%
CATGAAACCTATGCAATGCG+TGG + chr5_4:60973279-60973298 None:intergenic 45.0%
GGTAAGGAGTAAGGACTAAG+GGG + chr5_4:60973636-60973655 None:intergenic 45.0%
GGGATTGCTAACAGGTACAT+AGG - chr5_4:60973757-60973776 Msa0861610:intron 45.0%
TGCTAACAGGTACATAGGGA+AGG - chr5_4:60973762-60973781 Msa0861610:intron 45.0%
CCTCCACAAGATGTATAGCT+AGG + chr5_4:60973851-60973870 None:intergenic 45.0%
CCTAGCTATACATCTTGTGG+AGG - chr5_4:60973848-60973867 Msa0861610:intron 45.0%
GCTATACATCTTGTGGAGGA+AGG - chr5_4:60973852-60973871 Msa0861610:intron 45.0%
TACCTCAAGAGACGATCTCT+CGG + chr5_4:60971751-60971770 None:intergenic 45.0%
AGATCGTCTCTTGAGGTAAG+AGG - chr5_4:60971753-60971772 Msa0861610:three_prime_UTR 45.0%
GTCTCTTGAGGTAAGAGGAA+GGG - chr5_4:60971758-60971777 Msa0861610:three_prime_UTR 45.0%
TCTCTTGAGGTAAGAGGAAG+GGG - chr5_4:60971759-60971778 Msa0861610:three_prime_UTR 45.0%
GGTGACTGGGTTAATTAGTC+TGG - chr5_4:60971818-60971837 Msa0861610:three_prime_UTR 45.0%
!! GGAGAGACTTGGTGTTTGAA+CGG - chr5_4:60971933-60971952 Msa0861610:three_prime_UTR 45.0%
!! ACTTGGTGTTTGAACGGTCT+TGG - chr5_4:60971939-60971958 Msa0861610:three_prime_UTR 45.0%
!!! ACGGTCTTGGCTGGTTTTTT+TGG - chr5_4:60971952-60971971 Msa0861610:three_prime_UTR 45.0%
!!! TTGTGTTCCCTGTGCTGTTT+TGG - chr5_4:60972014-60972033 Msa0861610:three_prime_UTR 45.0%
!!! CCCTGTGCTGTTTTGGTTTA+TGG - chr5_4:60972021-60972040 Msa0861610:three_prime_UTR 45.0%
GCTGTTGCAAAGTGTAGATG+AGG - chr5_4:60972065-60972084 Msa0861610:intron 45.0%
GGGGAATCTGCTAAAGTTGT+TGG - chr5_4:60972086-60972105 Msa0861610:intron 45.0%
!! CACATGTGTCGCTTTGTTCT+CGG - chr5_4:60972152-60972171 Msa0861610:intron 45.0%
!! ACATGTGTCGCTTTGTTCTC+GGG - chr5_4:60972153-60972172 Msa0861610:intron 45.0%
GAAACCGAAATACAAAGGCG+CGG + chr5_4:60972194-60972213 None:intergenic 45.0%
AAACCTGCACAAGATGCAGA+AGG + chr5_4:60972226-60972245 None:intergenic 45.0%
TTTAGAGGGGGAAGAAGACA+GGG + chr5_4:60972333-60972352 None:intergenic 45.0%
!! TTCTTCCCCCTCTAAAGCAA+TGG - chr5_4:60972337-60972356 Msa0861610:intron 45.0%
! TCTCCCTCCATTGCTTTAGA+GGG + chr5_4:60972347-60972366 None:intergenic 45.0%
TTCTCCCTCCATTGCTTTAG+AGG + chr5_4:60972348-60972367 None:intergenic 45.0%
TTATGTGGATGGGAAGGAAG+CGG - chr5_4:60972572-60972591 Msa0861610:intron 45.0%
ATTAGAGCCTCGCTTGAATC+AGG - chr5_4:60972668-60972687 Msa0861610:intron 45.0%
! GTTTGACTCTCAGGTTGCAA+AGG - chr5_4:60972797-60972816 Msa0861610:intron 45.0%
CCAGTAAAAGGTCAGGTTCA+GGG + chr5_4:60972823-60972842 None:intergenic 45.0%
ACCAGTAAAAGGTCAGGTTC+AGG + chr5_4:60972824-60972843 None:intergenic 45.0%
!! TACTGGTTTATGGACCTGTG+AGG - chr5_4:60972837-60972856 Msa0861610:intron 45.0%
AAACCAAGATGACACCTCAC+AGG + chr5_4:60972854-60972873 None:intergenic 45.0%
!! GTCATCTTGGTTTTCCTGCA+TGG - chr5_4:60972861-60972880 Msa0861610:intron 45.0%
GTATACCGAATTCTCCATGC+AGG + chr5_4:60972878-60972897 None:intergenic 45.0%
! TAGGCATTTTGCTCTGCGTT+AGG - chr5_4:60973037-60973056 Msa0861610:intron 45.0%
CATGAAACCTATGCAATGCG+TGG + chr5_4:60973279-60973298 None:intergenic 45.0%
GGTAAGGAGTAAGGACTAAG+GGG + chr5_4:60973636-60973655 None:intergenic 45.0%
GGGATTGCTAACAGGTACAT+AGG - chr5_4:60973757-60973776 Msa0861610:intron 45.0%
TGCTAACAGGTACATAGGGA+AGG - chr5_4:60973762-60973781 Msa0861610:intron 45.0%
CCTCCACAAGATGTATAGCT+AGG + chr5_4:60973851-60973870 None:intergenic 45.0%
CCTAGCTATACATCTTGTGG+AGG - chr5_4:60973848-60973867 Msa0861610:intron 45.0%
GCTATACATCTTGTGGAGGA+AGG - chr5_4:60973852-60973871 Msa0861610:intron 45.0%
!!! ATTTTTTTAATTATTTTTTC+GGG - chr5_4:60973737-60973756 Msa0861610:intron 5.0%
!!! ATTTTTTTAATTATTTTTTC+GGG - chr5_4:60973737-60973756 Msa0861610:intron 5.0%
ATCCGAGAGATCGTCTCTTG+AGG - chr5_4:60971746-60971765 Msa0861610:three_prime_UTR 50.0%
CGTCTCTTGAGGTAAGAGGA+AGG - chr5_4:60971757-60971776 Msa0861610:three_prime_UTR 50.0%
! ACAAAGGCGCGGTATATAGG+CGG + chr5_4:60972183-60972202 None:intergenic 50.0%
AAGATGCAGAAGGCCGCAAA+AGG + chr5_4:60972216-60972235 None:intergenic 50.0%
! CTTTAGAGGGGGAAGAAGAC+AGG + chr5_4:60972334-60972353 None:intergenic 50.0%
!! TTCCCCCTCTAAAGCAATGG+AGG - chr5_4:60972340-60972359 Msa0861610:intron 50.0%
!! TCCCCCTCTAAAGCAATGGA+GGG - chr5_4:60972341-60972360 Msa0861610:intron 50.0%
!! TCCCTCCATTGCTTTAGAGG+GGG + chr5_4:60972345-60972364 None:intergenic 50.0%
!! CTCCCTCCATTGCTTTAGAG+GGG + chr5_4:60972346-60972365 None:intergenic 50.0%
GGGTCATGTGATCTGGTACA+TGG + chr5_4:60972539-60972558 None:intergenic 50.0%
! CCCTGAACCTGACCTTTTAC+TGG - chr5_4:60972820-60972839 Msa0861610:intron 50.0%
GCTCTGCGTTAGGCTTATTG+TGG - chr5_4:60973047-60973066 Msa0861610:intron 50.0%
GCAACTAGCAACCTCGTTAC+AGG + chr5_4:60973209-60973228 None:intergenic 50.0%
!! GGTTTGCTGCATCAGCAACA+TGG + chr5_4:60973242-60973261 None:intergenic 50.0%
TGAACCTCCACGCATTGCAT+AGG - chr5_4:60973269-60973288 Msa0861610:CDS 50.0%
GAAACCTATGCAATGCGTGG+AGG + chr5_4:60973276-60973295 None:intergenic 50.0%
GGGTCGTCTGTCAACAAAGT+AGG + chr5_4:60973616-60973635 None:intergenic 50.0%
ACTGTGCAAGCACAAAGCGT+AGG - chr5_4:60973806-60973825 Msa0861610:intron 50.0%
AACACTGAGGAGGCTAGTGA+GGG + chr5_4:60973960-60973979 None:intergenic 50.0%
CTCAAACAGCAACACTGAGG+AGG + chr5_4:60973970-60973989 None:intergenic 50.0%
ATCCGAGAGATCGTCTCTTG+AGG - chr5_4:60971746-60971765 Msa0861610:three_prime_UTR 50.0%
CGTCTCTTGAGGTAAGAGGA+AGG - chr5_4:60971757-60971776 Msa0861610:three_prime_UTR 50.0%
! ACAAAGGCGCGGTATATAGG+CGG + chr5_4:60972183-60972202 None:intergenic 50.0%
AAGATGCAGAAGGCCGCAAA+AGG + chr5_4:60972216-60972235 None:intergenic 50.0%
! CTTTAGAGGGGGAAGAAGAC+AGG + chr5_4:60972334-60972353 None:intergenic 50.0%
!! TTCCCCCTCTAAAGCAATGG+AGG - chr5_4:60972340-60972359 Msa0861610:intron 50.0%
!! TCCCCCTCTAAAGCAATGGA+GGG - chr5_4:60972341-60972360 Msa0861610:intron 50.0%
!! TCCCTCCATTGCTTTAGAGG+GGG + chr5_4:60972345-60972364 None:intergenic 50.0%
!! CTCCCTCCATTGCTTTAGAG+GGG + chr5_4:60972346-60972365 None:intergenic 50.0%
GGGTCATGTGATCTGGTACA+TGG + chr5_4:60972539-60972558 None:intergenic 50.0%
! CCCTGAACCTGACCTTTTAC+TGG - chr5_4:60972820-60972839 Msa0861610:intron 50.0%
GCTCTGCGTTAGGCTTATTG+TGG - chr5_4:60973047-60973066 Msa0861610:intron 50.0%
GCAACTAGCAACCTCGTTAC+AGG + chr5_4:60973209-60973228 None:intergenic 50.0%
!! GGTTTGCTGCATCAGCAACA+TGG + chr5_4:60973242-60973261 None:intergenic 50.0%
TGAACCTCCACGCATTGCAT+AGG - chr5_4:60973269-60973288 Msa0861610:CDS 50.0%
GAAACCTATGCAATGCGTGG+AGG + chr5_4:60973276-60973295 None:intergenic 50.0%
GGGTCGTCTGTCAACAAAGT+AGG + chr5_4:60973616-60973635 None:intergenic 50.0%
ACTGTGCAAGCACAAAGCGT+AGG - chr5_4:60973806-60973825 Msa0861610:intron 50.0%
AACACTGAGGAGGCTAGTGA+GGG + chr5_4:60973960-60973979 None:intergenic 50.0%
CTCAAACAGCAACACTGAGG+AGG + chr5_4:60973970-60973989 None:intergenic 50.0%
CTTGAGGTAAGAGGAAGGGG+CGG - chr5_4:60971762-60971781 Msa0861610:three_prime_UTR 55.0%
TTGAGGTAAGAGGAAGGGGC+GGG - chr5_4:60971763-60971782 Msa0861610:three_prime_UTR 55.0%
AGAGCTGCAGCCACAACTAG+CGG + chr5_4:60971878-60971897 None:intergenic 55.0%
!!! GGTTTTGGGTGGGAGAGACT+TGG - chr5_4:60971922-60971941 Msa0861610:three_prime_UTR 55.0%
GGTGTTTGAACGGTCTTGGC+TGG - chr5_4:60971943-60971962 Msa0861610:three_prime_UTR 55.0%
TGCAGTGCCTGATTCAAGCG+AGG + chr5_4:60972678-60972697 None:intergenic 55.0%
! GGACCTGTGAGGTGTCATCT+TGG - chr5_4:60972848-60972867 Msa0861610:intron 55.0%
CTGCATCAGCAACATGGCTG+TGG + chr5_4:60973236-60973255 None:intergenic 55.0%
CAACACTGAGGAGGCTAGTG+AGG + chr5_4:60973961-60973980 None:intergenic 55.0%
CTTGAGGTAAGAGGAAGGGG+CGG - chr5_4:60971762-60971781 Msa0861610:three_prime_UTR 55.0%
TTGAGGTAAGAGGAAGGGGC+GGG - chr5_4:60971763-60971782 Msa0861610:three_prime_UTR 55.0%
AGAGCTGCAGCCACAACTAG+CGG + chr5_4:60971878-60971897 None:intergenic 55.0%
!!! GGTTTTGGGTGGGAGAGACT+TGG - chr5_4:60971922-60971941 Msa0861610:three_prime_UTR 55.0%
GGTGTTTGAACGGTCTTGGC+TGG - chr5_4:60971943-60971962 Msa0861610:three_prime_UTR 55.0%
TGCAGTGCCTGATTCAAGCG+AGG + chr5_4:60972678-60972697 None:intergenic 55.0%
! GGACCTGTGAGGTGTCATCT+TGG - chr5_4:60972848-60972867 Msa0861610:intron 55.0%
CTGCATCAGCAACATGGCTG+TGG + chr5_4:60973236-60973255 None:intergenic 55.0%
CAACACTGAGGAGGCTAGTG+AGG + chr5_4:60973961-60973980 None:intergenic 55.0%
TGCGTGAGGTGCAGGATCTG+CGG - chr5_4:60971796-60971815 Msa0861610:three_prime_UTR 60.0%
TGCAGGATCTGCGGGTGACT+GGG - chr5_4:60971805-60971824 Msa0861610:three_prime_UTR 60.0%
TAGTCTGGGCAACAGCTCGC+TGG - chr5_4:60971833-60971852 Msa0861610:three_prime_UTR 60.0%
AGTCTGGGCAACAGCTCGCT+GGG - chr5_4:60971834-60971853 Msa0861610:three_prime_UTR 60.0%
!!! CGCGGGATGTGGTTTTGGGT+GGG - chr5_4:60971912-60971931 Msa0861610:three_prime_UTR 60.0%
CGGCCTTCTGCATCTTGTGC+AGG - chr5_4:60972220-60972239 Msa0861610:intron 60.0%
TGTGGATGGGAAGGAAGCGG+TGG - chr5_4:60972575-60972594 Msa0861610:intron 60.0%
TGCGTGAGGTGCAGGATCTG+CGG - chr5_4:60971796-60971815 Msa0861610:three_prime_UTR 60.0%
TGCAGGATCTGCGGGTGACT+GGG - chr5_4:60971805-60971824 Msa0861610:three_prime_UTR 60.0%
TAGTCTGGGCAACAGCTCGC+TGG - chr5_4:60971833-60971852 Msa0861610:three_prime_UTR 60.0%
AGTCTGGGCAACAGCTCGCT+GGG - chr5_4:60971834-60971853 Msa0861610:three_prime_UTR 60.0%
!!! CGCGGGATGTGGTTTTGGGT+GGG - chr5_4:60971912-60971931 Msa0861610:three_prime_UTR 60.0%
CGGCCTTCTGCATCTTGTGC+AGG - chr5_4:60972220-60972239 Msa0861610:intron 60.0%
TGTGGATGGGAAGGAAGCGG+TGG - chr5_4:60972575-60972594 Msa0861610:intron 60.0%
GTAAGAGGAAGGGGCGGGAC+TGG - chr5_4:60971768-60971787 Msa0861610:three_prime_UTR 65.0%
GCGTGAGGTGCAGGATCTGC+GGG - chr5_4:60971797-60971816 Msa0861610:three_prime_UTR 65.0%
GTGCAGGATCTGCGGGTGAC+TGG - chr5_4:60971804-60971823 Msa0861610:three_prime_UTR 65.0%
TCGCCTGTCGCCGCTAGTTG+TGG - chr5_4:60971865-60971884 Msa0861610:three_prime_UTR 65.0%
CAGCCACAACTAGCGGCGAC+AGG + chr5_4:60971871-60971890 None:intergenic 65.0%
GTGGCTGCAGCTCTGTGCTC+CGG - chr5_4:60971884-60971903 Msa0861610:three_prime_UTR 65.0%
! GCGGCGCGGGATGTGGTTTT+GGG - chr5_4:60971908-60971927 Msa0861610:three_prime_UTR 65.0%
!!! GCGCGGGATGTGGTTTTGGG+TGG - chr5_4:60971911-60971930 Msa0861610:three_prime_UTR 65.0%
GTAAGAGGAAGGGGCGGGAC+TGG - chr5_4:60971768-60971787 Msa0861610:three_prime_UTR 65.0%
GCGTGAGGTGCAGGATCTGC+GGG - chr5_4:60971797-60971816 Msa0861610:three_prime_UTR 65.0%
GTGCAGGATCTGCGGGTGAC+TGG - chr5_4:60971804-60971823 Msa0861610:three_prime_UTR 65.0%
TCGCCTGTCGCCGCTAGTTG+TGG - chr5_4:60971865-60971884 Msa0861610:three_prime_UTR 65.0%
CAGCCACAACTAGCGGCGAC+AGG + chr5_4:60971871-60971890 None:intergenic 65.0%
GTGGCTGCAGCTCTGTGCTC+CGG - chr5_4:60971884-60971903 Msa0861610:three_prime_UTR 65.0%
! GCGGCGCGGGATGTGGTTTT+GGG - chr5_4:60971908-60971927 Msa0861610:three_prime_UTR 65.0%
!!! GCGCGGGATGTGGTTTTGGG+TGG - chr5_4:60971911-60971930 Msa0861610:three_prime_UTR 65.0%
AGAGGAAGGGGCGGGACTGG+CGG - chr5_4:60971771-60971790 Msa0861610:three_prime_UTR 70.0%
!! TGGCGGGTTGCGTGAGGTGC+AGG - chr5_4:60971788-60971807 Msa0861610:three_prime_UTR 70.0%
TGCAGCTCTGTGCTCCGGCG+CGG - chr5_4:60971889-60971908 Msa0861610:three_prime_UTR 70.0%
! CGCGGCGCGGGATGTGGTTT+TGG - chr5_4:60971907-60971926 Msa0861610:three_prime_UTR 70.0%
AGAGGAAGGGGCGGGACTGG+CGG - chr5_4:60971771-60971790 Msa0861610:three_prime_UTR 70.0%
!! TGGCGGGTTGCGTGAGGTGC+AGG - chr5_4:60971788-60971807 Msa0861610:three_prime_UTR 70.0%
TGCAGCTCTGTGCTCCGGCG+CGG - chr5_4:60971889-60971908 Msa0861610:three_prime_UTR 70.0%
! CGCGGCGCGGGATGTGGTTT+TGG - chr5_4:60971907-60971926 Msa0861610:three_prime_UTR 70.0%
! GAGGAAGGGGCGGGACTGGC+GGG - chr5_4:60971772-60971791 Msa0861610:three_prime_UTR 75.0%
!! CGGGACTGGCGGGTTGCGTG+AGG - chr5_4:60971782-60971801 Msa0861610:three_prime_UTR 75.0%
AACCACATCCCGCGCCGCGC+CGG + chr5_4:60971906-60971925 None:intergenic 75.0%
! GAGGAAGGGGCGGGACTGGC+GGG - chr5_4:60971772-60971791 Msa0861610:three_prime_UTR 75.0%
!! CGGGACTGGCGGGTTGCGTG+AGG - chr5_4:60971782-60971801 Msa0861610:three_prime_UTR 75.0%
AACCACATCCCGCGCCGCGC+CGG + chr5_4:60971906-60971925 None:intergenic 75.0%
! CTCTGTGCTCCGGCGCGGCG+CGG - chr5_4:60971894-60971913 Msa0861610:three_prime_UTR 80.0%
! TCTGTGCTCCGGCGCGGCGC+GGG - chr5_4:60971895-60971914 Msa0861610:three_prime_UTR 80.0%
! CTCTGTGCTCCGGCGCGGCG+CGG - chr5_4:60971894-60971913 Msa0861610:three_prime_UTR 80.0%
! TCTGTGCTCCGGCGCGGCGC+GGG - chr5_4:60971895-60971914 Msa0861610:three_prime_UTR 80.0%
! CTCCGGCGCGGCGCGGGATG+TGG - chr5_4:60971901-60971920 Msa0861610:three_prime_UTR 85.0%
! CTCCGGCGCGGCGCGGGATG+TGG - chr5_4:60971901-60971920 Msa0861610:three_prime_UTR 85.0%
Chromosome Type Strat End Strand Name
chr5_4 gene 60971735 60974098 60971735 ID=Msa0861610;Name=Msa0861610
chr5_4 mRNA 60971735 60974098 60971735 ID=Msa0861610-mRNA-1;Parent=Msa0861610;Name=Msa0861610-mRNA-1;_AED=0.10;_eAED=0.10;_QI=0|0.75|0.6|0.8|0.5|0.4|5|320|207
chr5_4 exon 60971735 60972062 60971735 ID=Msa0861610-mRNA-1:exon:18879;Parent=Msa0861610-mRNA-1
chr5_4 exon 60972365 60972447 60972365 ID=Msa0861610-mRNA-1:exon:18878;Parent=Msa0861610-mRNA-1
chr5_4 exon 60972927 60973023 60972927 ID=Msa0861610-mRNA-1:exon:18877;Parent=Msa0861610-mRNA-1
chr5_4 exon 60973128 60973479 60973128 ID=Msa0861610-mRNA-1:exon:18876;Parent=Msa0861610-mRNA-1
chr5_4 exon 60974015 60974098 60974015 ID=Msa0861610-mRNA-1:exon:18875;Parent=Msa0861610-mRNA-1
chr5_4 CDS 60974015 60974098 60974015 ID=Msa0861610-mRNA-1:cds;Parent=Msa0861610-mRNA-1
chr5_4 CDS 60973128 60973479 60973128 ID=Msa0861610-mRNA-1:cds;Parent=Msa0861610-mRNA-1
chr5_4 CDS 60972927 60973023 60972927 ID=Msa0861610-mRNA-1:cds;Parent=Msa0861610-mRNA-1
chr5_4 CDS 60972365 60972447 60972365 ID=Msa0861610-mRNA-1:cds;Parent=Msa0861610-mRNA-1
chr5_4 CDS 60972055 60972062 60972055 ID=Msa0861610-mRNA-1:cds;Parent=Msa0861610-mRNA-1
chr5_4 three_prime_UTR 60971735 60972054 60971735 ID=Msa0861610-mRNA-1:three_prime_utr;Parent=Msa0861610-mRNA-1
Gene Sequence

>Msa0861610

ATGGAGTTGGAATCCGAGAGATCGTCTCTTGAGGTAAGAGGAAGGGGCGGGACTGGCGGGTTGCGTGAGGTGCAGGATCTGCGGCAATGGAGGGAGAAATACCATTATTATTCTCTTTTGCTCTATTTCCATTTTTTCTATGCATCCATACGACTCATTAATATAAAATTAAATGGCTCATTCGACTGTAACTTCAACTGTTTTTTCATTCGTTTGATCAGATCTAGCTTTAACTCAATGCAGGAAGTTAATAAAGCTGTGACAGACCATGTACCAGATCACATGACCCTAGAATTTGTTTCTTATGTGGATGGGAAGGAAGCGGTGGCCAAAGCAGCTAACATGATTTTTGTTGAGAGTTCGAAACGACATAACTTAGATGGAGAACTTGATTATCAATTAGAGCCTCGCTTGAATCAGGCACTGCAAATAGTTGGTTGCAAAGGCCCTGAACCTGACCTTTTACTGGTTTATGGACCTGTGAGGTGTCATCTTGGTTTTCCTGCATGGAGAATTCGGTATACAGAGATAGTGCATATGGGGTCGTTGAACTTCATGAGATACGGTTCTTTAATAAAAGCCATTTACAACTTTACAAAGGTGCACCAAAATTATGGTACATAG
Protein sequence

>Msa0861610

MELESERSSLEVRGRGGTGGLREVQDLRQWREKYHYYSLLLYFHFFYASIRLINIKLNGSFDCNFNCFFIRLIRSSFNSMQEVNKAVTDHVPDHMTLEFVSYVDGKEAVAKAANMIFVESSKRHNLDGELDYQLEPRLNQALQIVGCKGPEPDLLLVYGPVRCHLGFPAWRIRYTEIVHMGSLNFMRYGSLIKAIYNFTKVHQNYGT*