Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1296220 | sp|Q9FJ06|TBL4_ARATH | 43.655 | 197 | 78 | 5 | 48 | 242 | 210 | 375 | 5.62e-43 | 154 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1296220 | G7JMR6 | 69.744 | 195 | 28 | 3 | 50 | 243 | 226 | 390 | 7.16e-83 | 264 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0009420 | Msa1296220 | 0.807881 | 4.070634e-50 | -8.615850e-47 |
| Msa0213360 | Msa1296220 | 0.807950 | 3.933933e-50 | -8.615850e-47 |
| Msa0988010 | Msa1296220 | 0.852329 | 4.959562e-61 | -8.615850e-47 |
| Msa0871120 | Msa1296220 | 0.804193 | 2.429327e-49 | -8.615850e-47 |
| Msa0893710 | Msa1296220 | 0.957055 | 6.812277e-115 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1296220 | MtrunA17_Chr4g0068111 | 69.744 | 195 | 28 | 3 | 50 | 243 | 226 | 390 | 1.38e-86 | 264 |
| Msa1296220 | MtrunA17_Chr7g0258851 | 39.572 | 187 | 82 | 2 | 56 | 242 | 366 | 521 | 3.15e-41 | 148 |
| Msa1296220 | MtrunA17_Chr1g0175671 | 38.942 | 208 | 94 | 5 | 35 | 242 | 269 | 443 | 7.26e-41 | 146 |
| Msa1296220 | MtrunA17_Chr8g0368461 | 41.711 | 187 | 77 | 4 | 56 | 242 | 308 | 462 | 1.47e-39 | 143 |
| Msa1296220 | MtrunA17_Chr1g0213281 | 37.209 | 215 | 101 | 6 | 29 | 242 | 268 | 449 | 1.66e-39 | 143 |
| Msa1296220 | MtrunA17_Chr5g0413271 | 40.957 | 188 | 79 | 4 | 55 | 242 | 255 | 410 | 1.43e-37 | 137 |
| Msa1296220 | MtrunA17_Chr4g0071391 | 35.829 | 187 | 89 | 4 | 56 | 242 | 227 | 382 | 1.14e-31 | 120 |
| Msa1296220 | MtrunA17_Chr1g0150371 | 96.296 | 54 | 2 | 0 | 3 | 56 | 61 | 114 | 1.13e-30 | 111 |
| Msa1296220 | MtrunA17_Chr7g0269991 | 34.409 | 186 | 89 | 4 | 57 | 242 | 256 | 408 | 3.28e-26 | 105 |
| Msa1296220 | MtrunA17_Chr3g0105301 | 27.128 | 188 | 105 | 4 | 57 | 242 | 155 | 312 | 5.43e-17 | 79.3 |
| Msa1296220 | MtrunA17_Chr2g0287901 | 32.258 | 124 | 81 | 2 | 40 | 162 | 200 | 321 | 1.96e-16 | 77.8 |
| Msa1296220 | MtrunA17_Chr7g0259711 | 28.415 | 183 | 98 | 5 | 40 | 221 | 194 | 344 | 8.11e-16 | 76.3 |
| Msa1296220 | MtrunA17_Chr3g0126021 | 27.673 | 159 | 103 | 1 | 4 | 162 | 211 | 357 | 6.94e-15 | 73.6 |
| Msa1296220 | MtrunA17_Chr5g0430371 | 31.776 | 107 | 67 | 1 | 57 | 163 | 170 | 270 | 7.47e-15 | 73.2 |
| Msa1296220 | MtrunA17_Chr8g0384151 | 26.984 | 189 | 115 | 4 | 4 | 186 | 168 | 339 | 1.26e-14 | 72.8 |
| Msa1296220 | MtrunA17_Chr4g0045951 | 25.000 | 236 | 125 | 7 | 20 | 242 | 110 | 306 | 1.35e-14 | 72.4 |
| Msa1296220 | MtrunA17_Chr4g0045941 | 26.667 | 195 | 99 | 7 | 52 | 242 | 140 | 294 | 4.22e-13 | 67.8 |
| Msa1296220 | MtrunA17_Chr2g0283581 | 25.532 | 188 | 102 | 7 | 56 | 242 | 152 | 302 | 9.05e-13 | 67.0 |
| Msa1296220 | MtrunA17_Chr2g0314791 | 36.697 | 109 | 57 | 3 | 57 | 162 | 148 | 247 | 2.89e-12 | 65.5 |
| Msa1296220 | MtrunA17_Chr1g0171171 | 27.358 | 106 | 72 | 1 | 57 | 162 | 164 | 264 | 4.83e-12 | 64.7 |
| Msa1296220 | MtrunA17_Chr1g0210771 | 29.245 | 106 | 70 | 1 | 57 | 162 | 170 | 270 | 8.42e-12 | 64.3 |
| Msa1296220 | MtrunA17_Chr2g0314801 | 27.389 | 157 | 85 | 4 | 86 | 242 | 169 | 296 | 7.78e-11 | 61.2 |
| Msa1296220 | MtrunA17_Chr5g0413851 | 36.957 | 92 | 51 | 3 | 77 | 162 | 160 | 250 | 9.63e-11 | 60.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1296220 | AT5G49340.1 | 43.655 | 197 | 78 | 5 | 48 | 242 | 210 | 375 | 5.71e-44 | 154 |
| Msa1296220 | AT3G12060.1 | 39.572 | 187 | 82 | 3 | 56 | 242 | 314 | 469 | 1.05e-40 | 147 |
| Msa1296220 | AT5G06700.1 | 37.968 | 187 | 85 | 2 | 56 | 242 | 373 | 528 | 1.99e-39 | 144 |
| Msa1296220 | AT1G60790.1 | 42.781 | 187 | 76 | 4 | 56 | 242 | 310 | 465 | 3.05e-39 | 142 |
| Msa1296220 | AT5G20590.1 | 34.759 | 187 | 91 | 3 | 56 | 242 | 260 | 415 | 2.44e-32 | 123 |
| Msa1296220 | AT3G62390.1 | 32.796 | 186 | 92 | 5 | 57 | 242 | 257 | 409 | 1.39e-27 | 110 |
| Msa1296220 | AT5G20590.2 | 41.905 | 105 | 60 | 1 | 56 | 160 | 260 | 363 | 3.66e-25 | 102 |
| Msa1296220 | AT3G62390.2 | 40.566 | 106 | 61 | 1 | 57 | 162 | 257 | 360 | 3.35e-24 | 100 |
| Msa1296220 | AT5G19160.2 | 34.783 | 138 | 84 | 3 | 26 | 162 | 191 | 323 | 1.74e-21 | 92.0 |
| Msa1296220 | AT5G19160.1 | 34.783 | 138 | 84 | 3 | 26 | 162 | 191 | 323 | 2.92e-21 | 92.4 |
| Msa1296220 | AT5G58600.2 | 33.846 | 130 | 71 | 3 | 34 | 162 | 163 | 278 | 1.19e-19 | 85.9 |
| Msa1296220 | AT5G58600.1 | 30.102 | 196 | 95 | 7 | 34 | 227 | 163 | 318 | 3.53e-19 | 85.9 |
| Msa1296220 | AT3G06080.1 | 32.609 | 138 | 87 | 3 | 26 | 162 | 195 | 327 | 1.86e-18 | 83.6 |
| Msa1296220 | AT3G06080.2 | 32.609 | 138 | 87 | 3 | 26 | 162 | 195 | 327 | 2.10e-18 | 84.0 |
| Msa1296220 | AT3G11570.1 | 25.275 | 182 | 106 | 3 | 61 | 242 | 205 | 356 | 1.61e-15 | 75.5 |
| Msa1296220 | AT1G48880.1 | 30.822 | 146 | 88 | 2 | 17 | 162 | 207 | 339 | 1.23e-14 | 73.2 |
| Msa1296220 | AT5G06230.1 | 25.926 | 189 | 109 | 4 | 40 | 228 | 171 | 328 | 4.89e-13 | 68.2 |
| Msa1296220 | AT5G06230.2 | 25.926 | 189 | 109 | 4 | 40 | 228 | 130 | 287 | 4.95e-13 | 68.2 |
| Msa1296220 | AT1G78710.1 | 25.523 | 239 | 121 | 8 | 20 | 242 | 102 | 299 | 1.01e-12 | 67.4 |
| Msa1296220 | AT1G29050.1 | 21.693 | 189 | 109 | 4 | 56 | 242 | 172 | 323 | 1.54e-12 | 66.6 |
| Msa1296220 | AT5G06230.3 | 27.419 | 124 | 89 | 1 | 40 | 163 | 171 | 293 | 2.08e-12 | 65.9 |
| Msa1296220 | AT2G24970.1 | 55.556 | 54 | 24 | 0 | 3 | 56 | 62 | 115 | 8.51e-12 | 62.0 |
| Msa1296220 | AT2G30010.1 | 24.242 | 198 | 121 | 6 | 48 | 242 | 160 | 331 | 1.55e-11 | 63.9 |
| Msa1296220 | AT2G30010.2 | 24.242 | 198 | 121 | 6 | 48 | 242 | 203 | 374 | 1.58e-11 | 63.9 |
| Msa1296220 | AT3G54260.1 | 26.415 | 106 | 73 | 2 | 57 | 162 | 162 | 262 | 8.60e-11 | 61.6 |
Find 59 sgRNAs with CRISPR-Local
Find 152 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGTGATGTTAATTAGGATTA+TGG | 0.236100 | 8_3:-55240989 | Msa1296220:intron |
| TTCCATTCTTGTACAAGAAA+TGG | 0.283805 | 8_3:+55240941 | None:intergenic |
| AGCTTGAAGCTTTGCGTTGC+TGG | 0.291568 | 8_3:+55242846 | None:intergenic |
| TAGTTAAGTAATTGATTCTA+TGG | 0.304401 | 8_3:-55240472 | Msa1296220:intron |
| GTGCAGGATTTGATTGATAA+AGG | 0.344148 | 8_3:-55241803 | Msa1296220:intron |
| CACTGCCCCTTCAGATTCAT+AGG | 0.352061 | 8_3:+55242064 | None:intergenic |
| TCCATTCTTGTACAAGAAAT+GGG | 0.352802 | 8_3:+55240942 | None:intergenic |
| TGGGGATTTCACAATGTCTA+TGG | 0.361987 | 8_3:+55240961 | None:intergenic |
| CCCCATTTCTTGTACAAGAA+TGG | 0.370184 | 8_3:-55240943 | Msa1296220:CDS |
| AAGATAGCTTTCATTTGTAA+TGG | 0.380265 | 8_3:+55240389 | None:intergenic |
| TTCCTCAAAGAGAAACTCTT+AGG | 0.383679 | 8_3:-55240898 | Msa1296220:CDS |
| GTGGTCTCTTACTCTCTGAT+TGG | 0.386694 | 8_3:-55242731 | Msa1296220:intron |
| AGCCTAAGAGTTTCTCTTTG+AGG | 0.395436 | 8_3:+55240896 | None:intergenic |
| AGATAGCTTTCATTTGTAAT+GGG | 0.396515 | 8_3:+55240390 | None:intergenic |
| GAACGGCGGTGGAGCGGTGG+TGG | 0.405371 | 8_3:+55242900 | None:intergenic |
| TCATCATCTTCACTAGTAAA+GGG | 0.406935 | 8_3:+55241719 | None:intergenic |
| CGCATTCACTAACTTCAAAC+AGG | 0.413377 | 8_3:-55241696 | Msa1296220:intron |
| TCGACAATTCCCGTTGTCAA+TGG | 0.434215 | 8_3:+55240357 | None:intergenic |
| GTCATCATCTTCACTAGTAA+AGG | 0.461764 | 8_3:+55241718 | None:intergenic |
| GAAGCTTTGCGTTGCTGGAA+GGG | 0.484454 | 8_3:+55242851 | None:intergenic |
| TGAGCTTCTTGCTGCTAAGC+AGG | 0.485620 | 8_3:-55242038 | Msa1296220:intron |
| GAACGCTGGTGGAACGGCGG+TGG | 0.496006 | 8_3:+55242889 | None:intergenic |
| TGAAGCTTTGCGTTGCTGGA+AGG | 0.503173 | 8_3:+55242850 | None:intergenic |
| GTGGAACGGCGGTGGAGCGG+TGG | 0.506198 | 8_3:+55242897 | None:intergenic |
| GCAGCATATCCATTGACAAC+GGG | 0.506258 | 8_3:-55240366 | Msa1296220:CDS |
| TAGAAATTTAGTGCAGCGTA+TGG | 0.518555 | 8_3:-55241759 | Msa1296220:CDS |
| AACTCTGGAGGTAAATGTGA+TGG | 0.519732 | 8_3:-55240423 | Msa1296220:CDS |
| GGCAAACCCTATGAATCTGA+AGG | 0.520434 | 8_3:-55242071 | Msa1296220:exon |
| TGATAGCAAGCACACGTACA+AGG | 0.520979 | 8_3:-55240586 | Msa1296220:CDS |
| CATTTAAGACATGGGCTAAG+TGG | 0.521768 | 8_3:-55240623 | Msa1296220:CDS |
| CTGGTGGAACGGCGGTGGAG+CGG | 0.529400 | 8_3:+55242894 | None:intergenic |
| GCGGTGGAGCGGTGGTGGAA+CGG | 0.549350 | 8_3:+55242905 | None:intergenic |
| GTAGAATTTGTTCAAACTCG+TGG | 0.551748 | 8_3:-55242772 | Msa1296220:five_prime_UTR |
| GTTGTCGAACGCTGGTGGAA+CGG | 0.553100 | 8_3:+55242883 | None:intergenic |
| ACTGCCCCTTCAGATTCATA+GGG | 0.561633 | 8_3:+55242065 | None:intergenic |
| ACTCTGGAGGTAAATGTGAT+GGG | 0.561757 | 8_3:-55240422 | Msa1296220:CDS |
| ATTTAAGACATGGGCTAAGT+GGG | 0.563096 | 8_3:-55240622 | Msa1296220:CDS |
| ATGGCTGAAATTTGCAGAGG+GGG | 0.575397 | 8_3:-55240453 | Msa1296220:CDS |
| GAGCAGTTGTCGAACGCTGG+TGG | 0.580733 | 8_3:+55242878 | None:intergenic |
| CCATTCTTGTACAAGAAATG+GGG | 0.584992 | 8_3:+55240943 | None:intergenic |
| GATGAGCAGTTGTCGAACGC+TGG | 0.596219 | 8_3:+55242875 | None:intergenic |
| TACAACAAGCATTTAAGACA+TGG | 0.597685 | 8_3:-55240632 | Msa1296220:CDS |
| AGCATCATAATATTGAGACT+TGG | 0.603108 | 8_3:+55240856 | None:intergenic |
| CTATGGCTGAAATTTGCAGA+GGG | 0.612818 | 8_3:-55240455 | Msa1296220:CDS |
| CAGCGTATGGAATCATCTGT+GGG | 0.612923 | 8_3:-55241746 | Msa1296220:CDS |
| GCAAACCCTATGAATCTGAA+GGG | 0.614234 | 8_3:-55242070 | Msa1296220:exon |
| ACAACAAGCATTTAAGACAT+GGG | 0.616597 | 8_3:-55240631 | Msa1296220:CDS |
| GATAGCAAGCACACGTACAA+GGG | 0.617444 | 8_3:-55240585 | Msa1296220:CDS |
| GCAGCGTATGGAATCATCTG+TGG | 0.620380 | 8_3:-55241747 | Msa1296220:CDS |
| CATCATCTTCACTAGTAAAG+GGG | 0.629037 | 8_3:+55241720 | None:intergenic |
| TGGCTGAAATTTGCAGAGGG+GGG | 0.633931 | 8_3:-55240452 | Msa1296220:CDS |
| CTCTGGAGGTAAATGTGATG+GGG | 0.640338 | 8_3:-55240421 | Msa1296220:CDS |
| AGTAGAAACTACTTTCAGCA+AGG | 0.643265 | 8_3:-55240693 | Msa1296220:CDS |
| GTCGAACGCTGGTGGAACGG+CGG | 0.651355 | 8_3:+55242886 | None:intergenic |
| TCTATGGCTGAAATTTGCAG+AGG | 0.653226 | 8_3:-55240456 | Msa1296220:CDS |
| CGTGTGCTTGCTATCAACTG+TGG | 0.660073 | 8_3:+55240593 | None:intergenic |
| TGCAGCATATCCATTGACAA+CGG | 0.664780 | 8_3:-55240367 | Msa1296220:CDS |
| CAAACCCTATGAATCTGAAG+GGG | 0.696980 | 8_3:-55242069 | Msa1296220:exon |
| TATGGCTGAAATTTGCAGAG+GGG | 0.717068 | 8_3:-55240454 | Msa1296220:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTAATCTAATTTGAATTTT+AGG | - | chr8_3:55240687-55240706 | Msa1296220:CDS | 10.0% |
| !!! | ACTTAGTAAAAATTGAATTT+TGG | - | chr8_3:55240774-55240793 | Msa1296220:intron | 15.0% |
| !! | GTTAACAAACAAAATTAAAT+AGG | + | chr8_3:55240984-55241003 | None:intergenic | 15.0% |
| !! | AATTAAAAAGAGTGAAAAAA+GGG | + | chr8_3:55241171-55241190 | None:intergenic | 15.0% |
| !! | ATTATTAATAAGTAGTTCAA+AGG | - | chr8_3:55242565-55242584 | Msa1296220:intron | 15.0% |
| !! | ATTAGATTAAACTCACAATT+AGG | + | chr8_3:55240678-55240697 | None:intergenic | 20.0% |
| !!! | TTTTAGGTTTTAGATTCTTA+CGG | - | chr8_3:55240703-55240722 | Msa1296220:intron | 20.0% |
| !!! | TAAAAATTGAATTTTGGAGA+AGG | - | chr8_3:55240780-55240799 | Msa1296220:intron | 20.0% |
| !! | TTGAAATAAATCAAGTAACA+AGG | + | chr8_3:55240936-55240955 | None:intergenic | 20.0% |
| !! | ATTCACGAATATTATAACAA+AGG | + | chr8_3:55241006-55241025 | None:intergenic | 20.0% |
| !! | ATTAAAAAGAGTGAAAAAAG+GGG | + | chr8_3:55241170-55241189 | None:intergenic | 20.0% |
| !! | GAATTAAAAAGAGTGAAAAA+AGG | + | chr8_3:55241172-55241191 | None:intergenic | 20.0% |
| !! | ATGTGCTTTATATTGAAATT+GGG | - | chr8_3:55241206-55241225 | Msa1296220:intron | 20.0% |
| !! | TATACATATGTTAGTTGAAT+TGG | - | chr8_3:55241440-55241459 | Msa1296220:intron | 20.0% |
| !! | ATACATATGTTAGTTGAATT+GGG | - | chr8_3:55241441-55241460 | Msa1296220:intron | 20.0% |
| !!! | ATTCTAGAAATGATATACAA+GGG | + | chr8_3:55242134-55242153 | None:intergenic | 20.0% |
| !!! | AATTCTAGAAATGATATACA+AGG | + | chr8_3:55242135-55242154 | None:intergenic | 20.0% |
| !! | AATCATGAAAAGACAAAAAA+TGG | - | chr8_3:55242508-55242527 | Msa1296220:intron | 20.0% |
| !! | ATCATGAAAAGACAAAAAAT+GGG | - | chr8_3:55242509-55242528 | Msa1296220:intron | 20.0% |
| !!! | TAGTTAAGTAATTGATTCTA+TGG | - | chr8_3:55242836-55242855 | Msa1296220:five_prime_UTR | 20.0% |
| ! | TGATCTAATCTATGAGTATT+AGG | - | chr8_3:55240628-55240647 | Msa1296220:CDS | 25.0% |
| !!! | CTTTTTCTGTTGTTTGAATT+AGG | - | chr8_3:55241074-55241093 | Msa1296220:intron | 25.0% |
| ! | TTAAAAAGAGTGAAAAAAGG+GGG | + | chr8_3:55241169-55241188 | None:intergenic | 25.0% |
| ! | TTCAATATAAAGCACATCAA+AGG | + | chr8_3:55241203-55241222 | None:intergenic | 25.0% |
| ! | GATGTGCTTTATATTGAAAT+TGG | - | chr8_3:55241205-55241224 | Msa1296220:intron | 25.0% |
| !! | TGTTATACTTCAATGCATTT+TGG | - | chr8_3:55241307-55241326 | Msa1296220:intron | 25.0% |
| ! | TATGTAGAATTGGATTTGAA+TGG | - | chr8_3:55241339-55241358 | Msa1296220:intron | 25.0% |
| ! | TAATATAACAGTGACAATGT+CGG | - | chr8_3:55241363-55241382 | Msa1296220:intron | 25.0% |
| ! | AAGAACACACATTCAAATAT+AGG | + | chr8_3:55241690-55241709 | None:intergenic | 25.0% |
| !!! | TCTTTGATTTTCCTTTTTTG+TGG | - | chr8_3:55241706-55241725 | Msa1296220:CDS | 25.0% |
| !!! | CTTTGATTTTCCTTTTTTGT+GGG | - | chr8_3:55241707-55241726 | Msa1296220:CDS | 25.0% |
| ! | TTACATGAACAAAATCAAAG+AGG | + | chr8_3:55241791-55241810 | None:intergenic | 25.0% |
| ! | TTGTCAAATAGCAGTTATAT+CGG | - | chr8_3:55241918-55241937 | Msa1296220:intron | 25.0% |
| !!! | TGCTAGTAGATTTTAACAAA+CGG | - | chr8_3:55241994-55242013 | Msa1296220:intron | 25.0% |
| ! | TACACTACTAGATTAAAGTT+AGG | - | chr8_3:55242050-55242069 | Msa1296220:CDS | 25.0% |
| ! | AAACTACTATACTAACTTAC+AGG | + | chr8_3:55242180-55242199 | None:intergenic | 25.0% |
| ! | ATAGTAGTTTGACTGTAATT+TGG | - | chr8_3:55242190-55242209 | Msa1296220:intron | 25.0% |
| ! | TGTGATGTTAATTAGGATTA+TGG | - | chr8_3:55242319-55242338 | Msa1296220:intron | 25.0% |
| !! | GATATAATCATTTTCAACAC+AGG | - | chr8_3:55242475-55242494 | Msa1296220:intron | 25.0% |
| ! | AGATAGCTTTCATTTGTAAT+GGG | + | chr8_3:55242921-55242940 | None:intergenic | 25.0% |
| ! | AAGATAGCTTTCATTTGTAA+TGG | + | chr8_3:55242922-55242941 | None:intergenic | 25.0% |
| ! | AGCTTTTCATTCGAAGAAAT+AGG | - | chr8_3:55240738-55240757 | Msa1296220:intron | 30.0% |
| AGCAAATTGAACCTAAGATT+TGG | + | chr8_3:55240884-55240903 | None:intergenic | 30.0% | |
| ! | TATACTTCAATGCATTTTGG+TGG | - | chr8_3:55241310-55241329 | Msa1296220:intron | 30.0% |
| !! | ATACTTCAATGCATTTTGGT+GGG | - | chr8_3:55241311-55241330 | Msa1296220:intron | 30.0% |
| AATATAACAGTGACAATGTC+GGG | - | chr8_3:55241364-55241383 | Msa1296220:intron | 30.0% | |
| TTGAATTGGGAATAAGATCT+AGG | - | chr8_3:55241454-55241473 | Msa1296220:intron | 30.0% | |
| TCATCATCTTCACTAGTAAA+GGG | + | chr8_3:55241592-55241611 | None:intergenic | 30.0% | |
| AGATGCATTAGTTAGTCATA+AGG | - | chr8_3:55241826-55241845 | Msa1296220:intron | 30.0% | |
| GAAATGATATACAAGGGAAA+AGG | + | chr8_3:55242128-55242147 | None:intergenic | 30.0% | |
| TAGTTTGACTGTAATTTGGT+GGG | - | chr8_3:55242194-55242213 | Msa1296220:intron | 30.0% | |
| ! | TTTTGCTTGCATAAGGTTTA+AGG | - | chr8_3:55242272-55242291 | Msa1296220:intron | 30.0% |
| GATGTGTTGTGATGTTAATT+AGG | - | chr8_3:55242312-55242331 | Msa1296220:intron | 30.0% | |
| TCCATTCTTGTACAAGAAAT+GGG | + | chr8_3:55242369-55242388 | None:intergenic | 30.0% | |
| TTCCATTCTTGTACAAGAAA+TGG | + | chr8_3:55242370-55242389 | None:intergenic | 30.0% | |
| AGCATCATAATATTGAGACT+TGG | + | chr8_3:55242455-55242474 | None:intergenic | 30.0% | |
| ! | TACAACAAGCATTTAAGACA+TGG | - | chr8_3:55242676-55242695 | Msa1296220:intron | 30.0% |
| ! | ACAACAAGCATTTAAGACAT+GGG | - | chr8_3:55242677-55242696 | Msa1296220:intron | 30.0% |
| ! | GTAGAATTTGTTCAAACTCG+TGG | - | chr8_3:55240536-55240555 | Msa1296220:CDS | 35.0% |
| CTACTGTTATGCCAAATCTT+AGG | - | chr8_3:55240870-55240889 | Msa1296220:CDS | 35.0% | |
| ! | TTTCTCTTTTCTCTTTCTCC+TGG | - | chr8_3:55241030-55241049 | Msa1296220:intron | 35.0% |
| TATTGAAATTGGGTTTCTGC+AGG | - | chr8_3:55241216-55241235 | Msa1296220:intron | 35.0% | |
| GTGGGTTCTTTATGTAGAAT+TGG | - | chr8_3:55241329-55241348 | Msa1296220:intron | 35.0% | |
| ATATAACAGTGACAATGTCG+GGG | - | chr8_3:55241365-55241384 | Msa1296220:intron | 35.0% | |
| GTGCAGGATTTGATTGATAA+AGG | - | chr8_3:55241505-55241524 | Msa1296220:intron | 35.0% | |
| TAGAAATTTAGTGCAGCGTA+TGG | - | chr8_3:55241549-55241568 | Msa1296220:intron | 35.0% | |
| CATCATCTTCACTAGTAAAG+GGG | + | chr8_3:55241591-55241610 | None:intergenic | 35.0% | |
| GTCATCATCTTCACTAGTAA+AGG | + | chr8_3:55241593-55241612 | None:intergenic | 35.0% | |
| !! | TGATTTTCCTTTTTTGTGGG+TGG | - | chr8_3:55241710-55241729 | Msa1296220:CDS | 35.0% |
| TAGTTAGTCATAAGGTCTGT+AGG | - | chr8_3:55241834-55241853 | Msa1296220:intron | 35.0% | |
| TCAATTCCTTCAATGAAGAG+AGG | - | chr8_3:55241869-55241888 | Msa1296220:intron | 35.0% | |
| AAATCACTATAGTGCTGTAG+TGG | - | chr8_3:55241966-55241985 | Msa1296220:intron | 35.0% | |
| ! | TGTACCAGTGTTGTTAATCA+CGG | + | chr8_3:55242034-55242053 | None:intergenic | 35.0% |
| TGATATACAAGGGAAAAGGA+TGG | + | chr8_3:55242124-55242143 | None:intergenic | 35.0% | |
| GTAGTTTGACTGTAATTTGG+TGG | - | chr8_3:55242193-55242212 | Msa1296220:intron | 35.0% | |
| ! | ATAGAGCTTTTGCTTGCATA+AGG | - | chr8_3:55242265-55242284 | Msa1296220:intron | 35.0% |
| CCATTCTTGTACAAGAAATG+GGG | + | chr8_3:55242368-55242387 | None:intergenic | 35.0% | |
| TTCCTCAAAGAGAAACTCTT+AGG | - | chr8_3:55242410-55242429 | Msa1296220:intron | 35.0% | |
| ! | TCATTTTCAACACAGGATAC+TGG | - | chr8_3:55242482-55242501 | Msa1296220:intron | 35.0% |
| AGTAGAAACTACTTTCAGCA+AGG | - | chr8_3:55242615-55242634 | Msa1296220:intron | 35.0% | |
| ! | ATTTAAGACATGGGCTAAGT+GGG | - | chr8_3:55242686-55242705 | Msa1296220:intron | 35.0% |
| ! | AACTCGTGGTCTTTTAAGCT+CGG | - | chr8_3:55240550-55240569 | Msa1296220:CDS | 40.0% |
| ! | GTCTTTTAAGCTCGGATTTG+TGG | - | chr8_3:55240558-55240577 | Msa1296220:CDS | 40.0% |
| ! | GGTTCAATTTGCTCCTAAAC+AGG | - | chr8_3:55240891-55240910 | Msa1296220:CDS | 40.0% |
| ! | AGCTTGTTTGAAGCCTGTTT+AGG | + | chr8_3:55240907-55240926 | None:intergenic | 40.0% |
| AATATGAGCATCACAACACC+AGG | + | chr8_3:55241051-55241070 | None:intergenic | 40.0% | |
| GCAAACCCTATGAATCTGAA+GGG | - | chr8_3:55241238-55241257 | Msa1296220:intron | 40.0% | |
| CAAACCCTATGAATCTGAAG+GGG | - | chr8_3:55241239-55241258 | Msa1296220:intron | 40.0% | |
| ! | GTTTGCTTGTTGAATTGTGC+AGG | - | chr8_3:55241489-55241508 | Msa1296220:intron | 40.0% |
| CGCATTCACTAACTTCAAAC+AGG | - | chr8_3:55241612-55241631 | Msa1296220:intron | 40.0% | |
| TGAAATGCCACCCACAAAAA+AGG | + | chr8_3:55241720-55241739 | None:intergenic | 40.0% | |
| ACAGGTTTGTGTTAGGATGT+TGG | - | chr8_3:55242217-55242236 | Msa1296220:intron | 40.0% | |
| GGATGTTGGATGTGTTTGTT+TGG | - | chr8_3:55242231-55242250 | Msa1296220:intron | 40.0% | |
| TGGGGATTTCACAATGTCTA+TGG | + | chr8_3:55242350-55242369 | None:intergenic | 40.0% | |
| CCCCATTTCTTGTACAAGAA+TGG | - | chr8_3:55242365-55242384 | Msa1296220:intron | 40.0% | |
| AGCCTAAGAGTTTCTCTTTG+AGG | + | chr8_3:55242415-55242434 | None:intergenic | 40.0% | |
| ! | TTTTCAACACAGGATACTGG+TGG | - | chr8_3:55242485-55242504 | Msa1296220:intron | 40.0% |
| ! | CATTTAAGACATGGGCTAAG+TGG | - | chr8_3:55242685-55242704 | Msa1296220:intron | 40.0% |
| TCTATGGCTGAAATTTGCAG+AGG | - | chr8_3:55242852-55242871 | Msa1296220:five_prime_UTR | 40.0% | |
| CTATGGCTGAAATTTGCAGA+GGG | - | chr8_3:55242853-55242872 | Msa1296220:five_prime_UTR | 40.0% | |
| TATGGCTGAAATTTGCAGAG+GGG | - | chr8_3:55242854-55242873 | Msa1296220:five_prime_UTR | 40.0% | |
| ! | AACTCTGGAGGTAAATGTGA+TGG | - | chr8_3:55242885-55242904 | Msa1296220:five_prime_UTR | 40.0% |
| ! | ACTCTGGAGGTAAATGTGAT+GGG | - | chr8_3:55242886-55242905 | Msa1296220:five_prime_UTR | 40.0% |
| TGCAGCATATCCATTGACAA+CGG | - | chr8_3:55242941-55242960 | Msa1296220:five_prime_UTR | 40.0% | |
| GTGGTCTCTTACTCTCTGAT+TGG | - | chr8_3:55240577-55240596 | Msa1296220:CDS | 45.0% | |
| GGCAAACCCTATGAATCTGA+AGG | - | chr8_3:55241237-55241256 | Msa1296220:intron | 45.0% | |
| ACTGCCCCTTCAGATTCATA+GGG | + | chr8_3:55241246-55241265 | None:intergenic | 45.0% | |
| GACAATGTCGGGGACTAATT+TGG | - | chr8_3:55241375-55241394 | Msa1296220:intron | 45.0% | |
| AATGTCGGGGACTAATTTGG+TGG | - | chr8_3:55241378-55241397 | Msa1296220:intron | 45.0% | |
| CAGCGTATGGAATCATCTGT+GGG | - | chr8_3:55241562-55241581 | Msa1296220:intron | 45.0% | |
| !! | TAAGGTCTGTAGGAGTGCTT+AGG | - | chr8_3:55241844-55241863 | Msa1296220:intron | 45.0% |
| !! | AAGGTCTGTAGGAGTGCTTA+GGG | - | chr8_3:55241845-55241864 | Msa1296220:intron | 45.0% |
| CACTCTCCTCTCTTCATTGA+AGG | + | chr8_3:55241878-55241897 | None:intergenic | 45.0% | |
| CTTCAATGAAGAGAGGAGAG+TGG | - | chr8_3:55241876-55241895 | Msa1296220:intron | 45.0% | |
| ! | CCAGTGTTGTTAATCACGGA+TGG | + | chr8_3:55242030-55242049 | None:intergenic | 45.0% |
| CCATCCGTGATTAACAACAC+TGG | - | chr8_3:55242027-55242046 | Msa1296220:intron | 45.0% | |
| AGGACATGACTAAGACAGCA+TGG | + | chr8_3:55242088-55242107 | None:intergenic | 45.0% | |
| GTCTTAGTCATGTCCTTGCA+TGG | - | chr8_3:55242092-55242111 | Msa1296220:intron | 45.0% | |
| ! | TGACTGTAATTTGGTGGGAC+AGG | - | chr8_3:55242199-55242218 | Msa1296220:intron | 45.0% |
| TGATAGCAAGCACACGTACA+AGG | - | chr8_3:55242722-55242741 | Msa1296220:intron | 45.0% | |
| GATAGCAAGCACACGTACAA+GGG | - | chr8_3:55242723-55242742 | Msa1296220:intron | 45.0% | |
| !! | CGTACAAGGGTCTTTTTCAC+TGG | - | chr8_3:55242736-55242755 | Msa1296220:five_prime_UTR | 45.0% |
| ATGGCTGAAATTTGCAGAGG+GGG | - | chr8_3:55242855-55242874 | Msa1296220:five_prime_UTR | 45.0% | |
| ! | CTCTGGAGGTAAATGTGATG+GGG | - | chr8_3:55242887-55242906 | Msa1296220:five_prime_UTR | 45.0% |
| GCAGCATATCCATTGACAAC+GGG | - | chr8_3:55242942-55242961 | Msa1296220:five_prime_UTR | 45.0% | |
| TCGACAATTCCCGTTGTCAA+TGG | + | chr8_3:55242954-55242973 | None:intergenic | 45.0% | |
| GAAGCTTTGCGTTGCTGGAA+GGG | + | chr8_3:55240460-55240479 | None:intergenic | 50.0% | |
| TGAAGCTTTGCGTTGCTGGA+AGG | + | chr8_3:55240461-55240480 | None:intergenic | 50.0% | |
| AGCTTGAAGCTTTGCGTTGC+TGG | + | chr8_3:55240465-55240484 | None:intergenic | 50.0% | |
| CACTGCCCCTTCAGATTCAT+AGG | + | chr8_3:55241247-55241266 | None:intergenic | 50.0% | |
| TGAGCTTCTTGCTGCTAAGC+AGG | - | chr8_3:55241270-55241289 | Msa1296220:intron | 50.0% | |
| GCAGCGTATGGAATCATCTG+TGG | - | chr8_3:55241561-55241580 | Msa1296220:intron | 50.0% | |
| AGAGGAGAGTGGAGTTCAGA+TGG | - | chr8_3:55241887-55241906 | Msa1296220:intron | 50.0% | |
| !! | ATATCGGCTCTGCAGTGTTG+TGG | - | chr8_3:55241934-55241953 | Msa1296220:intron | 50.0% |
| AGGATGGAAGACACCATGCA+AGG | + | chr8_3:55242108-55242127 | None:intergenic | 50.0% | |
| TGGTGGGACAGGTTTGTGTT+AGG | - | chr8_3:55242210-55242229 | Msa1296220:intron | 50.0% | |
| !! | CGTGTGCTTGCTATCAACTG+TGG | + | chr8_3:55242718-55242737 | None:intergenic | 50.0% |
| TGGCTGAAATTTGCAGAGGG+GGG | - | chr8_3:55242856-55242875 | Msa1296220:five_prime_UTR | 50.0% | |
| GTTGTCGAACGCTGGTGGAA+CGG | + | chr8_3:55240428-55240447 | None:intergenic | 55.0% | |
| GATGAGCAGTTGTCGAACGC+TGG | + | chr8_3:55240436-55240455 | None:intergenic | 55.0% | |
| TGAAATTTGCAGAGGGGGGC+AGG | - | chr8_3:55242860-55242879 | Msa1296220:five_prime_UTR | 55.0% | |
| GAAATTTGCAGAGGGGGGCA+GGG | - | chr8_3:55242861-55242880 | Msa1296220:five_prime_UTR | 55.0% | |
| AAATTTGCAGAGGGGGGCAG+GGG | - | chr8_3:55242862-55242881 | Msa1296220:five_prime_UTR | 55.0% | |
| GAGCAGTTGTCGAACGCTGG+TGG | + | chr8_3:55240433-55240452 | None:intergenic | 60.0% | |
| GTCGAACGCTGGTGGAACGG+CGG | + | chr8_3:55240425-55240444 | None:intergenic | 65.0% | |
| !! | GCGGTGGAGCGGTGGTGGAA+CGG | + | chr8_3:55240406-55240425 | None:intergenic | 70.0% |
| CTGGTGGAACGGCGGTGGAG+CGG | + | chr8_3:55240417-55240436 | None:intergenic | 70.0% | |
| GAACGCTGGTGGAACGGCGG+TGG | + | chr8_3:55240422-55240441 | None:intergenic | 70.0% | |
| AGAGGGGGGCAGGGGAACTC+TGG | - | chr8_3:55242870-55242889 | Msa1296220:five_prime_UTR | 70.0% | |
| GAACGGCGGTGGAGCGGTGG+TGG | + | chr8_3:55240411-55240430 | None:intergenic | 75.0% | |
| GTGGAACGGCGGTGGAGCGG+TGG | + | chr8_3:55240414-55240433 | None:intergenic | 75.0% | |
| GGGGGGCAGGGGAACTCTGG+AGG | - | chr8_3:55242873-55242892 | Msa1296220:five_prime_UTR | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_3 | gene | 55240338 | 55242992 | 55240338 | ID=Msa1296220;Name=Msa1296220 |
| chr8_3 | mRNA | 55240338 | 55242992 | 55240338 | ID=Msa1296220-mRNA-1;Parent=Msa1296220;Name=Msa1296220-mRNA-1;_AED=0.28;_eAED=0.28;_QI=321|0.83|0.71|1|0.5|0.42|7|0|244 |
| chr8_3 | exon | 55240338 | 55240486 | 55240338 | ID=Msa1296220-mRNA-1:exon:15849;Parent=Msa1296220-mRNA-1 |
| chr8_3 | exon | 55240493 | 55240713 | 55240493 | ID=Msa1296220-mRNA-1:exon:15848;Parent=Msa1296220-mRNA-1 |
| chr8_3 | exon | 55240800 | 55240996 | 55240800 | ID=Msa1296220-mRNA-1:exon:15847;Parent=Msa1296220-mRNA-1 |
| chr8_3 | exon | 55241697 | 55241819 | 55241697 | ID=Msa1296220-mRNA-1:exon:15846;Parent=Msa1296220-mRNA-1 |
| chr8_3 | exon | 55242039 | 55242092 | 55242039 | ID=Msa1296220-mRNA-1:exon:15845;Parent=Msa1296220-mRNA-1 |
| chr8_3 | exon | 55242571 | 55242621 | 55242571 | ID=Msa1296220-mRNA-1:exon:15844;Parent=Msa1296220-mRNA-1 |
| chr8_3 | exon | 55242732 | 55242992 | 55242732 | ID=Msa1296220-mRNA-1:exon:15843;Parent=Msa1296220-mRNA-1 |
| chr8_3 | five_prime_UTR | 55242732 | 55242992 | 55242732 | ID=Msa1296220-mRNA-1:five_prime_utr;Parent=Msa1296220-mRNA-1 |
| chr8_3 | five_prime_UTR | 55242571 | 55242621 | 55242571 | ID=Msa1296220-mRNA-1:five_prime_utr;Parent=Msa1296220-mRNA-1 |
| chr8_3 | five_prime_UTR | 55242084 | 55242092 | 55242084 | ID=Msa1296220-mRNA-1:five_prime_utr;Parent=Msa1296220-mRNA-1 |
| chr8_3 | CDS | 55242039 | 55242083 | 55242039 | ID=Msa1296220-mRNA-1:cds;Parent=Msa1296220-mRNA-1 |
| chr8_3 | CDS | 55241697 | 55241819 | 55241697 | ID=Msa1296220-mRNA-1:cds;Parent=Msa1296220-mRNA-1 |
| chr8_3 | CDS | 55240800 | 55240996 | 55240800 | ID=Msa1296220-mRNA-1:cds;Parent=Msa1296220-mRNA-1 |
| chr8_3 | CDS | 55240493 | 55240713 | 55240493 | ID=Msa1296220-mRNA-1:cds;Parent=Msa1296220-mRNA-1 |
| chr8_3 | CDS | 55240338 | 55240486 | 55240338 | ID=Msa1296220-mRNA-1:cds;Parent=Msa1296220-mRNA-1 |
| Gene Sequence |
| Protein sequence |
