AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0616160


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0616160 MtrunA17_Chr8g0375271 95.405 370 10 1 1 370 1 363 0.0 715
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0616160 AT2G36740.1 59.091 352 128 4 14 358 9 351 2.03e-127 370
Msa0616160 AT2G36740.2 62.706 303 104 3 10 305 5 305 5.56e-117 342

Find 91 sgRNAs with CRISPR-Local

Find 339 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTCATCATTATCATCAATTT+TGG 0.077559 4_2:+65859872 None:intergenic
GAAGAAAATCTTATCTAATT+TGG 0.115613 4_2:-65859904 Msa0616160:CDS
GGCTTATATGATTCAGTTTC+TGG 0.127458 4_2:-65856178 Msa0616160:CDS
ATAAAGTCCTATCATATATT+TGG 0.162929 4_2:-65855557 Msa0616160:three_prime_UTR
AATTATGAACTTGAGGAATT+TGG 0.176156 4_2:-65858897 Msa0616160:CDS
GACTTTATGATAGGACTTTA+TGG 0.180863 4_2:+65855572 None:intergenic
TCGCCTTTCTTCCTTATTAC+TGG 0.196750 4_2:+65859080 None:intergenic
TATGATTCAGTTTCTGGATA+TGG 0.207235 4_2:-65856172 Msa0616160:CDS
GTGCATAAAACTGTCTTTAA+TGG 0.216607 4_2:-65858830 Msa0616160:CDS
CCGCGATTTCAGCTTCTTCT+TGG 0.241131 4_2:+65860155 None:intergenic
CAATGGCTTCTTTCATGATT+TGG 0.245034 4_2:+65855944 None:intergenic
TTCAACAAGATGAATTGTTC+TGG 0.284399 4_2:-65860219 Msa0616160:CDS
CAACCTGTTTGCGTTATTAC+TGG 0.293930 4_2:-65857326 Msa0616160:CDS
CTCTAGAAAAGAAACGAATA+TGG 0.304931 4_2:-65856203 Msa0616160:CDS
TTAACTTCAAATCTTTCTTA+AGG 0.305053 4_2:-65855491 Msa0616160:three_prime_UTR
GGCTGTTCTTCATCGGGTTC+AGG 0.307025 4_2:+65860008 None:intergenic
TAACTTCAAATCTTTCTTAA+GGG 0.318251 4_2:-65855490 Msa0616160:three_prime_UTR
CAAACCTTGCGCTGAAGTAT+TGG 0.360200 4_2:-65855766 Msa0616160:three_prime_UTR
GCGAACAATGACGGAAGTTC+TGG 0.369171 4_2:+65859776 None:intergenic
ACAATGGAGGAAAAGAATTC+AGG 0.384881 4_2:-65860331 Msa0616160:CDS
ATAACGCAAACAGGTTGTTC+TGG 0.392827 4_2:+65857332 None:intergenic
CGTATTTGGAGTTTACTAAA+GGG 0.400482 4_2:-65858688 Msa0616160:CDS
GCGTATGGCAGCCCAGTCTT+TGG 0.402777 4_2:+65857115 None:intergenic
GATATTGGAGATAACCTTGT+AGG 0.403997 4_2:+65859713 None:intergenic
TAAAGTCCTATCATATATTT+GGG 0.405315 4_2:-65855556 Msa0616160:three_prime_UTR
ATGCGAAGGAGGTAATGATT+AGG 0.411108 4_2:-65859806 Msa0616160:CDS
AGATGAATTGTTCTGGGGTC+AGG 0.416421 4_2:-65860212 Msa0616160:CDS
ATACACTACATATCACAAAA+TGG 0.416807 4_2:-65858800 Msa0616160:intron
TAGATATCTAATGATGAGAT+TGG 0.421068 4_2:-65855654 Msa0616160:three_prime_UTR
AAGAAGCGATTGATATATCC+TGG 0.422336 4_2:-65859957 Msa0616160:CDS
CTTTGACCCAAATATATGAT+AGG 0.426088 4_2:+65855550 None:intergenic
TGCTGTGCTTCATCACGATT+CGG 0.433659 4_2:-65855923 Msa0616160:three_prime_UTR
TCAACAAGATGAATTGTTCT+GGG 0.454323 4_2:-65860218 Msa0616160:CDS
ATCTTGTCTCGGGTATTGTA+TGG 0.456155 4_2:+65855362 None:intergenic
TAGAGAATAGTTTGATAATG+AGG 0.464509 4_2:+65855433 None:intergenic
ATATGATAGGACTTTATGAT+AGG 0.464623 4_2:+65855563 None:intergenic
TTAGCCAATGTCGTCTTCCC+AGG 0.468618 4_2:+65859939 None:intergenic
TTCATCACGATTCGGACCTC+AGG 0.470395 4_2:-65855915 Msa0616160:intron
TCGTATTTGGAGTTTACTAA+AGG 0.472369 4_2:-65858689 Msa0616160:CDS
CCTCCTTCGCATCATCGTCC+TGG 0.473697 4_2:+65859817 None:intergenic
CACATGATCGGTCCTTGGCT+CGG 0.478772 4_2:-65856099 Msa0616160:CDS
GAATGGCTTCTCTTTCAGCT+TGG 0.491571 4_2:+65859754 None:intergenic
AGTTACGTCTTGATCGAAAT+CGG 0.494921 4_2:+65860120 None:intergenic
GAGATCGAATCTTCTACTGC+TGG 0.496740 4_2:-65860299 Msa0616160:CDS
AAACCAGTAATAACGCAAAC+AGG 0.498211 4_2:+65857323 None:intergenic
AAGAAAGGCTCTTACTTGGC+AGG 0.501328 4_2:+65857299 None:intergenic
ATATATTAGAATCTTGTCTC+GGG 0.515538 4_2:+65855352 None:intergenic
TTCAGCTTGGCGAACAATGA+CGG 0.524822 4_2:+65859767 None:intergenic
CTATCATATATTTGGGTCAA+AGG 0.524873 4_2:-65855549 Msa0616160:three_prime_UTR
ACATCCACATGATCGGTCCT+TGG 0.525200 4_2:-65856104 Msa0616160:CDS
AGGTACCGTGATCCAAAGAC+TGG 0.525622 4_2:-65857127 Msa0616160:CDS
GAATCTTCATCCTCAAAAGT+AGG 0.528439 4_2:+65856064 None:intergenic
CTGCAGAAATTATGAACTTG+AGG 0.529753 4_2:-65858904 Msa0616160:intron
TGCTTTGAGAGCTTCGCGAA+TGG 0.533499 4_2:+65859737 None:intergenic
AATATATTAGAATCTTGTCT+CGG 0.537809 4_2:+65855351 None:intergenic
GGATACGGTATAACAACGAT+TGG 0.541068 4_2:-65855633 Msa0616160:three_prime_UTR
TCTAGAAAAGAAACGAATAT+GGG 0.542033 4_2:-65856202 Msa0616160:CDS
TCTAATGATGAGATTGGATA+CGG 0.555098 4_2:-65855648 Msa0616160:three_prime_UTR
AAAATATACATCCACATGAT+CGG 0.556585 4_2:-65856111 Msa0616160:CDS
AAAATTGATGATAATGATGA+CGG 0.559093 4_2:-65859870 Msa0616160:CDS
AAGTTTACTTGCAATCAAGA+AGG 0.566909 4_2:+65857053 None:intergenic
TATTCCAATACTTCAGCGCA+AGG 0.570870 4_2:+65855762 None:intergenic
CAGCCAGTAATAAGGAAGAA+AGG 0.573774 4_2:-65859083 Msa0616160:CDS
AGCTCTCAAAGCAACCTACA+AGG 0.574053 4_2:-65859727 Msa0616160:intron
CGTGCATCTCGAGCGACAAG+AGG 0.584790 4_2:-65860274 Msa0616160:CDS
AGTTTGATAATGAGGAAATG+AGG 0.588073 4_2:+65855441 None:intergenic
TTTCAATCTATACAACTCCA+TGG 0.588853 4_2:+65855711 None:intergenic
GTATTTGGAGTTTACTAAAG+GGG 0.598121 4_2:-65858687 Msa0616160:CDS
ATCGTGATGAAGCACAGCAA+TGG 0.601389 4_2:+65855927 None:intergenic
CGCACATTCTTGAGACGTTG+TGG 0.601571 4_2:+65858643 None:intergenic
CGAGCCAAGGACCGATCATG+TGG 0.604117 4_2:+65856100 None:intergenic
AAGTGTTAACACTGAACAGA+AGG 0.605319 4_2:-65860377 None:intergenic
GGAGAAGAAAATGTCACAAG+AGG 0.609231 4_2:-65859057 Msa0616160:CDS
TGTGATATGTAGTGTATCTG+TGG 0.609479 4_2:+65858806 None:intergenic
GCAGCCCAGTCTTTGGATCA+CGG 0.611548 4_2:+65857122 None:intergenic
AGAAGCGATTGATATATCCT+GGG 0.612387 4_2:-65859956 Msa0616160:CDS
CAACCAGGACGATGATGCGA+AGG 0.612565 4_2:-65859820 Msa0616160:CDS
AAACAACAAGAACAACAACC+AGG 0.612812 4_2:-65859835 Msa0616160:CDS
ATATCCTGGGAAGACGACAT+TGG 0.615449 4_2:-65859943 Msa0616160:CDS
CCAGGACGATGATGCGAAGG+AGG 0.615528 4_2:-65859817 Msa0616160:CDS
AAGATTCTGACTAACTGCCT+TGG 0.625749 4_2:-65856048 Msa0616160:intron
AGAAAAGAAACGAATATGGG+AGG 0.647868 4_2:-65856199 Msa0616160:CDS
CGAGCGAGTTAGTACAATGG+AGG 0.651028 4_2:-65860344 Msa0616160:exon
GTGCGAGCGAGTTAGTACAA+TGG 0.652562 4_2:-65860347 Msa0616160:exon
AATTCTACGAAACCGAGCCA+AGG 0.655235 4_2:+65856087 None:intergenic
CAACAAGATGAATTGTTCTG+GGG 0.658361 4_2:-65860217 Msa0616160:CDS
GTATAGATTGAAACAAGGAG+TGG 0.663508 4_2:-65855701 Msa0616160:three_prime_UTR
CCAAGAAGAAGCTGAAATCG+CGG 0.669602 4_2:-65860155 Msa0616160:CDS
AGTAATAAGGAAGAAAGGCG+AGG 0.677909 4_2:-65859078 Msa0616160:CDS
GGTACCGTGATCCAAAGACT+GGG 0.697285 4_2:-65857126 Msa0616160:CDS
GAGTTGTATAGATTGAAACA+AGG 0.708355 4_2:-65855706 Msa0616160:three_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTAATCTATTGTTGTTATA+AGG + chr4_2:65856246-65856265 None:intergenic 15.0%
!!! CTAACTAATTTTTGTAAATT+CGG + chr4_2:65857436-65857455 None:intergenic 15.0%
!! TTCAATACAAAAAAAATTGA+CGG - chr4_2:65858027-65858046 Msa0616160:intron 15.0%
!!! GTTTATTTAGTTTAAAGTTA+GGG - chr4_2:65858049-65858068 Msa0616160:intron 15.0%
!! TACTGTTATAAAAGAATATT+AGG + chr4_2:65858708-65858727 None:intergenic 15.0%
!!! ATCATAAAAAGTTATCTTTT+TGG + chr4_2:65858776-65858795 None:intergenic 15.0%
!! TTATAAGAACAATTATAACT+AGG + chr4_2:65859222-65859241 None:intergenic 15.0%
!! ATATCGAAAAATTAAATTTC+AGG - chr4_2:65859241-65859260 Msa0616160:intron 15.0%
!! TATAAAAGAAGACTAAAAAT+AGG + chr4_2:65859704-65859723 None:intergenic 15.0%
!! GAAGAAAATCTTATCTAATT+TGG - chr4_2:65855807-65855826 Msa0616160:intron 20.0%
!!! TCATCATTATCATCAATTTT+GGG + chr4_2:65855841-65855860 None:intergenic 20.0%
!!! AAAATTGATGATAATGATGA+CGG - chr4_2:65855841-65855860 Msa0616160:intron 20.0%
!! TTATTTCAATAATCTTTCTG+GGG + chr4_2:65856317-65856336 None:intergenic 20.0%
!! CTTATTTCAATAATCTTTCT+GGG + chr4_2:65856318-65856337 None:intergenic 20.0%
!! AACTTAAATGCTTATCATAT+AGG + chr4_2:65856523-65856542 None:intergenic 20.0%
!! AATATAGTGCTAGAATAAAA+GGG + chr4_2:65857095-65857114 None:intergenic 20.0%
!! AAATATAGTGCTAGAATAAA+AGG + chr4_2:65857096-65857115 None:intergenic 20.0%
!!! TTTATTCTAGCACTATATTT+TGG - chr4_2:65857096-65857115 Msa0616160:CDS 20.0%
!!! ATTAGTTTATAGACAATAAC+TGG - chr4_2:65857251-65857270 Msa0616160:intron 20.0%
!!! ATTTTTGTAAATTCGGTATT+TGG + chr4_2:65857429-65857448 None:intergenic 20.0%
!! CGAATTTACAAAAATTAGTT+AGG - chr4_2:65857434-65857453 Msa0616160:intron 20.0%
!! TACAAAAATTAGTTAGGTTT+AGG - chr4_2:65857440-65857459 Msa0616160:intron 20.0%
!!! ACTAAGTGTTTTAGATAATT+AGG - chr4_2:65857720-65857739 Msa0616160:intron 20.0%
!!! CTAAGTGTTTTAGATAATTA+GGG - chr4_2:65857721-65857740 Msa0616160:intron 20.0%
!!! GTAAAACTTTTTCTACTTAA+AGG + chr4_2:65857840-65857859 None:intergenic 20.0%
!!! GAATTTGTTAGAGAAAAAAT+TGG - chr4_2:65857998-65858017 Msa0616160:intron 20.0%
!!! GGTTTATTTAGTTTAAAGTT+AGG - chr4_2:65858048-65858067 Msa0616160:intron 20.0%
!!! CTTTTAAAATAATTCGACAA+CGG - chr4_2:65858630-65858649 Msa0616160:intron 20.0%
!! TTAGTAATTCAATAACATCA+TGG + chr4_2:65858893-65858912 None:intergenic 20.0%
!!! TAAATATAAAAGCATTCATG+TGG - chr4_2:65859339-65859358 Msa0616160:intron 20.0%
!!! AAATATAAAAGCATTCATGT+GGG - chr4_2:65859340-65859359 Msa0616160:intron 20.0%
!!! TGCTTGTAATTGATTTTAAT+TGG - chr4_2:65859450-65859469 Msa0616160:intron 20.0%
!!! GCTTGTAATTGATTTTAATT+GGG - chr4_2:65859451-65859470 Msa0616160:intron 20.0%
!!! CTTGTAATTGATTTTAATTG+GGG - chr4_2:65859452-65859471 Msa0616160:intron 20.0%
!! ATAAAGTCCTATCATATATT+TGG - chr4_2:65860154-65860173 Msa0616160:CDS 20.0%
!! TAAAGTCCTATCATATATTT+GGG - chr4_2:65860155-65860174 Msa0616160:CDS 20.0%
!! TTAACTTCAAATCTTTCTTA+AGG - chr4_2:65860220-65860239 Msa0616160:CDS 20.0%
!! TAACTTCAAATCTTTCTTAA+GGG - chr4_2:65860221-65860240 Msa0616160:CDS 20.0%
!! AATATATTAGAATCTTGTCT+CGG + chr4_2:65860363-65860382 None:intergenic 20.0%
!! TAATTCTTCTTGATTTTCTC+AGG - chr4_2:65855678-65855697 Msa0616160:three_prime_UTR 25.0%
!! GTCATCATTATCATCAATTT+TGG + chr4_2:65855842-65855861 None:intergenic 25.0%
! TGAATCACAGAAAAAGATAT+TGG + chr4_2:65856016-65856035 None:intergenic 25.0%
!! ATCTTTTTCTGTGATTCATT+AGG - chr4_2:65856018-65856037 Msa0616160:intron 25.0%
!! TCTTTTTCTGTGATTCATTA+GGG - chr4_2:65856019-65856038 Msa0616160:intron 25.0%
! GCTTATTTCAATAATCTTTC+TGG + chr4_2:65856319-65856338 None:intergenic 25.0%
! AATAAGCTTATAACAGCTTA+TGG - chr4_2:65856332-65856351 Msa0616160:intron 25.0%
! TACATAGATTCTGTTAAGAT+TGG + chr4_2:65856422-65856441 None:intergenic 25.0%
! CTTAACAGAATCTATGTAAA+TGG - chr4_2:65856424-65856443 Msa0616160:intron 25.0%
! AAGCATAATTGAAACATCAA+AGG + chr4_2:65856781-65856800 None:intergenic 25.0%
!! TGATGTTTCAATTATGCTTT+TGG - chr4_2:65856782-65856801 Msa0616160:intron 25.0%
! AATTATGAACTTGAGGAATT+TGG - chr4_2:65856814-65856833 Msa0616160:intron 25.0%
! ATACACTACATATCACAAAA+TGG - chr4_2:65856911-65856930 Msa0616160:intron 25.0%
! ACAGATTGCTATATGTAAAA+TGG + chr4_2:65856985-65857004 None:intergenic 25.0%
!!! AGCAATCTGTTTATTTTTTC+AGG - chr4_2:65856995-65857014 Msa0616160:intron 25.0%
! ATGTAATATATTCCGTTTCT+TGG - chr4_2:65857138-65857157 Msa0616160:intron 25.0%
! AATGACGAAACAATTTCTTT+GGG + chr4_2:65857195-65857214 None:intergenic 25.0%
! AAATTAGTTAGGTTTAGGAA+AGG - chr4_2:65857445-65857464 Msa0616160:intron 25.0%
! ATGTATAGTAAACAATGAGT+AGG - chr4_2:65857483-65857502 Msa0616160:intron 25.0%
!! TATCTAAAACACTTAGTTGT+GGG + chr4_2:65857717-65857736 None:intergenic 25.0%
!! TTATCTAAAACACTTAGTTG+TGG + chr4_2:65857718-65857737 None:intergenic 25.0%
! TAAGATTTGCAACTATGTAT+GGG - chr4_2:65857870-65857889 Msa0616160:intron 25.0%
! AAAAAAAAAAGTAGTTCAGC+CGG - chr4_2:65858498-65858517 Msa0616160:intron 25.0%
!!! TTTTTTTTTTCCTTCTGCAA+TGG - chr4_2:65858819-65858838 Msa0616160:CDS 25.0%
! TAATTCAATAACATCATGGT+GGG + chr4_2:65858889-65858908 None:intergenic 25.0%
! AGGATTAAACACAATTTCAT+GGG + chr4_2:65859202-65859221 None:intergenic 25.0%
! TAGGATTAAACACAATTTCA+TGG + chr4_2:65859203-65859222 None:intergenic 25.0%
! TCTAGAAAAGAAACGAATAT+GGG - chr4_2:65859509-65859528 Msa0616160:intron 25.0%
! AAAATATACATCCACATGAT+CGG - chr4_2:65859600-65859619 Msa0616160:intron 25.0%
! AAAAGAAGACTAAAAATAGG+AGG + chr4_2:65859701-65859720 None:intergenic 25.0%
! TAGATATCTAATGATGAGAT+TGG - chr4_2:65860057-65860076 Msa0616160:intron 25.0%
! ATATGATAGGACTTTATGAT+AGG + chr4_2:65860151-65860170 None:intergenic 25.0%
!! GTTTGACTAATAGTTTTCTT+TGG - chr4_2:65860243-65860262 Msa0616160:CDS 25.0%
!!! TAGAGAATAGTTTGATAATG+AGG + chr4_2:65860281-65860300 None:intergenic 25.0%
! ATATATTAGAATCTTGTCTC+GGG + chr4_2:65860362-65860381 None:intergenic 25.0%
TTCAACAAGATGAATTGTTC+TGG - chr4_2:65855492-65855511 Msa0616160:three_prime_UTR 30.0%
TCAACAAGATGAATTGTTCT+GGG - chr4_2:65855493-65855512 Msa0616160:three_prime_UTR 30.0%
! ATTCTTTCATCATCGTTTTG+TGG + chr4_2:65855727-65855746 None:intergenic 30.0%
! TCATTATCATCAATTTTGGG+AGG + chr4_2:65855838-65855857 None:intergenic 30.0%
CTATCTTGAAAAACAGCTTA+TGG + chr4_2:65856187-65856206 None:intergenic 30.0%
! AACATTTTCAGACCATAATC+AGG + chr4_2:65856588-65856607 None:intergenic 30.0%
GGTCAATATTAGAATACACT+TGG - chr4_2:65856703-65856722 Msa0616160:intron 30.0%
GAAAACTAAAACAAACAAGC+AGG + chr4_2:65856751-65856770 None:intergenic 30.0%
GTGCATAAAACTGTCTTTAA+TGG - chr4_2:65856881-65856900 Msa0616160:intron 30.0%
ACTACATATCACAAAATGGT+TGG - chr4_2:65856915-65856934 Msa0616160:intron 30.0%
!! TGCATTTAGTTTGGTTGTAT+TGG - chr4_2:65856953-65856972 Msa0616160:intron 30.0%
!!! TTTTTCAGGTTGTTCGTATT+TGG - chr4_2:65857009-65857028 Msa0616160:intron 30.0%
! TCGTATTTGGAGTTTACTAA+AGG - chr4_2:65857022-65857041 Msa0616160:intron 30.0%
! CGTATTTGGAGTTTACTAAA+GGG - chr4_2:65857023-65857042 Msa0616160:intron 30.0%
! GTATTTGGAGTTTACTAAAG+GGG - chr4_2:65857024-65857043 Msa0616160:intron 30.0%
GAACTTTATGAACCAAGAAA+CGG + chr4_2:65857153-65857172 None:intergenic 30.0%
CAATGACGAAACAATTTCTT+TGG + chr4_2:65857196-65857215 None:intergenic 30.0%
CAAAGAAATTGTTTCGTCAT+TGG - chr4_2:65857194-65857213 Msa0616160:intron 30.0%
TAGACAATAACTGGAATAAC+TGG - chr4_2:65857260-65857279 Msa0616160:intron 30.0%
! TTCAGATGGTATCATTTTAC+TGG - chr4_2:65857320-65857339 Msa0616160:CDS 30.0%
TGACATTATAACAAGTGCTA+AGG - chr4_2:65857353-65857372 Msa0616160:intron 30.0%
! GCAGTTGAACATAAATGTTT+TGG - chr4_2:65857377-65857396 Msa0616160:intron 30.0%
!!! ATAAATGTTTTGGAGACCAA+GGG - chr4_2:65857387-65857406 Msa0616160:intron 30.0%
ATAGTAAACAATGAGTAGGA+AGG - chr4_2:65857487-65857506 Msa0616160:intron 30.0%
ACATAGTTGCAAATCTTACT+AGG + chr4_2:65857868-65857887 None:intergenic 30.0%
GTAAGATTTGCAACTATGTA+TGG - chr4_2:65857869-65857888 Msa0616160:intron 30.0%
!! ATGTTGGTAACTCTTACAAA+TGG - chr4_2:65858155-65858174 Msa0616160:intron 30.0%
!! TGTTGGTAACTCTTACAAAT+GGG - chr4_2:65858156-65858175 Msa0616160:intron 30.0%
! TGAGAAGAATTTAAAGTACC+CGG - chr4_2:65858222-65858241 Msa0616160:intron 30.0%
TCACATCAATACATCAAGAA+AGG + chr4_2:65858430-65858449 None:intergenic 30.0%
TTATAATCCAACTGAACTAC+TGG + chr4_2:65858470-65858489 None:intergenic 30.0%
! TAACAATATTTGAGGTACAG+TGG + chr4_2:65858545-65858564 None:intergenic 30.0%
CTGTACCTCAAATATTGTTA+AGG - chr4_2:65858545-65858564 Msa0616160:intron 30.0%
GAACTCCTTAACAATATTTG+AGG + chr4_2:65858553-65858572 None:intergenic 30.0%
AAGTTTACTTGCAATCAAGA+AGG + chr4_2:65858661-65858680 None:intergenic 30.0%
GTTAATGTGATTCACTTCAT+AGG - chr4_2:65858729-65858748 Msa0616160:intron 30.0%
AATTCAATAACATCATGGTG+GGG + chr4_2:65858888-65858907 None:intergenic 30.0%
GTAATTCAATAACATCATGG+TGG + chr4_2:65858890-65858909 None:intergenic 30.0%
TATTGTTGGATAGCTAATGA+TGG - chr4_2:65859084-65859103 Msa0616160:intron 30.0%
ATTGTTGGATAGCTAATGAT+GGG - chr4_2:65859085-65859104 Msa0616160:intron 30.0%
TCTGAAAAGCTAGAGAAATT+GGG + chr4_2:65859143-65859162 None:intergenic 30.0%
TGGTTAATGATAGTAGGATT+AGG - chr4_2:65859366-65859385 Msa0616160:intron 30.0%
! CTCTAGAAAAGAAACGAATA+TGG - chr4_2:65859508-65859527 Msa0616160:intron 30.0%
! TATGATTCAGTTTCTGGATA+TGG - chr4_2:65859539-65859558 Msa0616160:intron 30.0%
AATGCATCGTTATTACAAGA+GGG + chr4_2:65859732-65859751 None:intergenic 30.0%
TAATGCATCGTTATTACAAG+AGG + chr4_2:65859733-65859752 None:intergenic 30.0%
TCCTGATAAAAAAATGAGCA+GGG + chr4_2:65859905-65859924 None:intergenic 30.0%
TTTCAATCTATACAACTCCA+TGG + chr4_2:65860003-65860022 None:intergenic 30.0%
GAGTTGTATAGATTGAAACA+AGG - chr4_2:65860005-65860024 Msa0616160:CDS 30.0%
TCTAATGATGAGATTGGATA+CGG - chr4_2:65860063-65860082 Msa0616160:intron 30.0%
! TTGGATACTTTTCTGTTAGA+TGG - chr4_2:65860097-65860116 Msa0616160:intron 30.0%
! TGGATACTTTTCTGTTAGAT+GGG - chr4_2:65860098-65860117 Msa0616160:intron 30.0%
GACTTTATGATAGGACTTTA+TGG + chr4_2:65860142-65860161 None:intergenic 30.0%
CTTTGACCCAAATATATGAT+AGG + chr4_2:65860164-65860183 None:intergenic 30.0%
CTATCATATATTTGGGTCAA+AGG - chr4_2:65860162-65860181 Msa0616160:CDS 30.0%
!! AGTTTGATAATGAGGAAATG+AGG + chr4_2:65860273-65860292 None:intergenic 30.0%
ACAATGGAGGAAAAGAATTC+AGG - chr4_2:65855380-65855399 Msa0616160:three_prime_UTR 35.0%
CAACAAGATGAATTGTTCTG+GGG - chr4_2:65855494-65855513 Msa0616160:three_prime_UTR 35.0%
AGTTACGTCTTGATCGAAAT+CGG + chr4_2:65855594-65855613 None:intergenic 35.0%
! TAATCGGTGTGAATGAGTTT+TGG + chr4_2:65855623-65855642 None:intergenic 35.0%
AAGAAGCGATTGATATATCC+TGG - chr4_2:65855754-65855773 Msa0616160:three_prime_UTR 35.0%
AGAAGCGATTGATATATCCT+GGG - chr4_2:65855755-65855774 Msa0616160:three_prime_UTR 35.0%
AAACAACAAGAACAACAACC+AGG - chr4_2:65855876-65855895 Msa0616160:intron 35.0%
GATATTGGAGATAACCTTGT+AGG + chr4_2:65856001-65856020 None:intergenic 35.0%
TGTATTTGTGCTCATCTAGT+GGG - chr4_2:65856107-65856126 Msa0616160:CDS 35.0%
AGATAGCTTATGCTTCTGTT+TGG - chr4_2:65856201-65856220 Msa0616160:CDS 35.0%
CTTATAACAGCTTATGGACA+TGG - chr4_2:65856338-65856357 Msa0616160:intron 35.0%
GTTCTTCTAAACAATATCCC+AGG - chr4_2:65856366-65856385 Msa0616160:intron 35.0%
! AGCATTTAAGTTAGAAGCAC+TGG - chr4_2:65856531-65856550 Msa0616160:intron 35.0%
TTCCAAACAACACCTGATTA+TGG - chr4_2:65856573-65856592 Msa0616160:intron 35.0%
CTGCAGAAATTATGAACTTG+AGG - chr4_2:65856807-65856826 Msa0616160:intron 35.0%
TGTGATATGTAGTGTATCTG+TGG + chr4_2:65856908-65856927 None:intergenic 35.0%
CATTCCATGTGCATTTAGTT+TGG - chr4_2:65856944-65856963 Msa0616160:intron 35.0%
ACAACCAAACTAAATGCACA+TGG + chr4_2:65856951-65856970 None:intergenic 35.0%
AATAACTGGACACATTCCAA+AGG - chr4_2:65857274-65857293 Msa0616160:intron 35.0%
!!! CATAAATGTTTTGGAGACCA+AGG - chr4_2:65857386-65857405 Msa0616160:intron 35.0%
TTAGTTAGGTTTAGGAAAGG+AGG - chr4_2:65857448-65857467 Msa0616160:intron 35.0%
! AGAGTACCCAAAACTAAGTA+AGG - chr4_2:65857511-65857530 Msa0616160:intron 35.0%
GAGTACCCAAAACTAAGTAA+GGG - chr4_2:65857512-65857531 Msa0616160:intron 35.0%
TCTTGTGTAAAAACAGGGTA+AGG + chr4_2:65857612-65857631 None:intergenic 35.0%
!!! TTACCCTGTTTTTACACAAG+AGG - chr4_2:65857611-65857630 Msa0616160:intron 35.0%
GGGTCTATCTTACAAAAGAA+AGG - chr4_2:65857741-65857760 Msa0616160:intron 35.0%
TTGAAGTAGAGAAATGCTTC+AGG - chr4_2:65857802-65857821 Msa0616160:intron 35.0%
TATGTATGGGTCAGAAATGT+TGG - chr4_2:65857883-65857902 Msa0616160:intron 35.0%
ATGTATGGGTCAGAAATGTT+GGG - chr4_2:65857884-65857903 Msa0616160:intron 35.0%
GCAATCATGAGCATAAATGA+TGG - chr4_2:65857916-65857935 Msa0616160:intron 35.0%
TGAGCATAAATGATGGTTGT+AGG - chr4_2:65857923-65857942 Msa0616160:intron 35.0%
AAGTTAGGGTAGCTACTATA+TGG - chr4_2:65858063-65858082 Msa0616160:intron 35.0%
TTCAACCTCGCATATTATGA+AGG + chr4_2:65858129-65858148 None:intergenic 35.0%
ATAATATGCGAGGTTGAAGA+TGG - chr4_2:65858131-65858150 Msa0616160:intron 35.0%
GTAACTCTTACAAATGGGTA+GGG - chr4_2:65858161-65858180 Msa0616160:intron 35.0%
TAACTCTTACAAATGGGTAG+GGG - chr4_2:65858162-65858181 Msa0616160:intron 35.0%
TACATAGAATTTCCTGATGC+CGG + chr4_2:65858244-65858263 None:intergenic 35.0%
AAACCAGTAATAACGCAAAC+AGG + chr4_2:65858391-65858410 None:intergenic 35.0%
TTGATTACCAGTAGTTCAGT+TGG - chr4_2:65858460-65858479 Msa0616160:intron 35.0%
ATAGACAAAGGGAAATCTTC+CGG + chr4_2:65858520-65858539 None:intergenic 35.0%
! AAAGCTTCTTTTGTAGCGTA+TGG + chr4_2:65858614-65858633 None:intergenic 35.0%
TTAGATCAAACCATTGCAGA+AGG + chr4_2:65858832-65858851 None:intergenic 35.0%
GGTTTGATCTAATGTTCCAT+AGG - chr4_2:65858840-65858859 Msa0616160:CDS 35.0%
TTGATCTAATGTTCCATAGG+AGG - chr4_2:65858843-65858862 Msa0616160:CDS 35.0%
CTTAAGATGACATGGTTCAT+TGG + chr4_2:65858966-65858985 None:intergenic 35.0%
TGAACCATGTCATCTTAAGA+AGG - chr4_2:65858967-65858986 Msa0616160:intron 35.0%
CTTTCCTTCTTAAGATGACA+TGG + chr4_2:65858974-65858993 None:intergenic 35.0%
!!! TTTTCTTAGTCTTGAAGTCC+AGG - chr4_2:65859053-65859072 Msa0616160:CDS 35.0%
!! TTTCTTAGTCTTGAAGTCCA+GGG - chr4_2:65859054-65859073 Msa0616160:CDS 35.0%
! CTCTGAAAAGCTAGAGAAAT+TGG + chr4_2:65859144-65859163 None:intergenic 35.0%
TAAACACAATTTCATGGGTG+TGG + chr4_2:65859197-65859216 None:intergenic 35.0%
AGAAAAGAAACGAATATGGG+AGG - chr4_2:65859512-65859531 Msa0616160:intron 35.0%
GGCTTATATGATTCAGTTTC+TGG - chr4_2:65859533-65859552 Msa0616160:intron 35.0%
! CATTGTCGATCTCTTTTTCT+TGG + chr4_2:65859573-65859592 None:intergenic 35.0%
!! TCGTAGAATTCCTACTTTTG+AGG - chr4_2:65859637-65859656 Msa0616160:intron 35.0%
GAATCTTCATCCTCAAAAGT+AGG + chr4_2:65859650-65859669 None:intergenic 35.0%
GGAGGAAAAAAAAATCACCA+AGG + chr4_2:65859683-65859702 None:intergenic 35.0%
CAATGGCTTCTTTCATGATT+TGG + chr4_2:65859770-65859789 None:intergenic 35.0%
!!! TCTATTTTAATCCCAACCTG+AGG + chr4_2:65859815-65859834 None:intergenic 35.0%
!!! ACCCTGCTCATTTTTTTATC+AGG - chr4_2:65859901-65859920 Msa0616160:CDS 35.0%
CTCCTGATAAAAAAATGAGC+AGG + chr4_2:65859906-65859925 None:intergenic 35.0%
GTATAGATTGAAACAAGGAG+TGG - chr4_2:65860010-65860029 Msa0616160:CDS 35.0%
! TTTTGTGGCTGTTCTTCATC+GGG + chr4_2:65855712-65855731 None:intergenic 40.0%
! GTTTTGTGGCTGTTCTTCAT+CGG + chr4_2:65855713-65855732 None:intergenic 40.0%
ATGCGAAGGAGGTAATGATT+AGG - chr4_2:65855905-65855924 Msa0616160:intron 40.0%
GTGTATTTGTGCTCATCTAG+TGG - chr4_2:65856106-65856125 Msa0616160:CDS 40.0%
GCTCTCACAAATAATCTCAC+AGG + chr4_2:65856140-65856159 None:intergenic 40.0%
ATCTACTAGCATAAGCACCT+GGG + chr4_2:65856386-65856405 None:intergenic 40.0%
TATCTACTAGCATAAGCACC+TGG + chr4_2:65856387-65856406 None:intergenic 40.0%
!! GACCATAATCAGGTGTTGTT+TGG + chr4_2:65856578-65856597 None:intergenic 40.0%
!!! TTTTGGCTCAGCCAGTAATA+AGG - chr4_2:65856620-65856639 Msa0616160:intron 40.0%
CAGCCAGTAATAAGGAAGAA+AGG - chr4_2:65856628-65856647 Msa0616160:intron 40.0%
TCGCCTTTCTTCCTTATTAC+TGG + chr4_2:65856634-65856653 None:intergenic 40.0%
AGTAATAAGGAAGAAAGGCG+AGG - chr4_2:65856633-65856652 Msa0616160:intron 40.0%
GGAGAAGAAAATGTCACAAG+AGG - chr4_2:65856654-65856673 Msa0616160:intron 40.0%
!! CTTTTAGAAGCTGCTCAAAC+AGG - chr4_2:65856682-65856701 Msa0616160:intron 40.0%
ACAACTCAAGAGAAATCCCT+TGG + chr4_2:65857406-65857425 None:intergenic 40.0%
TTAGGTTTAGGAAAGGAGGA+TGG - chr4_2:65857452-65857471 Msa0616160:intron 40.0%
!! GGTTGCCCTTACTTAGTTTT+GGG + chr4_2:65857520-65857539 None:intergenic 40.0%
AAAACTAAGTAAGGGCAACC+CGG - chr4_2:65857520-65857539 Msa0616160:intron 40.0%
CGTACAATACACCAAATGGT+GGG + chr4_2:65857586-65857605 None:intergenic 40.0%
CAGCCTCTTGTGTAAAAACA+GGG + chr4_2:65857617-65857636 None:intergenic 40.0%
ACAGCCTCTTGTGTAAAAAC+AGG + chr4_2:65857618-65857637 None:intergenic 40.0%
GTTGTTGTCATGTGACTGTA+AGG + chr4_2:65857662-65857681 None:intergenic 40.0%
ATGTCCCACAATATCCAAAC+AGG - chr4_2:65857774-65857793 Msa0616160:intron 40.0%
CTGTCCTGTTTGGATATTGT+GGG + chr4_2:65857781-65857800 None:intergenic 40.0%
ATGATGGTTGTAGGAATGAG+TGG - chr4_2:65857932-65857951 Msa0616160:intron 40.0%
TTGTAGGAATGAGTGGAGTA+TGG - chr4_2:65857939-65857958 Msa0616160:intron 40.0%
TGTAGGAATGAGTGGAGTAT+GGG - chr4_2:65857940-65857959 Msa0616160:intron 40.0%
! CATATTATGAAGGCATGTGG+TGG + chr4_2:65858119-65858138 None:intergenic 40.0%
! TCGCATATTATGAAGGCATG+TGG + chr4_2:65858122-65858141 None:intergenic 40.0%
ACATGCCTTCATAATATGCG+AGG - chr4_2:65858121-65858140 Msa0616160:intron 40.0%
GGTAACTCTTACAAATGGGT+AGG - chr4_2:65858160-65858179 Msa0616160:intron 40.0%
AACTCTTACAAATGGGTAGG+GGG - chr4_2:65858163-65858182 Msa0616160:intron 40.0%
! AATTTAAAGTACCCGGCATC+AGG - chr4_2:65858229-65858248 Msa0616160:intron 40.0%
ACATAGAATTTCCTGATGCC+GGG + chr4_2:65858243-65858262 None:intergenic 40.0%
ATAACGCAAACAGGTTGTTC+TGG + chr4_2:65858382-65858401 None:intergenic 40.0%
CAACCTGTTTGCGTTATTAC+TGG - chr4_2:65858385-65858404 Msa0616160:intron 40.0%
CATCAAGAAAGGCTCTTACT+TGG + chr4_2:65858419-65858438 None:intergenic 40.0%
GTACAGTGGCTATAGACAAA+GGG + chr4_2:65858531-65858550 None:intergenic 40.0%
AAGGAGTTCTCTCTTGATAC+AGG - chr4_2:65858564-65858583 Msa0616160:intron 40.0%
AAGCTAGAGAAATTGGGTGA+AGG + chr4_2:65859137-65859156 None:intergenic 40.0%
!!! TCTAGCTTTTCAGAGAGAGA+TGG - chr4_2:65859149-65859168 Msa0616160:intron 40.0%
CTGTAAGAGCTATTGCATGA+GGG - chr4_2:65859309-65859328 Msa0616160:intron 40.0%
TGTAAGAGCTATTGCATGAG+GGG - chr4_2:65859310-65859329 Msa0616160:intron 40.0%
!! AAAAGCATTCATGTGGGAGT+TGG - chr4_2:65859346-65859365 Msa0616160:intron 40.0%
! GGGAGTTGGTTAATGATAGT+AGG - chr4_2:65859360-65859379 Msa0616160:intron 40.0%
!! GGGATTATTTTGCAGCATTC+TGG - chr4_2:65859472-65859491 Msa0616160:intron 40.0%
! GTCGATCTCTTTTTCTTGGT+TGG + chr4_2:65859569-65859588 None:intergenic 40.0%
AAGATTCTGACTAACTGCCT+TGG - chr4_2:65859663-65859682 Msa0616160:intron 40.0%
AGGCCTGTTTCAGTAATCTT+GGG - chr4_2:65859848-65859867 Msa0616160:CDS 40.0%
AGACCCAAGATTACTGAAAC+AGG + chr4_2:65859854-65859873 None:intergenic 40.0%
TATTCCAATACTTCAGCGCA+AGG + chr4_2:65859952-65859971 None:intergenic 40.0%
! CTTTTACAAGACAGACACCA+TGG - chr4_2:65859983-65860002 Msa0616160:CDS 40.0%
GGATACGGTATAACAACGAT+TGG - chr4_2:65860078-65860097 Msa0616160:intron 40.0%
! ATCTTGTCTCGGGTATTGTA+TGG + chr4_2:65860352-65860371 None:intergenic 40.0%
GAGATCGAATCTTCTACTGC+TGG - chr4_2:65855412-65855431 Msa0616160:three_prime_UTR 45.0%
!! AGATGAATTGTTCTGGGGTC+AGG - chr4_2:65855499-65855518 Msa0616160:three_prime_UTR 45.0%
CCAAGAAGAAGCTGAAATCG+CGG - chr4_2:65855556-65855575 Msa0616160:three_prime_UTR 45.0%
ATATCCTGGGAAGACGACAT+TGG - chr4_2:65855768-65855787 Msa0616160:three_prime_UTR 45.0%
TTCAGCTTGGCGAACAATGA+CGG + chr4_2:65855947-65855966 None:intergenic 45.0%
GAATGGCTTCTCTTTCAGCT+TGG + chr4_2:65855960-65855979 None:intergenic 45.0%
AGCTCTCAAAGCAACCTACA+AGG - chr4_2:65855984-65856003 Msa0616160:intron 45.0%
ACATTCCAAAGGAACGACCT+TGG - chr4_2:65857285-65857304 Msa0616160:intron 45.0%
CTGAAACAAAGCCTCTACCA+AGG + chr4_2:65857305-65857324 None:intergenic 45.0%
!! GGTAGAGGCTTTGTTTCAGA+TGG - chr4_2:65857306-65857325 Msa0616160:intron 45.0%
! GGGTTGCCCTTACTTAGTTT+TGG + chr4_2:65857521-65857540 None:intergenic 45.0%
GCGTACAATACACCAAATGG+TGG + chr4_2:65857587-65857606 None:intergenic 45.0%
GCTGCGTACAATACACCAAA+TGG + chr4_2:65857590-65857609 None:intergenic 45.0%
! TTACACAAGAGGCTGTTTCC+AGG - chr4_2:65857622-65857641 Msa0616160:intron 45.0%
TCATGTGACTGTAAGGTCAC+GGG + chr4_2:65857655-65857674 None:intergenic 45.0%
GTCATGTGACTGTAAGGTCA+CGG + chr4_2:65857656-65857675 None:intergenic 45.0%
!! ACTTAGTTGTGGGTACTGAG+GGG + chr4_2:65857707-65857726 None:intergenic 45.0%
!! CACTTAGTTGTGGGTACTGA+GGG + chr4_2:65857708-65857727 None:intergenic 45.0%
! ACACTTAGTTGTGGGTACTG+AGG + chr4_2:65857709-65857728 None:intergenic 45.0%
CCTGTCCTGTTTGGATATTG+TGG + chr4_2:65857782-65857801 None:intergenic 45.0%
CCACAATATCCAAACAGGAC+AGG - chr4_2:65857779-65857798 Msa0616160:intron 45.0%
CTACTTCAACCTGTCCTGTT+TGG + chr4_2:65857791-65857810 None:intergenic 45.0%
TTATAGCTGACCCCACTTAG+TGG - chr4_2:65858289-65858308 Msa0616160:intron 45.0%
TATAGCTGACCCCACTTAGT+GGG - chr4_2:65858290-65858309 Msa0616160:intron 45.0%
! AAGCCTTATCCCACTAAGTG+GGG + chr4_2:65858302-65858321 None:intergenic 45.0%
! CAAGCCTTATCCCACTAAGT+GGG + chr4_2:65858303-65858322 None:intergenic 45.0%
AAGAAAGGCTCTTACTTGGC+AGG + chr4_2:65858415-65858434 None:intergenic 45.0%
GGTACAGTGGCTATAGACAA+AGG + chr4_2:65858532-65858551 None:intergenic 45.0%
! AACATCATGGTGGGGAAAAC+TGG + chr4_2:65858880-65858899 None:intergenic 45.0%
GATGCTCAACTTGCGTCATT+TGG - chr4_2:65859010-65859029 Msa0616160:intron 45.0%
TCCAGGGCACATACTATTGT+TGG - chr4_2:65859070-65859089 Msa0616160:CDS 45.0%
TCCAACAATAGTATGTGCCC+TGG + chr4_2:65859074-65859093 None:intergenic 45.0%
TACAGCTTGACGTGTAGAGT+TGG + chr4_2:65859294-65859313 None:intergenic 45.0%
GCTGTAAGAGCTATTGCATG+AGG - chr4_2:65859308-65859327 Msa0616160:intron 45.0%
AATTCTACGAAACCGAGCCA+AGG + chr4_2:65859627-65859646 None:intergenic 45.0%
ATCGTGATGAAGCACAGCAA+TGG + chr4_2:65859787-65859806 None:intergenic 45.0%
TGCTGTGCTTCATCACGATT+CGG - chr4_2:65859788-65859807 Msa0616160:CDS 45.0%
GAGGCCTGTTTCAGTAATCT+TGG - chr4_2:65859847-65859866 Msa0616160:CDS 45.0%
CAGTAATCTTGGGTCTTCTG+TGG - chr4_2:65859858-65859877 Msa0616160:CDS 45.0%
CAAACCTTGCGCTGAAGTAT+TGG - chr4_2:65859945-65859964 Msa0616160:CDS 45.0%
!! AATTGAATTAATTAATTAAT+CGG + chr4_2:65855639-65855658 None:intergenic 5.0%
!!! ATGTTTTTTTTTTTTTTTTT+TGG - chr4_2:65856603-65856622 Msa0616160:intron 5.0%
GTGCGAGCGAGTTAGTACAA+TGG - chr4_2:65855364-65855383 Msa0616160:three_prime_UTR 50.0%
CGAGCGAGTTAGTACAATGG+AGG - chr4_2:65855367-65855386 Msa0616160:three_prime_UTR 50.0%
CCGCGATTTCAGCTTCTTCT+TGG + chr4_2:65855559-65855578 None:intergenic 50.0%
TTAGCCAATGTCGTCTTCCC+AGG + chr4_2:65855775-65855794 None:intergenic 50.0%
! GCGAACAATGACGGAAGTTC+TGG + chr4_2:65855938-65855957 None:intergenic 50.0%
!! TGCTTTGAGAGCTTCGCGAA+TGG + chr4_2:65855977-65855996 None:intergenic 50.0%
!!! GGAGCGAGTTTTAGCTAGAG+AGG - chr4_2:65856835-65856854 Msa0616160:intron 50.0%
CGCACATTCTTGAGACGTTG+TGG + chr4_2:65857071-65857090 None:intergenic 50.0%
CTCTACCAAGGTCGTTCCTT+TGG + chr4_2:65857293-65857312 None:intergenic 50.0%
CAAAGGAACGACCTTGGTAG+AGG - chr4_2:65857291-65857310 Msa0616160:intron 50.0%
CAACTTTACCAGTTGCGCCA+AGG - chr4_2:65857678-65857697 Msa0616160:intron 50.0%
GTGGGCATACTGAGATGGAT+AGG - chr4_2:65857967-65857986 Msa0616160:intron 50.0%
CGAGGTTGAAGATGGCATGT+TGG - chr4_2:65858139-65858158 Msa0616160:intron 50.0%
TGACCCCACTTAGTGGGATA+AGG - chr4_2:65858296-65858315 Msa0616160:intron 50.0%
! CCAAGCCTTATCCCACTAAG+TGG + chr4_2:65858304-65858323 None:intergenic 50.0%
CCACTTAGTGGGATAAGGCT+TGG - chr4_2:65858301-65858320 Msa0616160:intron 50.0%
! AGGTACCGTGATCCAAAGAC+TGG - chr4_2:65858584-65858603 Msa0616160:intron 50.0%
GGTACCGTGATCCAAAGACT+GGG - chr4_2:65858585-65858604 Msa0616160:intron 50.0%
! ATTGGGTGAAGGCACATGCA+TGG + chr4_2:65859126-65859145 None:intergenic 50.0%
ACATCCACATGATCGGTCCT+TGG - chr4_2:65859607-65859626 Msa0616160:intron 50.0%
! TTCATCACGATTCGGACCTC+AGG - chr4_2:65859796-65859815 Msa0616160:CDS 50.0%
GGCTGTTCTTCATCGGGTTC+AGG + chr4_2:65855706-65855725 None:intergenic 55.0%
CAACCAGGACGATGATGCGA+AGG - chr4_2:65855891-65855910 Msa0616160:intron 55.0%
AAGGTCACGGGTTCAAGTCC+TGG + chr4_2:65857643-65857662 None:intergenic 55.0%
!! TGGGTACTGAGGGGTAACCT+TGG + chr4_2:65857698-65857717 None:intergenic 55.0%
TGAGTGGAGTATGGGACGAG+TGG - chr4_2:65857948-65857967 Msa0616160:intron 55.0%
GAGTGGAGTATGGGACGAGT+GGG - chr4_2:65857949-65857968 Msa0616160:intron 55.0%
GACGAGTGGGCATACTGAGA+TGG - chr4_2:65857962-65857981 Msa0616160:intron 55.0%
GCAGCCCAGTCTTTGGATCA+CGG + chr4_2:65858592-65858611 None:intergenic 55.0%
GGTCTGCAGTCATCCTCCTA+TGG + chr4_2:65858859-65858878 None:intergenic 55.0%
CACATGATCGGTCCTTGGCT+CGG - chr4_2:65859612-65859631 Msa0616160:intron 55.0%
! TCACGATTCGGACCTCAGGT+TGG - chr4_2:65859800-65859819 Msa0616160:CDS 55.0%
! CACGATTCGGACCTCAGGTT+GGG - chr4_2:65859801-65859820 Msa0616160:CDS 55.0%
CGTGCATCTCGAGCGACAAG+AGG - chr4_2:65855437-65855456 Msa0616160:three_prime_UTR 60.0%
CCTCCTTCGCATCATCGTCC+TGG + chr4_2:65855897-65855916 None:intergenic 60.0%
CCAGGACGATGATGCGAAGG+AGG - chr4_2:65855894-65855913 Msa0616160:intron 60.0%
ATGCGGGAGCTTCAGTGCAC+CGG + chr4_2:65857542-65857561 None:intergenic 60.0%
ACTGAAGCTCCCGCATACGC+AGG - chr4_2:65857546-65857565 Msa0616160:intron 60.0%
CTGAAGCTCCCGCATACGCA+GGG - chr4_2:65857547-65857566 Msa0616160:intron 60.0%
TTCCTGGACCCTGCGTATGC+GGG + chr4_2:65857558-65857577 None:intergenic 60.0%
CTTCCTGGACCCTGCGTATG+CGG + chr4_2:65857559-65857578 None:intergenic 60.0%
GCATACGCAGGGTCCAGGAA+GGG - chr4_2:65857558-65857577 Msa0616160:intron 60.0%
CATACGCAGGGTCCAGGAAG+GGG - chr4_2:65857559-65857578 Msa0616160:intron 60.0%
! CAAATGGTGGGACCCCTTCC+TGG + chr4_2:65857574-65857593 None:intergenic 60.0%
CAGGAAGGGGTCCCACCATT+TGG - chr4_2:65857572-65857591 Msa0616160:intron 60.0%
AGGGGTAACCTTGGCGCAAC+TGG + chr4_2:65857689-65857708 None:intergenic 60.0%
GCGTATGGCAGCCCAGTCTT+TGG + chr4_2:65858599-65858618 None:intergenic 60.0%
CGAGCCAAGGACCGATCATG+TGG + chr4_2:65859614-65859633 None:intergenic 60.0%
TGCGGGAGCTTCAGTGCACC+GGG + chr4_2:65857541-65857560 None:intergenic 65.0%
CGCATACGCAGGGTCCAGGA+AGG - chr4_2:65857557-65857576 Msa0616160:intron 65.0%
CTCCCGCATACGCAGGGTCC+AGG - chr4_2:65857553-65857572 Msa0616160:intron 70.0%
Chromosome Type Strat End Strand Name
chr4_2 gene 65855340 65860393 65855340 ID=Msa0616160;Name=Msa0616160
chr4_2 mRNA 65855340 65860393 65855340 ID=Msa0616160-mRNA-1;Parent=Msa0616160;Name=Msa0616160-mRNA-1;_AED=0.07;_eAED=0.07;_QI=43|0.88|0.9|1|0.77|0.7|10|532|370
chr4_2 exon 65855340 65855810 65855340 ID=Msa0616160-mRNA-1:exon:18706;Parent=Msa0616160-mRNA-1
chr4_2 exon 65855916 65855968 65855916 ID=Msa0616160-mRNA-1:exon:18705;Parent=Msa0616160-mRNA-1
chr4_2 exon 65856049 65856246 65856049 ID=Msa0616160-mRNA-1:exon:18704;Parent=Msa0616160-mRNA-1
chr4_2 exon 65857061 65857147 65857061 ID=Msa0616160-mRNA-1:exon:18703;Parent=Msa0616160-mRNA-1
chr4_2 exon 65857314 65857356 65857314 ID=Msa0616160-mRNA-1:exon:18702;Parent=Msa0616160-mRNA-1
chr4_2 exon 65858648 65858716 65858648 ID=Msa0616160-mRNA-1:exon:18701;Parent=Msa0616160-mRNA-1
chr4_2 exon 65858801 65858920 65858801 ID=Msa0616160-mRNA-1:exon:18700;Parent=Msa0616160-mRNA-1
chr4_2 exon 65859030 65859102 65859030 ID=Msa0616160-mRNA-1:exon:18699;Parent=Msa0616160-mRNA-1
chr4_2 exon 65859728 65860033 65859728 ID=Msa0616160-mRNA-1:exon:18698;Parent=Msa0616160-mRNA-1
chr4_2 exon 65860126 65860393 65860126 ID=Msa0616160-mRNA-1:exon:18697;Parent=Msa0616160-mRNA-1
chr4_2 five_prime_UTR 65860351 65860393 65860351 ID=Msa0616160-mRNA-1:five_prime_utr;Parent=Msa0616160-mRNA-1
chr4_2 CDS 65860126 65860350 65860126 ID=Msa0616160-mRNA-1:cds;Parent=Msa0616160-mRNA-1
chr4_2 CDS 65859728 65860033 65859728 ID=Msa0616160-mRNA-1:cds;Parent=Msa0616160-mRNA-1
chr4_2 CDS 65859030 65859102 65859030 ID=Msa0616160-mRNA-1:cds;Parent=Msa0616160-mRNA-1
chr4_2 CDS 65858801 65858920 65858801 ID=Msa0616160-mRNA-1:cds;Parent=Msa0616160-mRNA-1
chr4_2 CDS 65858648 65858716 65858648 ID=Msa0616160-mRNA-1:cds;Parent=Msa0616160-mRNA-1
chr4_2 CDS 65857314 65857356 65857314 ID=Msa0616160-mRNA-1:cds;Parent=Msa0616160-mRNA-1
chr4_2 CDS 65857061 65857147 65857061 ID=Msa0616160-mRNA-1:cds;Parent=Msa0616160-mRNA-1
chr4_2 CDS 65856057 65856246 65856057 ID=Msa0616160-mRNA-1:cds;Parent=Msa0616160-mRNA-1
chr4_2 three_prime_UTR 65856049 65856056 65856049 ID=Msa0616160-mRNA-1:three_prime_utr;Parent=Msa0616160-mRNA-1
chr4_2 three_prime_UTR 65855916 65855968 65855916 ID=Msa0616160-mRNA-1:three_prime_utr;Parent=Msa0616160-mRNA-1
chr4_2 three_prime_UTR 65855340 65855810 65855340 ID=Msa0616160-mRNA-1:three_prime_utr;Parent=Msa0616160-mRNA-1
Gene Sequence

>Msa0616160

ATGGAGGAAAAGAATTCAGGCGAAGAAGAGAGATCGAATCTTCTACTGCTGGATCGTGCATCTCGAGCGACAAGAGGTAAACGTCTTTCGAAGCTTCTCGACGACGAAGTTCAACAAGATGAATTGTTCTGGGGTCAGGATGCTCTCAAAGAAGAAGACGAAGACGATAACTACCAAGAAGAAGCTGAAATCGCGGACGAATTCGACTCCGATTTCGATCAAGACGAGCCTGAACCCGATGAAGAACAGCCACAAAACGATGATGAAAGAATGCATAAAAAGAAGCGATTGATATATCCTGGGAAGACGACATTGGCTAAAAAGAAGAAAAAGAAGAAAATCTTATCTAATTTGGATGATCCTCCCAAAATTGATGATAATGATGACGGAGATGATGATAAAAACAACAAGAACAACAACCAGGACGATGATGCGAAGGAGGTAATGATTAGGAAGTCTACCAGAACTTCCGTCATTGTTCGCCAAGCTGAAAGAGAAGCCATTCGCGAAGCTCTCAAAGCAACCTACAAGCCAGTAATAAGGAAGAAAGGCGAGGAGAAGAAAATGTCACAAGAGGAGATGCTTTTAGAAGCTGCTCAAACAGAAATTATGAACTTGAGGAATTTGGAGCGAGTTTTAGCTAGAGAGGAAGAAGTTAAGAGAAGAGCTATTGTGCATAAAACTGTCTTTAATGGTCCACAGATACACTACATATCACAAAATGGTTGTTCGTATTTGGAGTTTACTAAAGGGGCATCATTTCACTCAGATATTGCCACAACGTCTCAAGAATATCCAGAACAACCTGTTTGCGTTATTACTGGTTTGCCTGCCAAGTACCGTGATCCAAAGACTGGGCTGCCATACGCTACAAAAGAAGCTTTTAAAATAATTCGACAACGGTATGACCTTCTTGATTGCAACATTCTGGATGAAAGTGCAAACTCTAGAAAAGAAACGAATATGGGAGGCTTATATGATTCAGTTTCTGGATATGGTTTTCCAACCAAGAAAAAGAGATCGACAATGCGAGATAAAAATATACATCCACATGATCGGTCCTTGGCTCGGTTTCGTAGAATTCCTACTTTTGAGGATGAAGATTCTGACTAA

Protein sequence

>Msa0616160

MEEKNSGEEERSNLLLLDRASRATRGKRLSKLLDDEVQQDELFWGQDALKEEDEDDNYQEEAEIADEFDSDFDQDEPEPDEEQPQNDDERMHKKKRLIYPGKTTLAKKKKKKKILSNLDDPPKIDDNDDGDDDKNNKNNNQDDDAKEVMIRKSTRTSVIVRQAEREAIREALKATYKPVIRKKGEEKKMSQEEMLLEAAQTEIMNLRNLERVLAREEEVKRRAIVHKTVFNGPQIHYISQNGCSYLEFTKGASFHSDIATTSQEYPEQPVCVITGLPAKYRDPKTGLPYATKEAFKIIRQRYDLLDCNILDESANSRKETNMGGLYDSVSGYGFPTKKKRSTMRDKNIHPHDRSLARFRRIPTFEDEDSD*