Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0603410 | XP_003606627.1 | 91.781 | 146 | 2 | 1 | 1 | 136 | 1 | 146 | 1.53e-84 | 254 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0603410 | sp|Q1S9I9|H2B1_MEDTR | 91.781 | 146 | 2 | 1 | 1 | 136 | 1 | 146 | 2.35e-87 | 254 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0603410 | G7JTQ7 | 91.781 | 146 | 2 | 1 | 1 | 136 | 1 | 146 | 7.30e-85 | 254 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0005020 | Msa0603410 | 0.801489 | 8.788394e-49 | -8.615850e-47 |
| Msa0019930 | Msa0603410 | 0.813101 | 3.034599e-51 | -8.615850e-47 |
| Msa0020540 | Msa0603410 | 0.808677 | 2.753146e-50 | -8.615850e-47 |
| Msa0035140 | Msa0603410 | 0.827203 | 1.780573e-54 | -8.615850e-47 |
| Msa0037740 | Msa0603410 | 0.804202 | 2.419576e-49 | -8.615850e-47 |
| Msa0053070 | Msa0603410 | 0.820583 | 6.352954e-53 | -8.615850e-47 |
| Msa0098410 | Msa0603410 | 0.831988 | 1.221212e-55 | -8.615850e-47 |
| Msa0115550 | Msa0603410 | 0.840204 | 1.001270e-57 | -8.615850e-47 |
| Msa0603060 | Msa0603410 | 0.805982 | 1.026192e-49 | -8.615850e-47 |
| Msa0603410 | Msa0606100 | 0.818878 | 1.557300e-52 | -8.615850e-47 |
| Msa0603410 | Msa0620500 | 0.803699 | 3.077914e-49 | -8.615850e-47 |
| Msa0603410 | Msa0622920 | 0.812938 | 3.296213e-51 | -8.615850e-47 |
| Msa0603410 | Msa0645340 | 0.801449 | 8.958541e-49 | -8.615850e-47 |
| Msa0603410 | Msa0647050 | 0.816309 | 5.911074e-52 | -8.615850e-47 |
| Msa0603410 | Msa0659150 | 0.811958 | 5.395449e-51 | -8.615850e-47 |
| Msa0603410 | Msa0668900 | 0.800444 | 1.437038e-48 | -8.615850e-47 |
| Msa0603410 | Msa0698730 | 0.801274 | 9.730010e-49 | -8.615850e-47 |
| Msa0603410 | Msa0713920 | 0.801721 | 7.877953e-49 | -8.615850e-47 |
| Msa0603410 | Msa0714520 | 0.803867 | 2.840210e-49 | -8.615850e-47 |
| Msa0603410 | Msa0717830 | 0.807683 | 4.485071e-50 | -8.615850e-47 |
| Msa0603410 | Msa0718040 | 0.804871 | 1.754297e-49 | -8.615850e-47 |
| Msa0603410 | Msa0720280 | 0.811157 | 8.058116e-51 | -8.615850e-47 |
| Msa0603410 | Msa0747740 | 0.840877 | 6.671763e-58 | -8.615850e-47 |
| Msa0603410 | Msa0758590 | 0.823588 | 1.277887e-53 | -8.615850e-47 |
| Msa0603410 | Msa0778600 | 0.812505 | 4.099697e-51 | -8.615850e-47 |
| Msa0603410 | Msa0800660 | 0.840335 | 9.249561e-58 | -8.615850e-47 |
| Msa0603410 | Msa0803140 | 0.803885 | 2.815423e-49 | -8.615850e-47 |
| Msa0603410 | Msa0816230 | 0.820845 | 5.529407e-53 | -8.615850e-47 |
| Msa0603410 | Msa0867740 | 0.827079 | 1.906944e-54 | -8.615850e-47 |
| Msa0603410 | Msa0909760 | 0.851399 | 9.100204e-61 | -8.615850e-47 |
| Msa0603410 | Msa1008670 | 0.856173 | 3.846439e-62 | -8.615850e-47 |
| Msa0603410 | Msa1008680 | 0.827565 | 1.458458e-54 | -8.615850e-47 |
| Msa0603410 | Msa1033920 | 0.825270 | 5.137163e-54 | -8.615850e-47 |
| Msa0603410 | Msa1036090 | 0.809446 | 1.884350e-50 | -8.615850e-47 |
| Msa0603410 | Msa1076020 | 0.810037 | 1.406860e-50 | -8.615850e-47 |
| Msa0603410 | Msa1082380 | 0.800097 | 1.690844e-48 | -8.615850e-47 |
| Msa0603410 | Msa1116190 | 0.812547 | 4.013852e-51 | -8.615850e-47 |
| Msa0603410 | Msa1116660 | 0.824135 | 9.510194e-54 | -8.615850e-47 |
| Msa0603410 | Msa1122560 | 0.818525 | 1.873577e-52 | -8.615850e-47 |
| Msa0603410 | Msa1139050 | 0.831007 | 2.130989e-55 | -8.615850e-47 |
| Msa0603410 | Msa1162880 | 0.853592 | 2.158278e-61 | -8.615850e-47 |
| Msa0603410 | Msa1163350 | 0.808478 | 3.036178e-50 | -8.615850e-47 |
| Msa0603410 | Msa1165480 | 0.803473 | 3.428513e-49 | -8.615850e-47 |
| Msa0603410 | Msa1190390 | 0.805675 | 1.190225e-49 | -8.615850e-47 |
| Msa0603410 | Msa1214350 | 0.815151 | 1.070496e-51 | -8.615850e-47 |
| Msa0603410 | Msa1215980 | 0.803682 | 3.102097e-49 | -8.615850e-47 |
| Msa0603410 | Msa1220170 | 0.801156 | 1.028309e-48 | -8.615850e-47 |
| Msa0603410 | Msa1231780 | 0.819842 | 9.392478e-53 | -8.615850e-47 |
| Msa0603410 | Msa1305780 | 0.801523 | 8.648765e-49 | -8.615850e-47 |
| Msa0603410 | Msa1339170 | 0.821032 | 5.009729e-53 | -8.615850e-47 |
| Msa0603410 | Msa1339230 | 0.858222 | 9.550283e-63 | -8.615850e-47 |
| Msa0603410 | Msa1381470 | 0.812309 | 4.523611e-51 | -8.615850e-47 |
| Msa0603410 | Msa1385760 | 0.815956 | 7.088539e-52 | -8.615850e-47 |
| Msa0603410 | Msa1387500 | 0.816280 | 5.999955e-52 | -8.615850e-47 |
| Msa0603410 | Msa1399190 | 0.813204 | 2.881551e-51 | -8.615850e-47 |
| Msa0603410 | Msa1409230 | 0.816467 | 5.448230e-52 | -8.615850e-47 |
| Msa0603410 | Msa1410190 | 0.825511 | 4.504413e-54 | -8.615850e-47 |
| Msa0603410 | Msa1426320 | 0.801721 | 7.877761e-49 | -8.615850e-47 |
| Msa0603410 | Msa1434130 | 0.810759 | 9.824721e-51 | -8.615850e-47 |
| Msa0603410 | Msa1435100 | 0.802150 | 6.430941e-49 | -8.615850e-47 |
| Msa0603410 | Msa1439730 | 0.811063 | 8.442402e-51 | -8.615850e-47 |
| Msa0603410 | Msa1442260 | 0.810457 | 1.141643e-50 | -8.615850e-47 |
| Msa0603410 | Msa1447170 | 0.863052 | 3.278566e-64 | -8.615850e-47 |
| Msa0127680 | Msa0603410 | 0.804868 | 1.756983e-49 | -8.615850e-47 |
| Msa0159590 | Msa0603410 | 0.815803 | 7.666818e-52 | -8.615850e-47 |
| Msa0160160 | Msa0603410 | 0.806288 | 8.846537e-50 | -8.615850e-47 |
| Msa0160170 | Msa0603410 | 0.805308 | 1.421403e-49 | -8.615850e-47 |
| Msa0165830 | Msa0603410 | 0.800109 | 1.681213e-48 | -8.615850e-47 |
| Msa0170070 | Msa0603410 | 0.811470 | 6.888251e-51 | -8.615850e-47 |
| Msa0172510 | Msa0603410 | 0.812104 | 5.014056e-51 | -8.615850e-47 |
| Msa0186360 | Msa0603410 | 0.801507 | 8.713691e-49 | -8.615850e-47 |
| Msa0373170 | Msa0603410 | 0.822610 | 2.160919e-53 | -8.615850e-47 |
| Msa0382230 | Msa0603410 | 0.813689 | 2.253432e-51 | -8.615850e-47 |
| Msa0412130 | Msa0603410 | 0.826246 | 3.014646e-54 | -8.615850e-47 |
| Msa0421750 | Msa0603410 | 0.826433 | 2.720085e-54 | -8.615850e-47 |
| Msa0433760 | Msa0603410 | 0.823523 | 1.323416e-53 | -8.615850e-47 |
| Msa0456670 | Msa0603410 | 0.821756 | 3.408396e-53 | -8.615850e-47 |
| Msa0467690 | Msa0603410 | 0.821780 | 3.366414e-53 | -8.615850e-47 |
| Msa0477630 | Msa0603410 | 0.820401 | 6.995184e-53 | -8.615850e-47 |
| Msa0320250 | Msa0603410 | 0.827832 | 1.258037e-54 | -8.615850e-47 |
| Msa0320270 | Msa0603410 | 0.824108 | 9.649582e-54 | -8.615850e-47 |
| Msa0320290 | Msa0603410 | 0.834395 | 3.072186e-56 | -8.615850e-47 |
| Msa0506540 | Msa0603410 | 0.800099 | 1.689348e-48 | -8.615850e-47 |
| Msa0507020 | Msa0603410 | 0.829168 | 5.986119e-55 | -8.615850e-47 |
| Msa0514020 | Msa0603410 | 0.821679 | 3.550955e-53 | -8.615850e-47 |
| Msa0520680 | Msa0603410 | 0.810950 | 8.934286e-51 | -8.615850e-47 |
| Msa0521680 | Msa0603410 | 0.813338 | 2.691773e-51 | -8.615850e-47 |
| Msa0523380 | Msa0603410 | 0.805301 | 1.426348e-49 | -8.615850e-47 |
| Msa0548000 | Msa0603410 | 0.876849 | 1.006526e-68 | -8.615850e-47 |
| Msa0561560 | Msa0603410 | 0.820600 | 6.295091e-53 | -8.615850e-47 |
| Msa0563900 | Msa0603410 | 0.800186 | 1.621720e-48 | -8.615850e-47 |
| Msa0572830 | Msa0603410 | 0.805812 | 1.113966e-49 | -8.615850e-47 |
| Msa0577280 | Msa0603410 | 0.810576 | 1.076042e-50 | -8.615850e-47 |
| Msa0577330 | Msa0603410 | 0.813980 | 1.945077e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0603410 | MtrunA17_Chr4g0031671 | 91.781 | 146 | 2 | 1 | 1 | 136 | 1 | 146 | 1.41e-88 | 254 |
| Msa0603410 | MtrunA17_Chr4g0031631 | 91.781 | 146 | 2 | 1 | 1 | 136 | 1 | 146 | 1.41e-88 | 254 |
| Msa0603410 | MtrunA17_Chr4g0030941 | 91.781 | 146 | 2 | 1 | 1 | 136 | 1 | 146 | 1.41e-88 | 254 |
| Msa0603410 | MtrunA17_Chr4g0035061 | 91.781 | 146 | 2 | 1 | 1 | 136 | 1 | 146 | 1.73e-88 | 254 |
| Msa0603410 | MtrunA17_Chr4g0035631 | 91.781 | 146 | 2 | 1 | 1 | 136 | 1 | 146 | 1.73e-88 | 254 |
| Msa0603410 | MtrunA17_Chr4g0031061 | 91.096 | 146 | 3 | 1 | 1 | 136 | 1 | 146 | 8.40e-88 | 253 |
| Msa0603410 | MtrunA17_Chr4g0032321 | 91.096 | 146 | 3 | 1 | 1 | 136 | 1 | 146 | 8.40e-88 | 253 |
| Msa0603410 | MtrunA17_Chr4g0035071 | 90.411 | 146 | 4 | 1 | 1 | 136 | 1 | 146 | 7.45e-87 | 250 |
| Msa0603410 | MtrunA17_Chr4g0030981 | 91.096 | 146 | 2 | 2 | 1 | 136 | 1 | 145 | 2.30e-86 | 249 |
| Msa0603410 | MtrunA17_Chr4g0030951 | 91.549 | 142 | 2 | 1 | 5 | 136 | 4 | 145 | 1.27e-85 | 247 |
| Msa0603410 | MtrunA17_Chr4g0046191 | 87.671 | 146 | 3 | 2 | 1 | 136 | 1 | 141 | 5.51e-76 | 223 |
| Msa0603410 | MtrunA17_Chr1g0197451 | 82.192 | 146 | 5 | 4 | 1 | 136 | 1 | 135 | 1.25e-65 | 196 |
| Msa0603410 | MtrunA17_Chr1g0198251 | 81.507 | 146 | 6 | 4 | 1 | 136 | 1 | 135 | 4.49e-65 | 195 |
| Msa0603410 | MtrunA17_Chr1g0182361 | 98.734 | 79 | 1 | 0 | 58 | 136 | 56 | 134 | 1.81e-52 | 163 |
| Msa0603410 | MtrunA17_Chr7g0263031 | 98.734 | 79 | 1 | 0 | 58 | 136 | 58 | 136 | 2.09e-52 | 163 |
| Msa0603410 | MtrunA17_Chr2g0320511 | 65.385 | 78 | 27 | 0 | 58 | 135 | 145 | 222 | 4.21e-32 | 114 |
| Msa0603410 | MtrunA17_Chr4g0031051 | 90.196 | 51 | 5 | 0 | 76 | 126 | 1 | 51 | 6.71e-27 | 95.9 |
| Msa0603410 | MtrunA17_Chr8g0368781 | 58.065 | 93 | 21 | 4 | 15 | 97 | 4 | 88 | 1.31e-22 | 86.3 |
| Msa0603410 | MtrunA17_Chr7g0228831 | 93.103 | 29 | 2 | 0 | 58 | 86 | 53 | 81 | 1.76e-13 | 62.8 |
| Msa0603410 | MtrunA17_Chr4g0075141 | 37.647 | 85 | 51 | 2 | 58 | 141 | 38 | 121 | 9.38e-11 | 56.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0603410 | AT3G45980.1 | 81.879 | 149 | 13 | 3 | 1 | 136 | 1 | 148 | 1.57e-70 | 209 |
| Msa0603410 | AT2G28720.1 | 79.866 | 149 | 17 | 2 | 1 | 136 | 1 | 149 | 2.13e-68 | 204 |
| Msa0603410 | AT1G07790.1 | 77.397 | 146 | 23 | 3 | 1 | 136 | 1 | 146 | 1.27e-66 | 199 |
| Msa0603410 | AT5G59910.1 | 83.582 | 134 | 9 | 3 | 13 | 136 | 18 | 148 | 3.48e-64 | 193 |
| Msa0603410 | AT3G46030.1 | 86.290 | 124 | 6 | 2 | 23 | 136 | 21 | 143 | 1.27e-62 | 189 |
| Msa0603410 | AT2G37470.1 | 74.483 | 145 | 20 | 4 | 1 | 136 | 1 | 137 | 1.23e-59 | 181 |
| Msa0603410 | AT3G53650.1 | 77.083 | 144 | 17 | 3 | 1 | 136 | 1 | 136 | 3.19e-59 | 181 |
| Msa0603410 | AT5G02570.1 | 73.288 | 146 | 13 | 2 | 1 | 136 | 1 | 130 | 2.04e-58 | 178 |
| Msa0603410 | AT3G09480.1 | 78.333 | 120 | 20 | 1 | 23 | 136 | 5 | 124 | 8.53e-56 | 171 |
| Msa0603410 | AT5G22880.1 | 79.720 | 143 | 17 | 3 | 4 | 136 | 3 | 143 | 8.25e-54 | 167 |
| Msa0603410 | AT1G08170.1 | 58.889 | 90 | 36 | 1 | 46 | 135 | 147 | 235 | 8.31e-34 | 119 |
Find 48 sgRNAs with CRISPR-Local
Find 53 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATGATAATTGTGGAATTTAA+TGG | 0.299216 | 4_2:+47922757 | Msa0603410:CDS |
| GGAAGCTTCTTCCCTGCCTT+TGG | 0.302255 | 4_2:-47922279 | None:intergenic |
| CTTCTCCGCCGGTGCTTTCT+CGG | 0.338411 | 4_2:-47922253 | None:intergenic |
| ACTTGTTCTTCCCGGAGAAT+TGG | 0.361228 | 4_2:+47922554 | Msa0603410:CDS |
| GCTGGCTTCTTCTCTCCCTT+TGG | 0.368494 | 4_2:-47922192 | None:intergenic |
| GGCAGCAGAACCACCTTCCT+TGG | 0.388400 | 4_2:-47922301 | None:intergenic |
| GCTGTCAGACTTGTTCTTCC+CGG | 0.392312 | 4_2:+47922546 | Msa0603410:CDS |
| GCCTTTGGCTTCTTCTCCGC+CGG | 0.406575 | 4_2:-47922264 | None:intergenic |
| AGCATGCTTGGCCAATTCTC+CGG | 0.411273 | 4_2:-47922565 | None:intergenic |
| AGTAAACTTGGTCACAGCTT+TGG | 0.428250 | 4_2:-47922601 | None:intergenic |
| ATTTCCCTGGAAGTGATTGT+TGG | 0.430207 | 4_2:-47922516 | None:intergenic |
| GTGGACTTCTTCTCCTCTGC+GGG | 0.437960 | 4_2:-47922225 | None:intergenic |
| AAGGAAGGTGGTTCTGCTGC+CGG | 0.454682 | 4_2:+47922303 | Msa0603410:CDS |
| GCGGAGAAGAAGCCAAAGGC+AGG | 0.456047 | 4_2:+47922267 | Msa0603410:CDS |
| ACCCTCAGAAACAGCATGCT+TGG | 0.462043 | 4_2:-47922577 | None:intergenic |
| TTGCTTGAGATACCAATGTC+CGG | 0.465790 | 4_2:-47922405 | None:intergenic |
| TCTGCGGGTTTCTTCTCCGC+TGG | 0.466008 | 4_2:-47922210 | None:intergenic |
| TCTCTTCTTCTTCTTGTCTC+CGG | 0.474508 | 4_2:-47922322 | None:intergenic |
| AGAAGCCAACAATCACTTCC+AGG | 0.480188 | 4_2:+47922511 | Msa0603410:CDS |
| CGCCGGTGCTTTCTCGGCGA+CGG | 0.489239 | 4_2:-47922247 | None:intergenic |
| GACAGCAGTCTGAATTTCCC+TGG | 0.496873 | 4_2:-47922529 | None:intergenic |
| CAAATTCTCAATGGCACCAA+AGG | 0.499774 | 4_2:+47922176 | None:intergenic |
| GCAGCAGAACCACCTTCCTT+GGG | 0.503667 | 4_2:-47922300 | None:intergenic |
| GCATGCTTGGCCAATTCTCC+GGG | 0.507742 | 4_2:-47922564 | None:intergenic |
| TGCTTGAGATACCAATGTCC+GGG | 0.518516 | 4_2:-47922404 | None:intergenic |
| AATCTAAGAACTAGTAAACT+TGG | 0.523030 | 4_2:-47922613 | None:intergenic |
| TGTAATGAAGTCATGCAATC+TGG | 0.526440 | 4_2:+47922719 | Msa0603410:CDS |
| TGGTATCTCAAGCAAAGCCA+TGG | 0.533917 | 4_2:+47922413 | Msa0603410:CDS |
| GCCAAGCATGCTGTTTCTGA+GGG | 0.538001 | 4_2:+47922576 | Msa0603410:CDS |
| GGCCAAGCATGCTGTTTCTG+AGG | 0.538906 | 4_2:+47922575 | Msa0603410:CDS |
| AAATTCTCAATGGCACCAAA+GGG | 0.562232 | 4_2:+47922177 | None:intergenic |
| CGGAGAAGAAGCCAAAGGCA+GGG | 0.564014 | 4_2:+47922268 | Msa0603410:CDS |
| AAACAAGTTCACCCGGACAT+TGG | 0.567029 | 4_2:+47922393 | Msa0603410:CDS |
| CACCGTCGCCGAGAAAGCAC+CGG | 0.573263 | 4_2:+47922245 | Msa0603410:CDS |
| GGGAAGAAGCTTCCCAAGGA+AGG | 0.587709 | 4_2:+47922288 | Msa0603410:CDS |
| ACCGGCGGAGAAGAAGCCAA+AGG | 0.599875 | 4_2:+47922263 | Msa0603410:CDS |
| GGTTCTTAAACAAGTTCACC+CGG | 0.632369 | 4_2:+47922386 | Msa0603410:intron |
| AAGAAGCTTCCCAAGGAAGG+TGG | 0.636715 | 4_2:+47922291 | Msa0603410:CDS |
| GGCAGGGAAGAAGCTTCCCA+AGG | 0.638223 | 4_2:+47922284 | Msa0603410:CDS |
| CGTCGCCGAGAAAGCACCGG+CGG | 0.638962 | 4_2:+47922248 | Msa0603410:CDS |
| GAAGCCAACAATCACTTCCA+GGG | 0.639164 | 4_2:+47922512 | Msa0603410:CDS |
| AAAGGGAGAGAAGAAGCCAG+CGG | 0.642633 | 4_2:+47922194 | Msa0603410:CDS |
| CGGTGCTTTCTCGGCGACGG+TGG | 0.648960 | 4_2:-47922244 | None:intergenic |
| GGTATCTCAAGCAAAGCCAT+GGG | 0.659631 | 4_2:+47922414 | Msa0603410:CDS |
| ATGAAGTCATGCAATCTGGT+TGG | 0.660641 | 4_2:+47922723 | Msa0603410:CDS |
| GGTGGACTTCTTCTCCTCTG+CGG | 0.668086 | 4_2:-47922226 | None:intergenic |
| AGCGGAGAAGAAACCCGCAG+AGG | 0.676003 | 4_2:+47922212 | Msa0603410:CDS |
| GAAACTGTTCATGATACCCA+TGG | 0.683953 | 4_2:-47922430 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATGATAATTGTGGAATTTAA+TGG | + | chr4_2:47922757-47922776 | Msa0603410:CDS | 20.0% |
| ! | AATCTAAGAACTAGTAAACT+TGG | - | chr4_2:47922616-47922635 | None:intergenic | 25.0% |
| !! | TCTTAGATTTGTAACACTTT+TGG | + | chr4_2:47922627-47922646 | Msa0603410:intron | 25.0% |
| ! | CTGCTAATTAAAATTACCAA+TGG | - | chr4_2:47922673-47922692 | None:intergenic | 25.0% |
| !! | TCTTTTGTGTATGATAATTG+TGG | + | chr4_2:47922747-47922766 | Msa0603410:CDS | 25.0% |
| ATACAAGATCTACATCTTCA+AGG | + | chr4_2:47922365-47922384 | Msa0603410:intron | 30.0% | |
| !! | GATTTGTAACACTTTTGGTT+TGG | + | chr4_2:47922632-47922651 | Msa0603410:intron | 30.0% |
| !!! | TTTGGTTTGGATCTAGTTTT+AGG | + | chr4_2:47922645-47922664 | Msa0603410:intron | 30.0% |
| !!! | GATCTAGTTTTAGGAACCAT+TGG | + | chr4_2:47922654-47922673 | Msa0603410:intron | 35.0% |
| TGTAATGAAGTCATGCAATC+TGG | + | chr4_2:47922719-47922738 | Msa0603410:CDS | 35.0% | |
| TCTCTTCTTCTTCTTGTCTC+CGG | - | chr4_2:47922325-47922344 | None:intergenic | 40.0% | |
| GGTTCTTAAACAAGTTCACC+CGG | + | chr4_2:47922386-47922405 | Msa0603410:intron | 40.0% | |
| TTGCTTGAGATACCAATGTC+CGG | - | chr4_2:47922408-47922427 | None:intergenic | 40.0% | |
| GAAACTGTTCATGATACCCA+TGG | - | chr4_2:47922433-47922452 | None:intergenic | 40.0% | |
| ATTTCCCTGGAAGTGATTGT+TGG | - | chr4_2:47922519-47922538 | None:intergenic | 40.0% | |
| AGTAAACTTGGTCACAGCTT+TGG | - | chr4_2:47922604-47922623 | None:intergenic | 40.0% | |
| ATGAAGTCATGCAATCTGGT+TGG | + | chr4_2:47922723-47922742 | Msa0603410:CDS | 40.0% | |
| AAACAAGTTCACCCGGACAT+TGG | + | chr4_2:47922393-47922412 | Msa0603410:CDS | 45.0% | |
| TGCTTGAGATACCAATGTCC+GGG | - | chr4_2:47922407-47922426 | None:intergenic | 45.0% | |
| TGGTATCTCAAGCAAAGCCA+TGG | + | chr4_2:47922413-47922432 | Msa0603410:CDS | 45.0% | |
| GGTATCTCAAGCAAAGCCAT+GGG | + | chr4_2:47922414-47922433 | Msa0603410:CDS | 45.0% | |
| AGAAGCCAACAATCACTTCC+AGG | + | chr4_2:47922511-47922530 | Msa0603410:CDS | 45.0% | |
| GAAGCCAACAATCACTTCCA+GGG | + | chr4_2:47922512-47922531 | Msa0603410:CDS | 45.0% | |
| ACTTGTTCTTCCCGGAGAAT+TGG | + | chr4_2:47922554-47922573 | Msa0603410:CDS | 45.0% | |
| AAAGGGAGAGAAGAAGCCAG+CGG | + | chr4_2:47922194-47922213 | Msa0603410:CDS | 50.0% | |
| AAGAAGCTTCCCAAGGAAGG+TGG | + | chr4_2:47922291-47922310 | Msa0603410:CDS | 50.0% | |
| GACAGCAGTCTGAATTTCCC+TGG | - | chr4_2:47922532-47922551 | None:intergenic | 50.0% | |
| ! | GCTGTCAGACTTGTTCTTCC+CGG | + | chr4_2:47922546-47922565 | Msa0603410:CDS | 50.0% |
| AGCATGCTTGGCCAATTCTC+CGG | - | chr4_2:47922568-47922587 | None:intergenic | 50.0% | |
| !! | GCCAAGCATGCTGTTTCTGA+GGG | + | chr4_2:47922576-47922595 | Msa0603410:CDS | 50.0% |
| ACCCTCAGAAACAGCATGCT+TGG | - | chr4_2:47922580-47922599 | None:intergenic | 50.0% | |
| ! | GCTGGCTTCTTCTCTCCCTT+TGG | - | chr4_2:47922195-47922214 | None:intergenic | 55.0% |
| GTGGACTTCTTCTCCTCTGC+GGG | - | chr4_2:47922228-47922247 | None:intergenic | 55.0% | |
| ! | GGTGGACTTCTTCTCCTCTG+CGG | - | chr4_2:47922229-47922248 | None:intergenic | 55.0% |
| CGGAGAAGAAGCCAAAGGCA+GGG | + | chr4_2:47922268-47922287 | Msa0603410:CDS | 55.0% | |
| GGAAGCTTCTTCCCTGCCTT+TGG | - | chr4_2:47922282-47922301 | None:intergenic | 55.0% | |
| GGGAAGAAGCTTCCCAAGGA+AGG | + | chr4_2:47922288-47922307 | Msa0603410:CDS | 55.0% | |
| GCAGCAGAACCACCTTCCTT+GGG | - | chr4_2:47922303-47922322 | None:intergenic | 55.0% | |
| ! | AAGGAAGGTGGTTCTGCTGC+CGG | + | chr4_2:47922303-47922322 | Msa0603410:CDS | 55.0% |
| GCATGCTTGGCCAATTCTCC+GGG | - | chr4_2:47922567-47922586 | None:intergenic | 55.0% | |
| !! | GGCCAAGCATGCTGTTTCTG+AGG | + | chr4_2:47922575-47922594 | Msa0603410:CDS | 55.0% |
| TCTGCGGGTTTCTTCTCCGC+TGG | - | chr4_2:47922213-47922232 | None:intergenic | 60.0% | |
| AGCGGAGAAGAAACCCGCAG+AGG | + | chr4_2:47922212-47922231 | Msa0603410:CDS | 60.0% | |
| CTTCTCCGCCGGTGCTTTCT+CGG | - | chr4_2:47922256-47922275 | None:intergenic | 60.0% | |
| ACCGGCGGAGAAGAAGCCAA+AGG | + | chr4_2:47922263-47922282 | Msa0603410:CDS | 60.0% | |
| ! | GCCTTTGGCTTCTTCTCCGC+CGG | - | chr4_2:47922267-47922286 | None:intergenic | 60.0% |
| GCGGAGAAGAAGCCAAAGGC+AGG | + | chr4_2:47922267-47922286 | Msa0603410:CDS | 60.0% | |
| GGCAGGGAAGAAGCTTCCCA+AGG | + | chr4_2:47922284-47922303 | Msa0603410:CDS | 60.0% | |
| GGCAGCAGAACCACCTTCCT+TGG | - | chr4_2:47922304-47922323 | None:intergenic | 60.0% | |
| ! | CACCGTCGCCGAGAAAGCAC+CGG | + | chr4_2:47922245-47922264 | Msa0603410:CDS | 65.0% |
| CGGTGCTTTCTCGGCGACGG+TGG | - | chr4_2:47922247-47922266 | None:intergenic | 70.0% | |
| CGCCGGTGCTTTCTCGGCGA+CGG | - | chr4_2:47922250-47922269 | None:intergenic | 70.0% | |
| !! | CGTCGCCGAGAAAGCACCGG+CGG | + | chr4_2:47922248-47922267 | Msa0603410:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_2 | gene | 47922186 | 47922784 | 47922186 | ID=Msa0603410;Name=Msa0603410 |
| chr4_2 | mRNA | 47922186 | 47922784 | 47922186 | ID=Msa0603410-mRNA-1;Parent=Msa0603410;Name=Msa0603410-mRNA-1;_AED=0.40;_eAED=0.40;_QI=0|0|0.33|1|0|0|3|8|158 |
| chr4_2 | exon | 47922186 | 47922356 | 47922186 | ID=Msa0603410-mRNA-1:exon:10995;Parent=Msa0603410-mRNA-1 |
| chr4_2 | exon | 47922387 | 47922624 | 47922387 | ID=Msa0603410-mRNA-1:exon:10996;Parent=Msa0603410-mRNA-1 |
| chr4_2 | exon | 47922709 | 47922784 | 47922709 | ID=Msa0603410-mRNA-1:exon:10997;Parent=Msa0603410-mRNA-1 |
| chr4_2 | CDS | 47922186 | 47922356 | 47922186 | ID=Msa0603410-mRNA-1:cds;Parent=Msa0603410-mRNA-1 |
| chr4_2 | CDS | 47922387 | 47922624 | 47922387 | ID=Msa0603410-mRNA-1:cds;Parent=Msa0603410-mRNA-1 |
| chr4_2 | CDS | 47922709 | 47922776 | 47922709 | ID=Msa0603410-mRNA-1:cds;Parent=Msa0603410-mRNA-1 |
| chr4_2 | three_prime_UTR | 47922777 | 47922784 | 47922777 | ID=Msa0603410-mRNA-1:three_prime_utr;Parent=Msa0603410-mRNA-1 |
| Gene Sequence |
| Protein sequence |
