AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0873630

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 99 sgRNAs with CRISPR-Local

Find 323 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGTTCCTCCTTCAAGAATTC+TGG 0.172529 6_1:+9225475 Msa0873630:three_prime_UTR
TTCCCTCATGTAGTATTTAA+AGG 0.173459 6_1:-9225776 None:intergenic
TACAATGATAATGTGTATTA+TGG 0.176162 6_1:-9225046 None:intergenic
CAGAATTTGCAGTGCAGCGC+AGG 0.294148 6_1:-9225869 None:intergenic
TTCATCTCTGTGTGTGGTTA+AGG 0.301352 6_1:-9220818 None:intergenic
TAATTATAAATATAATTGTT+AGG 0.307154 6_1:+9225362 Msa0873630:three_prime_UTR
AACAGATCTGAACAATAAAA+AGG 0.324414 6_1:-9220623 None:intergenic
AAGTCACAAGTGACAAATTC+AGG 0.328865 6_1:+9221787 Msa0873630:five_prime_UTR
GACTCTGCATAAGACAATAA+TGG 0.355828 6_1:+9225329 Msa0873630:three_prime_UTR
ATCCGCCGTGTTCGTTTGAA+TGG 0.359236 6_1:+9220697 Msa0873630:five_prime_UTR
GTTGAGGATGTTGGCATAGT+TGG 0.363283 6_1:+9221716 Msa0873630:five_prime_UTR
TGCCATCCGGCCGCCTTCTT+AGG 0.364215 6_1:+9220550 Msa0873630:five_prime_UTR
AGACAATTCCGCAAAGCGTT+TGG 0.379036 6_1:-9224959 None:intergenic
TAGGTACCACCGTCGCTTCT+AGG 0.379077 6_1:-9220780 None:intergenic
ACCATTTCTCCCCATCTAGA+TGG 0.390770 6_1:+9221845 Msa0873630:CDS
CTGCAGATGCAGATGTTGAT+AGG 0.392164 6_1:+9225889 Msa0873630:three_prime_UTR
TTACAGAAGGTCCATCTAGA+TGG 0.393898 6_1:-9221856 None:intergenic
AATGTTGAGGCGGCTGTGTT+TGG 0.404045 6_1:-9220528 None:intergenic
TAGTACAAAACAGAGGTATA+TGG 0.414342 6_1:-9225285 None:intergenic
CGAAAGAGCCTTGGAGAGAA+AGG 0.423381 6_1:+9225800 Msa0873630:three_prime_UTR
AGAGATGAGTTCAAAATTAG+TGG 0.424415 6_1:-9220581 None:intergenic
AGAAAGAGCCTTGGAGAGAA+AGG 0.426750 6_1:+9225845 Msa0873630:three_prime_UTR
ACTCTGCATAAGACAATAAT+GGG 0.428670 6_1:+9225330 Msa0873630:three_prime_UTR
ACAATGATAATGTGTATTAT+GGG 0.429167 6_1:-9225045 None:intergenic
ATCATGCCCCACTCCATGAA+TGG 0.434415 6_1:-9221814 None:intergenic
AGATGTTGATAGGTTCATAT+AGG 0.436481 6_1:+9225899 Msa0873630:three_prime_UTR
GCCTTCATACTGCTTTCTGC+TGG 0.438656 6_1:+9225449 Msa0873630:three_prime_UTR
AATTATAAATATAATTGTTA+GGG 0.440124 6_1:+9225363 Msa0873630:three_prime_UTR
GTTCCTCCTTCAAGAATTCT+GGG 0.442364 6_1:+9225476 Msa0873630:three_prime_UTR
TTGTCTCCCAGAATTCTTGA+AGG 0.447191 6_1:-9225482 None:intergenic
GCTGCTATCCAAACGCTTTG+CGG 0.447265 6_1:+9224951 Msa0873630:CDS
TCCATCTAGATGGGGAGAAA+TGG 0.448127 6_1:-9221846 None:intergenic
CAACTAAGAGCTTATCTCAT+TGG 0.455962 6_1:-9225599 None:intergenic
AAATTCAGGAAACCCATTCA+TGG 0.456574 6_1:+9221801 Msa0873630:exon
CTAATATCACGATCTGATAG+AGG 0.463081 6_1:-9220754 None:intergenic
CATAGTTGGTGCTCCAATGC+AGG 0.464430 6_1:+9221730 Msa0873630:five_prime_UTR
TTGGAGAGAAAGGAAGGGCT+TGG 0.464845 6_1:+9225810 Msa0873630:three_prime_UTR
CACGGCGGATCCACGGTGGC+TGG 0.468254 6_1:-9220684 None:intergenic
TCATGCCCCACTCCATGAAT+GGG 0.476406 6_1:-9221813 None:intergenic
AAAGGTTGGCTTTGTAGAGA+AGG 0.479190 6_1:-9220605 None:intergenic
GTTAGAACCCACGCTGGTTG+AGG 0.491363 6_1:+9221700 Msa0873630:five_prime_UTR
ATATGTAGAGAGAGAAAGAG+AGG 0.492765 6_1:-9220500 None:intergenic
AAGCCCTTCCTTTCTCTCCA+AGG 0.495149 6_1:-9225808 None:intergenic
TTTGCGGAATTGTCTGATGA+AGG 0.504707 6_1:+9224967 Msa0873630:CDS
TGAGGGAAGCGAAAGAGCCT+TGG 0.511561 6_1:+9225791 Msa0873630:three_prime_UTR
GTTGAGGCGGCTGTGTTTGG+TGG 0.512688 6_1:-9220525 None:intergenic
GTTCAAAATTAGTGGTGGTA+TGG 0.514683 6_1:-9220573 None:intergenic
CGTTTGGATAGCAGCCAAGC+AGG 0.516208 6_1:-9224943 None:intergenic
ACGATCTGATAGAGGGTTGT+CGG 0.521070 6_1:-9220746 None:intergenic
TACAGAAGGTCCATCTAGAT+GGG 0.521806 6_1:-9221855 None:intergenic
CCCACGCTGGTTGAGGATGT+TGG 0.525901 6_1:+9221707 Msa0873630:five_prime_UTR
GCGCAGGGCCTTTCTCTCCA+AGG 0.526608 6_1:-9225853 None:intergenic
GCCGCCTCAACATTGCCATC+CGG 0.529144 6_1:+9220537 Msa0873630:five_prime_UTR
TTGCCTTTAAATACTACATG+AGG 0.534140 6_1:+9225773 Msa0873630:three_prime_UTR
CGCCGTGTTCGTTTGAATGG+AGG 0.537898 6_1:+9220700 Msa0873630:five_prime_UTR
TTCTTGTCGACATACCTGCT+TGG 0.538298 6_1:+9224929 Msa0873630:CDS
AGAGCCTTGGAGAGAAAGGA+AGG 0.541262 6_1:+9225804 Msa0873630:three_prime_UTR
AGGAAACCCATTCATGGAGT+GGG 0.541842 6_1:+9221807 Msa0873630:exon
GTGAGAGAGAGAAAGAGCCT+TGG 0.551422 6_1:+9225836 Msa0873630:three_prime_UTR
GTATGGCCTAAGAAGGCGGC+CGG 0.551893 6_1:-9220556 None:intergenic
AGTGGTGGTATGGCCTAAGA+AGG 0.553576 6_1:-9220563 None:intergenic
GGCCTAAGAAGGCGGCCGGA+TGG 0.555381 6_1:-9220552 None:intergenic
GCCAGCAGAAAGCAGTATGA+AGG 0.568670 6_1:-9225450 None:intergenic
TAGAGGGTTGTCGGTAGTAG+TGG 0.576250 6_1:-9220737 None:intergenic
AGAATTTGCAGTGCAGCGCA+GGG 0.576307 6_1:-9225868 None:intergenic
CATACTGCTTTCTGCTGGCG+TGG 0.581915 6_1:+9225454 Msa0873630:three_prime_UTR
CAAAATGTGATGGCAAGGCA+AGG 0.585482 6_1:+9225747 Msa0873630:three_prime_UTR
AGAGGCATAAAGTTGCATGA+TGG 0.590712 6_1:+9225508 Msa0873630:three_prime_UTR
TCTCCCAGAATTCTTGAAGG+AGG 0.595273 6_1:-9225479 None:intergenic
AAACGAACACGGCGGATCCA+CGG 0.597311 6_1:-9220691 None:intergenic
ACAGAGAGTCATAGAGACGT+TGG 0.601431 6_1:-9220455 None:intergenic
GCCGGATGGCAATGTTGAGG+CGG 0.603582 6_1:-9220538 None:intergenic
ATAGTTGGTGCTCCAATGCA+GGG 0.604033 6_1:+9221731 Msa0873630:five_prime_UTR
ATGAAAACTGCAGACGACAC+CGG 0.606370 6_1:+9220836 Msa0873630:five_prime_UTR
CAGGAAACCCATTCATGGAG+TGG 0.607454 6_1:+9221806 Msa0873630:exon
TGCCTTTAAATACTACATGA+GGG 0.610711 6_1:+9225774 Msa0873630:three_prime_UTR
GCTTGCAAAATGTGATGGCA+AGG 0.615832 6_1:+9225742 Msa0873630:three_prime_UTR
ATCACATCTGCAGATTTGTG+TGG 0.619954 6_1:-9224992 None:intergenic
TAATATCACGATCTGATAGA+GGG 0.623312 6_1:-9220753 None:intergenic
ACAAATCTGCAGATGTGATG+AGG 0.630753 6_1:+9224996 Msa0873630:CDS
GATGAGTTCAAAATTAGTGG+TGG 0.631675 6_1:-9220578 None:intergenic
GCCAACATCCTCAACCAGCG+TGG 0.639391 6_1:-9221708 None:intergenic
GAGCCTTGGAGAGAAAGGAA+GGG 0.646139 6_1:+9225805 Msa0873630:three_prime_UTR
GGAAACCCATTCATGGAGTG+GGG 0.652741 6_1:+9221808 Msa0873630:exon
GTCCTCCATTCAAACGAACA+CGG 0.653128 6_1:-9220702 None:intergenic
CCAACATCCTCAACCAGCGT+GGG 0.654114 6_1:-9221707 None:intergenic
GCGGCCGGATGGCAATGTTG+AGG 0.663543 6_1:-9220541 None:intergenic
AAGGTCTTAGAAGCTGTCGT+AGG 0.673848 6_1:-9220799 None:intergenic
TATTAGACGCCTAGAAGCGA+CGG 0.676167 6_1:+9220771 Msa0873630:five_prime_UTR
AATTCTGGGAGACAAAGAAG+AGG 0.676675 6_1:+9225490 Msa0873630:three_prime_UTR
GGTGGTATGGCCTAAGAAGG+CGG 0.677109 6_1:-9220560 None:intergenic
ACAGAAGGTCCATCTAGATG+GGG 0.687511 6_1:-9221854 None:intergenic
TAGACGCCTAGAAGCGACGG+TGG 0.706943 6_1:+9220774 Msa0873630:five_prime_UTR
TTTGGGGTTAGAACCCACGC+TGG 0.732547 6_1:+9221694 Msa0873630:five_prime_UTR
CGAACACGGCGGATCCACGG+TGG 0.751314 6_1:-9220688 None:intergenic
ACATTCTTAGTACAAAACAG+AGG 0.764301 6_1:-9225292 None:intergenic
GTTCATTTATCCAGCCACCG+TGG 0.765033 6_1:+9220674 Msa0873630:five_prime_UTR
CTCCATTCAAACGAACACGG+CGG 0.804040 6_1:-9220699 None:intergenic
GGTGGCTGGATAAATGAACG+CGG 0.804150 6_1:-9220670 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTAAATTTAAATTATTTAAT+TGG + chr6_1:9224440-9224459 Msa0873630:intron 0.0%
!!! ATTAATTTTATTAATTTTAT+TGG + chr6_1:9224807-9224826 Msa0873630:intron 0.0%
!! AGAATATATTGTTAATATTT+AGG + chr6_1:9222058-9222077 Msa0873630:intron 10.0%
!!! ATTGGTAAAATTATAATTTT+TGG + chr6_1:9223628-9223647 Msa0873630:intron 10.0%
!! GAAATAAAATGAAAAAAATT+TGG - chr6_1:9223796-9223815 None:intergenic 10.0%
!! ATTGGTAAAATTATAATTTA+TGG + chr6_1:9224848-9224867 Msa0873630:intron 10.0%
!! AAATGAAAAATAAAAAAGGA+CGG + chr6_1:9221210-9221229 Msa0873630:intron 15.0%
!! ATGAATAAATAATAATGGTT+AGG + chr6_1:9221255-9221274 Msa0873630:intron 15.0%
!! TGAATAAATAATAATGGTTA+GGG + chr6_1:9221256-9221275 Msa0873630:intron 15.0%
!!! TTAATATTTAGGCTTTATTT+GGG + chr6_1:9222069-9222088 Msa0873630:intron 15.0%
!!! ATGAATACTTTTGTTTTTTA+CGG + chr6_1:9222115-9222134 Msa0873630:intron 15.0%
!! AAACATAGTTTGAAAAAAAA+GGG - chr6_1:9222278-9222297 None:intergenic 15.0%
!!! TTTTTTTTATCTGTTTTTTG+TGG + chr6_1:9222552-9222571 Msa0873630:intron 15.0%
!! TATTTCAATTGTTAAATGAA+AGG - chr6_1:9223061-9223080 None:intergenic 15.0%
!! TGAAGCAAAAATTAATAAAA+TGG + chr6_1:9223114-9223133 Msa0873630:intron 15.0%
!!! ATTTAATTTAAATATGTGTG+TGG - chr6_1:9224426-9224445 None:intergenic 15.0%
!!! TATTATTTTTAACTTGCAAT+TGG + chr6_1:9225178-9225197 Msa0873630:three_prime_UTR 15.0%
!!! TTTTAAGTTTTGAACCTAAA+AGG + chr6_1:9220989-9221008 Msa0873630:intron 20.0%
!!! AGTATAATAACAAACCTTTT+AGG - chr6_1:9221006-9221025 None:intergenic 20.0%
!! TGTTATTATACTTGTAACAT+AGG + chr6_1:9221014-9221033 Msa0873630:intron 20.0%
!! AATGAAAAATAAAAAAGGAC+GGG + chr6_1:9221211-9221230 Msa0873630:intron 20.0%
!! ATCTAAGTTATACATGATTT+AGG + chr6_1:9221367-9221386 Msa0873630:intron 20.0%
!! AGTATGAAATGTTAACTTTA+TGG + chr6_1:9221952-9221971 Msa0873630:intron 20.0%
!!! GTTAATATTTAGGCTTTATT+TGG + chr6_1:9222068-9222087 Msa0873630:intron 20.0%
!!! TAATATTTAGGCTTTATTTG+GGG + chr6_1:9222070-9222089 Msa0873630:intron 20.0%
!!! TGAATACTTTTGTTTTTTAC+GGG + chr6_1:9222116-9222135 Msa0873630:intron 20.0%
!! CAAACATAGTTTGAAAAAAA+AGG - chr6_1:9222279-9222298 None:intergenic 20.0%
!!! TTTGTAACATTTTTTAGCTA+TGG - chr6_1:9222305-9222324 None:intergenic 20.0%
!! TAATTCATTTCCAAGTTTAA+TGG - chr6_1:9222497-9222516 None:intergenic 20.0%
!! ATTAAACTTGGAAATGAATT+AGG + chr6_1:9222496-9222515 Msa0873630:intron 20.0%
!!! TTACAATGATAATGTGTATT+TGG - chr6_1:9223298-9223317 None:intergenic 20.0%
!!! TTATTATTTTTAGCTTGCAA+TGG + chr6_1:9223464-9223483 Msa0873630:intron 20.0%
!!! TATTATTTTTAGCTTGCAAT+GGG + chr6_1:9223465-9223484 Msa0873630:intron 20.0%
!!! AAAAATGGGTAATGTTTTTT+CGG + chr6_1:9223673-9223692 Msa0873630:intron 20.0%
!! ATTCAATTGATGAAATGAAA+AGG - chr6_1:9223954-9223973 None:intergenic 20.0%
!! AGAAGTTTGAACAAATAAAT+CGG - chr6_1:9224396-9224415 None:intergenic 20.0%
!! AACATGATTAACCATTATAA+TGG + chr6_1:9224574-9224593 Msa0873630:intron 20.0%
!! TTATATGTAAGGAAAATATG+AGG - chr6_1:9224691-9224710 None:intergenic 20.0%
!! TCATTCAATCATTATATGTA+AGG - chr6_1:9224702-9224721 None:intergenic 20.0%
!!! ACAATGATAATGTGTATTAT+GGG - chr6_1:9225048-9225067 None:intergenic 20.0%
!!! TACAATGATAATGTGTATTA+TGG - chr6_1:9225049-9225068 None:intergenic 20.0%
! AACAGATCTGAACAATAAAA+AGG - chr6_1:9220626-9220645 None:intergenic 25.0%
! ATGAAAAATAAAAAAGGACG+GGG + chr6_1:9221212-9221231 Msa0873630:intron 25.0%
!!! TCACAGTTTTTAAGTCAAAA+AGG - chr6_1:9221319-9221338 None:intergenic 25.0%
!! TTAATACTATGTTTTGCCAT+TGG + chr6_1:9221533-9221552 Msa0873630:intron 25.0%
! GAAAATGAACTCAAAGTTAA+GGG - chr6_1:9221618-9221637 None:intergenic 25.0%
! AGAAAATGAACTCAAAGTTA+AGG - chr6_1:9221619-9221638 None:intergenic 25.0%
!! ATTTTCCTAAGAGTTTAAGA+AGG + chr6_1:9221650-9221669 Msa0873630:intron 25.0%
!! ATTTCTTTTGAACAGATGTT+TGG + chr6_1:9221676-9221695 Msa0873630:intron 25.0%
!! TTTCTTTTGAACAGATGTTT+GGG + chr6_1:9221677-9221696 Msa0873630:intron 25.0%
!! GAAAATATGAAGAGTATAAG+AGG - chr6_1:9221891-9221910 None:intergenic 25.0%
! AAATGTTAACTTTATGGACA+TGG + chr6_1:9221958-9221977 Msa0873630:intron 25.0%
! TTCTTACATGTAGTAGTATT+TGG - chr6_1:9222042-9222061 None:intergenic 25.0%
!!! GAATACTTTTGTTTTTTACG+GGG + chr6_1:9222117-9222136 Msa0873630:intron 25.0%
!!! TTTTTTCTTCCCACATTTTA+AGG + chr6_1:9222198-9222217 Msa0873630:intron 25.0%
! AGAAGACAAAAAGTAAGATA+AGG + chr6_1:9222395-9222414 Msa0873630:intron 25.0%
! AGATAAGGTTATAAAAGTTC+AGG + chr6_1:9222410-9222429 Msa0873630:intron 25.0%
!! CAAAACTCAAAGTATTAACA+AGG - chr6_1:9222742-9222761 None:intergenic 25.0%
!! AGAATTTGAGTTAAAGTCAA+AGG - chr6_1:9222831-9222850 None:intergenic 25.0%
!! AAGTTTTCAAAAGATGGTTA+TGG + chr6_1:9222930-9222949 Msa0873630:intron 25.0%
!! ATAAGATATTAGCTTCAACA+AGG - chr6_1:9223157-9223176 None:intergenic 25.0%
! TTGTTGAAGCTAATATCTTA+TGG + chr6_1:9223156-9223175 Msa0873630:intron 25.0%
! TAGTAGGAGAGTTTATTATA+AGG - chr6_1:9223531-9223550 None:intergenic 25.0%
!!! TAATTTTTGGAGACATCTTA+TGG + chr6_1:9223641-9223660 Msa0873630:intron 25.0%
!!! TTATGGATTAGACAGAAAAA+TGG + chr6_1:9223658-9223677 Msa0873630:intron 25.0%
!!! TATGGATTAGACAGAAAAAT+GGG + chr6_1:9223659-9223678 Msa0873630:intron 25.0%
!! AAAAATTTGGATACCCATTT+TGG - chr6_1:9223783-9223802 None:intergenic 25.0%
! TATTCATCGTTATCAAAAGA+AGG - chr6_1:9223837-9223856 None:intergenic 25.0%
! AAGAGTCTTAATCATTATGA+TGG - chr6_1:9223925-9223944 None:intergenic 25.0%
!!! TTAATACATTGTTTTGCCTT+TGG + chr6_1:9224087-9224106 Msa0873630:intron 25.0%
! AGAAAATAAACTCAAAGTGA+AGG - chr6_1:9224142-9224161 None:intergenic 25.0%
!!! AAGTTTTCAAATGTTGGTTA+TGG + chr6_1:9224519-9224538 Msa0873630:intron 25.0%
!! TACTATGAGAGTTTTCTATA+AGG - chr6_1:9224629-9224648 None:intergenic 25.0%
! CAATTGTAGAGTATGAAAAA+TGG + chr6_1:9225651-9225670 Msa0873630:three_prime_UTR 25.0%
!!! GTAAAAAGAAGCATAGATTT+TGG + chr6_1:9225720-9225739 Msa0873630:three_prime_UTR 25.0%
!!! TTCATATAGGTTTTATGTTG+TGG + chr6_1:9225912-9225931 Msa0873630:three_prime_UTR 25.0%
!!! TCATATAGGTTTTATGTTGT+GGG + chr6_1:9225913-9225932 Msa0873630:three_prime_UTR 25.0%
AGAGATGAGTTCAAAATTAG+TGG - chr6_1:9220584-9220603 None:intergenic 30.0%
GATCTGAACAATAAAAAGGT+TGG - chr6_1:9220622-9220641 None:intergenic 30.0%
TAATATCACGATCTGATAGA+GGG - chr6_1:9220756-9220775 None:intergenic 30.0%
!!! ATCTTTTTTCATCTATGCTC+CGG - chr6_1:9220858-9220877 None:intergenic 30.0%
!! ACTGTTTTAGATCTAAGCTT+TGG - chr6_1:9220887-9220906 None:intergenic 30.0%
GATTATGCATGTACTTTCAT+TGG + chr6_1:9220950-9220969 Msa0873630:intron 30.0%
!!! ATCTCATTTTGAAGCTGTAT+GGG - chr6_1:9221178-9221197 None:intergenic 30.0%
!!! AATCTCATTTTGAAGCTGTA+TGG - chr6_1:9221179-9221198 None:intergenic 30.0%
GAAAATCTAAGAACACGATA+GGG - chr6_1:9221588-9221607 None:intergenic 30.0%
ATCAACCTTCTTAAACTCTT+AGG - chr6_1:9221658-9221677 None:intergenic 30.0%
! TTCTTTTGAACAGATGTTTG+GGG + chr6_1:9221678-9221697 Msa0873630:intron 30.0%
TTAACTTTATGGACATGGTA+AGG + chr6_1:9221963-9221982 Msa0873630:intron 30.0%
TAACTTTATGGACATGGTAA+GGG + chr6_1:9221964-9221983 Msa0873630:intron 30.0%
TTACATGTAGTAGTATTTGG+TGG - chr6_1:9222039-9222058 None:intergenic 30.0%
AAATACAGCTATAGCAGAAA+AGG - chr6_1:9222224-9222243 None:intergenic 30.0%
AGACGATTTACAAATAGTCT+TGG - chr6_1:9222334-9222353 None:intergenic 30.0%
! ATCGTCTTTTGTGAAACTTT+TGG + chr6_1:9222347-9222366 Msa0873630:intron 30.0%
! GTTTAATGGCATCATTTTGA+TGG - chr6_1:9222483-9222502 None:intergenic 30.0%
CAAAATGATGCCATTAAACT+TGG + chr6_1:9222484-9222503 Msa0873630:intron 30.0%
!!! TTATCTGTTTTTTGTGGAAG+AGG + chr6_1:9222558-9222577 Msa0873630:intron 30.0%
TTCAGAAGCAATGTTGTAAA+GGG - chr6_1:9222794-9222813 None:intergenic 30.0%
ATTCAGAAGCAATGTTGTAA+AGG - chr6_1:9222795-9222814 None:intergenic 30.0%
TTTGTTACACAAGGTTTCAT+GGG - chr6_1:9222874-9222893 None:intergenic 30.0%
!! CCATCTTTTGAAAACTTTTG+TGG - chr6_1:9222927-9222946 None:intergenic 30.0%
! CCACAAAAGTTTTCAAAAGA+TGG + chr6_1:9222924-9222943 Msa0873630:intron 30.0%
TTTAATCTACACAAATCTGC+AGG + chr6_1:9223192-9223211 Msa0873630:intron 30.0%
AATGAGAAAGAACACAAAAG+TGG - chr6_1:9223396-9223415 None:intergenic 30.0%
TCTTACAATAGACACATGTT+TGG + chr6_1:9223601-9223620 Msa0873630:intron 30.0%
! TAACGATGAATACCTTTTTC+CGG + chr6_1:9223845-9223864 Msa0873630:intron 30.0%
CACAAATTCCACATAATCAA+GGG - chr6_1:9224011-9224030 None:intergenic 30.0%
TAAAAGCAATACAAAGCCAA+AGG - chr6_1:9224106-9224125 None:intergenic 30.0%
AGTGTTGTAAAGGGAAAATT+TGG - chr6_1:9224328-9224347 None:intergenic 30.0%
TTTGGAAGTAGTGTTGTAAA+GGG - chr6_1:9224337-9224356 None:intergenic 30.0%
ATTTGGAAGTAGTGTTGTAA+AGG - chr6_1:9224338-9224357 None:intergenic 30.0%
TACAACACTACTTCCAAATT+TGG + chr6_1:9224339-9224358 Msa0873630:intron 30.0%
AAGGAAACAACAACCAAATT+TGG - chr6_1:9224355-9224374 None:intergenic 30.0%
!! TAAATCGGATTTTGAGTCAT+AGG - chr6_1:9224381-9224400 None:intergenic 30.0%
! GAAAACTTTTGAGCATATGT+TGG - chr6_1:9224507-9224526 None:intergenic 30.0%
! GCTCAAAAGTTTTCAAATGT+TGG + chr6_1:9224513-9224532 Msa0873630:intron 30.0%
AGGTATGGCAAAAGAAAAAT+TGG - chr6_1:9224609-9224628 None:intergenic 30.0%
! TGAGAGTTTTCTATAAGGTA+TGG - chr6_1:9224624-9224643 None:intergenic 30.0%
GAAAATATGAGGAATCCAAA+AGG - chr6_1:9224680-9224699 None:intergenic 30.0%
AGACACATGTTTAGTAACAT+TGG + chr6_1:9224830-9224849 Msa0873630:intron 30.0%
TAATTTATGGAGACGTCTTA+TGG + chr6_1:9224861-9224880 Msa0873630:intron 30.0%
!! TTGATTGTTTTGTGCAGAAT+AGG + chr6_1:9225204-9225223 Msa0873630:three_prime_UTR 30.0%
!! TGATTGTTTTGTGCAGAATA+GGG + chr6_1:9225205-9225224 Msa0873630:three_prime_UTR 30.0%
! TAGTACAAAACAGAGGTATA+TGG - chr6_1:9225288-9225307 None:intergenic 30.0%
ACATTCTTAGTACAAAACAG+AGG - chr6_1:9225295-9225314 None:intergenic 30.0%
ACTCTGCATAAGACAATAAT+GGG + chr6_1:9225330-9225349 Msa0873630:three_prime_UTR 30.0%
TTGCCTTTAAATACTACATG+AGG + chr6_1:9225773-9225792 Msa0873630:three_prime_UTR 30.0%
TGCCTTTAAATACTACATGA+GGG + chr6_1:9225774-9225793 Msa0873630:three_prime_UTR 30.0%
TTCCCTCATGTAGTATTTAA+AGG - chr6_1:9225779-9225798 None:intergenic 30.0%
! AGATGTTGATAGGTTCATAT+AGG + chr6_1:9225899-9225918 Msa0873630:three_prime_UTR 30.0%
ATATGTAGAGAGAGAAAGAG+AGG - chr6_1:9220503-9220522 None:intergenic 35.0%
GTTCAAAATTAGTGGTGGTA+TGG - chr6_1:9220576-9220595 None:intergenic 35.0%
GATGAGTTCAAAATTAGTGG+TGG - chr6_1:9220581-9220600 None:intergenic 35.0%
CTAATATCACGATCTGATAG+AGG - chr6_1:9220757-9220776 None:intergenic 35.0%
! AGCTTAGATCTAAAACAGTG+AGG + chr6_1:9220888-9220907 Msa0873630:intron 35.0%
! GCTTAGATCTAAAACAGTGA+GGG + chr6_1:9220889-9220908 Msa0873630:intron 35.0%
! CATTAGGTTCAATCGATTCA+AGG - chr6_1:9221070-9221089 None:intergenic 35.0%
GAATCGATTGAACCTAATGT+CGG + chr6_1:9221071-9221090 Msa0873630:intron 35.0%
AATCGATTGAACCTAATGTC+GGG + chr6_1:9221072-9221091 Msa0873630:intron 35.0%
!! TAGAGTCTGAGATTGAGTTT+TGG + chr6_1:9221118-9221137 Msa0873630:intron 35.0%
!!! AGTTTTGGAACGTCTTGTTT+TGG + chr6_1:9221133-9221152 Msa0873630:intron 35.0%
!! TTGGTAATACACTCCTCTTT+TGG + chr6_1:9221152-9221171 Msa0873630:intron 35.0%
AAATAAAAAAGGACGGGGAA+TGG + chr6_1:9221217-9221236 Msa0873630:intron 35.0%
AATAAAAAAGGACGGGGAAT+GGG + chr6_1:9221218-9221237 Msa0873630:intron 35.0%
GGAAAATCTAAGAACACGAT+AGG - chr6_1:9221589-9221608 None:intergenic 35.0%
ACTCAAAGTTAAGGGAAAGT+GGG - chr6_1:9221610-9221629 None:intergenic 35.0%
AACTCAAAGTTAAGGGAAAG+TGG - chr6_1:9221611-9221630 None:intergenic 35.0%
AAGTCACAAGTGACAAATTC+AGG + chr6_1:9221787-9221806 Msa0873630:five_prime_UTR 35.0%
AAATTCAGGAAACCCATTCA+TGG + chr6_1:9221801-9221820 Msa0873630:exon 35.0%
CATTTCATACTGTTCGTTTC+AGG - chr6_1:9221943-9221962 None:intergenic 35.0%
GGATATGCAAGTGAATAAGA+TGG + chr6_1:9221999-9222018 Msa0873630:intron 35.0%
!! ATTTAGGCTTTATTTGGGGA+AGG + chr6_1:9222074-9222093 Msa0873630:intron 35.0%
!!! ACTTTTGTTTTTTACGGGGA+AGG + chr6_1:9222121-9222140 Msa0873630:intron 35.0%
CTTTATATTCCTGACCTACA+CGG + chr6_1:9222165-9222184 Msa0873630:intron 35.0%
CAGAAAAGGCCTTAAAATGT+GGG - chr6_1:9222210-9222229 None:intergenic 35.0%
GCTAGATTGTATGTCAGATA+TGG - chr6_1:9222256-9222275 None:intergenic 35.0%
AATTCGTTGCAAACTTCAGT+TGG + chr6_1:9222623-9222642 Msa0873630:intron 35.0%
ATTCGTTGCAAACTTCAGTT+GGG + chr6_1:9222624-9222643 Msa0873630:intron 35.0%
TACAACATTGCTTCTGAATC+TGG + chr6_1:9222796-9222815 Msa0873630:intron 35.0%
! GTTTGTTACACAAGGTTTCA+TGG - chr6_1:9222875-9222894 None:intergenic 35.0%
GACTAAGAGAGTCGATTAAA+AGG - chr6_1:9222988-9223007 None:intergenic 35.0%
CTTCATCTCATAGTTTCTCA+AGG - chr6_1:9223223-9223242 None:intergenic 35.0%
CTTGAGAAACTATGAGATGA+AGG + chr6_1:9223221-9223240 Msa0873630:intron 35.0%
AGAAAGAACACAAAAGTGGA+AGG - chr6_1:9223392-9223411 None:intergenic 35.0%
!!! TTTTAGCTTGCAATGGGTTA+TGG + chr6_1:9223471-9223490 Msa0873630:intron 35.0%
! TTCACGTTCACACTTTTAGT+AGG - chr6_1:9223547-9223566 None:intergenic 35.0%
AAAAATATGCGAAGTCCAAG+AGG - chr6_1:9223582-9223601 None:intergenic 35.0%
! AGACACATGTTTGGTAACAT+TGG + chr6_1:9223610-9223629 Msa0873630:intron 35.0%
!!! ATTTTGGTTCGATTCTTGCA+TGG - chr6_1:9223767-9223786 None:intergenic 35.0%
ATGCAAGAATCGAACCAAAA+TGG + chr6_1:9223766-9223785 Msa0873630:intron 35.0%
TGCAAGAATCGAACCAAAAT+GGG + chr6_1:9223767-9223786 Msa0873630:intron 35.0%
CAGTTATGAAAGAGGAATAC+CGG - chr6_1:9223867-9223886 None:intergenic 35.0%
CTTAATCATTATGATGGCCT+TGG - chr6_1:9223919-9223938 None:intergenic 35.0%
ACGTTATTCCCTTGATTATG+TGG + chr6_1:9224000-9224019 Msa0873630:intron 35.0%
CCACAAATTCCACATAATCA+AGG - chr6_1:9224012-9224031 None:intergenic 35.0%
CCTTGATTATGTGGAATTTG+TGG + chr6_1:9224009-9224028 Msa0873630:intron 35.0%
! TTTCTTTTGATCTGGTGGTT+AGG + chr6_1:9224206-9224225 Msa0873630:intron 35.0%
!! GATTTTGAGTCATAGGTCAA+AGG - chr6_1:9224374-9224393 None:intergenic 35.0%
! GAATTCCATTGTATGCCTTT+TGG + chr6_1:9224662-9224681 Msa0873630:intron 35.0%
GACTCTGCATAAGACAATAA+TGG + chr6_1:9225329-9225348 Msa0873630:three_prime_UTR 35.0%
CAACTAAGAGCTTATCTCAT+TGG - chr6_1:9225602-9225621 None:intergenic 35.0%
!!! TTTTGGCTTGCAAAATGTGA+TGG + chr6_1:9225737-9225756 Msa0873630:three_prime_UTR 35.0%
!! AAAGGTTGGCTTTGTAGAGA+AGG - chr6_1:9220608-9220627 None:intergenic 40.0%
TTCATCTCTGTGTGTGGTTA+AGG - chr6_1:9220821-9220840 None:intergenic 40.0%
! TCAATCGATTCAAGGTGGTT+AGG - chr6_1:9221062-9221081 None:intergenic 40.0%
! TAGGTTCAATCGATTCAAGG+TGG - chr6_1:9221067-9221086 None:intergenic 40.0%
ATAAAAAAGGACGGGGAATG+GGG + chr6_1:9221219-9221238 Msa0873630:intron 40.0%
TACAGAAGGTCCATCTAGAT+GGG - chr6_1:9221858-9221877 None:intergenic 40.0%
TTACAGAAGGTCCATCTAGA+TGG - chr6_1:9221859-9221878 None:intergenic 40.0%
GAGGAAAGAGAACTTACAGA+AGG - chr6_1:9221872-9221891 None:intergenic 40.0%
GACATGGTAAGGGTTAGAAA+AGG + chr6_1:9221974-9221993 Msa0873630:intron 40.0%
TGGTAAGGGTTAGAAAAGGA+TGG + chr6_1:9221978-9221997 Msa0873630:intron 40.0%
!! GCTTTATTTGGGGAAGGTAA+GGG + chr6_1:9222080-9222099 Msa0873630:intron 40.0%
GGGAAGGTTGAACTTGATAT+GGG + chr6_1:9222137-9222156 Msa0873630:intron 40.0%
GGAAGGTTGAACTTGATATG+GGG + chr6_1:9222138-9222157 Msa0873630:intron 40.0%
AAAACAAAGAGCTACCGTGT+AGG - chr6_1:9222182-9222201 None:intergenic 40.0%
GCAGAAAAGGCCTTAAAATG+TGG - chr6_1:9222211-9222230 None:intergenic 40.0%
! GAAACTTTTGGCATGTTTGC+AGG + chr6_1:9222359-9222378 Msa0873630:intron 40.0%
!!! TCTGTTTTTTGTGGAAGAGG+TGG + chr6_1:9222561-9222580 Msa0873630:intron 40.0%
! TTTTGTGGAAGAGGTGGAAA+TGG + chr6_1:9222567-9222586 Msa0873630:intron 40.0%
TTCGTTGCAAACTTCAGTTG+GGG + chr6_1:9222625-9222644 Msa0873630:intron 40.0%
! TTGATGCATCGTTTTGCCTT+TGG + chr6_1:9222679-9222698 Msa0873630:intron 40.0%
GAGCAGAAACACAAATCCAA+AGG - chr6_1:9222698-9222717 None:intergenic 40.0%
!! AAGGGATAATTTGCTACCTC+TGG - chr6_1:9222776-9222795 None:intergenic 40.0%
! GTGAGTGTGTTTGTTACACA+AGG - chr6_1:9222883-9222902 None:intergenic 40.0%
AGAGAGTCGATTAAAAGGCA+TGG - chr6_1:9222983-9223002 None:intergenic 40.0%
GAATTCCATTGCATGCTTCT+AGG + chr6_1:9223021-9223040 Msa0873630:intron 40.0%
GAATTCCATTGTATGCCTCT+TGG + chr6_1:9223564-9223583 Msa0873630:intron 40.0%
GAAAGAGGAATACCGGAAAA+AGG - chr6_1:9223860-9223879 None:intergenic 40.0%
CTATGCAGCAGTTATGAAAG+AGG - chr6_1:9223875-9223894 None:intergenic 40.0%
! CTGCTGCATAGATCTTTTTG+TGG + chr6_1:9223884-9223903 Msa0873630:intron 40.0%
! TTTTGTGGCAGCTAAATCCA+AGG + chr6_1:9223899-9223918 Msa0873630:intron 40.0%
TCTCGCAACAGTATAAGAGA+CGG + chr6_1:9224179-9224198 Msa0873630:intron 40.0%
!! AGCTTGTTGCATGCATATGT+TGG + chr6_1:9224234-9224253 Msa0873630:intron 40.0%
TGTTAGTGTTGCAAAGTCAG+AGG + chr6_1:9224300-9224319 Msa0873630:intron 40.0%
GGCTTGCAAGTCCATTATAA+TGG - chr6_1:9224588-9224607 None:intergenic 40.0%
! GGAATCCAAAAGGCATACAA+TGG - chr6_1:9224670-9224689 None:intergenic 40.0%
TTTGCGGAATTGTCTGATGA+AGG + chr6_1:9224967-9224986 Msa0873630:CDS 40.0%
ATCACATCTGCAGATTTGTG+TGG - chr6_1:9224995-9225014 None:intergenic 40.0%
ACAAATCTGCAGATGTGATG+AGG + chr6_1:9224996-9225015 Msa0873630:CDS 40.0%
GTTCCTCCTTCAAGAATTCT+GGG + chr6_1:9225476-9225495 Msa0873630:three_prime_UTR 40.0%
TTGTCTCCCAGAATTCTTGA+AGG - chr6_1:9225485-9225504 None:intergenic 40.0%
! AATTCTGGGAGACAAAGAAG+AGG + chr6_1:9225490-9225509 Msa0873630:three_prime_UTR 40.0%
! AGAGGCATAAAGTTGCATGA+TGG + chr6_1:9225508-9225527 Msa0873630:three_prime_UTR 40.0%
ACAGAGAGTCATAGAGACGT+TGG - chr6_1:9220458-9220477 None:intergenic 45.0%
GTCCTCCATTCAAACGAACA+CGG - chr6_1:9220705-9220724 None:intergenic 45.0%
ACGATCTGATAGAGGGTTGT+CGG - chr6_1:9220749-9220768 None:intergenic 45.0%
TATTAGACGCCTAGAAGCGA+CGG + chr6_1:9220771-9220790 Msa0873630:five_prime_UTR 45.0%
AAGGTCTTAGAAGCTGTCGT+AGG - chr6_1:9220802-9220821 None:intergenic 45.0%
! GCAGTTTTCATCTCTGTGTG+TGG - chr6_1:9220827-9220846 None:intergenic 45.0%
ATGAAAACTGCAGACGACAC+CGG + chr6_1:9220836-9220855 Msa0873630:five_prime_UTR 45.0%
GAACCTAATGTCGGGATTTG+CGG + chr6_1:9221080-9221099 Msa0873630:intron 45.0%
AACCTAATGTCGGGATTTGC+GGG + chr6_1:9221081-9221100 Msa0873630:intron 45.0%
AGAGAAGAACGCAAAGCCAA+TGG - chr6_1:9221552-9221571 None:intergenic 45.0%
GTTGAGGATGTTGGCATAGT+TGG + chr6_1:9221716-9221735 Msa0873630:five_prime_UTR 45.0%
! ATAGTTGGTGCTCCAATGCA+GGG + chr6_1:9221731-9221750 Msa0873630:five_prime_UTR 45.0%
! GAGTGTACTTTTCCCTGCAT+TGG - chr6_1:9221746-9221765 None:intergenic 45.0%
AGGAAACCCATTCATGGAGT+GGG + chr6_1:9221807-9221826 Msa0873630:exon 45.0%
ACCATTTCTCCCCATCTAGA+TGG + chr6_1:9221845-9221864 Msa0873630:CDS 45.0%
TCCATCTAGATGGGGAGAAA+TGG - chr6_1:9221849-9221868 None:intergenic 45.0%
ACAGAAGGTCCATCTAGATG+GGG - chr6_1:9221857-9221876 None:intergenic 45.0%
!! GGCTTTATTTGGGGAAGGTA+AGG + chr6_1:9222079-9222098 Msa0873630:intron 45.0%
GGGGAAGGTTGAACTTGATA+TGG + chr6_1:9222136-9222155 Msa0873630:intron 45.0%
GGTTGAACTTGATATGGGGA+AGG + chr6_1:9222142-9222161 Msa0873630:intron 45.0%
TGTCTTTGTGGAAGTAGTCC+TGG + chr6_1:9222441-9222460 Msa0873630:intron 45.0%
TCGTTGCAAACTTCAGTTGG+GGG + chr6_1:9222626-9222645 Msa0873630:intron 45.0%
! TTTTGCTAGTGCAAAGCCAG+AGG + chr6_1:9222757-9222776 Msa0873630:intron 45.0%
CACAAGGTTTCATGGGAAGT+TGG - chr6_1:9222867-9222886 None:intergenic 45.0%
! CAAGTCCTAGAAGCATGCAA+TGG - chr6_1:9223029-9223048 None:intergenic 45.0%
AGCTGTCAAAGCTACTGATG+AGG + chr6_1:9223244-9223263 Msa0873630:intron 45.0%
! GAAGTCCAAGAGGCATACAA+TGG - chr6_1:9223572-9223591 None:intergenic 45.0%
!!! ACGGCTGGTTTCTTTTGATC+TGG + chr6_1:9224198-9224217 Msa0873630:intron 45.0%
!! GCTGGTTTCTTTTGATCTGG+TGG + chr6_1:9224201-9224220 Msa0873630:intron 45.0%
TTCTTGTCGACATACCTGCT+TGG + chr6_1:9224929-9224948 Msa0873630:CDS 45.0%
! AGACAATTCCGCAAAGCGTT+TGG - chr6_1:9224962-9224981 None:intergenic 45.0%
GGTTCCTCCTTCAAGAATTC+TGG + chr6_1:9225475-9225494 Msa0873630:three_prime_UTR 45.0%
TCTCCCAGAATTCTTGAAGG+AGG - chr6_1:9225482-9225501 None:intergenic 45.0%
GCTTGCAAAATGTGATGGCA+AGG + chr6_1:9225742-9225761 Msa0873630:three_prime_UTR 45.0%
CAAAATGTGATGGCAAGGCA+AGG + chr6_1:9225747-9225766 Msa0873630:three_prime_UTR 45.0%
AGAAAGAGCCTTGGAGAGAA+AGG + chr6_1:9225845-9225864 Msa0873630:three_prime_UTR 45.0%
CTGCAGATGCAGATGTTGAT+AGG + chr6_1:9225889-9225908 Msa0873630:three_prime_UTR 45.0%
!! AATTAAATGAAAAATAAAAA+AGG + chr6_1:9221206-9221225 Msa0873630:intron 5.0%
!! AATAAATGAATAAATAATAA+TGG + chr6_1:9221250-9221269 Msa0873630:intron 5.0%
!!! AAGATTTTTTTTTTAAAAAA+GGG - chr6_1:9222658-9222677 None:intergenic 5.0%
!!! TAAGATTTTTTTTTTAAAAA+AGG - chr6_1:9222659-9222678 None:intergenic 5.0%
!! AATAATAACAATAATAATAT+AGG + chr6_1:9224730-9224749 Msa0873630:intron 5.0%
!! TAATTATAAATATAATTGTT+AGG + chr6_1:9225362-9225381 Msa0873630:three_prime_UTR 5.0%
!! AATTATAAATATAATTGTTA+GGG + chr6_1:9225363-9225382 Msa0873630:three_prime_UTR 5.0%
AATGTTGAGGCGGCTGTGTT+TGG - chr6_1:9220531-9220550 None:intergenic 50.0%
AGTGGTGGTATGGCCTAAGA+AGG - chr6_1:9220566-9220585 None:intergenic 50.0%
GGTGGCTGGATAAATGAACG+CGG - chr6_1:9220673-9220692 None:intergenic 50.0%
GTTCATTTATCCAGCCACCG+TGG + chr6_1:9220674-9220693 Msa0873630:five_prime_UTR 50.0%
ATCCGCCGTGTTCGTTTGAA+TGG + chr6_1:9220697-9220716 Msa0873630:five_prime_UTR 50.0%
CTCCATTCAAACGAACACGG+CGG - chr6_1:9220702-9220721 None:intergenic 50.0%
TAGAGGGTTGTCGGTAGTAG+TGG - chr6_1:9220740-9220759 None:intergenic 50.0%
TTCCCGCAAATCCCGACATT+AGG - chr6_1:9221086-9221105 None:intergenic 50.0%
GAAGCTGTATGGGCCAAAAG+AGG - chr6_1:9221168-9221187 None:intergenic 50.0%
! CATAGTTGGTGCTCCAATGC+AGG + chr6_1:9221730-9221749 Msa0873630:five_prime_UTR 50.0%
CAGGAAACCCATTCATGGAG+TGG + chr6_1:9221806-9221825 Msa0873630:exon 50.0%
GGAAACCCATTCATGGAGTG+GGG + chr6_1:9221808-9221827 Msa0873630:exon 50.0%
TCATGCCCCACTCCATGAAT+GGG - chr6_1:9221816-9221835 None:intergenic 50.0%
ATCATGCCCCACTCCATGAA+TGG - chr6_1:9221817-9221836 None:intergenic 50.0%
AAAGAGCTACCGTGTAGGTC+AGG - chr6_1:9222177-9222196 None:intergenic 50.0%
TTTGTGGAAGTAGTCCTGGC+AGG + chr6_1:9222445-9222464 Msa0873630:intron 50.0%
CGTTGCAAACTTCAGTTGGG+GGG + chr6_1:9222627-9222646 Msa0873630:intron 50.0%
GCAACAGTATAAGAGACGGC+TGG + chr6_1:9224183-9224202 Msa0873630:intron 50.0%
GCTGCTATCCAAACGCTTTG+CGG + chr6_1:9224951-9224970 Msa0873630:CDS 50.0%
GCCTTCATACTGCTTTCTGC+TGG + chr6_1:9225449-9225468 Msa0873630:three_prime_UTR 50.0%
GCCAGCAGAAAGCAGTATGA+AGG - chr6_1:9225453-9225472 None:intergenic 50.0%
CGAAAGAGCCTTGGAGAGAA+AGG + chr6_1:9225800-9225819 Msa0873630:three_prime_UTR 50.0%
AGAGCCTTGGAGAGAAAGGA+AGG + chr6_1:9225804-9225823 Msa0873630:three_prime_UTR 50.0%
GAGCCTTGGAGAGAAAGGAA+GGG + chr6_1:9225805-9225824 Msa0873630:three_prime_UTR 50.0%
AAGCCCTTCCTTTCTCTCCA+AGG - chr6_1:9225811-9225830 None:intergenic 50.0%
TTGGAGAGAAAGGAAGGGCT+TGG + chr6_1:9225810-9225829 Msa0873630:three_prime_UTR 50.0%
GTGAGAGAGAGAAAGAGCCT+TGG + chr6_1:9225836-9225855 Msa0873630:three_prime_UTR 50.0%
AGAATTTGCAGTGCAGCGCA+GGG - chr6_1:9225871-9225890 None:intergenic 50.0%
GGTGGTATGGCCTAAGAAGG+CGG - chr6_1:9220563-9220582 None:intergenic 55.0%
AAACGAACACGGCGGATCCA+CGG - chr6_1:9220694-9220713 None:intergenic 55.0%
CGCCGTGTTCGTTTGAATGG+AGG + chr6_1:9220700-9220719 Msa0873630:five_prime_UTR 55.0%
TAGGTACCACCGTCGCTTCT+AGG - chr6_1:9220783-9220802 None:intergenic 55.0%
! TTTGGGGTTAGAACCCACGC+TGG + chr6_1:9221694-9221713 Msa0873630:five_prime_UTR 55.0%
! GTTAGAACCCACGCTGGTTG+AGG + chr6_1:9221700-9221719 Msa0873630:five_prime_UTR 55.0%
CCAACATCCTCAACCAGCGT+GGG - chr6_1:9221710-9221729 None:intergenic 55.0%
! CAGGAGAGCACGTGTCTTTG+TGG + chr6_1:9222429-9222448 Msa0873630:intron 55.0%
TGGAAGTAGTCCTGGCAGGA+AGG + chr6_1:9222449-9222468 Msa0873630:intron 55.0%
CGTTTGGATAGCAGCCAAGC+AGG - chr6_1:9224946-9224965 None:intergenic 55.0%
CATACTGCTTTCTGCTGGCG+TGG + chr6_1:9225454-9225473 Msa0873630:three_prime_UTR 55.0%
TGAGGGAAGCGAAAGAGCCT+TGG + chr6_1:9225791-9225810 Msa0873630:three_prime_UTR 55.0%
CAGAATTTGCAGTGCAGCGC+AGG - chr6_1:9225872-9225891 None:intergenic 55.0%
GTTGAGGCGGCTGTGTTTGG+TGG - chr6_1:9220528-9220547 None:intergenic 60.0%
GCCGCCTCAACATTGCCATC+CGG + chr6_1:9220537-9220556 Msa0873630:five_prime_UTR 60.0%
GCCGGATGGCAATGTTGAGG+CGG - chr6_1:9220541-9220560 None:intergenic 60.0%
GTATGGCCTAAGAAGGCGGC+CGG - chr6_1:9220559-9220578 None:intergenic 60.0%
TAGACGCCTAGAAGCGACGG+TGG + chr6_1:9220774-9220793 Msa0873630:five_prime_UTR 60.0%
! CCCACGCTGGTTGAGGATGT+TGG + chr6_1:9221707-9221726 Msa0873630:five_prime_UTR 60.0%
GCCAACATCCTCAACCAGCG+TGG - chr6_1:9221711-9221730 None:intergenic 60.0%
GGCTACTCTTCCTTCCTGCC+AGG - chr6_1:9222462-9222481 None:intergenic 60.0%
GCGGCCGGATGGCAATGTTG+AGG - chr6_1:9220544-9220563 None:intergenic 65.0%
TGCCATCCGGCCGCCTTCTT+AGG + chr6_1:9220550-9220569 Msa0873630:five_prime_UTR 65.0%
GCGCAGGGCCTTTCTCTCCA+AGG - chr6_1:9225856-9225875 None:intergenic 65.0%
GGCCTAAGAAGGCGGCCGGA+TGG - chr6_1:9220555-9220574 None:intergenic 70.0%
CGAACACGGCGGATCCACGG+TGG - chr6_1:9220691-9220710 None:intergenic 70.0%
CACGGCGGATCCACGGTGGC+TGG - chr6_1:9220687-9220706 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
chr6_1 gene 9220449 9225958 9220449 ID=Msa0873630;Name=Msa0873630
chr6_1 mRNA 9220449 9225958 9220449 ID=Msa0873630-mRNA-1;Parent=Msa0873630;Name=Msa0873630-mRNA-1;_AED=0.08;_eAED=0.08;_QI=585|0.5|1|1|0|0|3|863|75
chr6_1 exon 9220449 9220904 9220449 ID=Msa0873630-mRNA-1:exon:2809;Parent=Msa0873630-mRNA-1
chr6_1 exon 9221691 9221874 9221691 ID=Msa0873630-mRNA-1:exon:2810;Parent=Msa0873630-mRNA-1
chr6_1 exon 9224923 9225958 9224923 ID=Msa0873630-mRNA-1:exon:2811;Parent=Msa0873630-mRNA-1
chr6_1 five_prime_UTR 9220449 9220904 9220449 ID=Msa0873630-mRNA-1:five_prime_utr;Parent=Msa0873630-mRNA-1
chr6_1 five_prime_UTR 9221691 9221819 9221691 ID=Msa0873630-mRNA-1:five_prime_utr;Parent=Msa0873630-mRNA-1
chr6_1 CDS 9221820 9221874 9221820 ID=Msa0873630-mRNA-1:cds;Parent=Msa0873630-mRNA-1
chr6_1 CDS 9224923 9225095 9224923 ID=Msa0873630-mRNA-1:cds;Parent=Msa0873630-mRNA-1
chr6_1 three_prime_UTR 9225096 9225958 9225096 ID=Msa0873630-mRNA-1:three_prime_utr;Parent=Msa0873630-mRNA-1
Gene Sequence

>Msa0873630

ATGGAGTGGGGCATGATAAGAGACAACCATTTCTCCCCATCTAGATGGACCTTCTATCATATTCTTGTCGACATACCTGCTTGGCTGCTATCCAAACGCTTTGCGGAATTGTCTGATGAAGGATCCACACAAATCTGCAGATGTGATGAGGACTTGTTACATGCTTGTTTGCTGCTGCCCATAATACACATTATCATTGTAAGTAAAAAAATGAAAACAATTGTGTAG
Protein sequence

>Msa0873630

MEWGMIRDNHFSPSRWTFYHILVDIPAWLLSKRFAELSDEGSTQICRCDEDLLHACLLLPIIHIIIVSKKMKTIV*