Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0871290 | XP_013451347.1 | 97.059 | 68 | 2 | 0 | 19 | 86 | 212 | 279 | 7.67e-38 | 137 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0871290 | sp|P57758|CTNS_ARATH | 62.069 | 58 | 20 | 2 | 19 | 76 | 210 | 265 | 2.12e-15 | 71.6 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0871290 | A0A072U6W8 | 97.059 | 68 | 2 | 0 | 19 | 86 | 212 | 279 | 3.66e-38 | 137 |
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa0871290 | Msa0942310 | 0.899508 | 1.848747e-77 | -8.615850e-47 |
Msa0871290 | Msa0979250 | 0.912603 | 1.612228e-83 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0871290 | MtrunA17_Chr6g0458341 | 97.059 | 68 | 2 | 0 | 19 | 86 | 212 | 279 | 7.05e-42 | 137 |
Msa0871290 | MtrunA17_Chr7g0230151 | 50.000 | 78 | 37 | 2 | 10 | 86 | 201 | 277 | 7.94e-19 | 77.8 |
Msa0871290 | MtrunA17_Chr7g0230141 | 51.471 | 68 | 26 | 2 | 19 | 86 | 210 | 270 | 3.91e-14 | 65.1 |
Msa0871290 | MtrunA17_Chr6g0458381 | 47.541 | 61 | 30 | 1 | 19 | 79 | 120 | 178 | 4.74e-12 | 58.5 |
Msa0871290 | MtrunA17_Chr6g0458361 | 42.373 | 59 | 34 | 0 | 10 | 68 | 188 | 246 | 3.54e-11 | 57.0 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0871290 | AT5G40670.1 | 62.069 | 58 | 20 | 2 | 19 | 76 | 210 | 265 | 2.16e-16 | 71.6 |
Find 32 sgRNAs with CRISPR-Local
Find 110 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
AACCATTCTCCAAATCTTTA+AGG | 0.070760 | 6_1:-6177888 | Msa0871290:three_prime_UTR |
GACTCTTGGGTGAATTTCTC+TGG | 0.292974 | 6_1:-6178647 | Msa0871290:CDS |
GTTGTAAGGCCTTAAAGATT+TGG | 0.308440 | 6_1:+6177879 | None:intergenic |
ATAATTCTCTTCTTGTTGTA+AGG | 0.365692 | 6_1:+6177865 | None:intergenic |
ATGTTGTCATCGAGTTTAGA+AGG | 0.377471 | 6_1:+6178242 | None:intergenic |
CATCCCCACTAACCTCATAA+TGG | 0.393898 | 6_1:+6178056 | None:intergenic |
GGCCTTAAAGATTTGGAGAA+TGG | 0.402110 | 6_1:+6177886 | None:intergenic |
TTTGAATTTGTAATTATGTT+TGG | 0.432269 | 6_1:-6178169 | Msa0871290:exon |
ATCCCCACTAACCTCATAAT+GGG | 0.432323 | 6_1:+6178057 | None:intergenic |
GTGAATTTCTCTGGGAACCT+TGG | 0.434548 | 6_1:-6178638 | Msa0871290:CDS |
TGGAAAAGTATTGTTATCTC+TGG | 0.434586 | 6_1:-6178618 | Msa0871290:intron |
GATTTGTGAAAGTGATTGTT+TGG | 0.437640 | 6_1:-6177963 | Msa0871290:three_prime_UTR |
TCAGCCACCGGCACATTTGA+AGG | 0.441029 | 6_1:+6178197 | None:intergenic |
GGTTAGTGGGGATGCTCTCT+TGG | 0.442986 | 6_1:-6178047 | Msa0871290:three_prime_UTR |
GAACTGCGTGCTATACAGAT+AGG | 0.448918 | 6_1:-6178022 | Msa0871290:three_prime_UTR |
TTGGAAGCTGTGAATATCAT+TGG | 0.462634 | 6_1:-6177944 | Msa0871290:three_prime_UTR |
AATCCCCACCAACCTTATCA+TGG | 0.468507 | 6_1:+6178082 | None:intergenic |
TTTCCCATTATGAGGTTAGT+GGG | 0.483975 | 6_1:-6178060 | Msa0871290:three_prime_UTR |
ACAAGAAGAGAATTATACTT+TGG | 0.492317 | 6_1:-6177858 | Msa0871290:three_prime_UTR |
CACACTAGCTAAAATCATAC+AGG | 0.502798 | 6_1:+6178114 | None:intergenic |
TTCCCATGATAAGGTTGGTG+GGG | 0.521220 | 6_1:-6178085 | Msa0871290:three_prime_UTR |
CAAGTCTCCTTCAAATGTGC+CGG | 0.533047 | 6_1:-6178204 | Msa0871290:CDS |
ACTCTTGGGTGAATTTCTCT+GGG | 0.540084 | 6_1:-6178646 | Msa0871290:CDS |
ATCCCCACCAACCTTATCAT+GGG | 0.575454 | 6_1:+6178083 | None:intergenic |
GTCTCCTTCAAATGTGCCGG+TGG | 0.578990 | 6_1:-6178201 | Msa0871290:CDS |
TTTCCCATGATAAGGTTGGT+GGG | 0.581678 | 6_1:-6178086 | Msa0871290:three_prime_UTR |
AACTGCGTGCTATACAGATA+GGG | 0.583379 | 6_1:-6178021 | Msa0871290:three_prime_UTR |
CATTTGAAGGAGACTTGATG+AGG | 0.590184 | 6_1:+6178210 | None:intergenic |
TTCCCATTATGAGGTTAGTG+GGG | 0.606252 | 6_1:-6178059 | Msa0871290:three_prime_UTR |
ATCGACATTTGTCATAATCG+AGG | 0.627549 | 6_1:-6177998 | Msa0871290:three_prime_UTR |
ATTTGAAGGAGACTTGATGA+GGG | 0.629173 | 6_1:+6178211 | None:intergenic |
TTTGAAGGAGACTTGATGAG+GGG | 0.680455 | 6_1:+6178212 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | TATATAATGTAAACATTTTC+AGG | - | chr6_1:6178317-6178336 | Msa0871290:CDS | 15.0% |
!! | TTTGAATTTGTAATTATGTT+TGG | - | chr6_1:6178490-6178509 | Msa0871290:intron | 15.0% |
!!! | TATATAATGTAAACATTTTC+AGG | - | chr6_1:6178317-6178336 | Msa0871290:CDS | 15.0% |
!! | TTTGAATTTGTAATTATGTT+TGG | - | chr6_1:6178490-6178509 | Msa0871290:intron | 15.0% |
!! | ATGTTACTATAATGTGAATT+TGG | + | chr6_1:6177927-6177946 | None:intergenic | 20.0% |
!!! | TTTTTTTATTCTAGACTCTT+GGG | - | chr6_1:6177999-6178018 | Msa0871290:three_prime_UTR | 20.0% |
!!! | TATTCTAATGCAAATTTTGT+AGG | + | chr6_1:6178148-6178167 | None:intergenic | 20.0% |
!! | ATGTTACTATAATGTGAATT+TGG | + | chr6_1:6177927-6177946 | None:intergenic | 20.0% |
!!! | TTTTTTTATTCTAGACTCTT+GGG | - | chr6_1:6177999-6178018 | Msa0871290:three_prime_UTR | 20.0% |
!!! | TATTCTAATGCAAATTTTGT+AGG | + | chr6_1:6178148-6178167 | None:intergenic | 20.0% |
!!! | GTTTTTGAAAACATTGCTTA+AGG | + | chr6_1:6177878-6177897 | None:intergenic | 25.0% |
!!! | CTTTTTTTATTCTAGACTCT+TGG | - | chr6_1:6177998-6178017 | Msa0871290:three_prime_UTR | 25.0% |
! | CAAAATTGAAGTGAATGAAA+AGG | + | chr6_1:6178085-6178104 | None:intergenic | 25.0% |
! | AAGAAGCAGAAACATAAAAA+AGG | + | chr6_1:6178123-6178142 | None:intergenic | 25.0% |
! | TGAAAAATCGATTGCAAAAT+CGG | - | chr6_1:6178235-6178254 | Msa0871290:CDS | 25.0% |
! | ATACACGAGTAAGAAAATTA+AGG | + | chr6_1:6178298-6178317 | None:intergenic | 25.0% |
!!! | ATTGATGATGTTTTCTTTGA+TGG | + | chr6_1:6178393-6178412 | None:intergenic | 25.0% |
!! | ATAATTCTCTTCTTGTTGTA+AGG | + | chr6_1:6178797-6178816 | None:intergenic | 25.0% |
! | ACAAGAAGAGAATTATACTT+TGG | - | chr6_1:6178801-6178820 | Msa0871290:CDS | 25.0% |
!!! | GTTTTTGAAAACATTGCTTA+AGG | + | chr6_1:6177878-6177897 | None:intergenic | 25.0% |
!!! | CTTTTTTTATTCTAGACTCT+TGG | - | chr6_1:6177998-6178017 | Msa0871290:three_prime_UTR | 25.0% |
! | CAAAATTGAAGTGAATGAAA+AGG | + | chr6_1:6178085-6178104 | None:intergenic | 25.0% |
! | AAGAAGCAGAAACATAAAAA+AGG | + | chr6_1:6178123-6178142 | None:intergenic | 25.0% |
! | TGAAAAATCGATTGCAAAAT+CGG | - | chr6_1:6178235-6178254 | Msa0871290:CDS | 25.0% |
! | ATACACGAGTAAGAAAATTA+AGG | + | chr6_1:6178298-6178317 | None:intergenic | 25.0% |
!!! | ATTGATGATGTTTTCTTTGA+TGG | + | chr6_1:6178393-6178412 | None:intergenic | 25.0% |
!! | ATAATTCTCTTCTTGTTGTA+AGG | + | chr6_1:6178797-6178816 | None:intergenic | 25.0% |
! | ACAAGAAGAGAATTATACTT+TGG | - | chr6_1:6178801-6178820 | Msa0871290:CDS | 25.0% |
! | GAGATAACAATACTTTTCCA+AGG | + | chr6_1:6178041-6178060 | None:intergenic | 30.0% |
!! | TGGAAAAGTATTGTTATCTC+TGG | - | chr6_1:6178041-6178060 | Msa0871290:three_prime_UTR | 30.0% |
GAAGTGAATGAAAAGGTAAA+GGG | + | chr6_1:6178078-6178097 | None:intergenic | 30.0% | |
TGAAGTGAATGAAAAGGTAA+AGG | + | chr6_1:6178079-6178098 | None:intergenic | 30.0% | |
GATTTGTGAAAGTGATTGTT+TGG | - | chr6_1:6178696-6178715 | Msa0871290:intron | 30.0% | |
AACCATTCTCCAAATCTTTA+AGG | - | chr6_1:6178771-6178790 | Msa0871290:intron | 30.0% | |
! | GAGATAACAATACTTTTCCA+AGG | + | chr6_1:6178041-6178060 | None:intergenic | 30.0% |
!! | TGGAAAAGTATTGTTATCTC+TGG | - | chr6_1:6178041-6178060 | Msa0871290:three_prime_UTR | 30.0% |
GAAGTGAATGAAAAGGTAAA+GGG | + | chr6_1:6178078-6178097 | None:intergenic | 30.0% | |
TGAAGTGAATGAAAAGGTAA+AGG | + | chr6_1:6178079-6178098 | None:intergenic | 30.0% | |
GATTTGTGAAAGTGATTGTT+TGG | - | chr6_1:6178696-6178715 | Msa0871290:intron | 30.0% | |
AACCATTCTCCAAATCTTTA+AGG | - | chr6_1:6178771-6178790 | Msa0871290:intron | 30.0% | |
TGATGCATCAAGTGATCATT+TGG | + | chr6_1:6177951-6177970 | None:intergenic | 35.0% | |
!! | TTGCAATCGATTTTTCAACC+TGG | + | chr6_1:6178232-6178251 | None:intergenic | 35.0% |
ATGTTGTCATCGAGTTTAGA+AGG | + | chr6_1:6178420-6178439 | None:intergenic | 35.0% | |
ATTTGAAGGAGACTTGATGA+GGG | + | chr6_1:6178451-6178470 | None:intergenic | 35.0% | |
! | ATTCAAACATTTTCAGCCAC+CGG | + | chr6_1:6178477-6178496 | None:intergenic | 35.0% |
CACACTAGCTAAAATCATAC+AGG | + | chr6_1:6178548-6178567 | None:intergenic | 35.0% | |
! | GTGTAGATTTTCCCATGATA+AGG | - | chr6_1:6178565-6178584 | Msa0871290:intron | 35.0% |
! | AGATTTTCCCATGATAAGGT+TGG | - | chr6_1:6178569-6178588 | Msa0871290:intron | 35.0% |
! | TTTTCCCATTATGAGGTTAG+TGG | - | chr6_1:6178598-6178617 | Msa0871290:intron | 35.0% |
TTTCCCATTATGAGGTTAGT+GGG | - | chr6_1:6178599-6178618 | Msa0871290:intron | 35.0% | |
ATCGACATTTGTCATAATCG+AGG | - | chr6_1:6178661-6178680 | Msa0871290:intron | 35.0% | |
TTGGAAGCTGTGAATATCAT+TGG | - | chr6_1:6178715-6178734 | Msa0871290:intron | 35.0% | |
GTTGTAAGGCCTTAAAGATT+TGG | + | chr6_1:6178783-6178802 | None:intergenic | 35.0% | |
TGATGCATCAAGTGATCATT+TGG | + | chr6_1:6177951-6177970 | None:intergenic | 35.0% | |
!! | TTGCAATCGATTTTTCAACC+TGG | + | chr6_1:6178232-6178251 | None:intergenic | 35.0% |
ATGTTGTCATCGAGTTTAGA+AGG | + | chr6_1:6178420-6178439 | None:intergenic | 35.0% | |
ATTTGAAGGAGACTTGATGA+GGG | + | chr6_1:6178451-6178470 | None:intergenic | 35.0% | |
! | ATTCAAACATTTTCAGCCAC+CGG | + | chr6_1:6178477-6178496 | None:intergenic | 35.0% |
CACACTAGCTAAAATCATAC+AGG | + | chr6_1:6178548-6178567 | None:intergenic | 35.0% | |
! | GTGTAGATTTTCCCATGATA+AGG | - | chr6_1:6178565-6178584 | Msa0871290:intron | 35.0% |
! | AGATTTTCCCATGATAAGGT+TGG | - | chr6_1:6178569-6178588 | Msa0871290:intron | 35.0% |
! | TTTTCCCATTATGAGGTTAG+TGG | - | chr6_1:6178598-6178617 | Msa0871290:intron | 35.0% |
TTTCCCATTATGAGGTTAGT+GGG | - | chr6_1:6178599-6178618 | Msa0871290:intron | 35.0% | |
ATCGACATTTGTCATAATCG+AGG | - | chr6_1:6178661-6178680 | Msa0871290:intron | 35.0% | |
TTGGAAGCTGTGAATATCAT+TGG | - | chr6_1:6178715-6178734 | Msa0871290:intron | 35.0% | |
GTTGTAAGGCCTTAAAGATT+TGG | + | chr6_1:6178783-6178802 | None:intergenic | 35.0% | |
ACTCTTGGGTGAATTTCTCT+GGG | - | chr6_1:6178013-6178032 | Msa0871290:three_prime_UTR | 40.0% | |
TAGACATCGATGTAGTTACC+AGG | - | chr6_1:6178211-6178230 | Msa0871290:CDS | 40.0% | |
TTTGAAGGAGACTTGATGAG+GGG | + | chr6_1:6178450-6178469 | None:intergenic | 40.0% | |
CATTTGAAGGAGACTTGATG+AGG | + | chr6_1:6178452-6178471 | None:intergenic | 40.0% | |
! | TTTTCCCATGATAAGGTTGG+TGG | - | chr6_1:6178572-6178591 | Msa0871290:intron | 40.0% |
! | TTTCCCATGATAAGGTTGGT+GGG | - | chr6_1:6178573-6178592 | Msa0871290:intron | 40.0% |
TTCCCATTATGAGGTTAGTG+GGG | - | chr6_1:6178600-6178619 | Msa0871290:intron | 40.0% | |
ATCCCCACTAACCTCATAAT+GGG | + | chr6_1:6178605-6178624 | None:intergenic | 40.0% | |
AACTGCGTGCTATACAGATA+GGG | - | chr6_1:6178638-6178657 | Msa0871290:CDS | 40.0% | |
GGCCTTAAAGATTTGGAGAA+TGG | + | chr6_1:6178776-6178795 | None:intergenic | 40.0% | |
ACTCTTGGGTGAATTTCTCT+GGG | - | chr6_1:6178013-6178032 | Msa0871290:three_prime_UTR | 40.0% | |
TAGACATCGATGTAGTTACC+AGG | - | chr6_1:6178211-6178230 | Msa0871290:CDS | 40.0% | |
TTTGAAGGAGACTTGATGAG+GGG | + | chr6_1:6178450-6178469 | None:intergenic | 40.0% | |
CATTTGAAGGAGACTTGATG+AGG | + | chr6_1:6178452-6178471 | None:intergenic | 40.0% | |
! | TTTTCCCATGATAAGGTTGG+TGG | - | chr6_1:6178572-6178591 | Msa0871290:intron | 40.0% |
! | TTTCCCATGATAAGGTTGGT+GGG | - | chr6_1:6178573-6178592 | Msa0871290:intron | 40.0% |
TTCCCATTATGAGGTTAGTG+GGG | - | chr6_1:6178600-6178619 | Msa0871290:intron | 40.0% | |
ATCCCCACTAACCTCATAAT+GGG | + | chr6_1:6178605-6178624 | None:intergenic | 40.0% | |
AACTGCGTGCTATACAGATA+GGG | - | chr6_1:6178638-6178657 | Msa0871290:CDS | 40.0% | |
GGCCTTAAAGATTTGGAGAA+TGG | + | chr6_1:6178776-6178795 | None:intergenic | 40.0% | |
GACTCTTGGGTGAATTTCTC+TGG | - | chr6_1:6178012-6178031 | Msa0871290:three_prime_UTR | 45.0% | |
! | GTGAATTTCTCTGGGAACCT+TGG | - | chr6_1:6178021-6178040 | Msa0871290:three_prime_UTR | 45.0% |
CAAGTCTCCTTCAAATGTGC+CGG | - | chr6_1:6178455-6178474 | Msa0871290:intron | 45.0% | |
!! | TTCCCATGATAAGGTTGGTG+GGG | - | chr6_1:6178574-6178593 | Msa0871290:intron | 45.0% |
ATCCCCACCAACCTTATCAT+GGG | + | chr6_1:6178579-6178598 | None:intergenic | 45.0% | |
AATCCCCACCAACCTTATCA+TGG | + | chr6_1:6178580-6178599 | None:intergenic | 45.0% | |
! | GTGGGGATTTTCCCATTATG+AGG | - | chr6_1:6178591-6178610 | Msa0871290:intron | 45.0% |
CATCCCCACTAACCTCATAA+TGG | + | chr6_1:6178606-6178625 | None:intergenic | 45.0% | |
GAACTGCGTGCTATACAGAT+AGG | - | chr6_1:6178637-6178656 | Msa0871290:CDS | 45.0% | |
GACTCTTGGGTGAATTTCTC+TGG | - | chr6_1:6178012-6178031 | Msa0871290:three_prime_UTR | 45.0% | |
! | GTGAATTTCTCTGGGAACCT+TGG | - | chr6_1:6178021-6178040 | Msa0871290:three_prime_UTR | 45.0% |
CAAGTCTCCTTCAAATGTGC+CGG | - | chr6_1:6178455-6178474 | Msa0871290:intron | 45.0% | |
!! | TTCCCATGATAAGGTTGGTG+GGG | - | chr6_1:6178574-6178593 | Msa0871290:intron | 45.0% |
ATCCCCACCAACCTTATCAT+GGG | + | chr6_1:6178579-6178598 | None:intergenic | 45.0% | |
AATCCCCACCAACCTTATCA+TGG | + | chr6_1:6178580-6178599 | None:intergenic | 45.0% | |
! | GTGGGGATTTTCCCATTATG+AGG | - | chr6_1:6178591-6178610 | Msa0871290:intron | 45.0% |
CATCCCCACTAACCTCATAA+TGG | + | chr6_1:6178606-6178625 | None:intergenic | 45.0% | |
GAACTGCGTGCTATACAGAT+AGG | - | chr6_1:6178637-6178656 | Msa0871290:CDS | 45.0% | |
GTCTCCTTCAAATGTGCCGG+TGG | - | chr6_1:6178458-6178477 | Msa0871290:intron | 55.0% | |
TCAGCCACCGGCACATTTGA+AGG | + | chr6_1:6178465-6178484 | None:intergenic | 55.0% | |
GGTTAGTGGGGATGCTCTCT+TGG | - | chr6_1:6178612-6178631 | Msa0871290:intron | 55.0% | |
GTCTCCTTCAAATGTGCCGG+TGG | - | chr6_1:6178458-6178477 | Msa0871290:intron | 55.0% | |
TCAGCCACCGGCACATTTGA+AGG | + | chr6_1:6178465-6178484 | None:intergenic | 55.0% | |
GGTTAGTGGGGATGCTCTCT+TGG | - | chr6_1:6178612-6178631 | Msa0871290:intron | 55.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr6_1 | gene | 6177855 | 6178826 | 6177855 | ID=Msa0871290;Name=Msa0871290 |
chr6_1 | mRNA | 6177855 | 6178826 | 6177855 | ID=Msa0871290-mRNA-1;Parent=Msa0871290;Name=Msa0871290-mRNA-1;_AED=0.29;_eAED=0.29;_QI=0|0.5|0.33|0.66|0|0.66|3|332|86 |
chr6_1 | exon | 6177855 | 6178342 | 6177855 | ID=Msa0871290-mRNA-1:exon:1912;Parent=Msa0871290-mRNA-1 |
chr6_1 | exon | 6178619 | 6178668 | 6178619 | ID=Msa0871290-mRNA-1:exon:1911;Parent=Msa0871290-mRNA-1 |
chr6_1 | exon | 6178772 | 6178826 | 6178772 | ID=Msa0871290-mRNA-1:exon:1910;Parent=Msa0871290-mRNA-1 |
chr6_1 | CDS | 6178772 | 6178826 | 6178772 | ID=Msa0871290-mRNA-1:cds;Parent=Msa0871290-mRNA-1 |
chr6_1 | CDS | 6178619 | 6178668 | 6178619 | ID=Msa0871290-mRNA-1:cds;Parent=Msa0871290-mRNA-1 |
chr6_1 | CDS | 6178187 | 6178342 | 6178187 | ID=Msa0871290-mRNA-1:cds;Parent=Msa0871290-mRNA-1 |
chr6_1 | three_prime_UTR | 6177855 | 6178186 | 6177855 | ID=Msa0871290-mRNA-1:three_prime_utr;Parent=Msa0871290-mRNA-1 |
Gene Sequence |
Protein sequence |