AlfalfaGEDB | Msa0867740

M. sativa cultivar zhongmu-4 / Msa0867740

KEGG: K11252
GO: GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005730 GO:0005737 GO:0005911 GO:0009506 GO:0009507 GO:0009532 GO:0009534 GO:0009536 GO:0009570 GO:0009579 GO:0030054 GO:0031974 GO:0031976 GO:0031981 GO:0031984 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0055044 GO:0070013
PFAM: PF00125.27

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0867740	XP_003606627.1	99.324	148	1	0	1	148	1	148	3.31e-98	289

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0867740	sp\|Q1S9I9\|H2B1_MEDTR	99.324	148	1	0	1	148	1	148	8.80e-101	288

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0867740	G7JTQ7	99.324	148	1	0	1	148	1	148	1.58e-98	289

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0603410	Msa0867740	0.827079	1.906944e-54	-8.615850e-47
Msa0758590	Msa0867740	0.805673	1.191857e-49	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0867740	MtrunA17_Chr4g0031671	99.324	148	1	0	1	148	1	148	3.04e-102	289
Msa0867740	MtrunA17_Chr4g0031631	99.324	148	1	0	1	148	1	148	3.04e-102	289
Msa0867740	MtrunA17_Chr4g0030941	99.324	148	1	0	1	148	1	148	3.04e-102	289
Msa0867740	MtrunA17_Chr4g0035061	99.324	148	1	0	1	148	1	148	6.48e-102	288
Msa0867740	MtrunA17_Chr4g0035631	99.324	148	1	0	1	148	1	148	6.48e-102	288
Msa0867740	MtrunA17_Chr4g0031061	98.649	148	2	0	1	148	1	148	2.95e-101	286
Msa0867740	MtrunA17_Chr4g0032321	98.649	148	2	0	1	148	1	148	2.95e-101	286
Msa0867740	MtrunA17_Chr4g0035071	97.973	148	3	0	1	148	1	148	3.19e-100	284
Msa0867740	MtrunA17_Chr4g0030981	98.649	148	1	1	1	148	1	147	8.74e-100	283
Msa0867740	MtrunA17_Chr4g0030951	99.306	144	1	0	5	148	4	147	3.68e-99	281

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0867740	AT3G45980.1	88.742	151	13	2	1	148	1	150	1.47e-83	242
Msa0867740	AT2G28720.1	86.093	151	18	1	1	148	1	151	9.70e-81	235
Msa0867740	AT1G07790.1	86.928	153	10	3	1	148	1	148	7.69e-80	233
Msa0867740	AT5G59910.1	91.176	136	9	2	13	148	18	150	2.66e-77	226
Msa0867740	AT3G46030.1	94.444	126	6	1	23	148	21	145	8.66e-76	222
Msa0867740	AT2G37470.1	82.432	148	15	3	1	147	1	138	6.01e-71	210
Msa0867740	AT3G53650.1	81.208	149	16	3	1	148	1	138	4.61e-69	205
Msa0867740	AT5G22880.1	87.586	145	16	2	4	148	3	145	4.25e-67	200
Msa0867740	AT5G02570.1	79.730	148	14	1	1	148	1	132	9.71e-67	199
Msa0867740	AT3G09480.1	84.127	126	16	1	23	148	5	126	2.13e-62	187

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Find 46 sgRNAs with CRISPR-Local

Find 43 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACAAGTTCACCCGGACAT+TGG	0.574952	6_1:+813131	Msa0867740:CDS
AAGAAGCTACCAAAGGAAGG+TGG	0.666846	6_1:+813029	Msa0867740:CDS
AAGAATCTTCCAGACTCGCT+AGG	0.594905	6_1:+813219	Msa0867740:CDS
AAGGAAGGTGGTTCAGCCGC+CGG	0.504946	6_1:+813041	Msa0867740:CDS
AATCTAAGAGCTTGTGAATT+TGG	0.203095	6_1:-813351	None:intergenic
AATTCCTTCAATGGCGCCAA+AGG	0.495983	6_1:+812914	None:intergenic
ACCCTCAGAAACAGCATGCT+TGG	0.462043	6_1:-813315	None:intergenic
AGAAGCCGACGATCACTTCG+AGG	0.586465	6_1:+813249	Msa0867740:CDS
AGCAGAGAAGAAACCCGCAG+AGG	0.698236	6_1:+812950	Msa0867740:CDS
AGCATGCTTGGCCAATTCAC+CGG	0.471051	6_1:-813303	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TCTCTTCTTCTTCTTGTCTC+CGG	-	chr6_1:813063-813082	None:intergenic	40.0%
TTGCTTGAGATACCAATGTC+CGG	-	chr6_1:813146-813165	None:intergenic	40.0%
GAAACTGTTCATGATACCCA+TGG	-	chr6_1:813171-813190	None:intergenic	40.0%
TGTGGATTTCTTCTCCTCTG+CGG	-	chr6_1:812967-812986	None:intergenic	45.0%
GGAAAGAAGCTACCAAAGGA+AGG	+	chr6_1:813026-813045	Msa0867740:CDS	45.0%
AAGAAGCTACCAAAGGAAGG+TGG	+	chr6_1:813029-813048	Msa0867740:CDS	45.0%
AAACAAGTTCACCCGGACAT+TGG	+	chr6_1:813131-813150	Msa0867740:CDS	45.0%
TGCTTGAGATACCAATGTCC+GGG	-	chr6_1:813145-813164	None:intergenic	45.0%
TGGTATCTCAAGCAAAGCCA+TGG	+	chr6_1:813151-813170	Msa0867740:CDS	45.0%
GGTATCTCAAGCAAAGCCAT+GGG	+	chr6_1:813152-813171	Msa0867740:CDS	45.0%

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Chromosome	Type	Strat	End	Strand	Name
chr6_1	gene	812924	813370	812924	ID=Msa0867740;Name=Msa0867740
chr6_1	mRNA	812924	813370	812924	ID=Msa0867740-mRNA-1;Parent=Msa0867740;Name=Msa0867740-mRNA-1;_AED=0.21;_eAED=0.21;_QI=0\|-1\|0\|1\|-1\|1\|1\|0\|148
chr6_1	exon	812924	813370	812924	ID=Msa0867740-mRNA-1:exon:234;Parent=Msa0867740-mRNA-1
chr6_1	CDS	812924	813370	812924	ID=Msa0867740-mRNA-1:cds;Parent=Msa0867740-mRNA-1

Gene Sequence

>Msa0867740

ATGGCGCCAAAGGGAGAGAAGAAGCCAGCAGAGAAGAAACCCGCAGAGGAGAAGAAATCCACAGTCGCTGAGAAAGCTCCGGCGGAGAAGAAGCCAAAGGCTGGAAAGAAGCTACCAAAGGAAGGTGGTTCAGCCGCCGGAGACAAGAAGAAGAAGAGAAGCAAGAAGAGCGTTGAAACATACAAGATTTACATCTTCAAAGTTCTGAAACAAGTTCACCCGGACATTGGTATCTCAAGCAAAGCCATGGGTATCATGAACAGTTTCATCAACGACATCTTCGAGAAGCTCGCTCAAGAATCTTCCAGACTCGCTAGGTACAACAAGAAGCCGACGATCACTTCGAGGGAAATTCAGACCGCGGTCAGGCTTGTTCTGCCCGGTGAATTGGCCAAGCATGCTGTTTCTGAGGGTACCAAGGCTGTGACCAAATTCACAAGCTCTTAG

Protein sequence

>Msa0867740

MAPKGEKKPAEKKPAEEKKSTVAEKAPAEKKPKAGKKLPKEGGSAAGDKKKKRSKKSVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS*