Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0871120 | Msa0893710 | 0.812135 | 4.936127e-51 | -8.615850e-47 |
| Msa0871120 | Msa1296220 | 0.804193 | 2.429327e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 36 sgRNAs with CRISPR-Local
Find 228 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTACAATTTGGTCCCTGTTC+TGG | 0.243585 | 6_1:+5977602 | Msa0871120:CDS |
| GGACTGGTTCTTTGTGTATC+AGG | 0.273956 | 6_1:+5977508 | Msa0871120:CDS |
| GCTTCTTGTGTTATTATTGC+AGG | 0.301953 | 6_1:+5977558 | Msa0871120:CDS |
| GGATTATTTATTTGTTTGCT+TGG | 0.318601 | 6_1:+5977680 | Msa0871120:intron |
| CCGAAGTCAACTGTGGTATT+CGG | 0.333982 | 6_1:+5977168 | Msa0871120:CDS |
| GTGTTATTATTGCAGGTGTT+GGG | 0.334030 | 6_1:+5977565 | Msa0871120:CDS |
| AGTTGACTCGGTAATACTTC+TGG | 0.348700 | 6_1:-5977211 | None:intergenic |
| CGAAGTCAACTGTGGTATTC+GGG | 0.356352 | 6_1:+5977169 | Msa0871120:CDS |
| GCTAGTTGGTTGTGTGCCTC+TGG | 0.358218 | 6_1:+5977448 | Msa0871120:intron |
| AGTTGAAAGGGAAGATGAAT+TGG | 0.385516 | 6_1:+5976679 | Msa0871120:CDS |
| CGAGTGCAGACTGCGTTGTT+TGG | 0.391359 | 6_1:+5977704 | Msa0871120:CDS |
| GATTATTTATTTGTTTGCTT+GGG | 0.427023 | 6_1:+5977681 | Msa0871120:CDS |
| TGAACACCCTACCTCTTAAA+CGG | 0.432231 | 6_1:-5977818 | None:intergenic |
| TGTGTTATTATTGCAGGTGT+TGG | 0.434739 | 6_1:+5977564 | Msa0871120:CDS |
| ATGACCTTAGCATTTCTTGA+AGG | 0.440523 | 6_1:-5976704 | None:intergenic |
| CTTTGTGTATCAGGGAAGTA+AGG | 0.443035 | 6_1:+5977517 | Msa0871120:CDS |
| GATACTTTGCAGAAGTTGAA+AGG | 0.459351 | 6_1:+5976666 | Msa0871120:intron |
| ACCGTTGAAAACCGTTTAAG+AGG | 0.461848 | 6_1:+5977807 | Msa0871120:CDS |
| AATCTAACTCCTCTGTTCCC+TGG | 0.471521 | 6_1:-5977768 | None:intergenic |
| GGAGAGAGTGACGGCGGCGA+GGG | 0.501683 | 6_1:-5976013 | None:intergenic |
| AAGTATTACCGAGTCAACTT+TGG | 0.513118 | 6_1:+5977215 | Msa0871120:CDS |
| ATACTTTGCAGAAGTTGAAA+GGG | 0.515913 | 6_1:+5976667 | Msa0871120:intron |
| GACTGGTTCTTTGTGTATCA+GGG | 0.527957 | 6_1:+5977509 | Msa0871120:CDS |
| GACGGCGGCGAGGGTGAGAT+CGG | 0.529397 | 6_1:-5976004 | None:intergenic |
| TGTTATTATTGCAGGTGTTG+GGG | 0.531942 | 6_1:+5977566 | Msa0871120:CDS |
| GGCTCCTTCAAGAAATGCTA+AGG | 0.550241 | 6_1:+5976700 | Msa0871120:CDS |
| CCGAATACCACAGTTGACTT+CGG | 0.561162 | 6_1:-5977168 | None:intergenic |
| AAGGATGTGTTGTCGTCACA+TGG | 0.601150 | 6_1:+5977536 | Msa0871120:CDS |
| ACTTCTGGAGCGATATATGT+CGG | 0.610287 | 6_1:-5977196 | None:intergenic |
| GAGTAATACCAAAGTTGACT+CGG | 0.633993 | 6_1:-5977223 | None:intergenic |
| TGGAGAGAGTGACGGCGGCG+AGG | 0.637500 | 6_1:-5976014 | None:intergenic |
| CGTACAAGACAGCTGTCCAG+AGG | 0.685542 | 6_1:-5977464 | None:intergenic |
| ACTCTCTCCATCCATCACAA+AGG | 0.691532 | 6_1:+5976027 | Msa0871120:CDS |
| GTGATGGATGGAGAGAGTGA+CGG | 0.700238 | 6_1:-5976022 | None:intergenic |
| TTCACAACCGAAGTCAACTG+TGG | 0.702947 | 6_1:+5977161 | Msa0871120:CDS |
| ATGGATGGAGAGAGTGACGG+CGG | 0.786163 | 6_1:-5976019 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATATTGAAAAATTAATTAGA+AGG | - | chr6_1:5977042-5977061 | None:intergenic | 10.0% |
| !! | CTTAATTAAAATTATTAGTT+AGG | - | chr6_1:5977316-5977335 | None:intergenic | 10.0% |
| !!! | ACTAATAATTTTAATTAAGA+TGG | + | chr6_1:5977317-5977336 | Msa0871120:intron | 10.0% |
| !! | ATATTGAAAAATTAATTAGA+AGG | - | chr6_1:5977042-5977061 | None:intergenic | 10.0% |
| !! | CTTAATTAAAATTATTAGTT+AGG | - | chr6_1:5977316-5977335 | None:intergenic | 10.0% |
| !!! | ACTAATAATTTTAATTAAGA+TGG | + | chr6_1:5977317-5977336 | Msa0871120:intron | 10.0% |
| !! | ATTTCATTAAAACAAATCAA+AGG | - | chr6_1:5976124-5976143 | None:intergenic | 15.0% |
| !! | GTTAGATTTAAACAATATTT+CGG | + | chr6_1:5976425-5976444 | Msa0871120:intron | 15.0% |
| !! | TTAGATTTAAACAATATTTC+GGG | + | chr6_1:5976426-5976445 | Msa0871120:intron | 15.0% |
| !! | TGTAATATTGCAAAAAATAT+TGG | - | chr6_1:5976456-5976475 | None:intergenic | 15.0% |
| !!! | TACAATTTTAAGACAATTTT+AGG | + | chr6_1:5976472-5976491 | Msa0871120:intron | 15.0% |
| !!! | ACAATTTTAAGACAATTTTA+GGG | + | chr6_1:5976473-5976492 | Msa0871120:intron | 15.0% |
| !!! | TTTTTAATATTCTAAATTGC+TGG | + | chr6_1:5976601-5976620 | Msa0871120:intron | 15.0% |
| !!! | TTTTAATATTCTAAATTGCT+GGG | + | chr6_1:5976602-5976621 | Msa0871120:intron | 15.0% |
| !!! | AATAATCATCATACAATTTT+TGG | - | chr6_1:5976805-5976824 | None:intergenic | 15.0% |
| !! | AAATAAATAATCCTACAAAA+TGG | - | chr6_1:5977673-5977692 | None:intergenic | 15.0% |
| !! | ATTTCATTAAAACAAATCAA+AGG | - | chr6_1:5976124-5976143 | None:intergenic | 15.0% |
| !! | GTTAGATTTAAACAATATTT+CGG | + | chr6_1:5976425-5976444 | Msa0871120:intron | 15.0% |
| !! | TTAGATTTAAACAATATTTC+GGG | + | chr6_1:5976426-5976445 | Msa0871120:intron | 15.0% |
| !! | TGTAATATTGCAAAAAATAT+TGG | - | chr6_1:5976456-5976475 | None:intergenic | 15.0% |
| !!! | TACAATTTTAAGACAATTTT+AGG | + | chr6_1:5976472-5976491 | Msa0871120:intron | 15.0% |
| !!! | ACAATTTTAAGACAATTTTA+GGG | + | chr6_1:5976473-5976492 | Msa0871120:intron | 15.0% |
| !!! | TTTTTAATATTCTAAATTGC+TGG | + | chr6_1:5976601-5976620 | Msa0871120:intron | 15.0% |
| !!! | TTTTAATATTCTAAATTGCT+GGG | + | chr6_1:5976602-5976621 | Msa0871120:intron | 15.0% |
| !!! | AATAATCATCATACAATTTT+TGG | - | chr6_1:5976805-5976824 | None:intergenic | 15.0% |
| !! | AAATAAATAATCCTACAAAA+TGG | - | chr6_1:5977673-5977692 | None:intergenic | 15.0% |
| !!! | TGATAGATCAAATTGATTTA+TGG | - | chr6_1:5976069-5976088 | None:intergenic | 20.0% |
| !! | AATCAATTTGATCTATCATT+TGG | + | chr6_1:5976071-5976090 | Msa0871120:intron | 20.0% |
| !! | ATCAATTTGATCTATCATTT+GGG | + | chr6_1:5976072-5976091 | Msa0871120:intron | 20.0% |
| !! | TTAATGAAATTGATACTTCT+AGG | + | chr6_1:5976134-5976153 | Msa0871120:intron | 20.0% |
| !! | TAATGAAATTGATACTTCTA+GGG | + | chr6_1:5976135-5976154 | Msa0871120:intron | 20.0% |
| !! | TTTGATATCCATGAAAAAAT+AGG | + | chr6_1:5976167-5976186 | Msa0871120:intron | 20.0% |
| !!! | TTCTTAATCCTATTTTTTCA+TGG | - | chr6_1:5976178-5976197 | None:intergenic | 20.0% |
| !!! | ATTTTTCAATATCATTCTCT+TGG | + | chr6_1:5977050-5977069 | Msa0871120:intron | 20.0% |
| !!! | TAATTAAGTTTTAAGCGTTA+TGG | + | chr6_1:5977087-5977106 | Msa0871120:intron | 20.0% |
| !! | ATATCTTAGAATATGATTGA+TGG | + | chr6_1:5977112-5977131 | Msa0871120:intron | 20.0% |
| !! | GCTATCAAAATATTATATGT+CGG | - | chr6_1:5977248-5977267 | None:intergenic | 20.0% |
| !! | GATTATTTATTTGTTTGCTT+GGG | + | chr6_1:5977681-5977700 | Msa0871120:CDS | 20.0% |
| !!! | TGATAGATCAAATTGATTTA+TGG | - | chr6_1:5976069-5976088 | None:intergenic | 20.0% |
| !! | AATCAATTTGATCTATCATT+TGG | + | chr6_1:5976071-5976090 | Msa0871120:intron | 20.0% |
| !! | ATCAATTTGATCTATCATTT+GGG | + | chr6_1:5976072-5976091 | Msa0871120:intron | 20.0% |
| !! | TTAATGAAATTGATACTTCT+AGG | + | chr6_1:5976134-5976153 | Msa0871120:intron | 20.0% |
| !! | TAATGAAATTGATACTTCTA+GGG | + | chr6_1:5976135-5976154 | Msa0871120:intron | 20.0% |
| !! | TTTGATATCCATGAAAAAAT+AGG | + | chr6_1:5976167-5976186 | Msa0871120:intron | 20.0% |
| !!! | TTCTTAATCCTATTTTTTCA+TGG | - | chr6_1:5976178-5976197 | None:intergenic | 20.0% |
| !!! | ATTTTTCAATATCATTCTCT+TGG | + | chr6_1:5977050-5977069 | Msa0871120:intron | 20.0% |
| !!! | TAATTAAGTTTTAAGCGTTA+TGG | + | chr6_1:5977087-5977106 | Msa0871120:intron | 20.0% |
| !! | ATATCTTAGAATATGATTGA+TGG | + | chr6_1:5977112-5977131 | Msa0871120:intron | 20.0% |
| !! | GCTATCAAAATATTATATGT+CGG | - | chr6_1:5977248-5977267 | None:intergenic | 20.0% |
| !! | GATTATTTATTTGTTTGCTT+GGG | + | chr6_1:5977681-5977700 | Msa0871120:CDS | 20.0% |
| ! | TCTGTTCAATTCTTGAAATT+AGG | + | chr6_1:5976336-5976355 | Msa0871120:intron | 25.0% |
| ! | CTGTTCAATTCTTGAAATTA+GGG | + | chr6_1:5976337-5976356 | Msa0871120:intron | 25.0% |
| ! | GGATTATATAAATGAACTAG+AGG | - | chr6_1:5976733-5976752 | None:intergenic | 25.0% |
| ! | AAGACATAGTATATTACAGA+TGG | - | chr6_1:5976852-5976871 | None:intergenic | 25.0% |
| !! | TCTATTTTCACTCTAATGAA+AGG | + | chr6_1:5977271-5977290 | Msa0871120:intron | 25.0% |
| ! | CAATAGAAAACTTACAAATG+CGG | - | chr6_1:5977422-5977441 | None:intergenic | 25.0% |
| !! | TGTAAGTTTTCTATTGTTGT+TGG | + | chr6_1:5977426-5977445 | Msa0871120:intron | 25.0% |
| !!! | AGTACTTTTTGTGTATCATT+TGG | + | chr6_1:5977645-5977664 | Msa0871120:intron | 25.0% |
| ! | GGATTATTTATTTGTTTGCT+TGG | + | chr6_1:5977680-5977699 | Msa0871120:intron | 25.0% |
| ! | TCTGTTCAATTCTTGAAATT+AGG | + | chr6_1:5976336-5976355 | Msa0871120:intron | 25.0% |
| ! | CTGTTCAATTCTTGAAATTA+GGG | + | chr6_1:5976337-5976356 | Msa0871120:intron | 25.0% |
| ! | GGATTATATAAATGAACTAG+AGG | - | chr6_1:5976733-5976752 | None:intergenic | 25.0% |
| ! | AAGACATAGTATATTACAGA+TGG | - | chr6_1:5976852-5976871 | None:intergenic | 25.0% |
| !! | TCTATTTTCACTCTAATGAA+AGG | + | chr6_1:5977271-5977290 | Msa0871120:intron | 25.0% |
| ! | CAATAGAAAACTTACAAATG+CGG | - | chr6_1:5977422-5977441 | None:intergenic | 25.0% |
| !! | TGTAAGTTTTCTATTGTTGT+TGG | + | chr6_1:5977426-5977445 | Msa0871120:intron | 25.0% |
| !!! | AGTACTTTTTGTGTATCATT+TGG | + | chr6_1:5977645-5977664 | Msa0871120:intron | 25.0% |
| ! | GGATTATTTATTTGTTTGCT+TGG | + | chr6_1:5977680-5977699 | Msa0871120:intron | 25.0% |
| ! | AAAAATACCTTTGTGATGGA+TGG | - | chr6_1:5976037-5976056 | None:intergenic | 30.0% |
| GAAGAAAAATACCTTTGTGA+TGG | - | chr6_1:5976041-5976060 | None:intergenic | 30.0% | |
| TGATCTATCATTTGGGAATT+AGG | + | chr6_1:5976079-5976098 | Msa0871120:intron | 30.0% | |
| GATCTATCATTTGGGAATTA+GGG | + | chr6_1:5976080-5976099 | Msa0871120:intron | 30.0% | |
| CATTAAAACAAATCAAAGGC+AGG | - | chr6_1:5976120-5976139 | None:intergenic | 30.0% | |
| ! | GAACAGTGAAAACTATTTTC+TGG | + | chr6_1:5976195-5976214 | Msa0871120:intron | 30.0% |
| ATAAGCATGAACATAGTTTC+TGG | + | chr6_1:5976295-5976314 | Msa0871120:intron | 30.0% | |
| ! | TTATGACTTGTGATAGCTAT+TGG | - | chr6_1:5976367-5976386 | None:intergenic | 30.0% |
| GCAATATACCTAAAGCAAAA+AGG | + | chr6_1:5976573-5976592 | Msa0871120:intron | 30.0% | |
| TATACCTAAAGCAAAAAGGT+TGG | + | chr6_1:5976577-5976596 | Msa0871120:intron | 30.0% | |
| ATACCTAAAGCAAAAAGGTT+GGG | + | chr6_1:5976578-5976597 | Msa0871120:intron | 30.0% | |
| ATACTTTGCAGAAGTTGAAA+GGG | + | chr6_1:5976667-5976686 | Msa0871120:intron | 30.0% | |
| TTAAGCAAATGCAAGTGATT+TGG | - | chr6_1:5976754-5976773 | None:intergenic | 30.0% | |
| !!! | TGTTTTAGTGCTCTACAATT+TGG | + | chr6_1:5977590-5977609 | Msa0871120:CDS | 30.0% |
| ! | AAAAATACCTTTGTGATGGA+TGG | - | chr6_1:5976037-5976056 | None:intergenic | 30.0% |
| GAAGAAAAATACCTTTGTGA+TGG | - | chr6_1:5976041-5976060 | None:intergenic | 30.0% | |
| TGATCTATCATTTGGGAATT+AGG | + | chr6_1:5976079-5976098 | Msa0871120:intron | 30.0% | |
| GATCTATCATTTGGGAATTA+GGG | + | chr6_1:5976080-5976099 | Msa0871120:intron | 30.0% | |
| CATTAAAACAAATCAAAGGC+AGG | - | chr6_1:5976120-5976139 | None:intergenic | 30.0% | |
| ! | GAACAGTGAAAACTATTTTC+TGG | + | chr6_1:5976195-5976214 | Msa0871120:intron | 30.0% |
| ATAAGCATGAACATAGTTTC+TGG | + | chr6_1:5976295-5976314 | Msa0871120:intron | 30.0% | |
| ! | TTATGACTTGTGATAGCTAT+TGG | - | chr6_1:5976367-5976386 | None:intergenic | 30.0% |
| GCAATATACCTAAAGCAAAA+AGG | + | chr6_1:5976573-5976592 | Msa0871120:intron | 30.0% | |
| TATACCTAAAGCAAAAAGGT+TGG | + | chr6_1:5976577-5976596 | Msa0871120:intron | 30.0% | |
| ATACCTAAAGCAAAAAGGTT+GGG | + | chr6_1:5976578-5976597 | Msa0871120:intron | 30.0% | |
| ATACTTTGCAGAAGTTGAAA+GGG | + | chr6_1:5976667-5976686 | Msa0871120:intron | 30.0% | |
| TTAAGCAAATGCAAGTGATT+TGG | - | chr6_1:5976754-5976773 | None:intergenic | 30.0% | |
| !!! | TGTTTTAGTGCTCTACAATT+TGG | + | chr6_1:5977590-5977609 | Msa0871120:CDS | 30.0% |
| !! | TTGATACTTCTAGGGTTTGA+TGG | + | chr6_1:5976143-5976162 | Msa0871120:intron | 35.0% |
| ! | AAACCCAACCTTTTTGCTTT+AGG | - | chr6_1:5976584-5976603 | None:intergenic | 35.0% |
| !!! | TTGCTGGGTTTTTTTTACTG+TGG | + | chr6_1:5976617-5976636 | Msa0871120:intron | 35.0% |
| ! | GGAGATTAACCTCTTTTCTA+TGG | + | chr6_1:5976638-5976657 | Msa0871120:intron | 35.0% |
| TATCAAGCACCATAGAAAAG+AGG | - | chr6_1:5976650-5976669 | None:intergenic | 35.0% | |
| GATACTTTGCAGAAGTTGAA+AGG | + | chr6_1:5976666-5976685 | Msa0871120:intron | 35.0% | |
| AGTTGAAAGGGAAGATGAAT+TGG | + | chr6_1:5976679-5976698 | Msa0871120:CDS | 35.0% | |
| ATGACCTTAGCATTTCTTGA+AGG | - | chr6_1:5976707-5976726 | None:intergenic | 35.0% | |
| !!! | TCTTGTTTTCAGTTCAGTTG+AGG | - | chr6_1:5976911-5976930 | None:intergenic | 35.0% |
| ACTGAACTGAAAACAAGACA+TGG | + | chr6_1:5976913-5976932 | Msa0871120:intron | 35.0% | |
| TGAAAACAAGACATGGTACT+TGG | + | chr6_1:5976920-5976939 | Msa0871120:intron | 35.0% | |
| AAGTATTACCGAGTCAACTT+TGG | + | chr6_1:5977215-5977234 | Msa0871120:CDS | 35.0% | |
| GAGTAATACCAAAGTTGACT+CGG | - | chr6_1:5977226-5977245 | None:intergenic | 35.0% | |
| ACTCTAATGAAAGGAATGTG+AGG | + | chr6_1:5977280-5977299 | Msa0871120:intron | 35.0% | |
| ACTTTGCTTGGTTCAATTCT+TGG | + | chr6_1:5977373-5977392 | Msa0871120:intron | 35.0% | |
| ! | TTCTATTGTTGTTGGCTAGT+TGG | + | chr6_1:5977434-5977453 | Msa0871120:intron | 35.0% |
| !!! | GCAGAGTTTTTTGAGCAATT+CGG | + | chr6_1:5977486-5977505 | Msa0871120:CDS | 35.0% |
| !!! | CAGAGTTTTTTGAGCAATTC+GGG | + | chr6_1:5977487-5977506 | Msa0871120:CDS | 35.0% |
| ! | GCTTCTTGTGTTATTATTGC+AGG | + | chr6_1:5977558-5977577 | Msa0871120:CDS | 35.0% |
| ! | TGTGTTATTATTGCAGGTGT+TGG | + | chr6_1:5977564-5977583 | Msa0871120:CDS | 35.0% |
| ! | GTGTTATTATTGCAGGTGTT+GGG | + | chr6_1:5977565-5977584 | Msa0871120:CDS | 35.0% |
| ! | TGTTATTATTGCAGGTGTTG+GGG | + | chr6_1:5977566-5977585 | Msa0871120:CDS | 35.0% |
| !!! | TCCCTGTTCTGGTTTTTATT+GGG | + | chr6_1:5977613-5977632 | Msa0871120:intron | 35.0% |
| !!! | ATCATTTGGTGCCATTTTGT+AGG | + | chr6_1:5977659-5977678 | Msa0871120:intron | 35.0% |
| !!! | GGTTTTTCTAGTTGTTGAGT+CGG | - | chr6_1:5977750-5977769 | None:intergenic | 35.0% |
| ACTCAACAACTAGAAAAACC+AGG | + | chr6_1:5977750-5977769 | Msa0871120:CDS | 35.0% | |
| CTCAACAACTAGAAAAACCA+GGG | + | chr6_1:5977751-5977770 | Msa0871120:CDS | 35.0% | |
| !! | TTGATACTTCTAGGGTTTGA+TGG | + | chr6_1:5976143-5976162 | Msa0871120:intron | 35.0% |
| ! | AAACCCAACCTTTTTGCTTT+AGG | - | chr6_1:5976584-5976603 | None:intergenic | 35.0% |
| !!! | TTGCTGGGTTTTTTTTACTG+TGG | + | chr6_1:5976617-5976636 | Msa0871120:intron | 35.0% |
| ! | GGAGATTAACCTCTTTTCTA+TGG | + | chr6_1:5976638-5976657 | Msa0871120:intron | 35.0% |
| TATCAAGCACCATAGAAAAG+AGG | - | chr6_1:5976650-5976669 | None:intergenic | 35.0% | |
| GATACTTTGCAGAAGTTGAA+AGG | + | chr6_1:5976666-5976685 | Msa0871120:intron | 35.0% | |
| AGTTGAAAGGGAAGATGAAT+TGG | + | chr6_1:5976679-5976698 | Msa0871120:CDS | 35.0% | |
| ATGACCTTAGCATTTCTTGA+AGG | - | chr6_1:5976707-5976726 | None:intergenic | 35.0% | |
| !!! | TCTTGTTTTCAGTTCAGTTG+AGG | - | chr6_1:5976911-5976930 | None:intergenic | 35.0% |
| ACTGAACTGAAAACAAGACA+TGG | + | chr6_1:5976913-5976932 | Msa0871120:intron | 35.0% | |
| TGAAAACAAGACATGGTACT+TGG | + | chr6_1:5976920-5976939 | Msa0871120:intron | 35.0% | |
| AAGTATTACCGAGTCAACTT+TGG | + | chr6_1:5977215-5977234 | Msa0871120:CDS | 35.0% | |
| GAGTAATACCAAAGTTGACT+CGG | - | chr6_1:5977226-5977245 | None:intergenic | 35.0% | |
| ACTCTAATGAAAGGAATGTG+AGG | + | chr6_1:5977280-5977299 | Msa0871120:intron | 35.0% | |
| ACTTTGCTTGGTTCAATTCT+TGG | + | chr6_1:5977373-5977392 | Msa0871120:intron | 35.0% | |
| ! | TTCTATTGTTGTTGGCTAGT+TGG | + | chr6_1:5977434-5977453 | Msa0871120:intron | 35.0% |
| !!! | GCAGAGTTTTTTGAGCAATT+CGG | + | chr6_1:5977486-5977505 | Msa0871120:CDS | 35.0% |
| !!! | CAGAGTTTTTTGAGCAATTC+GGG | + | chr6_1:5977487-5977506 | Msa0871120:CDS | 35.0% |
| ! | GCTTCTTGTGTTATTATTGC+AGG | + | chr6_1:5977558-5977577 | Msa0871120:CDS | 35.0% |
| ! | TGTGTTATTATTGCAGGTGT+TGG | + | chr6_1:5977564-5977583 | Msa0871120:CDS | 35.0% |
| ! | GTGTTATTATTGCAGGTGTT+GGG | + | chr6_1:5977565-5977584 | Msa0871120:CDS | 35.0% |
| ! | TGTTATTATTGCAGGTGTTG+GGG | + | chr6_1:5977566-5977585 | Msa0871120:CDS | 35.0% |
| !!! | TCCCTGTTCTGGTTTTTATT+GGG | + | chr6_1:5977613-5977632 | Msa0871120:intron | 35.0% |
| !!! | ATCATTTGGTGCCATTTTGT+AGG | + | chr6_1:5977659-5977678 | Msa0871120:intron | 35.0% |
| !!! | GGTTTTTCTAGTTGTTGAGT+CGG | - | chr6_1:5977750-5977769 | None:intergenic | 35.0% |
| ACTCAACAACTAGAAAAACC+AGG | + | chr6_1:5977750-5977769 | Msa0871120:CDS | 35.0% | |
| CTCAACAACTAGAAAAACCA+GGG | + | chr6_1:5977751-5977770 | Msa0871120:CDS | 35.0% | |
| CTACTGGGAACAAATCTAAC+AGG | - | chr6_1:5976250-5976269 | None:intergenic | 40.0% | |
| CTCTGTTCATGATAGCTACT+GGG | - | chr6_1:5976265-5976284 | None:intergenic | 40.0% | |
| ACTCTGTTCATGATAGCTAC+TGG | - | chr6_1:5976266-5976285 | None:intergenic | 40.0% | |
| TCACCAATAGCTATCACAAG+TGG | + | chr6_1:5976361-5976380 | Msa0871120:intron | 40.0% | |
| CACCAATAGCTATCACAAGT+GGG | + | chr6_1:5976362-5976381 | Msa0871120:intron | 40.0% | |
| TTCCCACTTGTGATAGCTAT+TGG | - | chr6_1:5976503-5976522 | None:intergenic | 40.0% | |
| TCAGTTCAGTTGAGGATTAG+TGG | - | chr6_1:5976903-5976922 | None:intergenic | 40.0% | |
| !! | ACTTCTGGAGCGATATATGT+CGG | - | chr6_1:5977199-5977218 | None:intergenic | 40.0% |
| !! | AGTTGACTCGGTAATACTTC+TGG | - | chr6_1:5977214-5977233 | None:intergenic | 40.0% |
| AAGCAAAGTTGCAGTCTAAG+AGG | - | chr6_1:5977362-5977381 | None:intergenic | 40.0% | |
| TCTTAGACTGCAACTTTGCT+TGG | + | chr6_1:5977361-5977380 | Msa0871120:intron | 40.0% | |
| !!! | TTTTTTGAGCAATTCGGGAC+TGG | + | chr6_1:5977492-5977511 | Msa0871120:CDS | 40.0% |
| ! | GACTGGTTCTTTGTGTATCA+GGG | + | chr6_1:5977509-5977528 | Msa0871120:CDS | 40.0% |
| CTTTGTGTATCAGGGAAGTA+AGG | + | chr6_1:5977517-5977536 | Msa0871120:CDS | 40.0% | |
| !!! | GTCCCTGTTCTGGTTTTTAT+TGG | + | chr6_1:5977612-5977631 | Msa0871120:intron | 40.0% |
| CCCCAATAAAAACCAGAACA+GGG | - | chr6_1:5977617-5977636 | None:intergenic | 40.0% | |
| !!! | CCCTGTTCTGGTTTTTATTG+GGG | + | chr6_1:5977614-5977633 | Msa0871120:intron | 40.0% |
| CTACTGGGAACAAATCTAAC+AGG | - | chr6_1:5976250-5976269 | None:intergenic | 40.0% | |
| CTCTGTTCATGATAGCTACT+GGG | - | chr6_1:5976265-5976284 | None:intergenic | 40.0% | |
| ACTCTGTTCATGATAGCTAC+TGG | - | chr6_1:5976266-5976285 | None:intergenic | 40.0% | |
| TCACCAATAGCTATCACAAG+TGG | + | chr6_1:5976361-5976380 | Msa0871120:intron | 40.0% | |
| CACCAATAGCTATCACAAGT+GGG | + | chr6_1:5976362-5976381 | Msa0871120:intron | 40.0% | |
| TTCCCACTTGTGATAGCTAT+TGG | - | chr6_1:5976503-5976522 | None:intergenic | 40.0% | |
| TCAGTTCAGTTGAGGATTAG+TGG | - | chr6_1:5976903-5976922 | None:intergenic | 40.0% | |
| !! | ACTTCTGGAGCGATATATGT+CGG | - | chr6_1:5977199-5977218 | None:intergenic | 40.0% |
| !! | AGTTGACTCGGTAATACTTC+TGG | - | chr6_1:5977214-5977233 | None:intergenic | 40.0% |
| AAGCAAAGTTGCAGTCTAAG+AGG | - | chr6_1:5977362-5977381 | None:intergenic | 40.0% | |
| TCTTAGACTGCAACTTTGCT+TGG | + | chr6_1:5977361-5977380 | Msa0871120:intron | 40.0% | |
| !!! | TTTTTTGAGCAATTCGGGAC+TGG | + | chr6_1:5977492-5977511 | Msa0871120:CDS | 40.0% |
| ! | GACTGGTTCTTTGTGTATCA+GGG | + | chr6_1:5977509-5977528 | Msa0871120:CDS | 40.0% |
| CTTTGTGTATCAGGGAAGTA+AGG | + | chr6_1:5977517-5977536 | Msa0871120:CDS | 40.0% | |
| !!! | GTCCCTGTTCTGGTTTTTAT+TGG | + | chr6_1:5977612-5977631 | Msa0871120:intron | 40.0% |
| CCCCAATAAAAACCAGAACA+GGG | - | chr6_1:5977617-5977636 | None:intergenic | 40.0% | |
| !!! | CCCTGTTCTGGTTTTTATTG+GGG | + | chr6_1:5977614-5977633 | Msa0871120:intron | 40.0% |
| ACTCTCTCCATCCATCACAA+AGG | + | chr6_1:5976027-5976046 | Msa0871120:CDS | 45.0% | |
| GGCTCCTTCAAGAAATGCTA+AGG | + | chr6_1:5976700-5976719 | Msa0871120:CDS | 45.0% | |
| ! | TTCAGTTGAGGATTAGTGGC+TGG | - | chr6_1:5976899-5976918 | None:intergenic | 45.0% |
| TTCACAACCGAAGTCAACTG+TGG | + | chr6_1:5977161-5977180 | Msa0871120:CDS | 45.0% | |
| ! | CCGAATACCACAGTTGACTT+CGG | - | chr6_1:5977171-5977190 | None:intergenic | 45.0% |
| CCGAAGTCAACTGTGGTATT+CGG | + | chr6_1:5977168-5977187 | Msa0871120:CDS | 45.0% | |
| CGAAGTCAACTGTGGTATTC+GGG | + | chr6_1:5977169-5977188 | Msa0871120:CDS | 45.0% | |
| !! | GGACTGGTTCTTTGTGTATC+AGG | + | chr6_1:5977508-5977527 | Msa0871120:CDS | 45.0% |
| AAGGATGTGTTGTCGTCACA+TGG | + | chr6_1:5977536-5977555 | Msa0871120:CDS | 45.0% | |
| CTACAATTTGGTCCCTGTTC+TGG | + | chr6_1:5977602-5977621 | Msa0871120:CDS | 45.0% | |
| GCCCCAATAAAAACCAGAAC+AGG | - | chr6_1:5977618-5977637 | None:intergenic | 45.0% | |
| CTAGAAAAACCAGGGAACAG+AGG | + | chr6_1:5977759-5977778 | Msa0871120:CDS | 45.0% | |
| AATCTAACTCCTCTGTTCCC+TGG | - | chr6_1:5977771-5977790 | None:intergenic | 45.0% | |
| ACTCTCTCCATCCATCACAA+AGG | + | chr6_1:5976027-5976046 | Msa0871120:CDS | 45.0% | |
| GGCTCCTTCAAGAAATGCTA+AGG | + | chr6_1:5976700-5976719 | Msa0871120:CDS | 45.0% | |
| ! | TTCAGTTGAGGATTAGTGGC+TGG | - | chr6_1:5976899-5976918 | None:intergenic | 45.0% |
| TTCACAACCGAAGTCAACTG+TGG | + | chr6_1:5977161-5977180 | Msa0871120:CDS | 45.0% | |
| ! | CCGAATACCACAGTTGACTT+CGG | - | chr6_1:5977171-5977190 | None:intergenic | 45.0% |
| CCGAAGTCAACTGTGGTATT+CGG | + | chr6_1:5977168-5977187 | Msa0871120:CDS | 45.0% | |
| CGAAGTCAACTGTGGTATTC+GGG | + | chr6_1:5977169-5977188 | Msa0871120:CDS | 45.0% | |
| !! | GGACTGGTTCTTTGTGTATC+AGG | + | chr6_1:5977508-5977527 | Msa0871120:CDS | 45.0% |
| AAGGATGTGTTGTCGTCACA+TGG | + | chr6_1:5977536-5977555 | Msa0871120:CDS | 45.0% | |
| CTACAATTTGGTCCCTGTTC+TGG | + | chr6_1:5977602-5977621 | Msa0871120:CDS | 45.0% | |
| GCCCCAATAAAAACCAGAAC+AGG | - | chr6_1:5977618-5977637 | None:intergenic | 45.0% | |
| CTAGAAAAACCAGGGAACAG+AGG | + | chr6_1:5977759-5977778 | Msa0871120:CDS | 45.0% | |
| AATCTAACTCCTCTGTTCCC+TGG | - | chr6_1:5977771-5977790 | None:intergenic | 45.0% | |
| GAGAGTGAGCTATGCGTTTC+TGG | - | chr6_1:5975970-5975989 | None:intergenic | 50.0% | |
| !! | GTGATGGATGGAGAGAGTGA+CGG | - | chr6_1:5976025-5976044 | None:intergenic | 50.0% |
| GAGAGTGAGCTATGCGTTTC+TGG | - | chr6_1:5975970-5975989 | None:intergenic | 50.0% | |
| !! | GTGATGGATGGAGAGAGTGA+CGG | - | chr6_1:5976025-5976044 | None:intergenic | 50.0% |
| ATGGATGGAGAGAGTGACGG+CGG | - | chr6_1:5976022-5976041 | None:intergenic | 55.0% | |
| GCTAGTTGGTTGTGTGCCTC+TGG | + | chr6_1:5977448-5977467 | Msa0871120:intron | 55.0% | |
| CGTACAAGACAGCTGTCCAG+AGG | - | chr6_1:5977467-5977486 | None:intergenic | 55.0% | |
| CGAGTGCAGACTGCGTTGTT+TGG | + | chr6_1:5977704-5977723 | Msa0871120:CDS | 55.0% | |
| ATGGATGGAGAGAGTGACGG+CGG | - | chr6_1:5976022-5976041 | None:intergenic | 55.0% | |
| GCTAGTTGGTTGTGTGCCTC+TGG | + | chr6_1:5977448-5977467 | Msa0871120:intron | 55.0% | |
| CGTACAAGACAGCTGTCCAG+AGG | - | chr6_1:5977467-5977486 | None:intergenic | 55.0% | |
| CGAGTGCAGACTGCGTTGTT+TGG | + | chr6_1:5977704-5977723 | Msa0871120:CDS | 55.0% | |
| GACGGCGGCGAGGGTGAGAT+CGG | - | chr6_1:5976007-5976026 | None:intergenic | 70.0% | |
| GGAGAGAGTGACGGCGGCGA+GGG | - | chr6_1:5976016-5976035 | None:intergenic | 70.0% | |
| TGGAGAGAGTGACGGCGGCG+AGG | - | chr6_1:5976017-5976036 | None:intergenic | 70.0% | |
| GACGGCGGCGAGGGTGAGAT+CGG | - | chr6_1:5976007-5976026 | None:intergenic | 70.0% | |
| GGAGAGAGTGACGGCGGCGA+GGG | - | chr6_1:5976016-5976035 | None:intergenic | 70.0% | |
| TGGAGAGAGTGACGGCGGCG+AGG | - | chr6_1:5976017-5976036 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_1 | gene | 5975967 | 5977827 | 5975967 | ID=Msa0871120;Name=Msa0871120 |
| chr6_1 | mRNA | 5975967 | 5977827 | 5975967 | ID=Msa0871120-mRNA-1;Parent=Msa0871120;Name=Msa0871120-mRNA-1;_AED=0.30;_eAED=0.30;_QI=0|0.5|0.2|1|0.75|0.6|5|0|178 |
| chr6_1 | exon | 5975967 | 5976048 | 5975967 | ID=Msa0871120-mRNA-1:exon:1794;Parent=Msa0871120-mRNA-1 |
| chr6_1 | exon | 5976678 | 5976721 | 5976678 | ID=Msa0871120-mRNA-1:exon:1795;Parent=Msa0871120-mRNA-1 |
| chr6_1 | exon | 5977147 | 5977236 | 5977147 | ID=Msa0871120-mRNA-1:exon:1796;Parent=Msa0871120-mRNA-1 |
| chr6_1 | exon | 5977453 | 5977623 | 5977453 | ID=Msa0871120-mRNA-1:exon:1797;Parent=Msa0871120-mRNA-1 |
| chr6_1 | exon | 5977681 | 5977827 | 5977681 | ID=Msa0871120-mRNA-1:exon:1798;Parent=Msa0871120-mRNA-1 |
| chr6_1 | CDS | 5975967 | 5976048 | 5975967 | ID=Msa0871120-mRNA-1:cds;Parent=Msa0871120-mRNA-1 |
| chr6_1 | CDS | 5976678 | 5976721 | 5976678 | ID=Msa0871120-mRNA-1:cds;Parent=Msa0871120-mRNA-1 |
| chr6_1 | CDS | 5977147 | 5977236 | 5977147 | ID=Msa0871120-mRNA-1:cds;Parent=Msa0871120-mRNA-1 |
| chr6_1 | CDS | 5977453 | 5977623 | 5977453 | ID=Msa0871120-mRNA-1:cds;Parent=Msa0871120-mRNA-1 |
| chr6_1 | CDS | 5977681 | 5977827 | 5977681 | ID=Msa0871120-mRNA-1:cds;Parent=Msa0871120-mRNA-1 |
| Gene Sequence |
| Protein sequence |
