AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0942310

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0942310 MtrunA17_Chr6g0458341 98.208 279 5 0 1 279 1 279 0.0 562
Msa0942310 MtrunA17_Chr7g0230151 62.094 277 103 2 4 279 2 277 2.22e-130 370
Msa0942310 MtrunA17_Chr7g0230141 61.232 276 100 2 4 279 2 270 2.24e-118 340
Msa0942310 MtrunA17_Chr6g0458361 57.658 222 92 1 42 261 25 246 3.76e-87 260
Msa0942310 MtrunA17_Chr6g0458381 50.279 179 65 2 116 272 2 178 8.03e-56 178
Msa0942310 MtrunA17_Chr6g0458371 52.143 140 65 1 6 145 4 141 9.36e-42 141
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0942310 AT5G40670.1 62.030 266 99 2 4 269 2 265 3.38e-118 340

Find 88 sgRNAs with CRISPR-Local

Find 589 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTTCACTTATTGAGTTTATA+AGG 0.281781 6_3:-16944149 None:intergenic
TGATATTGAAACCGAACATT+AGG 0.283373 6_3:-16944557 None:intergenic
GACTCTTGGGTGAATTTCTC+TGG 0.292974 6_3:+16951787 Msa0942310:intron
TCCCTTCCAAATCTTGGCTT+TGG 0.312529 6_3:+16950860 Msa0942310:CDS
GTTGTAAGGTCTTAAAGATT+TGG 0.318112 6_3:-16952557 None:intergenic
CAGCACAATGCAAGTAGTTC+TGG 0.332273 6_3:+16951402 Msa0942310:intron
AAAATAGCATACACCGTGTT+TGG 0.343855 6_3:+16944295 Msa0942310:CDS
AATTAGCCAAAGCCAAGATT+TGG 0.350379 6_3:-16950866 None:intergenic
TAGCATTCCCTTCCAAATCT+TGG 0.354878 6_3:+16950854 Msa0942310:CDS
ATAATTCTCTTCTTGTTGTA+AGG 0.370425 6_3:-16952571 None:intergenic
ATGTTGTCATCGAGTTTAGA+AGG 0.377471 6_3:-16952194 None:intergenic
GGTCTTAAAGATTTGGAGAA+TGG 0.388474 6_3:-16952550 None:intergenic
CATCCCCACTAACCTCATAA+TGG 0.393898 6_3:-16952380 None:intergenic
ATTCGGCTTCTAGTGTTACC+TGG 0.410697 6_3:+16952658 Msa0942310:three_prime_UTR
GATATTGAAACCGAACATTA+GGG 0.417722 6_3:-16944556 None:intergenic
GTTCCAAGTTGCAATTTATG+AGG 0.419902 6_3:+16946285 Msa0942310:CDS
CCATTCCTCCACAGAAATCA+AGG 0.431521 6_3:-16951628 None:intergenic
TTTGAATTTGTAATTATGTT+TGG 0.432269 6_3:+16952267 Msa0942310:exon
ATCCCCACTAACCTCATAAT+GGG 0.432323 6_3:-16952379 None:intergenic
GTGAATTTCTCTGGGAACCT+TGG 0.434548 6_3:+16951796 Msa0942310:CDS
TGGAAAAGTATTGTTATCTC+TGG 0.434586 6_3:+16951816 Msa0942310:CDS
GATTTGTGAAAGTGATTGTT+TGG 0.437640 6_3:+16952473 Msa0942310:three_prime_UTR
TCAGCCACCGGCACATTTGA+AGG 0.441029 6_3:-16952239 None:intergenic
GGTTAGTGGGGATGCTCTCT+TGG 0.442986 6_3:+16952389 Msa0942310:three_prime_UTR
GAACTGCGTGCTATACAGAT+AGG 0.448918 6_3:+16952414 Msa0942310:three_prime_UTR
TGTACTTTAGCCCTAATGTT+CGG 0.449324 6_3:+16944546 Msa0942310:CDS
TTGGAAGCTGTGAATATCAT+TGG 0.462634 6_3:+16952492 Msa0942310:three_prime_UTR
GAGGAGGTACAAGGTATGTT+TGG 0.462735 6_3:-16944510 None:intergenic
AATATCTTCCAACTTCTATG+AGG 0.463232 6_3:-16944213 None:intergenic
AATAATTCCCTCATAGAAGT+TGG 0.464424 6_3:+16944205 Msa0942310:five_prime_UTR
AATCCCCACCAACCTTATCA+TGG 0.468507 6_3:-16952354 None:intergenic
ATATATTTATTATCATAAGA+TGG 0.474215 6_3:+16944243 Msa0942310:exon
TTTCCCATTATGAGGTTAGT+GGG 0.483975 6_3:+16952376 Msa0942310:three_prime_UTR
ACAAGAAGAGAATTATACTT+TGG 0.492317 6_3:+16952578 Msa0942310:three_prime_UTR
TCTTGAACTACTCAAGGAAA+AGG 0.494034 6_3:+16944365 Msa0942310:CDS
AGCACAGATGGATTTAGCAT+TGG 0.502304 6_3:+16951596 Msa0942310:CDS
CACACTAGCTAAAATCATAC+AGG 0.502798 6_3:-16952322 None:intergenic
CCTTGATTTCTGTGGAGGAA+TGG 0.503924 6_3:+16951628 Msa0942310:CDS
TTTGGAAGGGAATGCTATGA+AGG 0.505353 6_3:-16950848 None:intergenic
AAATATGTGTGCAGATTGTA+TGG 0.509521 6_3:+16952620 Msa0942310:three_prime_UTR
TTCATGATCAAGAGCACAGA+TGG 0.515076 6_3:+16951584 Msa0942310:CDS
GCAACGTCATTTGCAGCTAC+AGG 0.516019 6_3:-16946223 None:intergenic
GAGTAGTTCAAGATAAATTG+AGG 0.516214 6_3:-16944355 None:intergenic
TAGCATACACCGTGTTTGGA+TGG 0.518940 6_3:+16944299 Msa0942310:CDS
TTCCCATGATAAGGTTGGTG+GGG 0.521220 6_3:+16952351 Msa0942310:three_prime_UTR
GGCTAAAGAAGGCTCCCATT+CGG 0.522238 6_3:+16952641 Msa0942310:three_prime_UTR
AATTTATCTTGAACTACTCA+AGG 0.528532 6_3:+16944359 Msa0942310:CDS
GGAGTGACTCCATGCCTGAT+GGG 0.530228 6_3:-16952689 None:intergenic
CAAGTCTCCTTCAAATGTGC+CGG 0.533047 6_3:+16952232 Msa0942310:CDS
ACTCTTGGGTGAATTTCTCT+GGG 0.540084 6_3:+16951788 Msa0942310:CDS
AGGAGTGACTCCATGCCTGA+TGG 0.540502 6_3:-16952690 None:intergenic
GTTTGAAATTGTAGTGTGGT+GGG 0.544965 6_3:+16944455 Msa0942310:intron
CAAAACAGCATGTGTTGAGA+AGG 0.545875 6_3:-16946245 None:intergenic
GGTAACACTAGAAGCCGAAT+GGG 0.548092 6_3:-16952655 None:intergenic
AACTATCAAATATATTCCAC+AGG 0.552047 6_3:+16951426 Msa0942310:CDS
AACATTAGGGCTAAAGTACA+AGG 0.554362 6_3:-16944543 None:intergenic
TTCGGCTTCTAGTGTTACCT+GGG 0.559215 6_3:+16952659 Msa0942310:three_prime_UTR
GCCAAAGCCAAGATTTGGAA+GGG 0.574825 6_3:-16950861 None:intergenic
ACTGTGGTGTGGATTACTGT+TGG 0.575250 6_3:+16950817 Msa0942310:CDS
ATCCCCACCAACCTTATCAT+GGG 0.575454 6_3:-16952353 None:intergenic
AGCCAAAGCCAAGATTTGGA+AGG 0.577315 6_3:-16950862 None:intergenic
AATGGCAAACTATGCTCAGA+TGG 0.577664 6_3:+16951646 Msa0942310:CDS
GTCTCCTTCAAATGTGCCGG+TGG 0.578990 6_3:+16952235 Msa0942310:CDS
AACTTGGAACAATAAGACTA+AGG 0.579059 6_3:-16946272 None:intergenic
AATGTGTTCCTTGATTTCTG+TGG 0.579157 6_3:+16951620 Msa0942310:CDS
ATACCTCATAAATTGCAACT+TGG 0.579374 6_3:-16946288 None:intergenic
ATAAGATGGAGGAGACATCA+TGG 0.580068 6_3:+16944257 Msa0942310:exon
TTTCCCATGATAAGGTTGGT+GGG 0.581678 6_3:+16952350 Msa0942310:three_prime_UTR
AACTGCGTGCTATACAGATA+GGG 0.583379 6_3:+16952415 Msa0942310:three_prime_UTR
ATATCTTCCAACTTCTATGA+GGG 0.584001 6_3:-16944212 None:intergenic
GCAGATTGTATGGCTAAAGA+AGG 0.587940 6_3:+16952630 Msa0942310:three_prime_UTR
CATTTGAAGGAGACTTGATG+AGG 0.590184 6_3:-16952226 None:intergenic
GTGTTCCTTGATTTCTGTGG+AGG 0.594358 6_3:+16951623 Msa0942310:CDS
ACAAGGAAGCATTGTAGAGG+AGG 0.597921 6_3:-16944526 None:intergenic
AGGTAACACTAGAAGCCGAA+TGG 0.600450 6_3:-16952656 None:intergenic
GAGTGACTCCATGCCTGATG+GGG 0.606147 6_3:-16952688 None:intergenic
TTCCCATTATGAGGTTAGTG+GGG 0.606252 6_3:+16952377 Msa0942310:three_prime_UTR
AGTTTGAAATTGTAGTGTGG+TGG 0.606389 6_3:+16944454 Msa0942310:intron
AGCATTGTAGAGGAGGTACA+AGG 0.622979 6_3:-16944519 None:intergenic
ATCGACATTTGTCATAATCG+AGG 0.627549 6_3:+16952438 Msa0942310:three_prime_UTR
ATTTGAAGGAGACTTGATGA+GGG 0.629173 6_3:-16952225 None:intergenic
AGTACAAGGAAGCATTGTAG+AGG 0.631485 6_3:-16944529 None:intergenic
TATTTATTATCATAAGATGG+AGG 0.657150 6_3:+16944246 Msa0942310:exon
AGTGACTCCATGCCTGATGG+GGG 0.665374 6_3:-16952687 None:intergenic
AAAAGCAATCCATCCAAACA+CGG 0.666967 6_3:-16944308 None:intergenic
TGGGAATCATCACTGTGGTG+TGG 0.672658 6_3:+16950806 Msa0942310:CDS
TTTGAAGGAGACTTGATGAG+GGG 0.680455 6_3:-16952224 None:intergenic
CACAATGGGAATCATCACTG+TGG 0.754261 6_3:+16950801 Msa0942310:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATATATTTATTATCATAAGA+TGG + chr6_3:16944243-16944262 Msa0942310:exon 10.0%
!! TATAAAATTTGAAAAATACA+TGG + chr6_3:16945784-16945803 Msa0942310:intron 10.0%
!!! TTTTTTTGAATTTTACATAA+AGG - chr6_3:16945812-16945831 None:intergenic 10.0%
!! GTAAAATTCAAAAAAATAAA+TGG + chr6_3:16945816-16945835 Msa0942310:intron 10.0%
!!! CAAATTAAATTTTTAATCTT+TGG - chr6_3:16948179-16948198 None:intergenic 10.0%
!! CAAAGATTAAAAATTTAATT+TGG + chr6_3:16948177-16948196 Msa0942310:intron 10.0%
!! TTTATAATCTAAATTACATA+TGG - chr6_3:16949506-16949525 None:intergenic 10.0%
!! TTATGCTATAAAATTTAAAA+AGG + chr6_3:16949851-16949870 Msa0942310:intron 10.0%
!! TTAAAAAATTTAAGAGTTTA+AGG + chr6_3:16950597-16950616 Msa0942310:intron 10.0%
!!! TTATAAGTAAATTTTTTTGT+AGG + chr6_3:16950656-16950675 Msa0942310:intron 10.0%
!!! TATAAGTAAATTTTTTTGTA+GGG + chr6_3:16950657-16950676 Msa0942310:intron 10.0%
!! TTTCAATATCATCAAAAATA+TGG + chr6_3:16944569-16944588 Msa0942310:CDS 15.0%
!! ACTTATTAAAGTAAATAACT+AGG - chr6_3:16944786-16944805 None:intergenic 15.0%
!!! ATTTACTTTAAAATGAGTTT+AGG - chr6_3:16944878-16944897 None:intergenic 15.0%
!! AATGTAAAAAGAAAAAGAAA+AGG + chr6_3:16945110-16945129 Msa0942310:intron 15.0%
!!! TAAACATATTGTATATTTTG+TGG + chr6_3:16945186-16945205 Msa0942310:intron 15.0%
!!! TTTGTCAAAAAAAATTTGTT+TGG + chr6_3:16946348-16946367 Msa0942310:intron 15.0%
!! ACTTATCATTATATATAAGT+TGG + chr6_3:16946371-16946390 Msa0942310:intron 15.0%
!! TGAAATGAGAAAAAAAAAAT+GGG - chr6_3:16946522-16946541 None:intergenic 15.0%
!! TTGAAATGAGAAAAAAAAAA+TGG - chr6_3:16946523-16946542 None:intergenic 15.0%
!! AAATTAAATAGGAAAATGTT+TGG - chr6_3:16946575-16946594 None:intergenic 15.0%
!!! AAACATTTTCCTATTTAATT+TGG + chr6_3:16946574-16946593 Msa0942310:intron 15.0%
!! TTACTATTACCAAATTAAAT+AGG - chr6_3:16946586-16946605 None:intergenic 15.0%
!!! TTTAATTTGGTAATAGTAAT+TGG + chr6_3:16946587-16946606 Msa0942310:intron 15.0%
!!! TTAATTTGGTAATAGTAATT+GGG + chr6_3:16946588-16946607 Msa0942310:intron 15.0%
!! TGTTTGATAAGATTAAAAAT+GGG - chr6_3:16947053-16947072 None:intergenic 15.0%
!!! ATTAAATTTTTAATCTTTGG+AGG - chr6_3:16948176-16948195 None:intergenic 15.0%
!! ACCAAAAAATAAAATTCAAA+AGG + chr6_3:16950102-16950121 Msa0942310:intron 15.0%
!!! TCCTTTTGAATTTTATTTTT+TGG - chr6_3:16950106-16950125 None:intergenic 15.0%
!! ACATAATTAATCCAAAAAAA+AGG - chr6_3:16950214-16950233 None:intergenic 15.0%
!!! TTTTGGATTAATTATGTTTT+TGG + chr6_3:16950217-16950236 Msa0942310:intron 15.0%
!! AATGCTATTAAAATTAAGTA+AGG - chr6_3:16950275-16950294 None:intergenic 15.0%
!! AAGCATAAATTAAACAAATT+TGG - chr6_3:16950347-16950366 None:intergenic 15.0%
!!! AATTTTTGCGATATTTTTTT+CGG - chr6_3:16950431-16950450 None:intergenic 15.0%
!! AGATATAAGTAACAAAAATA+TGG - chr6_3:16950466-16950485 None:intergenic 15.0%
!!! TAAACAAAATTTATTTTAGC+AGG + chr6_3:16950625-16950644 Msa0942310:intron 15.0%
!!! AAACAAAATTTATTTTAGCA+GGG + chr6_3:16950626-16950645 Msa0942310:intron 15.0%
!! AAAGCTATTAAAATTAAGTA+AGG + chr6_3:16950686-16950705 Msa0942310:intron 15.0%
!!! TCTTTTTTTGAAATAGAAAA+AGG - chr6_3:16951155-16951174 None:intergenic 15.0%
!!! TATATAATGTAAACATTTTC+AGG + chr6_3:16952094-16952113 Msa0942310:intron 15.0%
!! TTTGAATTTGTAATTATGTT+TGG + chr6_3:16952267-16952286 Msa0942310:exon 15.0%
!! TTTCACTTATTGAGTTTATA+AGG - chr6_3:16944152-16944171 None:intergenic 20.0%
!! TATTTATTATCATAAGATGG+AGG + chr6_3:16944246-16944265 Msa0942310:exon 20.0%
!!! TGAAAGCAAAATTTTTTATG+TGG + chr6_3:16944429-16944448 Msa0942310:intron 20.0%
!! ACACATAAAATAATAGGAAA+AGG - chr6_3:16944659-16944678 None:intergenic 20.0%
!! GAATACACACATAAAATAAT+AGG - chr6_3:16944665-16944684 None:intergenic 20.0%
!!! CATTTTTGATCTAAAAATTG+AGG + chr6_3:16944852-16944871 Msa0942310:intron 20.0%
!!! ACTCATTTTAAAGTAAATTG+TGG + chr6_3:16944880-16944899 Msa0942310:intron 20.0%
!!! CTCATTTTAAAGTAAATTGT+GGG + chr6_3:16944881-16944900 Msa0942310:intron 20.0%
!! TCCATATTTAAGTAATCTTT+GGG - chr6_3:16944912-16944931 None:intergenic 20.0%
!!! CTTTTTACATTTTTCATAAG+CGG - chr6_3:16945101-16945120 None:intergenic 20.0%
!! AAACATATTAGATAAACATG+TGG + chr6_3:16945218-16945237 Msa0942310:intron 20.0%
!! ATATGCATTTATCATTTGTT+TGG + chr6_3:16945298-16945317 Msa0942310:intron 20.0%
!!! TATTTTAAGAACACAAGTTA+GGG - chr6_3:16945363-16945382 None:intergenic 20.0%
!! TGTTCTTAAAATACATGTTA+AGG + chr6_3:16945370-16945389 Msa0942310:intron 20.0%
!!! TTAAGGTATGTTTTAGTTAT+AGG + chr6_3:16945513-16945532 Msa0942310:intron 20.0%
!!! CGCTAATAGAAATTTTATTT+TGG + chr6_3:16945576-16945595 Msa0942310:intron 20.0%
!!! ATAGATTAGTCATATAACTA+AGG - chr6_3:16945711-16945730 None:intergenic 20.0%
!!! AAATTTTATAAATCTCTTGC+GGG - chr6_3:16945774-16945793 None:intergenic 20.0%
!!! CAAATTTTATAAATCTCTTG+CGG - chr6_3:16945775-16945794 None:intergenic 20.0%
!!! ATTTTCTTAAACTATGTCAT+AGG - chr6_3:16946411-16946430 None:intergenic 20.0%
!! ATGACATAGTTTAAGAAAAT+TGG + chr6_3:16946411-16946430 Msa0942310:intron 20.0%
!! TAATCAAATGGTTCAAATTT+GGG - chr6_3:16946797-16946816 None:intergenic 20.0%
!! TTAATCAAATGGTTCAAATT+TGG - chr6_3:16946798-16946817 None:intergenic 20.0%
!!! TTTTTTTTTTATTCAACCCT+TGG - chr6_3:16946822-16946841 None:intergenic 20.0%
!! CTGTTTGATAAGATTAAAAA+TGG - chr6_3:16947054-16947073 None:intergenic 20.0%
!!! TAACTCTATTTTAAACTCAT+GGG - chr6_3:16949351-16949370 None:intergenic 20.0%
!!! TTAACTCTATTTTAAACTCA+TGG - chr6_3:16949352-16949371 None:intergenic 20.0%
!! TTATATTTGATATTTGACGT+CGG - chr6_3:16949409-16949428 None:intergenic 20.0%
!! TTATAAATAACATACTTCTC+CGG + chr6_3:16949519-16949538 Msa0942310:intron 20.0%
!!! TAAGCAAAAATCAACTTTTT+AGG - chr6_3:16949640-16949659 None:intergenic 20.0%
!! GGGAATATTTAGTTAATTAA+TGG + chr6_3:16949678-16949697 Msa0942310:intron 20.0%
!! TTAATTAATGGAAGTTTGAT+TGG + chr6_3:16949690-16949709 Msa0942310:intron 20.0%
!! TATGTAAATTTCAAATCCTT+TGG + chr6_3:16949882-16949901 Msa0942310:intron 20.0%
!!! TTTACATTTTGCCTTTTTTT+TGG + chr6_3:16950200-16950219 Msa0942310:intron 20.0%
!!! GTTTTTCAACAATTTTTTAC+AGG + chr6_3:16950377-16950396 Msa0942310:intron 20.0%
!!! AAAAGGGTTAAATATGTTTT+TGG - chr6_3:16950744-16950763 None:intergenic 20.0%
!! ATCAATATCAAAAATCACAA+TGG + chr6_3:16950786-16950805 Msa0942310:CDS 20.0%
!! TCAATATCAAAAATCACAAT+GGG + chr6_3:16950787-16950806 Msa0942310:CDS 20.0%
!! AAAAATATCTCACTTAAAGA+TGG - chr6_3:16950893-16950912 None:intergenic 20.0%
!!! TTTTTCTTAATAGAAGATGA+TGG - chr6_3:16950920-16950939 None:intergenic 20.0%
!! CTTCTATTAAGAAAAAATTG+AGG + chr6_3:16950924-16950943 Msa0942310:intron 20.0%
!! TGTCATTGAAAAACAATATT+TGG + chr6_3:16951335-16951354 Msa0942310:intron 20.0%
!! TTCAATATGATGTAAAATAC+AGG + chr6_3:16951550-16951569 Msa0942310:intron 20.0%
!!! TATTCTAATGCAAATTTTGT+AGG - chr6_3:16951923-16951942 None:intergenic 20.0%
! AATTTATCTTGAACTACTCA+AGG + chr6_3:16944359-16944378 Msa0942310:CDS 25.0%
! TCAAAAATATGGATTTGATC+AGG + chr6_3:16944580-16944599 Msa0942310:CDS 25.0%
! CTAATTGAACTATGTTCATA+TGG - chr6_3:16944712-16944731 None:intergenic 25.0%
! TAATACATTGTTATATGCAG+AGG + chr6_3:16944738-16944757 Msa0942310:intron 25.0%
!!! TTTTTTGTCATGTAGTTTAG+TGG - chr6_3:16944818-16944837 None:intergenic 25.0%
! ATATTTAAGTAATCTTTGGG+AGG - chr6_3:16944909-16944928 None:intergenic 25.0%
! TCCCAAAGATTACTTAAATA+TGG + chr6_3:16944908-16944927 Msa0942310:intron 25.0%
! GTCCATATTTAAGTAATCTT+TGG - chr6_3:16944913-16944932 None:intergenic 25.0%
! GTTTATGAAAAATAGAAGCA+TGG + chr6_3:16945030-16945049 Msa0942310:intron 25.0%
!!! AGCGGTAATTGATTTAATTT+TGG - chr6_3:16945083-16945102 None:intergenic 25.0%
! AAAAAGAAAAGGATAAGTAC+AGG + chr6_3:16945121-16945140 Msa0942310:intron 25.0%
! GTAGGGAAAAAAAATATTCT+TGG - chr6_3:16945259-16945278 None:intergenic 25.0%
!!! GTATTTTAAGAACACAAGTT+AGG - chr6_3:16945364-16945383 None:intergenic 25.0%
!!! ATTCATTAACTTGTGTCTTA+AGG + chr6_3:16945496-16945515 Msa0942310:intron 25.0%
! GTAAGTTTGCATAAAAAAAG+TGG - chr6_3:16945640-16945659 None:intergenic 25.0%
! TCCACTGTCTAATTTAAATA+GGG + chr6_3:16945915-16945934 Msa0942310:intron 25.0%
!!! TAGGGGTATTTTAAGTATAT+TGG + chr6_3:16945933-16945952 Msa0942310:intron 25.0%
!!! GGTATTTTAAGTATATTGGT+TGG + chr6_3:16945937-16945956 Msa0942310:intron 25.0%
! TTAAGAAACCAAAATATCAC+TGG - chr6_3:16945987-16946006 None:intergenic 25.0%
! AATAAGAAGTGAGAAAAACA+AGG - chr6_3:16946062-16946081 None:intergenic 25.0%
!!! TTGTTTTTCTCACTTCTTAT+TGG + chr6_3:16946061-16946080 Msa0942310:intron 25.0%
! TTCTTATTGGTCAAAAACAA+TGG + chr6_3:16946074-16946093 Msa0942310:intron 25.0%
! AAAACAATGGAAAGAGAAAA+AGG + chr6_3:16946087-16946106 Msa0942310:intron 25.0%
!!! AACCATTTTTTGACAACTTT+TGG - chr6_3:16946159-16946178 None:intergenic 25.0%
! TTCACATCAATATCAATTGT+TGG + chr6_3:16946314-16946333 Msa0942310:intron 25.0%
!! TATGTTGATGAGATTCTAAA+TGG - chr6_3:16946489-16946508 None:intergenic 25.0%
! AAAAAATCTAATGGTTGAGA+TGG + chr6_3:16946686-16946705 Msa0942310:intron 25.0%
! AAAACCAAAAAGTTACCTAT+AGG - chr6_3:16946723-16946742 None:intergenic 25.0%
! AATCAAATGGTTCAAATTTG+GGG - chr6_3:16946796-16946815 None:intergenic 25.0%
! TGGTATGAGTTAAAATTGTT+AGG - chr6_3:16947137-16947156 None:intergenic 25.0%
!! GATTTTCTGTATTTGCTTAA+TGG - chr6_3:16947157-16947176 None:intergenic 25.0%
! TAACTGAAAATACTTATCAG+CGG - chr6_3:16947348-16947367 None:intergenic 25.0%
! TGTTTCTTTAGACAAACAAA+AGG - chr6_3:16947703-16947722 None:intergenic 25.0%
!!! AACAGATTTGATTTTCCTTT+TGG + chr6_3:16948400-16948419 Msa0942310:intron 25.0%
!! AACACAGAAATTTAAAGCTT+TGG + chr6_3:16948483-16948502 Msa0942310:intron 25.0%
!!! TGATAATATTGATTTTGCCT+TGG + chr6_3:16948994-16949013 Msa0942310:intron 25.0%
!! TTTTTGCTTATAATAGTGAC+CGG - chr6_3:16949650-16949669 None:intergenic 25.0%
! CATCTCATAAATGATGTATT+TGG - chr6_3:16949615-16949634 None:intergenic 25.0%
!! TTTTTGCTTATAATAGTGAC+CGG + chr6_3:16949650-16949669 Msa0942310:intron 25.0%
!!! CCTGTGTTTGTTTTATTATT+GGG - chr6_3:16949775-16949794 None:intergenic 25.0%
!!! TCCTGTGTTTGTTTTATTAT+TGG - chr6_3:16949776-16949795 None:intergenic 25.0%
! AATAATAAAACAAACACAGG+AGG + chr6_3:16949775-16949794 Msa0942310:intron 25.0%
! TTCAAGAATAAATATGCCAA+AGG - chr6_3:16949901-16949920 None:intergenic 25.0%
! AAAAGATGCGAAATAATTAG+AGG + chr6_3:16949920-16949939 Msa0942310:intron 25.0%
!! TGATATCGCATTTTATATAC+AGG + chr6_3:16949985-16950004 Msa0942310:intron 25.0%
!! GATATCGCATTTTATATACA+GGG + chr6_3:16949986-16950005 Msa0942310:intron 25.0%
!! ATATCGCATTTTATATACAG+GGG + chr6_3:16949987-16950006 Msa0942310:intron 25.0%
! AAAGGCAAAATGTAAAATCA+TGG - chr6_3:16950196-16950215 None:intergenic 25.0%
!!! GAGTGCATAAATTTTTTGTA+GGG - chr6_3:16950304-16950323 None:intergenic 25.0%
!!! TGAGTGCATAAATTTTTTGT+AGG - chr6_3:16950305-16950324 None:intergenic 25.0%
! AAACAAATTTGGATTGAGTA+AGG - chr6_3:16950336-16950355 None:intergenic 25.0%
! GTGTTAAGAACGTTATTAAA+AGG + chr6_3:16950401-16950420 Msa0942310:intron 25.0%
!! TTAGAAGATCGCAATTTTAT+AGG + chr6_3:16950716-16950735 Msa0942310:intron 25.0%
! CTATTAAGAAAAAATTGAGG+AGG + chr6_3:16950927-16950946 Msa0942310:intron 25.0%
!!! GTTTTTGAAAACATTGCTTT+AGG - chr6_3:16951046-16951065 None:intergenic 25.0%
!! GTTTTCAAAAACTAACTAGA+TGG + chr6_3:16951054-16951073 Msa0942310:intron 25.0%
! AACTATCAAATATATTCCAC+AGG + chr6_3:16951426-16951445 Msa0942310:CDS 25.0%
! ATTGAATATGCCTTAAAGTT+TGG - chr6_3:16951495-16951514 None:intergenic 25.0%
! ATGTTACTGTAATGTGAATT+TGG - chr6_3:16951705-16951724 None:intergenic 25.0%
! CAAAATTGAAGTGAATGAAA+AGG - chr6_3:16951860-16951879 None:intergenic 25.0%
! AAGAAGCAGAAACATAAAAA+AGG - chr6_3:16951898-16951917 None:intergenic 25.0%
! TGAAAAATCGATTGCAAAAT+CGG + chr6_3:16952010-16952029 Msa0942310:intron 25.0%
! ATACACGAGTAAGAAAATTA+AGG - chr6_3:16952069-16952088 None:intergenic 25.0%
!!! ATTGATGATGTTTTCTTTGA+TGG - chr6_3:16952170-16952189 None:intergenic 25.0%
!! ATAATTCTCTTCTTGTTGTA+AGG - chr6_3:16952574-16952593 None:intergenic 25.0%
! ACAAGAAGAGAATTATACTT+TGG + chr6_3:16952578-16952597 Msa0942310:three_prime_UTR 25.0%
AATAATTCCCTCATAGAAGT+TGG + chr6_3:16944205-16944224 Msa0942310:five_prime_UTR 30.0%
ATATCTTCCAACTTCTATGA+GGG - chr6_3:16944215-16944234 None:intergenic 30.0%
AATATCTTCCAACTTCTATG+AGG - chr6_3:16944216-16944235 None:intergenic 30.0%
GAGTAGTTCAAGATAAATTG+AGG - chr6_3:16944358-16944377 None:intergenic 30.0%
! GAAAGTTTGAAATTGTAGTG+TGG + chr6_3:16944451-16944470 Msa0942310:intron 30.0%
GATATTGAAACCGAACATTA+GGG - chr6_3:16944559-16944578 None:intergenic 30.0%
TGATATTGAAACCGAACATT+AGG - chr6_3:16944560-16944579 None:intergenic 30.0%
ATTCTTGGAGTTAAAAGAGT+GGG - chr6_3:16945244-16945263 None:intergenic 30.0%
TATTCTTGGAGTTAAAAGAG+TGG - chr6_3:16945245-16945264 None:intergenic 30.0%
CCAAGAAGATTCTTTATGTA+GGG - chr6_3:16945276-16945295 None:intergenic 30.0%
AACCAATGTCCTTAAGATAT+CGG - chr6_3:16945548-16945567 None:intergenic 30.0%
CTCCACTGTCTAATTTAAAT+AGG + chr6_3:16945914-16945933 Msa0942310:intron 30.0%
CCACTGTCTAATTTAAATAG+GGG + chr6_3:16945916-16945935 Msa0942310:intron 30.0%
! TAAGCAAACCAGTGATATTT+TGG + chr6_3:16945976-16945995 Msa0942310:intron 30.0%
TCAACAAAGTTGTCACTAAA+TGG - chr6_3:16946036-16946055 None:intergenic 30.0%
GTCCAAAAGTTGTCAAAAAA+TGG + chr6_3:16946154-16946173 Msa0942310:intron 30.0%
AACTTGGAACAATAAGACTA+AGG - chr6_3:16946275-16946294 None:intergenic 30.0%
ATACCTCATAAATTGCAACT+TGG - chr6_3:16946291-16946310 None:intergenic 30.0%
!!! ATGTCATAGGTCTTTTTCAA+CGG - chr6_3:16946398-16946417 None:intergenic 30.0%
TTGATGAGATTCTAAATGGA+TGG - chr6_3:16946485-16946504 None:intergenic 30.0%
! ATTTGGTAATAGTAATTGGG+TGG + chr6_3:16946591-16946610 Msa0942310:intron 30.0%
TGAACCATTTGATTAATCCA+AGG + chr6_3:16946802-16946821 Msa0942310:intron 30.0%
GAACCATTTGATTAATCCAA+GGG + chr6_3:16946803-16946822 Msa0942310:intron 30.0%
!! TTGTAGATTTGATTTGCTTG+TGG - chr6_3:16947104-16947123 None:intergenic 30.0%
AGTTAAAATTGTTAGGCATG+TGG - chr6_3:16947130-16947149 None:intergenic 30.0%
AACTCCAAATCTCCAAAAAT+CGG - chr6_3:16947586-16947605 None:intergenic 30.0%
! TCTTTTAAATCTACCACTGT+TGG + chr6_3:16947619-16947638 Msa0942310:intron 30.0%
TTTAGACAAACAAAAGGATG+GGG - chr6_3:16947697-16947716 None:intergenic 30.0%
CTTTAGACAAACAAAAGGAT+GGG - chr6_3:16947698-16947717 None:intergenic 30.0%
TCTTTAGACAAACAAAAGGA+TGG - chr6_3:16947699-16947718 None:intergenic 30.0%
!! AAAGCTCGTTTTATTGTTAG+AGG + chr6_3:16947771-16947790 Msa0942310:intron 30.0%
ACCAAGGTTCATCAATAATA+GGG - chr6_3:16947833-16947852 None:intergenic 30.0%
AACCAAGGTTCATCAATAAT+AGG - chr6_3:16947834-16947853 None:intergenic 30.0%
ATTATTGATGAACCTTGGTT+AGG + chr6_3:16947834-16947853 Msa0942310:intron 30.0%
AATCAAGGGAGTTTGTAAAA+TGG - chr6_3:16948000-16948019 None:intergenic 30.0%
ATCACAAACTACACAATTCA+GGG - chr6_3:16948264-16948283 None:intergenic 30.0%
ACATGATGTAAATCTTCAGA+AGG - chr6_3:16948290-16948309 None:intergenic 30.0%
TGCACAATTAGAATTAGTAC+AGG - chr6_3:16948381-16948400 None:intergenic 30.0%
! GTTCTGAATGTTACATGTTT+AGG + chr6_3:16948839-16948858 Msa0942310:intron 30.0%
ATAATGTGTTCAATACAACG+AGG - chr6_3:16949226-16949245 None:intergenic 30.0%
AATACAGAAAACAAGACATC+CGG + chr6_3:16949468-16949487 Msa0942310:intron 30.0%
CCCAATAATAAAACAAACAC+AGG + chr6_3:16949772-16949791 Msa0942310:intron 30.0%
! GTATGTGTTATGGTGTTAAA+TGG - chr6_3:16949815-16949834 None:intergenic 30.0%
ACAATTTAATTGTGGAGAAG+TGG - chr6_3:16950036-16950055 None:intergenic 30.0%
AAGCTCACACAATTTAATTG+TGG - chr6_3:16950064-16950083 None:intergenic 30.0%
AAAAGGATGTTATAGAGTGA+TGG + chr6_3:16950119-16950138 Msa0942310:intron 30.0%
TGGTGTAATTAGAATGCTTA+AGG - chr6_3:16950149-16950168 None:intergenic 30.0%
AGCTCTTCTACATATAATGT+TGG - chr6_3:16950169-16950188 None:intergenic 30.0%
AAGTAAGGACTAAACTTACA+AGG - chr6_3:16950260-16950279 None:intergenic 30.0%
!!! TTTTGCGATATTTTTTTCGG+AGG - chr6_3:16950428-16950447 None:intergenic 30.0%
! CAAGTTTAGAACACTATGAA+AGG - chr6_3:16950563-16950582 None:intergenic 30.0%
CTTACATAACTTGATCGAAT+CGG + chr6_3:16951103-16951122 Msa0942310:intron 30.0%
!! AAATATTGGCTCTATGATGA+AGG + chr6_3:16951307-16951326 Msa0942310:intron 30.0%
AAGAAAGAAATTCTAACCTG+TGG - chr6_3:16951445-16951464 None:intergenic 30.0%
TGAGTGAAAACCAAACTTTA+AGG + chr6_3:16951482-16951501 Msa0942310:intron 30.0%
CATTGATGCATAAAGTCATT+TGG - chr6_3:16951729-16951748 None:intergenic 30.0%
!! CTTTTTCATTCTAGACTCTT+GGG + chr6_3:16951774-16951793 Msa0942310:intron 30.0%
! GAGATAACAATACTTTTCCA+AGG - chr6_3:16951816-16951835 None:intergenic 30.0%
!! TGGAAAAGTATTGTTATCTC+TGG + chr6_3:16951816-16951835 Msa0942310:CDS 30.0%
GAAGTGAATGAAAAGGTAAA+GGG - chr6_3:16951853-16951872 None:intergenic 30.0%
TGAAGTGAATGAAAAGGTAA+AGG - chr6_3:16951854-16951873 None:intergenic 30.0%
GATTTGTGAAAGTGATTGTT+TGG + chr6_3:16952473-16952492 Msa0942310:three_prime_UTR 30.0%
GTTGTAAGGTCTTAAAGATT+TGG - chr6_3:16952560-16952579 None:intergenic 30.0%
AAATATGTGTGCAGATTGTA+TGG + chr6_3:16952620-16952639 Msa0942310:three_prime_UTR 30.0%
AAAATAGCATACACCGTGTT+TGG + chr6_3:16944295-16944314 Msa0942310:CDS 35.0%
AAAAGCAATCCATCCAAACA+CGG - chr6_3:16944311-16944330 None:intergenic 35.0%
TCTTGAACTACTCAAGGAAA+AGG + chr6_3:16944365-16944384 Msa0942310:CDS 35.0%
! AGTTTGAAATTGTAGTGTGG+TGG + chr6_3:16944454-16944473 Msa0942310:intron 35.0%
! GTTTGAAATTGTAGTGTGGT+GGG + chr6_3:16944455-16944474 Msa0942310:intron 35.0%
AACATTAGGGCTAAAGTACA+AGG - chr6_3:16944546-16944565 None:intergenic 35.0%
TGTACTTTAGCCCTAATGTT+CGG + chr6_3:16944546-16944565 Msa0942310:CDS 35.0%
GGAAAAGGAAAGAAAAGAGA+GGG - chr6_3:16944644-16944663 None:intergenic 35.0%
AGGAAAAGGAAAGAAAAGAG+AGG - chr6_3:16944645-16944664 None:intergenic 35.0%
ATGTTCATATGGACATGTAC+TGG - chr6_3:16944701-16944720 None:intergenic 35.0%
AAATATGGACTTAGCCTCTA+AGG + chr6_3:16944923-16944942 Msa0942310:intron 35.0%
AGTTACAAACTTCTCCTTAG+AGG - chr6_3:16944940-16944959 None:intergenic 35.0%
CCCTACATAAAGAATCTTCT+TGG + chr6_3:16945273-16945292 Msa0942310:intron 35.0%
GCCAAGAAGATTCTTTATGT+AGG - chr6_3:16945277-16945296 None:intergenic 35.0%
TCTTGCTAACCGATATCTTA+AGG + chr6_3:16945536-16945555 Msa0942310:intron 35.0%
AACCGATATCTTAAGGACAT+TGG + chr6_3:16945543-16945562 Msa0942310:intron 35.0%
! AATGATAATGAGCGTCATTG+AGG - chr6_3:16945686-16945705 None:intergenic 35.0%
TCAAGTCGAGTATGACATAA+TGG + chr6_3:16945730-16945749 Msa0942310:intron 35.0%
CCCCTATTTAAATTAGACAG+TGG - chr6_3:16945919-16945938 None:intergenic 35.0%
AAAGAGAAAAAGGAAGAGAG+AGG + chr6_3:16946097-16946116 Msa0942310:intron 35.0%
GTTCCAAGTTGCAATTTATG+AGG + chr6_3:16946285-16946304 Msa0942310:CDS 35.0%
TTAAAAGATCACCTTTCCCA+TGG - chr6_3:16946649-16946668 None:intergenic 35.0%
AAAAGTTACCTATAGGTTGC+TGG - chr6_3:16946716-16946735 None:intergenic 35.0%
! GCAACCTATAGGTAACTTTT+TGG + chr6_3:16946716-16946735 Msa0942310:intron 35.0%
TAGAGAAGAAGACAATTGGT+GGG - chr6_3:16946768-16946787 None:intergenic 35.0%
ATAGAGAAGAAGACAATTGG+TGG - chr6_3:16946769-16946788 None:intergenic 35.0%
AGGATAGAGAAGAAGACAAT+TGG - chr6_3:16946772-16946791 None:intergenic 35.0%
AAATGGTTCAAATTTGGGGA+AGG - chr6_3:16946792-16946811 None:intergenic 35.0%
CAACCCTTGGATTAATCAAA+TGG - chr6_3:16946809-16946828 None:intergenic 35.0%
AAACAGTCGTTGCTCATTAA+AGG + chr6_3:16946921-16946940 Msa0942310:intron 35.0%
!!! GTAAAATGCTGAGTTTTGAG+AGG - chr6_3:16947025-16947044 None:intergenic 35.0%
CAGTTACAATTGACAGAACA+TGG - chr6_3:16947204-16947223 None:intergenic 35.0%
CATGTTCTGTCAATTGTAAC+TGG + chr6_3:16947202-16947221 Msa0942310:intron 35.0%
TTAAAGGTTGTCTCTGTTGT+TGG + chr6_3:16947530-16947549 Msa0942310:intron 35.0%
!! TTGTCCGATTTTTGGAGATT+TGG + chr6_3:16947579-16947598 Msa0942310:intron 35.0%
AGAAGGAGACAAATACTTGA+AGG + chr6_3:16947664-16947683 Msa0942310:intron 35.0%
TTATTGTTAGAGGAGGATCT+CGG + chr6_3:16947781-16947800 Msa0942310:intron 35.0%
AGGTTCATCAATAATAGGGA+TGG - chr6_3:16947829-16947848 None:intergenic 35.0%
TCCCTATTATTGATGAACCT+TGG + chr6_3:16947829-16947848 Msa0942310:intron 35.0%
CTTCCAAATCAATGCATCAT+CGG - chr6_3:16948033-16948052 None:intergenic 35.0%
!! CATTGATTTGGAAGGTTGAA+AGG + chr6_3:16948039-16948058 Msa0942310:intron 35.0%
ATTTGGAAGGTTGAAAGGAA+CGG + chr6_3:16948044-16948063 Msa0942310:intron 35.0%
! AAGTCTGTAGGCACTTTTAA+CGG - chr6_3:16948078-16948097 None:intergenic 35.0%
! TTAATTTGGCGTATGTGTAG+AGG + chr6_3:16948191-16948210 Msa0942310:intron 35.0%
TTTATCCTGTAAACGAACAC+GGG - chr6_3:16948228-16948247 None:intergenic 35.0%
CTTTATCCTGTAAACGAACA+CGG - chr6_3:16948229-16948248 None:intergenic 35.0%
TCACAAACTACACAATTCAG+GGG - chr6_3:16948263-16948282 None:intergenic 35.0%
CATCACAAACTACACAATTC+AGG - chr6_3:16948265-16948284 None:intergenic 35.0%
! CTGAATTGTGTAGTTTGTGA+TGG + chr6_3:16948263-16948282 Msa0942310:intron 35.0%
TTTCTTTGACTGTTCCTTTG+CGG + chr6_3:16948310-16948329 Msa0942310:intron 35.0%
!! TTTGATTTTCCTTTTGGTGC+AGG + chr6_3:16948406-16948425 Msa0942310:intron 35.0%
TTTCCACAAACTCCACAAAA+GGG - chr6_3:16948465-16948484 None:intergenic 35.0%
GTTAAACTCAACCTTTGAGT+TGG - chr6_3:16949122-16949141 None:intergenic 35.0%
ACTCAAAGGTTGAGTTTAAC+CGG + chr6_3:16949122-16949141 Msa0942310:intron 35.0%
ACAACGAGGTACATAAGAAT+AGG - chr6_3:16949212-16949231 None:intergenic 35.0%
GTGAAAAATCAACTTTCCCA+TGG + chr6_3:16949306-16949325 Msa0942310:intron 35.0%
AAAAATCAACTTTCCCATGG+TGG + chr6_3:16949309-16949328 Msa0942310:intron 35.0%
AAAATCAACTTTCCCATGGT+GGG + chr6_3:16949310-16949329 Msa0942310:intron 35.0%
! CATATGGATTGAAGAGATTC+CGG - chr6_3:16949490-16949509 None:intergenic 35.0%
CAAATGCTTCGTATGTGTTA+TGG - chr6_3:16949825-16949844 None:intergenic 35.0%
TGGAGCACACAATTTAATTG+TGG - chr6_3:16950044-16950063 None:intergenic 35.0%
! TACAAGGTCGCAATTTTGTA+GGG - chr6_3:16950244-16950263 None:intergenic 35.0%
! TTACAAGGTCGCAATTTTGT+AGG - chr6_3:16950245-16950264 None:intergenic 35.0%
AATTAGCCAAAGCCAAGATT+TGG - chr6_3:16950869-16950888 None:intergenic 35.0%
AGTTCAACCACACTTGAATT+GGG - chr6_3:16951235-16951254 None:intergenic 35.0%
TAGTTCAACCACACTTGAAT+TGG - chr6_3:16951236-16951255 None:intergenic 35.0%
! AGTCTCATCTGTTCGATTTT+CGG + chr6_3:16951274-16951293 Msa0942310:intron 35.0%
! TAGAGCCAATATTTTCACAC+CGG - chr6_3:16951301-16951320 None:intergenic 35.0%
AATGTGTTCCTTGATTTCTG+TGG + chr6_3:16951620-16951639 Msa0942310:CDS 35.0%
! CCAAGAGTCTAGAATGAAAA+AGG - chr6_3:16951776-16951795 None:intergenic 35.0%
!! CCTTTTTCATTCTAGACTCT+TGG + chr6_3:16951773-16951792 Msa0942310:intron 35.0%
!! TTGCAATCGATTTTTCAACC+TGG - chr6_3:16952007-16952026 None:intergenic 35.0%
ATGTTGTCATCGAGTTTAGA+AGG - chr6_3:16952197-16952216 None:intergenic 35.0%
ATTTGAAGGAGACTTGATGA+GGG - chr6_3:16952228-16952247 None:intergenic 35.0%
! ATTCAAACATTTTCAGCCAC+CGG - chr6_3:16952254-16952273 None:intergenic 35.0%
CACACTAGCTAAAATCATAC+AGG - chr6_3:16952325-16952344 None:intergenic 35.0%
! GTGTAGATTTTCCCATGATA+AGG + chr6_3:16952342-16952361 Msa0942310:three_prime_UTR 35.0%
! AGATTTTCCCATGATAAGGT+TGG + chr6_3:16952346-16952365 Msa0942310:three_prime_UTR 35.0%
! TTTTCCCATTATGAGGTTAG+TGG + chr6_3:16952375-16952394 Msa0942310:three_prime_UTR 35.0%
TTTCCCATTATGAGGTTAGT+GGG + chr6_3:16952376-16952395 Msa0942310:three_prime_UTR 35.0%
ATCGACATTTGTCATAATCG+AGG + chr6_3:16952438-16952457 Msa0942310:three_prime_UTR 35.0%
TTGGAAGCTGTGAATATCAT+TGG + chr6_3:16952492-16952511 Msa0942310:three_prime_UTR 35.0%
GGTCTTAAAGATTTGGAGAA+TGG - chr6_3:16952553-16952572 None:intergenic 35.0%
ATAAGATGGAGGAGACATCA+TGG + chr6_3:16944257-16944276 Msa0942310:exon 40.0%
!!! GTTTGGATGGATTGCTTTTG+TGG + chr6_3:16944312-16944331 Msa0942310:CDS 40.0%
!!! GATGGATTGCTTTTGTGGTT+TGG + chr6_3:16944317-16944336 Msa0942310:CDS 40.0%
!! AGTACAAGGAAGCATTGTAG+AGG - chr6_3:16944532-16944551 None:intergenic 40.0%
ATGGACATGTACTGGAAACA+TGG - chr6_3:16944693-16944712 None:intergenic 40.0%
! GATGTTTAAAGTTCGAGCTC+TGG - chr6_3:16944764-16944783 None:intergenic 40.0%
! CGTCATTGAGGCATTAGTTA+AGG - chr6_3:16945674-16945693 None:intergenic 40.0%
CAAAACAGCATGTGTTGAGA+AGG - chr6_3:16946248-16946267 None:intergenic 40.0%
AATGGATGGACGAAAAAGTG+TGG - chr6_3:16946471-16946490 None:intergenic 40.0%
TTTGTATACATCCACACACG+AGG + chr6_3:16946543-16946562 Msa0942310:intron 40.0%
TAATTGGGTGGCATTTACCA+TGG + chr6_3:16946603-16946622 Msa0942310:intron 40.0%
AATTGGGTGGCATTTACCAT+GGG + chr6_3:16946604-16946623 Msa0942310:intron 40.0%
GAAAAGATTCACTCTTCCCA+TGG - chr6_3:16946623-16946642 None:intergenic 40.0%
! AGTGAATCTTTTCCCACCAT+GGG + chr6_3:16946630-16946649 Msa0942310:intron 40.0%
! ATGGATTACCAGCAACCTAT+AGG + chr6_3:16946705-16946724 Msa0942310:intron 40.0%
! TTGGTGGGGTCACAATTTTT+GGG - chr6_3:16946753-16946772 None:intergenic 40.0%
! ATTGGTGGGGTCACAATTTT+TGG - chr6_3:16946754-16946773 None:intergenic 40.0%
AGAGAAGAAGACAATTGGTG+GGG - chr6_3:16946767-16946786 None:intergenic 40.0%
!! AGAGGCGATTAAAAGTGTTG+TGG - chr6_3:16947007-16947026 None:intergenic 40.0%
!! GATTTGCTTGTGGCTTTAGA+TGG - chr6_3:16947094-16947113 None:intergenic 40.0%
GTGTTTAGTGTTGTGTGTGA+TGG - chr6_3:16947326-16947345 None:intergenic 40.0%
! AAGGGGAACATGTCACTTAA+AGG + chr6_3:16947514-16947533 Msa0942310:intron 40.0%
!!! GAGTCTTGTTGTCCGATTTT+TGG + chr6_3:16947571-16947590 Msa0942310:intron 40.0%
TTGGATTGATCGAATGGCTA+AGG + chr6_3:16947638-16947657 Msa0942310:intron 40.0%
TCGAATGGCTAAGGTTTAGA+AGG + chr6_3:16947647-16947666 Msa0942310:intron 40.0%
GAGACAAATACTTGAAGGAG+AGG + chr6_3:16947669-16947688 Msa0942310:intron 40.0%
TTGTTTGTCCAAGTTACGCA+TGG + chr6_3:16947736-16947755 Msa0942310:intron 40.0%
!! GCTCGTTTTATTGTTAGAGG+AGG + chr6_3:16947774-16947793 Msa0942310:intron 40.0%
TTTGTTCCATTGCCTAACCA+AGG - chr6_3:16947849-16947868 None:intergenic 40.0%
GTTAGGCAATGGAACAAAAC+TGG + chr6_3:16947851-16947870 Msa0942310:intron 40.0%
!! TGACCGATGATGCATTGATT+TGG + chr6_3:16948027-16948046 Msa0942310:intron 40.0%
!! CGATGATGCATTGATTTGGA+AGG + chr6_3:16948031-16948050 Msa0942310:intron 40.0%
TGATTGACACTGTTCATCTG+CGG + chr6_3:16948111-16948130 Msa0942310:intron 40.0%
CGTGTTCGTTTACAGGATAA+AGG + chr6_3:16948227-16948246 Msa0942310:intron 40.0%
GTTTCCACAAACTCCACAAA+AGG - chr6_3:16948466-16948485 None:intergenic 40.0%
! AAAGCTTTGGCAAGACGTTT+CGG + chr6_3:16948496-16948515 Msa0942310:intron 40.0%
AGCAGCAGTAACACATTTGA+GGG + chr6_3:16948602-16948621 Msa0942310:intron 40.0%
CACTTGAATCTACCTTGATG+CGG - chr6_3:16948794-16948813 None:intergenic 40.0%
ATGTGTATCCGTGATGAAGA+GGG + chr6_3:16948863-16948882 Msa0942310:intron 40.0%
CAAAAACTCCCTCTTCATCA+CGG - chr6_3:16948874-16948893 None:intergenic 40.0%
TATGGGCCTTTATTATGCTC+TGG + chr6_3:16948949-16948968 Msa0942310:intron 40.0%
!!! CACTGTAGTTTTAGAGTCCA+AGG - chr6_3:16949014-16949033 None:intergenic 40.0%
!! CTTGGACTCTAAAACTACAG+TGG + chr6_3:16949012-16949031 Msa0942310:intron 40.0%
! TGCTTTTAATAAGTCTCGCC+CGG + chr6_3:16949036-16949055 Msa0942310:intron 40.0%
GTCGAAAAGACTTCTACAAG+CGG - chr6_3:16949089-16949108 None:intergenic 40.0%
CTTGCATTTCACCAACTCAA+AGG + chr6_3:16949108-16949127 Msa0942310:intron 40.0%
GGTACATAAGAATAGGTGGT+GGG - chr6_3:16949205-16949224 None:intergenic 40.0%
AGGTACATAAGAATAGGTGG+TGG - chr6_3:16949206-16949225 None:intergenic 40.0%
ACGAGGTACATAAGAATAGG+TGG - chr6_3:16949209-16949228 None:intergenic 40.0%
CTTGTTTGACTGCTAAGTGT+AGG + chr6_3:16949284-16949303 Msa0942310:intron 40.0%
GAGGGAAAAAAAAGATGCGA+TGG - chr6_3:16949384-16949403 None:intergenic 40.0%
TGATATTTGACGTCGGAAGA+GGG - chr6_3:16949402-16949421 None:intergenic 40.0%
TTGATATTTGACGTCGGAAG+AGG - chr6_3:16949403-16949422 None:intergenic 40.0%
TTGCTTATAATAGTGACCGG+AGG + chr6_3:16949653-16949672 Msa0942310:intron 40.0%
TGCTTATAATAGTGACCGGA+GGG + chr6_3:16949654-16949673 Msa0942310:intron 40.0%
AACTAAATATTCCCTCCCTC+CGG - chr6_3:16949672-16949691 None:intergenic 40.0%
!! TTTTTGGTCAAGTAGCCTAG+TGG - chr6_3:16950090-16950109 None:intergenic 40.0%
CCACGCTGCACAAAAAAAAA+GGG - chr6_3:16950760-16950779 None:intergenic 40.0%
!!! CCTTTTTTTTTGTGCAGCGT+GGG + chr6_3:16950758-16950777 Msa0942310:intron 40.0%
TTTGGAAGGGAATGCTATGA+AGG - chr6_3:16950851-16950870 None:intergenic 40.0%
TAGCATTCCCTTCCAAATCT+TGG + chr6_3:16950854-16950873 Msa0942310:CDS 40.0%
ATAGTCACCCAATTCAAGTG+TGG + chr6_3:16951225-16951244 Msa0942310:intron 40.0%
!! CAGATGAGACTTTGAGATCA+TGG - chr6_3:16951265-16951284 None:intergenic 40.0%
! TTCATGATCAAGAGCACAGA+TGG + chr6_3:16951584-16951603 Msa0942310:CDS 40.0%
! AGCACAGATGGATTTAGCAT+TGG + chr6_3:16951596-16951615 Msa0942310:CDS 40.0%
AATGGCAAACTATGCTCAGA+TGG + chr6_3:16951646-16951665 Msa0942310:CDS 40.0%
ACTCTTGGGTGAATTTCTCT+GGG + chr6_3:16951788-16951807 Msa0942310:CDS 40.0%
TAGACATCGATGTAGTTACC+AGG + chr6_3:16951986-16952005 Msa0942310:intron 40.0%
TTTGAAGGAGACTTGATGAG+GGG - chr6_3:16952227-16952246 None:intergenic 40.0%
CATTTGAAGGAGACTTGATG+AGG - chr6_3:16952229-16952248 None:intergenic 40.0%
! TTTTCCCATGATAAGGTTGG+TGG + chr6_3:16952349-16952368 Msa0942310:three_prime_UTR 40.0%
! TTTCCCATGATAAGGTTGGT+GGG + chr6_3:16952350-16952369 Msa0942310:three_prime_UTR 40.0%
TTCCCATTATGAGGTTAGTG+GGG + chr6_3:16952377-16952396 Msa0942310:three_prime_UTR 40.0%
ATCCCCACTAACCTCATAAT+GGG - chr6_3:16952382-16952401 None:intergenic 40.0%
AACTGCGTGCTATACAGATA+GGG + chr6_3:16952415-16952434 Msa0942310:three_prime_UTR 40.0%
GCAGATTGTATGGCTAAAGA+AGG + chr6_3:16952630-16952649 Msa0942310:three_prime_UTR 40.0%
TAGCATACACCGTGTTTGGA+TGG + chr6_3:16944299-16944318 Msa0942310:CDS 45.0%
! GAGGAGGTACAAGGTATGTT+TGG - chr6_3:16944513-16944532 None:intergenic 45.0%
! AGCATTGTAGAGGAGGTACA+AGG - chr6_3:16944522-16944541 None:intergenic 45.0%
!! ACAAGGAAGCATTGTAGAGG+AGG - chr6_3:16944529-16944548 None:intergenic 45.0%
! GAGTGAATCTTTTCCCACCA+TGG + chr6_3:16946629-16946648 Msa0942310:intron 45.0%
! ATCTTTTCCCACCATGGGAA+AGG + chr6_3:16946635-16946654 Msa0942310:intron 45.0%
AAGATCACCTTTCCCATGGT+GGG - chr6_3:16946645-16946664 None:intergenic 45.0%
AAAGATCACCTTTCCCATGG+TGG - chr6_3:16946646-16946665 None:intergenic 45.0%
!! GGCGATTAAAAGTGTTGTGG+AGG - chr6_3:16947004-16947023 None:intergenic 45.0%
TCTCTGTTGTTGGCATCATC+AGG + chr6_3:16947540-16947559 Msa0942310:intron 45.0%
!! TTGGCATCATCAGGTTGAAG+AGG + chr6_3:16947549-16947568 Msa0942310:intron 45.0%
CCATTCGATCAATCCAACAG+TGG - chr6_3:16947635-16947654 None:intergenic 45.0%
CCACTGTTGGATTGATCGAA+TGG + chr6_3:16947632-16947651 Msa0942310:intron 45.0%
ATACTTCGCCATGCGTAACT+TGG - chr6_3:16947747-16947766 None:intergenic 45.0%
GATGAACCTTGGTTAGGCAA+TGG + chr6_3:16947840-16947859 Msa0942310:intron 45.0%
! TTGCCAATGCGCATTTGTTG+CGG + chr6_3:16947883-16947902 Msa0942310:intron 45.0%
! TTTGTTGCGGAACTTTGGAG+TGG + chr6_3:16947896-16947915 Msa0942310:intron 45.0%
!! TTCACACCCACTCTAAGATG+TGG + chr6_3:16947928-16947947 Msa0942310:intron 45.0%
CACGTTCCACATCTTAGAGT+GGG - chr6_3:16947937-16947956 None:intergenic 45.0%
CCAAGTATTCGATGATGCCT+CGG + chr6_3:16947968-16947987 Msa0942310:intron 45.0%
TCGGTCACTTGCTCAATCAA+GGG - chr6_3:16948014-16948033 None:intergenic 45.0%
ATCGGTCACTTGCTCAATCA+AGG - chr6_3:16948015-16948034 None:intergenic 45.0%
AAGTGCCTACAGACTTTGTG+TGG + chr6_3:16948082-16948101 Msa0942310:intron 45.0%
TTCCTCCACACAAAGTCTGT+AGG - chr6_3:16948090-16948109 None:intergenic 45.0%
ATCTGCGGATAGCTGGATAT+TGG + chr6_3:16948126-16948145 Msa0942310:intron 45.0%
GGATAGCTGGATATTGGTCA+GGG + chr6_3:16948132-16948151 Msa0942310:intron 45.0%
CTGGATATTGGTCAGGGATT+TGG + chr6_3:16948138-16948157 Msa0942310:intron 45.0%
CTACACAATTCAGGGGACAT+TGG - chr6_3:16948256-16948275 None:intergenic 45.0%
! AACATGTTGCTGCCCTTTTG+TGG + chr6_3:16948450-16948469 Msa0942310:intron 45.0%
GCAAGACGTTTCGGAAAATG+TGG + chr6_3:16948505-16948524 Msa0942310:intron 45.0%
CTATTCACCTTGTAGAGGAC+TGG + chr6_3:16948546-16948565 Msa0942310:intron 45.0%
CAGCAGCAGTAACACATTTG+AGG + chr6_3:16948601-16948620 Msa0942310:intron 45.0%
ATGGTTCTTCCTCTCTGTCT+TGG + chr6_3:16948762-16948781 Msa0942310:intron 45.0%
CATGTGTATCCGTGATGAAG+AGG + chr6_3:16948862-16948881 Msa0942310:intron 45.0%
TGCGAAGGCTATTCCTTTAC+CGG + chr6_3:16948898-16948917 Msa0942310:intron 45.0%
TTGTGCACACTGTTCAGGTA+GGG + chr6_3:16948921-16948940 Msa0942310:intron 45.0%
!! GCCTTTATTATGCTCTGGAG+TGG + chr6_3:16948954-16948973 Msa0942310:intron 45.0%
GCCACTCCAGAGCATAATAA+AGG - chr6_3:16948958-16948977 None:intergenic 45.0%
AGCCCAAATTCCGATACATC+CGG - chr6_3:16949058-16949077 None:intergenic 45.0%
AGTGAATCCTTTCCCACCAT+GGG - chr6_3:16949325-16949344 None:intergenic 45.0%
TTATAATAGTGACCGGAGGG+AGG + chr6_3:16949657-16949676 Msa0942310:intron 45.0%
TATAATAGTGACCGGAGGGA+GGG + chr6_3:16949658-16949677 Msa0942310:intron 45.0%
! CGCATTTTATATACAGGGGC+CGG + chr6_3:16949991-16950010 Msa0942310:intron 45.0%
! GCATTTTATATACAGGGGCC+GGG + chr6_3:16949992-16950011 Msa0942310:intron 45.0%
! CATTTTATATACAGGGGCCG+GGG + chr6_3:16949993-16950012 Msa0942310:intron 45.0%
! TTGTGTGAGCTTTAGCCACT+AGG + chr6_3:16950072-16950091 Msa0942310:intron 45.0%
!!! CCCTTTTTTTTTGTGCAGCG+TGG + chr6_3:16950757-16950776 Msa0942310:intron 45.0%
CCCACGCTGCACAAAAAAAA+AGG - chr6_3:16950761-16950780 None:intergenic 45.0%
CACAATGGGAATCATCACTG+TGG + chr6_3:16950801-16950820 Msa0942310:CDS 45.0%
! ACTGTGGTGTGGATTACTGT+TGG + chr6_3:16950817-16950836 Msa0942310:CDS 45.0%
TCCCTTCCAAATCTTGGCTT+TGG + chr6_3:16950860-16950879 Msa0942310:CDS 45.0%
GCCAAAGCCAAGATTTGGAA+GGG - chr6_3:16950864-16950883 None:intergenic 45.0%
AGCCAAAGCCAAGATTTGGA+AGG - chr6_3:16950865-16950884 None:intergenic 45.0%
! CATCTGTTCGATTTTCGGTC+CGG + chr6_3:16951279-16951298 Msa0942310:intron 45.0%
TCGGTCCGGTGTGAAAATAT+TGG + chr6_3:16951293-16951312 Msa0942310:intron 45.0%
CAGCACAATGCAAGTAGTTC+TGG + chr6_3:16951402-16951421 Msa0942310:intron 45.0%
GTGTTCCTTGATTTCTGTGG+AGG + chr6_3:16951623-16951642 Msa0942310:CDS 45.0%
CCATTCCTCCACAGAAATCA+AGG - chr6_3:16951631-16951650 None:intergenic 45.0%
CCTTGATTTCTGTGGAGGAA+TGG + chr6_3:16951628-16951647 Msa0942310:CDS 45.0%
GACTCTTGGGTGAATTTCTC+TGG + chr6_3:16951787-16951806 Msa0942310:intron 45.0%
! GTGAATTTCTCTGGGAACCT+TGG + chr6_3:16951796-16951815 Msa0942310:CDS 45.0%
CAAGTCTCCTTCAAATGTGC+CGG + chr6_3:16952232-16952251 Msa0942310:CDS 45.0%
!! TTCCCATGATAAGGTTGGTG+GGG + chr6_3:16952351-16952370 Msa0942310:three_prime_UTR 45.0%
ATCCCCACCAACCTTATCAT+GGG - chr6_3:16952356-16952375 None:intergenic 45.0%
AATCCCCACCAACCTTATCA+TGG - chr6_3:16952357-16952376 None:intergenic 45.0%
! GTGGGGATTTTCCCATTATG+AGG + chr6_3:16952368-16952387 Msa0942310:three_prime_UTR 45.0%
CATCCCCACTAACCTCATAA+TGG - chr6_3:16952383-16952402 None:intergenic 45.0%
GAACTGCGTGCTATACAGAT+AGG + chr6_3:16952414-16952433 Msa0942310:three_prime_UTR 45.0%
GGTAACACTAGAAGCCGAAT+GGG - chr6_3:16952658-16952677 None:intergenic 45.0%
AGGTAACACTAGAAGCCGAA+TGG - chr6_3:16952659-16952678 None:intergenic 45.0%
ATTCGGCTTCTAGTGTTACC+TGG + chr6_3:16952658-16952677 Msa0942310:three_prime_UTR 45.0%
TTCGGCTTCTAGTGTTACCT+GGG + chr6_3:16952659-16952678 Msa0942310:three_prime_UTR 45.0%
!!! GTTTTTATTTTATATAATAT+TGG - chr6_3:16944118-16944137 None:intergenic 5.0%
!! TAAAATAAAAACTAAAAATT+CGG + chr6_3:16944126-16944145 Msa0942310:five_prime_UTR 5.0%
!! AAATTCAAAAATTAAATTTA+AGG + chr6_3:16945443-16945462 Msa0942310:intron 5.0%
!! TAAAATTCAAAAAAATAAAT+GGG + chr6_3:16945817-16945836 Msa0942310:intron 5.0%
!!! TTTTTTTATTAATATATCAA+TGG - chr6_3:16946672-16946691 None:intergenic 5.0%
!! ATATTAATAAAAAAATCTAA+TGG + chr6_3:16946677-16946696 Msa0942310:intron 5.0%
!! AAAAAAAAAAAATCAAAAAA+AGG - chr6_3:16951188-16951207 None:intergenic 5.0%
GCAACGTCATTTGCAGCTAC+AGG - chr6_3:16946226-16946245 None:intergenic 50.0%
TTTGGCATACACCTCGTGTG+TGG - chr6_3:16946557-16946576 None:intergenic 50.0%
!! GCTCCAAGGTTGTGTTGGTT+GGG - chr6_3:16946947-16946966 None:intergenic 50.0%
! AGCTCCAAGGTTGTGTTGGT+TGG - chr6_3:16946948-16946967 None:intergenic 50.0%
ACGGTGGTGACCGGAATTAA+CGG + chr6_3:16946972-16946991 Msa0942310:intron 50.0%
GAGGTTGCTGCCGTTAATTC+CGG - chr6_3:16946985-16947004 None:intergenic 50.0%
! TGTTGTGTGTGATGGTGCTC+CGG - chr6_3:16947318-16947337 None:intergenic 50.0%
TGGGTGGTGAAGATAGCTGT+CGG - chr6_3:16947397-16947416 None:intergenic 50.0%
AGCACCACCGTGTCACAAAT+CGG + chr6_3:16947425-16947444 Msa0942310:intron 50.0%
! CACAGGTCCGATTTGTGACA+CGG - chr6_3:16947435-16947454 None:intergenic 50.0%
GTGTCACAAATCGGACCTGT+GGG + chr6_3:16947434-16947453 Msa0942310:intron 50.0%
TTGTTAGAGGAGGATCTCGG+TGG + chr6_3:16947784-16947803 Msa0942310:intron 50.0%
GAGGATCTCGGTGGTGTATA+GGG + chr6_3:16947793-16947812 Msa0942310:intron 50.0%
GTTCCGCAACAAATGCGCAT+TGG - chr6_3:16947889-16947908 None:intergenic 50.0%
! GCGCATTTGTTGCGGAACTT+TGG + chr6_3:16947891-16947910 Msa0942310:intron 50.0%
CCACGTTCCACATCTTAGAG+TGG - chr6_3:16947938-16947957 None:intergenic 50.0%
!! CCACTCTAAGATGTGGAACG+TGG + chr6_3:16947935-16947954 Msa0942310:intron 50.0%
!! CTCTAAGATGTGGAACGTGG+AGG + chr6_3:16947938-16947957 Msa0942310:intron 50.0%
! CCGAGGCATCATCGAATACT+TGG - chr6_3:16947971-16947990 None:intergenic 50.0%
TTGTAAAATGGCTGCAGCCG+AGG - chr6_3:16947988-16948007 None:intergenic 50.0%
TGCCTACAGACTTTGTGTGG+AGG + chr6_3:16948085-16948104 Msa0942310:intron 50.0%
ACTGTTCATCTGCGGATAGC+TGG + chr6_3:16948119-16948138 Msa0942310:intron 50.0%
CGGATAGCTGGATATTGGTC+AGG + chr6_3:16948131-16948150 Msa0942310:intron 50.0%
TCCTGTAAACGAACACGGGT+GGG - chr6_3:16948224-16948243 None:intergenic 50.0%
ATCCTGTAAACGAACACGGG+TGG - chr6_3:16948225-16948244 None:intergenic 50.0%
TGTGGATTCGAGCTGGAATG+TGG + chr6_3:16948339-16948358 Msa0942310:intron 50.0%
GTGGATTCGAGCTGGAATGT+GGG + chr6_3:16948340-16948359 Msa0942310:intron 50.0%
GTGAAAGGTCCTGCACCAAA+AGG - chr6_3:16948418-16948437 None:intergenic 50.0%
! CTGCCCTTTTGTGGAGTTTG+TGG + chr6_3:16948459-16948478 Msa0942310:intron 50.0%
CAGGGCTATTCACCTTGTAG+AGG + chr6_3:16948541-16948560 Msa0942310:intron 50.0%
CCATGTTCCAGTCCTCTACA+AGG - chr6_3:16948556-16948575 None:intergenic 50.0%
CCTTGTAGAGGACTGGAACA+TGG + chr6_3:16948553-16948572 Msa0942310:intron 50.0%
CGCTGTTGCAGCAGGTAAAT+TGG - chr6_3:16948579-16948598 None:intergenic 50.0%
TGACAGCAACATCAGCAGGT+CGG + chr6_3:16948628-16948647 Msa0942310:intron 50.0%
TTATGCGCTGCTGCCAGAAT+AGG - chr6_3:16948674-16948693 None:intergenic 50.0%
CAGCAGCGCATAATAACAGC+AGG + chr6_3:16948681-16948700 Msa0942310:intron 50.0%
! GGGAGTTTTTGTGCTTGCGA+AGG + chr6_3:16948883-16948902 Msa0942310:intron 50.0%
ACAGTGTGCACAACCGGTAA+AGG - chr6_3:16948914-16948933 None:intergenic 50.0%
ACCTGAACAGTGTGCACAAC+CGG - chr6_3:16948920-16948939 None:intergenic 50.0%
GTTGTGCACACTGTTCAGGT+AGG + chr6_3:16948920-16948939 Msa0942310:intron 50.0%
TGTGCACACTGTTCAGGTAG+GGG + chr6_3:16948922-16948941 Msa0942310:intron 50.0%
TGTTCAGGTAGGGGAAGCTA+TGG + chr6_3:16948931-16948950 Msa0942310:intron 50.0%
GTTCAGGTAGGGGAAGCTAT+GGG + chr6_3:16948932-16948951 Msa0942310:intron 50.0%
TAAGTCTCGCCCGGATGTAT+CGG + chr6_3:16949045-16949064 Msa0942310:intron 50.0%
GCCCGGATGTATCGGAATTT+GGG + chr6_3:16949053-16949072 Msa0942310:intron 50.0%
GCCCAAATTCCGATACATCC+GGG - chr6_3:16949057-16949076 None:intergenic 50.0%
TAACCGGAGACAAGCGAATG+AGG + chr6_3:16949138-16949157 Msa0942310:intron 50.0%
CTACCTCATTCGCTTGTCTC+CGG - chr6_3:16949144-16949163 None:intergenic 50.0%
!! GGTGGGACTAGCTTTAGATG+TGG - chr6_3:16949188-16949207 None:intergenic 50.0%
! CAACTTTCCCATGGTGGGAA+AGG + chr6_3:16949315-16949334 Msa0942310:intron 50.0%
GAGTGAATCCTTTCCCACCA+TGG - chr6_3:16949326-16949345 None:intergenic 50.0%
! TTGTGGAGAAGTGGAGTGTC+CGG - chr6_3:16950027-16950046 None:intergenic 50.0%
TGGGAATCATCACTGTGGTG+TGG + chr6_3:16950806-16950825 Msa0942310:CDS 50.0%
!! GATCGAATCGGCTTGAACTG+CGG + chr6_3:16951115-16951134 Msa0942310:intron 50.0%
GGCTAAAGAAGGCTCCCATT+CGG + chr6_3:16952641-16952660 Msa0942310:three_prime_UTR 50.0%
AGGCCCAACCAACACAACCT+TGG + chr6_3:16946941-16946960 Msa0942310:intron 55.0%
CCTGAGCTCCAAGGTTGTGT+TGG - chr6_3:16946952-16946971 None:intergenic 55.0%
CCAACACAACCTTGGAGCTC+AGG + chr6_3:16946949-16946968 Msa0942310:intron 55.0%
CACAACCTTGGAGCTCAGGA+CGG + chr6_3:16946953-16946972 Msa0942310:intron 55.0%
! GCTGTCGGTGAGAAGTGCAT+CGG - chr6_3:16947382-16947401 None:intergenic 55.0%
! AGGTCCGATTTGTGACACGG+TGG - chr6_3:16947432-16947451 None:intergenic 55.0%
CGTGTCACAAATCGGACCTG+TGG + chr6_3:16947433-16947452 Msa0942310:intron 55.0%
! GGGAAGCATGACTATCCCAC+AGG - chr6_3:16947452-16947471 None:intergenic 55.0%
!! AGCGACGCAACTGATGGGTT+GGG - chr6_3:16947472-16947491 None:intergenic 55.0%
! TAGCGACGCAACTGATGGGT+TGG - chr6_3:16947473-16947492 None:intergenic 55.0%
ACCCATCAGTTGCGTCGCTA+CGG + chr6_3:16947473-16947492 Msa0942310:intron 55.0%
ACCGTAGCGACGCAACTGAT+GGG - chr6_3:16947477-16947496 None:intergenic 55.0%
GGAGGATCTCGGTGGTGTAT+AGG + chr6_3:16947792-16947811 Msa0942310:intron 55.0%
TCTCGGTGGTGTATAGGGTC+AGG + chr6_3:16947798-16947817 Msa0942310:intron 55.0%
GTAAACGAACACGGGTGGGA+AGG - chr6_3:16948220-16948239 None:intergenic 55.0%
TCCCACCCGTGTTCGTTTAC+AGG + chr6_3:16948220-16948239 Msa0942310:intron 55.0%
TGACTGTTCCTTTGCGGTGC+AGG + chr6_3:16948316-16948335 Msa0942310:intron 55.0%
AATCCACACCTGCACCGCAA+AGG - chr6_3:16948327-16948346 None:intergenic 55.0%
!! GTTGACTCGCATCGCGTGAA+AGG - chr6_3:16948433-16948452 None:intergenic 55.0%
CGTTTCGGAAAATGTGGCGC+AGG + chr6_3:16948511-16948530 Msa0942310:intron 55.0%
ATGTGGCGCAGGTTGTAGAC+AGG + chr6_3:16948522-16948541 Msa0942310:intron 55.0%
TGTGGCGCAGGTTGTAGACA+GGG + chr6_3:16948523-16948542 Msa0942310:intron 55.0%
GAGCTGACAGCAACATCAGC+AGG + chr6_3:16948624-16948643 Msa0942310:intron 55.0%
AGCAGGTCGGTAGAAGCAAG+TGG + chr6_3:16948641-16948660 Msa0942310:intron 55.0%
AAGTGGCAGCAGGCCTATTC+TGG + chr6_3:16948658-16948677 Msa0942310:intron 55.0%
CTACACGTGGCTGCACACTA+CGG - chr6_3:16948724-16948743 None:intergenic 55.0%
GAAGCAGTGCGTGCTGAACA+TGG + chr6_3:16948743-16948762 Msa0942310:intron 55.0%
CTTCCTCTCTGTCTTGGCAG+AGG + chr6_3:16948768-16948787 Msa0942310:intron 55.0%
ACCGGTTGTGCACACTGTTC+AGG + chr6_3:16948916-16948935 Msa0942310:intron 55.0%
CGCCCGGATGTATCGGAATT+TGG + chr6_3:16949052-16949071 Msa0942310:intron 55.0%
TGAGGTAGCTCACACGCTAG+CGG + chr6_3:16949156-16949175 Msa0942310:intron 55.0%
! TGTGGAGAAGTGGAGTGTCC+GGG - chr6_3:16950026-16950045 None:intergenic 55.0%
GTCTCCTTCAAATGTGCCGG+TGG + chr6_3:16952235-16952254 Msa0942310:CDS 55.0%
TCAGCCACCGGCACATTTGA+AGG - chr6_3:16952242-16952261 None:intergenic 55.0%
GGTTAGTGGGGATGCTCTCT+TGG + chr6_3:16952389-16952408 Msa0942310:three_prime_UTR 55.0%
AACCTTGGAGCTCAGGACGG+TGG + chr6_3:16946956-16946975 Msa0942310:intron 60.0%
TGTTCACCCCGTCTTCTCCG+TGG + chr6_3:16947237-16947256 Msa0942310:intron 60.0%
TTCGCACCACGGAGAAGACG+GGG - chr6_3:16947246-16947265 None:intergenic 60.0%
CTTCGCACCACGGAGAAGAC+GGG - chr6_3:16947247-16947266 None:intergenic 60.0%
CCTTCGCACCACGGAGAAGA+CGG - chr6_3:16947248-16947267 None:intergenic 60.0%
GAAGGCCGTGTCTCCGTTGT+GGG + chr6_3:16947263-16947282 Msa0942310:intron 60.0%
! GTGTGTGATGGTGCTCCGGT+CGG - chr6_3:16947314-16947333 None:intergenic 60.0%
! GTCGGTGAGAAGTGCATCGG+CGG - chr6_3:16947379-16947398 None:intergenic 60.0%
ACGGTGGTGCTCACAGTGGT+GGG - chr6_3:16947416-16947435 None:intergenic 60.0%
TGACACGGTGGTGCTCACAG+TGG - chr6_3:16947420-16947439 None:intergenic 60.0%
CACCGTAGCGACGCAACTGA+TGG - chr6_3:16947478-16947497 None:intergenic 60.0%
GCTACGGTGTTCTCCGTCGT+CGG + chr6_3:16947489-16947508 Msa0942310:intron 60.0%
TGTTCTCCGTCGTCGGCGAA+GGG + chr6_3:16947496-16947515 Msa0942310:intron 60.0%
ATGTTCCCCTTCGCCGACGA+CGG - chr6_3:16947505-16947524 None:intergenic 60.0%
GTTCCTTTGCGGTGCAGGTG+TGG + chr6_3:16948321-16948340 Msa0942310:intron 60.0%
GTGCAGGTGTGGATTCGAGC+TGG + chr6_3:16948332-16948351 Msa0942310:intron 60.0%
CGGTAGAAGCAAGTGGCAGC+AGG + chr6_3:16948648-16948667 Msa0942310:intron 60.0%
GCACGCACTGCTTCTACACG+TGG - chr6_3:16948737-16948756 None:intergenic 60.0%
TCTTGGCAGAGGCCGCATCA+AGG + chr6_3:16948779-16948798 Msa0942310:intron 60.0%
GAGGTAGCTCACACGCTAGC+GGG + chr6_3:16949157-16949176 Msa0942310:intron 60.0%
AGGTAGCTCACACGCTAGCG+GGG + chr6_3:16949158-16949177 Msa0942310:intron 60.0%
! GTGGAGAAGTGGAGTGTCCG+GGG - chr6_3:16950025-16950044 None:intergenic 60.0%
CACCACCGTCCTGAGCTCCA+AGG - chr6_3:16946961-16946980 None:intergenic 65.0%
GAGCTCAGGACGGTGGTGAC+CGG + chr6_3:16946963-16946982 Msa0942310:intron 65.0%
CCGTCTTCTCCGTGGTGCGA+AGG + chr6_3:16947245-16947264 Msa0942310:intron 65.0%
GAGACACGGCCTTCGCACCA+CGG - chr6_3:16947257-16947276 None:intergenic 65.0%
CGAAGGCCGTGTCTCCGTTG+TGG + chr6_3:16947262-16947281 Msa0942310:intron 65.0%
GGCTGCCCACAACGGAGACA+CGG - chr6_3:16947271-16947290 None:intergenic 65.0%
CGGCTAGTGGCTGCCCACAA+CGG - chr6_3:16947279-16947298 None:intergenic 65.0%
GATGGTGCTCCGGTCGGAGA+CGG - chr6_3:16947308-16947327 None:intergenic 65.0%
! GTGGTGCTCACAGTGGTGGG+TGG - chr6_3:16947413-16947432 None:intergenic 65.0%
CACGGTGGTGCTCACAGTGG+TGG - chr6_3:16947417-16947436 None:intergenic 65.0%
GTGTTCTCCGTCGTCGGCGA+AGG + chr6_3:16947495-16947514 Msa0942310:intron 65.0%
GTTCTCCGTCGTCGGCGAAG+GGG + chr6_3:16947497-16947516 Msa0942310:intron 65.0%
CTGCTGTGCGCTGTTGCAGC+AGG - chr6_3:16948587-16948606 None:intergenic 65.0%
CGGCCTCTGCCAAGACAGAG+AGG - chr6_3:16948774-16948793 None:intergenic 65.0%
GGTAGCTCACACGCTAGCGG+GGG + chr6_3:16949159-16949178 Msa0942310:intron 65.0%
AGTGTCCGGGGTTCGAACCC+CGG - chr6_3:16950013-16950032 None:intergenic 65.0%
! GAGACGGCGGTGACGGCTAG+TGG - chr6_3:16947292-16947311 None:intergenic 70.0%
ACCTGGGACCGTCCCCCATC+AGG + chr6_3:16952675-16952694 Msa0942310:three_prime_UTR 70.0%
GGACCGTCCCCCATCAGGCA+TGG + chr6_3:16952680-16952699 Msa0942310:three_prime_UTR 70.0%
CCGGTCGGAGACGGCGGTGA+CGG - chr6_3:16947299-16947318 None:intergenic 75.0%
CCGTCACCGCCGTCTCCGAC+CGG + chr6_3:16947296-16947315 Msa0942310:intron 75.0%
GGTGCTCCGGTCGGAGACGG+CGG - chr6_3:16947305-16947324 None:intergenic 75.0%
AGGGGCCGGGGTTCGAACCC+CGG + chr6_3:16950005-16950024 Msa0942310:intron 75.0%
GCCTGATGGGGGACGGTCCC+AGG - chr6_3:16952679-16952698 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
chr6_3 gene 16944083 16952703 16944083 ID=Msa0942310;Name=Msa0942310
chr6_3 mRNA 16944083 16952703 16944083 ID=Msa0942310-mRNA-1;Parent=Msa0942310;Name=Msa0942310-mRNA-1;_AED=0.27;_eAED=0.27;_QI=179|1|1|1|0.85|1|8|432|279
chr6_3 exon 16944083 16944386 16944083 ID=Msa0942310-mRNA-1:exon:5112;Parent=Msa0942310-mRNA-1
chr6_3 exon 16944469 16944601 16944469 ID=Msa0942310-mRNA-1:exon:5113;Parent=Msa0942310-mRNA-1
chr6_3 exon 16946217 16946306 16946217 ID=Msa0942310-mRNA-1:exon:5114;Parent=Msa0942310-mRNA-1
chr6_3 exon 16950775 16950899 16950775 ID=Msa0942310-mRNA-1:exon:5115;Parent=Msa0942310-mRNA-1
chr6_3 exon 16951405 16951447 16951405 ID=Msa0942310-mRNA-1:exon:5116;Parent=Msa0942310-mRNA-1
chr6_3 exon 16951572 16951689 16951572 ID=Msa0942310-mRNA-1:exon:5117;Parent=Msa0942310-mRNA-1
chr6_3 exon 16951788 16951837 16951788 ID=Msa0942310-mRNA-1:exon:5118;Parent=Msa0942310-mRNA-1
chr6_3 exon 16952116 16952703 16952116 ID=Msa0942310-mRNA-1:exon:5119;Parent=Msa0942310-mRNA-1
chr6_3 five_prime_UTR 16944083 16944261 16944083 ID=Msa0942310-mRNA-1:five_prime_utr;Parent=Msa0942310-mRNA-1
chr6_3 CDS 16944262 16944386 16944262 ID=Msa0942310-mRNA-1:cds;Parent=Msa0942310-mRNA-1
chr6_3 CDS 16944469 16944601 16944469 ID=Msa0942310-mRNA-1:cds;Parent=Msa0942310-mRNA-1
chr6_3 CDS 16946217 16946306 16946217 ID=Msa0942310-mRNA-1:cds;Parent=Msa0942310-mRNA-1
chr6_3 CDS 16950775 16950899 16950775 ID=Msa0942310-mRNA-1:cds;Parent=Msa0942310-mRNA-1
chr6_3 CDS 16951405 16951447 16951405 ID=Msa0942310-mRNA-1:cds;Parent=Msa0942310-mRNA-1
chr6_3 CDS 16951572 16951689 16951572 ID=Msa0942310-mRNA-1:cds;Parent=Msa0942310-mRNA-1
chr6_3 CDS 16951788 16951837 16951788 ID=Msa0942310-mRNA-1:cds;Parent=Msa0942310-mRNA-1
chr6_3 CDS 16952116 16952271 16952116 ID=Msa0942310-mRNA-1:cds;Parent=Msa0942310-mRNA-1
chr6_3 three_prime_UTR 16952272 16952703 16952272 ID=Msa0942310-mRNA-1:three_prime_utr;Parent=Msa0942310-mRNA-1
Gene Sequence

>Msa0942310

ATGGAGGAGACATCATGGAACTCTGAAACTTTTAAAATAGCATACACCGTGTTTGGATGGATTGCTTTTGTGGTTTGGTCTAGTAGTTTTTATCCTCAATTTATCTTGAACTACTCAAGGAAAAGTGTGGTGGGATTGAACTTCAACTATTTGATATTGAACAACACCAAACATACCTTGTACCTCCTCTACAATGCTTCCTTGTACTTTAGCCCTAATGTTCGGTTTCAATATCATCAAAAATATGGATTTGATCAGATGATACCTGTAGCTGCAAATGACGTTGCCTTCTCAACACATGCTGTTTTGTTGACCTTAGTCTTATTGTTCCAAGTTGCAATTTATGAGCGTGGGAATCAATCAATATCAAAAATCACAATGGGAATCATCACTGTGGTGTGGATTACTGTTGGAGTTTGTTCCTTCATAGCATTCCCTTCCAAATCTTGGCTTTGGCTAATTTCCATCTTTAACACAATGCAAGTAGTTCTGGCAACTATCAAATATATTCCACAGGCATTTATGAACTTCATGATCAAGAGCACAGATGGATTTAGCATTGGAAATGTGTTCCTTGATTTCTGTGGAGGAATGGCAAACTATGCTCAGATGGTTATACAATCAATTGATCAAAACTCTTGGGTGAATTTCTCTGGGAACCTTGGAAAAGTATTGTTATCTCTGGTTTGTATGTTCTTTGATCTTCTTTTCATGTGTCAACATTATGTGTTGTATCCATCAAAGAAAACATCATCAATTTCTCCTTCTAAACTCGATGACAACATCAAAGAGCCCCTCATCAAGTCTCCTTCAAATGTGCCGGTGGCTGAAAATGTTTGA
Protein sequence

>Msa0942310

MEETSWNSETFKIAYTVFGWIAFVVWSSSFYPQFILNYSRKSVVGLNFNYLILNNTKHTLYLLYNASLYFSPNVRFQYHQKYGFDQMIPVAANDVAFSTHAVLLTLVLLFQVAIYERGNQSISKITMGIITVVWITVGVCSFIAFPSKSWLWLISIFNTMQVVLATIKYIPQAFMNFMIKSTDGFSIGNVFLDFCGGMANYAQMVIQSIDQNSWVNFSGNLGKVLLSLVCMFFDLLFMCQHYVLYPSKKTSSISPSKLDDNIKEPLIKSPSNVPVAENV*