AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0071800

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 98 sgRNAs with CRISPR-Local

Find 321 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGTTCCTCCTTCAAGAATTT+TGG 0.171282 1_2:+43977715 Msa0071800:three_prime_UTR
TTCCCTCATGTAGTATTTAA+AGG 0.173459 1_2:-43978016 None:intergenic
TTACAATGATAATGTGTATT+TGG 0.176865 1_2:-43975535 None:intergenic
TACAGTGATAATGTGTATTA+TGG 0.178827 1_2:-43977287 None:intergenic
AAGTCACAGGTGACAAATTC+AGG 0.286926 1_2:+43974025 Msa0071800:five_prime_UTR
CAGAATTTGCAGTGCAGCGC+AGG 0.294148 1_2:-43978109 None:intergenic
TTCATTTCTGTGTGTGGTTA+AGG 0.294857 1_2:-43973053 None:intergenic
TAATTATAAATATAATTGTT+AGG 0.307154 1_2:+43977602 Msa0071800:three_prime_UTR
GTTGAGGATGTTTGCATAGT+TGG 0.318206 1_2:+43973954 Msa0071800:five_prime_UTR
AACAGATCTGAACAATAAAA+AGG 0.324414 1_2:-43972858 None:intergenic
GACTCTGCATAAGACAATAA+TGG 0.355828 1_2:+43977569 Msa0071800:three_prime_UTR
ATCCGCCGTGTTCGTTTGAA+TGG 0.359236 1_2:+43972932 Msa0071800:five_prime_UTR
AAACAATTCCGCAAAGCGTT+TGG 0.366269 1_2:-43977200 None:intergenic
TAGGTACCACCGTCGCTTCT+AGG 0.379077 1_2:-43973015 None:intergenic
ACCATTTCTCCCCATCTAGA+TGG 0.390770 1_2:+43974083 Msa0071800:CDS
TTACAGAAGGTCCATCTAGA+TGG 0.393898 1_2:-43974094 None:intergenic
AATGTTGAGGCGGCTGTGTT+TGG 0.404045 1_2:-43972763 None:intergenic
TGCCATCCGGCAGCCTTCTT+AGG 0.405515 1_2:+43972785 Msa0071800:five_prime_UTR
TTGTCTCCCAAAATTCTTGA+AGG 0.413650 1_2:-43977722 None:intergenic
TAGTACAAAACAGAGGTATA+TGG 0.414342 1_2:-43977525 None:intergenic
CGAAAGAGCCTTGGAGAGAA+AGG 0.423381 1_2:+43978040 Msa0071800:three_prime_UTR
AGAGATGAGTTCAAAATTAG+TGG 0.424415 1_2:-43972816 None:intergenic
AGAAAGAGCCTTGGAGAGAA+AGG 0.426750 1_2:+43978085 Msa0071800:three_prime_UTR
ACTCTGCATAAGACAATAAT+GGG 0.428670 1_2:+43977570 Msa0071800:three_prime_UTR
CATAGTTGGTGCTCCAATGC+AGG 0.438314 1_2:+43973968 Msa0071800:five_prime_UTR
GCCTTCATACTGCTTTCTGC+TGG 0.438656 1_2:+43977689 Msa0071800:three_prime_UTR
AATTATAAATATAATTGTTA+GGG 0.440124 1_2:+43977603 Msa0071800:three_prime_UTR
ACAGTGATAATGTGTATTAT+GGG 0.445189 1_2:-43977286 None:intergenic
ATCATGCCCCAGTCCATGAA+TGG 0.447124 1_2:-43974052 None:intergenic
GCTGCTATCCAAACGCTTTG+CGG 0.447265 1_2:+43977192 Msa0071800:CDS
TCCATCTAGATGGGGAGAAA+TGG 0.448127 1_2:-43974084 None:intergenic
CTCAAGCTTGTTGCATATGT+TGG 0.452344 1_2:+43976475 Msa0071800:CDS
CAACTAAGAGCTTATCTCAT+TGG 0.455962 1_2:-43977839 None:intergenic
CTAATATCACGATCTGATAG+AGG 0.463081 1_2:-43972989 None:intergenic
TTGGAGAGAAAGGAAGGGCT+TGG 0.464845 1_2:+43978050 Msa0071800:three_prime_UTR
AAATTCAGGAAACCCATTCA+TGG 0.464931 1_2:+43974039 Msa0071800:exon
TTTGCGGAATTGTTTGATGA+AGG 0.478173 1_2:+43977208 Msa0071800:CDS
AAAGGTTGGCTTTGTAGAGA+AGG 0.479190 1_2:-43972840 None:intergenic
GTTAGAACCCACGCTGGTTG+AGG 0.491363 1_2:+43973938 Msa0071800:five_prime_UTR
AAGCCCTTCCTTTCTCTCCA+AGG 0.495149 1_2:-43978048 None:intergenic
CAGGAAACCCATTCATGGAC+TGG 0.498843 1_2:+43974044 Msa0071800:exon
GCCGCCTCAACATTGCCATC+CGG 0.503285 1_2:+43972772 Msa0071800:five_prime_UTR
AGGAAACCCATTCATGGACT+GGG 0.506394 1_2:+43974045 Msa0071800:exon
CTTCATCTCATAGTTTCTCA+AGG 0.506698 1_2:-43975460 None:intergenic
TGAGGGAAGCGAAAGAGCCT+TGG 0.511561 1_2:+43978031 Msa0071800:three_prime_UTR
GTTGAGGCGGCTGTGTTTGG+TGG 0.512688 1_2:-43972760 None:intergenic
TCATGCCCCAGTCCATGAAT+GGG 0.513202 1_2:-43974051 None:intergenic
GTTCAAAATTAGTGGTGGTA+TGG 0.514683 1_2:-43972808 None:intergenic
CGTTTGGATAGCAGCCAAGC+AGG 0.516208 1_2:-43977184 None:intergenic
CTTGAGAAACTATGAGATGA+AGG 0.518610 1_2:+43975461 Msa0071800:CDS
ACGATCTGATAGAGGGTTGT+CGG 0.521070 1_2:-43972981 None:intergenic
TACAGAAGGTCCATCTAGAT+GGG 0.521806 1_2:-43974093 None:intergenic
GCGCAGGGCCTTTCTCTCCA+AGG 0.526608 1_2:-43978093 None:intergenic
CACGGCGGATCCACGGTGGC+AGG 0.528805 1_2:-43972919 None:intergenic
TTGCCTTTAAATACTACATG+AGG 0.534140 1_2:+43978013 Msa0071800:three_prime_UTR
CGCCGTGTTCGTTTGAATGG+AGG 0.537898 1_2:+43972935 Msa0071800:five_prime_UTR
TTCTTGTCGACATACCTGCT+TGG 0.538298 1_2:+43977170 Msa0071800:CDS
AGAGCCTTGGAGAGAAAGGA+AGG 0.541262 1_2:+43978044 Msa0071800:three_prime_UTR
GTGAGAGAGAGAAAGAGCCT+TGG 0.551422 1_2:+43978076 Msa0071800:three_prime_UTR
TCTCCCAAAATTCTTGAAGG+AGG 0.552827 1_2:-43977719 None:intergenic
AGTGGTGGTATGGCCTAAGA+AGG 0.554829 1_2:-43972798 None:intergenic
GTATGGCCTAAGAAGGCTGC+CGG 0.565972 1_2:-43972791 None:intergenic
GCCAGCAGAAAGCAGTATGA+AGG 0.568670 1_2:-43977690 None:intergenic
TAGAGGGTTGTCGGTAGTAG+TGG 0.576250 1_2:-43972972 None:intergenic
AGAATTTGCAGTGCAGCGCA+GGG 0.576307 1_2:-43978108 None:intergenic
CATACTGCTTTCTGCTGGCG+TGG 0.581915 1_2:+43977694 Msa0071800:three_prime_UTR
CAAAATGTGATGGCAAGGCA+AGG 0.585482 1_2:+43977987 Msa0071800:three_prime_UTR
AGAGGCATAAAGTTGCATGA+TGG 0.590712 1_2:+43977748 Msa0071800:three_prime_UTR
AAACGAACACGGCGGATCCA+CGG 0.597311 1_2:-43972926 None:intergenic
ACAGAGAGTCATAGAGACGT+TGG 0.601431 1_2:-43972692 None:intergenic
ATGAAAACTGCAGACGACAC+CGG 0.609180 1_2:+43973071 Msa0071800:five_prime_UTR
TGTTAGTGCTGCAAAGTCAC+AGG 0.610160 1_2:+43974012 Msa0071800:five_prime_UTR
TGCCTTTAAATACTACATGA+GGG 0.610711 1_2:+43978014 Msa0071800:three_prime_UTR
GCCGGATGGCAATGTTGAGG+CGG 0.611490 1_2:-43972773 None:intergenic
GCTTGCAAAATGTGATGGCA+AGG 0.615832 1_2:+43977982 Msa0071800:three_prime_UTR
GGCCTAAGAAGGCTGCCGGA+TGG 0.619680 1_2:-43972787 None:intergenic
ATCACATCTGCAGATTTGTG+TGG 0.619954 1_2:-43977233 None:intergenic
ATAGTTGGTGCTCCAATGCA+GGG 0.620045 1_2:+43973969 Msa0071800:five_prime_UTR
TAATATCACGATCTGATAGA+GGG 0.623312 1_2:-43972988 None:intergenic
ACAAATCTGCAGATGTGATG+AGG 0.630753 1_2:+43977237 Msa0071800:CDS
GATGAGTTCAAAATTAGTGG+TGG 0.631675 1_2:-43972813 None:intergenic
GAGCCTTGGAGAGAAAGGAA+GGG 0.646139 1_2:+43978045 Msa0071800:three_prime_UTR
GTCCTCCATTCAAACGAACA+CGG 0.653128 1_2:-43972937 None:intergenic
CAAACATCCTCAACCAGCGT+GGG 0.654114 1_2:-43973945 None:intergenic
GCTGCCGGATGGCAATGTTG+AGG 0.658758 1_2:-43972776 None:intergenic
GCAAACATCCTCAACCAGCG+TGG 0.659050 1_2:-43973946 None:intergenic
AGCTGTCAAAGCTACTGATG+AGG 0.663227 1_2:+43975484 Msa0071800:CDS
AAGGTCTTAGAAGCTGTCGT+AGG 0.673848 1_2:-43973034 None:intergenic
TATTAGACGCCTAGAAGCGA+CGG 0.676167 1_2:+43973006 Msa0071800:five_prime_UTR
GGAAACCCATTCATGGACTG+GGG 0.682242 1_2:+43974046 Msa0071800:exon
ACAGAAGGTCCATCTAGATG+GGG 0.687511 1_2:-43974092 None:intergenic
TAGACGCCTAGAAGCGACGG+TGG 0.706943 1_2:+43973009 Msa0071800:five_prime_UTR
TTTGGGGTTAGAACCCACGC+TGG 0.715063 1_2:+43973932 Msa0071800:five_prime_UTR
ACATTCTTAGTACAAAACAG+AGG 0.764301 1_2:-43977532 None:intergenic
GTTCATTTATCCTGCCACCG+TGG 0.766910 1_2:+43972909 Msa0071800:five_prime_UTR
CGAACACGGCGGATCCACGG+TGG 0.771353 1_2:-43972923 None:intergenic
CTCCATTCAAACGAACACGG+CGG 0.804040 1_2:-43972934 None:intergenic
GGTGGCAGGATAAATGAACG+CGG 0.808001 1_2:-43972905 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATTAAATAAAAAATAAAAA+AGG + chr1_2:43973441-43973460 Msa0071800:intron 0.0%
!! TTAAATTTAAATTATTTAAT+TGG + chr1_2:43976681-43976700 Msa0071800:intron 0.0%
!!! ATTAATTTTATTAATTTTAT+TGG + chr1_2:43977048-43977067 Msa0071800:intron 0.0%
!! AAATAAAAAATAAAAAAGGA+CGG + chr1_2:43973445-43973464 Msa0071800:intron 10.0%
!! AGAATATATTGTTAATATTT+AGG + chr1_2:43974296-43974315 Msa0071800:intron 10.0%
!!! ATTGGTAAAATTATAATTTT+TGG + chr1_2:43975868-43975887 Msa0071800:intron 10.0%
!! GAAATAAAATGAAAAAAATT+TGG - chr1_2:43976036-43976055 None:intergenic 10.0%
!! AATAAAAAATAAAAAAGGAC+GGG + chr1_2:43973446-43973465 Msa0071800:intron 15.0%
!! ATGAATAAATAATAATGGTT+AGG + chr1_2:43973490-43973509 Msa0071800:intron 15.0%
!! TGAATAAATAATAATGGTTA+GGG + chr1_2:43973491-43973510 Msa0071800:intron 15.0%
!!! TTAATATTTAGGCTTTATTT+GGG + chr1_2:43974307-43974326 Msa0071800:intron 15.0%
!!! ATGAATACTTTTGTTTTTTA+CGG + chr1_2:43974353-43974372 Msa0071800:intron 15.0%
!! AAACATAGTTTGAAAAAAAA+GGG - chr1_2:43974516-43974535 None:intergenic 15.0%
!!! TTTTTTTTATCTGTTTTTTG+TGG + chr1_2:43974790-43974809 Msa0071800:intron 15.0%
!! TATTTCAATTGTTAAATGAA+AGG - chr1_2:43975301-43975320 None:intergenic 15.0%
!! TGAAGCAAAAATTAATAAAA+TGG + chr1_2:43975354-43975373 Msa0071800:intron 15.0%
!!! ATTTAATTTAAATATGTGTG+TGG - chr1_2:43976667-43976686 None:intergenic 15.0%
!! ATTGGTAAAATTATAATTTC+TGG + chr1_2:43977089-43977108 Msa0071800:intron 15.0%
!!! TATTATTTTTAACTTGCAAT+TGG + chr1_2:43977419-43977438 Msa0071800:three_prime_UTR 15.0%
!!! TTTTAAGTTTTGAACCTAAA+AGG + chr1_2:43973224-43973243 Msa0071800:intron 20.0%
!!! AGTATAATAACAAACCTTTT+AGG - chr1_2:43973241-43973260 None:intergenic 20.0%
!! TGTTATTATACTTGTAACAT+AGG + chr1_2:43973249-43973268 Msa0071800:intron 20.0%
!! ATAAAAAATAAAAAAGGACG+GGG + chr1_2:43973447-43973466 Msa0071800:intron 20.0%
!! ATCTAAGTTATACATGATTT+AGG + chr1_2:43973602-43973621 Msa0071800:intron 20.0%
!! AGTATGAAATGTTAACTTTA+TGG + chr1_2:43974190-43974209 Msa0071800:intron 20.0%
!!! GTTAATATTTAGGCTTTATT+TGG + chr1_2:43974306-43974325 Msa0071800:intron 20.0%
!!! TAATATTTAGGCTTTATTTG+GGG + chr1_2:43974308-43974327 Msa0071800:intron 20.0%
!!! TGAATACTTTTGTTTTTTAC+GGG + chr1_2:43974354-43974373 Msa0071800:intron 20.0%
!! CAAACATAGTTTGAAAAAAA+AGG - chr1_2:43974517-43974536 None:intergenic 20.0%
!!! TTTGTAACATTTTTTAGCTA+TGG - chr1_2:43974543-43974562 None:intergenic 20.0%
!! TAATTCATTTCCAAGTTTAA+TGG - chr1_2:43974735-43974754 None:intergenic 20.0%
!! ATTAAACTTGGAAATGAATT+AGG + chr1_2:43974734-43974753 Msa0071800:intron 20.0%
!!! TTACAATGATAATGTGTATT+TGG - chr1_2:43975538-43975557 None:intergenic 20.0%
!!! TTATTATTTTTAGCTTGCAA+TGG + chr1_2:43975704-43975723 Msa0071800:intron 20.0%
!!! TATTATTTTTAGCTTGCAAT+GGG + chr1_2:43975705-43975724 Msa0071800:intron 20.0%
!! TCTATTGTAAGAAAAATATG+CGG - chr1_2:43975833-43975852 None:intergenic 20.0%
!!! AAAAATGGGTAATGTTTTTT+CGG + chr1_2:43975913-43975932 Msa0071800:intron 20.0%
!! ATTCAATTGATGAAATGAAA+AGG - chr1_2:43976194-43976213 None:intergenic 20.0%
!! AGAAGTTTGAACAAATAAAT+CGG - chr1_2:43976637-43976656 None:intergenic 20.0%
!! AACATGATTAACCATTATAA+TGG + chr1_2:43976815-43976834 Msa0071800:intron 20.0%
!! TTATATGTAAGGAAAATATG+AGG - chr1_2:43976932-43976951 None:intergenic 20.0%
!! TCATTCAATCATTATATGTA+AGG - chr1_2:43976943-43976962 None:intergenic 20.0%
!!! GTAAAAAGAAGCATATATTT+TGG + chr1_2:43977960-43977979 Msa0071800:intron 20.0%
! AACAGATCTGAACAATAAAA+AGG - chr1_2:43972861-43972880 None:intergenic 25.0%
!!! TCACAGTTTTTAAGTCAAAA+AGG - chr1_2:43973554-43973573 None:intergenic 25.0%
!! TTAATACTATGTTTTGCCAT+TGG + chr1_2:43973769-43973788 Msa0071800:intron 25.0%
! GAAAATGAACTCAAAGTTAA+GGG - chr1_2:43973854-43973873 None:intergenic 25.0%
! AGAAAATGAACTCAAAGTTA+AGG - chr1_2:43973855-43973874 None:intergenic 25.0%
!! ATTTTCCTAAGAGTTTAAGA+AGG + chr1_2:43973888-43973907 Msa0071800:intron 25.0%
!! GAAAATATGAAGAGTATAAG+AGG - chr1_2:43974129-43974148 None:intergenic 25.0%
! AAATGTTAACTTTATGGACA+TGG + chr1_2:43974196-43974215 Msa0071800:intron 25.0%
! TTCTTACATGTAGTAGTATT+TGG - chr1_2:43974280-43974299 None:intergenic 25.0%
!!! GAATACTTTTGTTTTTTACG+GGG + chr1_2:43974355-43974374 Msa0071800:intron 25.0%
!!! TTTTTTCTTCCCACATTTTA+AGG + chr1_2:43974436-43974455 Msa0071800:intron 25.0%
! AGAAGACAAAAAGTAAGATA+AGG + chr1_2:43974633-43974652 Msa0071800:intron 25.0%
! AGATAAGGTTATAAAAGTTC+AGG + chr1_2:43974648-43974667 Msa0071800:intron 25.0%
!! CAAAACTCAAAGTATTAACA+AGG - chr1_2:43974980-43974999 None:intergenic 25.0%
!! AGAATTTGAGTTAAAGTCAA+AGG - chr1_2:43975069-43975088 None:intergenic 25.0%
!! AAGTTTTCAAAAGATGGTTA+TGG + chr1_2:43975168-43975187 Msa0071800:intron 25.0%
!! ATAAGATATTAGCTTCAACA+AGG - chr1_2:43975397-43975416 None:intergenic 25.0%
! TTGTTGAAGCTAATATCTTA+TGG + chr1_2:43975396-43975415 Msa0071800:intron 25.0%
! TACTAGGAGAGTTTATTATA+AGG - chr1_2:43975771-43975790 None:intergenic 25.0%
!!! TAATTTTTGGAGACATCTTA+TGG + chr1_2:43975881-43975900 Msa0071800:intron 25.0%
!!! TTATGGATTAGACAGAAAAA+TGG + chr1_2:43975898-43975917 Msa0071800:intron 25.0%
!!! TATGGATTAGACAGAAAAAT+GGG + chr1_2:43975899-43975918 Msa0071800:intron 25.0%
!! AAAAATTTGGATACCCATTT+TGG - chr1_2:43976023-43976042 None:intergenic 25.0%
! TATTCATCGTTATCAAAAGA+AGG - chr1_2:43976077-43976096 None:intergenic 25.0%
! AGAAAATAAACTCAAAGTGA+AGG - chr1_2:43976387-43976406 None:intergenic 25.0%
!!! AAGTTTTCAAATGTTGGTTA+TGG + chr1_2:43976760-43976779 Msa0071800:intron 25.0%
!! TACTATGAGAGTTTTCTATA+AGG - chr1_2:43976870-43976889 None:intergenic 25.0%
!! ACAGTGATAATGTGTATTAT+GGG - chr1_2:43977289-43977308 None:intergenic 25.0%
!! TACAGTGATAATGTGTATTA+TGG - chr1_2:43977290-43977309 None:intergenic 25.0%
! CAATTGTAGAGTATGAAAAA+TGG + chr1_2:43977891-43977910 Msa0071800:three_prime_UTR 25.0%
AGAGATGAGTTCAAAATTAG+TGG - chr1_2:43972819-43972838 None:intergenic 30.0%
GATCTGAACAATAAAAAGGT+TGG - chr1_2:43972857-43972876 None:intergenic 30.0%
TAATATCACGATCTGATAGA+GGG - chr1_2:43972991-43973010 None:intergenic 30.0%
!!! ATCTTTTTTCATCTATGCTC+CGG - chr1_2:43973093-43973112 None:intergenic 30.0%
!! ACTGTTTTAGATCTAAGCTT+TGG - chr1_2:43973122-43973141 None:intergenic 30.0%
GATTATGCATGTACTTTCAT+TGG + chr1_2:43973185-43973204 Msa0071800:intron 30.0%
!!! ATCTCATTTTGAAGCTGTAT+GGG - chr1_2:43973413-43973432 None:intergenic 30.0%
!!! AATCTCATTTTGAAGCTGTA+TGG - chr1_2:43973414-43973433 None:intergenic 30.0%
GAAAATCTAAGAACACGATA+GGG - chr1_2:43973824-43973843 None:intergenic 30.0%
ATCAACCTTCTTAAACTCTT+AGG - chr1_2:43973896-43973915 None:intergenic 30.0%
!! AAGGTTGATTTCTTTTGAAC+AGG + chr1_2:43973907-43973926 Msa0071800:intron 30.0%
! ATTTCTTTTGAACAGGTGTT+TGG + chr1_2:43973914-43973933 Msa0071800:intron 30.0%
! TTTCTTTTGAACAGGTGTTT+GGG + chr1_2:43973915-43973934 Msa0071800:intron 30.0%
TTAACTTTATGGACATGGTA+AGG + chr1_2:43974201-43974220 Msa0071800:intron 30.0%
TAACTTTATGGACATGGTAA+GGG + chr1_2:43974202-43974221 Msa0071800:intron 30.0%
TTACATGTAGTAGTATTTGG+TGG - chr1_2:43974277-43974296 None:intergenic 30.0%
AAATACAGCTATAGCAGAAA+AGG - chr1_2:43974462-43974481 None:intergenic 30.0%
AGACGATTTACAAATAGTCT+TGG - chr1_2:43974572-43974591 None:intergenic 30.0%
! ATCGTCTTTTGTGAAACTTT+TGG + chr1_2:43974585-43974604 Msa0071800:intron 30.0%
! GTTTAATGGCATCATTTTGA+TGG - chr1_2:43974721-43974740 None:intergenic 30.0%
CAAAATGATGCCATTAAACT+TGG + chr1_2:43974722-43974741 Msa0071800:intron 30.0%
!!! TTATCTGTTTTTTGTGGAAG+AGG + chr1_2:43974796-43974815 Msa0071800:intron 30.0%
TTCAGAAGCAATGTTGTAAA+GGG - chr1_2:43975032-43975051 None:intergenic 30.0%
ATTCAGAAGCAATGTTGTAA+AGG - chr1_2:43975033-43975052 None:intergenic 30.0%
TTTGTTACACAAGGTTTCAT+GGG - chr1_2:43975112-43975131 None:intergenic 30.0%
!! CCATCTTTTGAAAACTTTTG+TGG - chr1_2:43975165-43975184 None:intergenic 30.0%
! CCACAAAAGTTTTCAAAAGA+TGG + chr1_2:43975162-43975181 Msa0071800:intron 30.0%
TTTAATCTACACAAATCTGC+AGG + chr1_2:43975432-43975451 Msa0071800:intron 30.0%
AATGAGAAAGAACACAAAAG+TGG - chr1_2:43975636-43975655 None:intergenic 30.0%
TCTTACAATAGACACATGTT+TGG + chr1_2:43975841-43975860 Msa0071800:intron 30.0%
! TAACGATGAATACCTTTTTC+CGG + chr1_2:43976085-43976104 Msa0071800:intron 30.0%
CAGTTATGAAAAAGGAATAC+CGG - chr1_2:43976107-43976126 None:intergenic 30.0%
CACAAATTCCACATAATCAA+GGG - chr1_2:43976251-43976270 None:intergenic 30.0%
TAAAAGCAATACAAAGCCAA+AGG - chr1_2:43976351-43976370 None:intergenic 30.0%
AGTGTTGTAAAGGGAAAATT+TGG - chr1_2:43976569-43976588 None:intergenic 30.0%
TTTGGAAGTAGTGTTGTAAA+GGG - chr1_2:43976578-43976597 None:intergenic 30.0%
ATTTGGAAGTAGTGTTGTAA+AGG - chr1_2:43976579-43976598 None:intergenic 30.0%
TACAACACTACTTCCAAATT+TGG + chr1_2:43976580-43976599 Msa0071800:intron 30.0%
AAGGAAACAACAACCAAATT+TGG - chr1_2:43976596-43976615 None:intergenic 30.0%
!! TAAATCGGATTTTGAGTCAT+AGG - chr1_2:43976622-43976641 None:intergenic 30.0%
GAAAACTTATGAGCATATGT+TGG - chr1_2:43976748-43976767 None:intergenic 30.0%
! GCTCATAAGTTTTCAAATGT+TGG + chr1_2:43976754-43976773 Msa0071800:intron 30.0%
AGGTATGGCAAAAGAAAAAT+TGG - chr1_2:43976850-43976869 None:intergenic 30.0%
! TGAGAGTTTTCTATAAGGTA+TGG - chr1_2:43976865-43976884 None:intergenic 30.0%
GAAAATATGAGGAATCCAAA+AGG - chr1_2:43976921-43976940 None:intergenic 30.0%
AGACACATGTTTAGTAACAT+TGG + chr1_2:43977071-43977090 Msa0071800:intron 30.0%
!! TTGATTGTTTTGTGCAGAAT+AGG + chr1_2:43977445-43977464 Msa0071800:three_prime_UTR 30.0%
!! TGATTGTTTTGTGCAGAATA+GGG + chr1_2:43977446-43977465 Msa0071800:three_prime_UTR 30.0%
! TAGTACAAAACAGAGGTATA+TGG - chr1_2:43977528-43977547 None:intergenic 30.0%
ACATTCTTAGTACAAAACAG+AGG - chr1_2:43977535-43977554 None:intergenic 30.0%
ACTCTGCATAAGACAATAAT+GGG + chr1_2:43977570-43977589 Msa0071800:three_prime_UTR 30.0%
TTGCCTTTAAATACTACATG+AGG + chr1_2:43978013-43978032 Msa0071800:three_prime_UTR 30.0%
TGCCTTTAAATACTACATGA+GGG + chr1_2:43978014-43978033 Msa0071800:three_prime_UTR 30.0%
TTCCCTCATGTAGTATTTAA+AGG - chr1_2:43978019-43978038 None:intergenic 30.0%
GTTCAAAATTAGTGGTGGTA+TGG - chr1_2:43972811-43972830 None:intergenic 35.0%
GATGAGTTCAAAATTAGTGG+TGG - chr1_2:43972816-43972835 None:intergenic 35.0%
CTAATATCACGATCTGATAG+AGG - chr1_2:43972992-43973011 None:intergenic 35.0%
TTCATTTCTGTGTGTGGTTA+AGG - chr1_2:43973056-43973075 None:intergenic 35.0%
! AGCTTAGATCTAAAACAGTG+AGG + chr1_2:43973123-43973142 Msa0071800:intron 35.0%
! GCTTAGATCTAAAACAGTGA+GGG + chr1_2:43973124-43973143 Msa0071800:intron 35.0%
! CATTAGGTTCAATCGATTCA+AGG - chr1_2:43973305-43973324 None:intergenic 35.0%
GAATCGATTGAACCTAATGT+CGG + chr1_2:43973306-43973325 Msa0071800:intron 35.0%
AATCGATTGAACCTAATGTC+GGG + chr1_2:43973307-43973326 Msa0071800:intron 35.0%
!! TAGAGTCTGAGATTGAGTTT+TGG + chr1_2:43973353-43973372 Msa0071800:intron 35.0%
!!! AGTTTTGGAACGTCTTGTTT+TGG + chr1_2:43973368-43973387 Msa0071800:intron 35.0%
!! TTGGTAATACACTCCTCTTT+TGG + chr1_2:43973387-43973406 Msa0071800:intron 35.0%
AAATAAAAAAGGACGGGGAA+TGG + chr1_2:43973452-43973471 Msa0071800:intron 35.0%
AATAAAAAAGGACGGGGAAT+GGG + chr1_2:43973453-43973472 Msa0071800:intron 35.0%
GGAAAATCTAAGAACACGAT+AGG - chr1_2:43973825-43973844 None:intergenic 35.0%
ACTCAAAGTTAAGGGAAAGT+GGG - chr1_2:43973846-43973865 None:intergenic 35.0%
AACTCAAAGTTAAGGGAAAG+TGG - chr1_2:43973847-43973866 None:intergenic 35.0%
! TTCTTTTGAACAGGTGTTTG+GGG + chr1_2:43973916-43973935 Msa0071800:intron 35.0%
AAATTCAGGAAACCCATTCA+TGG + chr1_2:43974039-43974058 Msa0071800:exon 35.0%
CATTTCATACTGTTCGTTTC+AGG - chr1_2:43974181-43974200 None:intergenic 35.0%
GGATATGCAAGTGAATAAGA+TGG + chr1_2:43974237-43974256 Msa0071800:intron 35.0%
!! ATTTAGGCTTTATTTGGGGA+AGG + chr1_2:43974312-43974331 Msa0071800:intron 35.0%
!!! ACTTTTGTTTTTTACGGGGA+AGG + chr1_2:43974359-43974378 Msa0071800:intron 35.0%
CTTTATATTCCTGACCTACA+CGG + chr1_2:43974403-43974422 Msa0071800:intron 35.0%
CAGAAAAGGCCTTAAAATGT+GGG - chr1_2:43974448-43974467 None:intergenic 35.0%
AATTCGTTGCAAACTTCAGT+TGG + chr1_2:43974861-43974880 Msa0071800:intron 35.0%
ATTCGTTGCAAACTTCAGTT+GGG + chr1_2:43974862-43974881 Msa0071800:intron 35.0%
TACAACATTGCTTCTGAATC+TGG + chr1_2:43975034-43975053 Msa0071800:intron 35.0%
! GTTTGTTACACAAGGTTTCA+TGG - chr1_2:43975113-43975132 None:intergenic 35.0%
GACTAAGAGAGTCGATTAAA+AGG - chr1_2:43975228-43975247 None:intergenic 35.0%
CTTCATCTCATAGTTTCTCA+AGG - chr1_2:43975463-43975482 None:intergenic 35.0%
CTTGAGAAACTATGAGATGA+AGG + chr1_2:43975461-43975480 Msa0071800:CDS 35.0%
AGAAAGAACACAAAAGTGGA+AGG - chr1_2:43975632-43975651 None:intergenic 35.0%
!!! TTTTAGCTTGCAATGGGTTA+TGG + chr1_2:43975711-43975730 Msa0071800:intron 35.0%
! TTCACGTTCACACTTTTACT+AGG - chr1_2:43975787-43975806 None:intergenic 35.0%
! AGACACATGTTTGGTAACAT+TGG + chr1_2:43975850-43975869 Msa0071800:intron 35.0%
!!! ATTTTGGTTCGATTCTTGCA+TGG - chr1_2:43976007-43976026 None:intergenic 35.0%
ATGCAAGAATCGAACCAAAA+TGG + chr1_2:43976006-43976025 Msa0071800:intron 35.0%
TGCAAGAATCGAACCAAAAT+GGG + chr1_2:43976007-43976026 Msa0071800:intron 35.0%
GAAAAAGGAATACCGGAAAA+AGG - chr1_2:43976100-43976119 None:intergenic 35.0%
CTATGCAGCAGTTATGAAAA+AGG - chr1_2:43976115-43976134 None:intergenic 35.0%
CTTAATCATTATGATGCCCT+TGG - chr1_2:43976159-43976178 None:intergenic 35.0%
ACGTTATTCCCTTGATTATG+TGG + chr1_2:43976240-43976259 Msa0071800:intron 35.0%
CCACAAATTCCACATAATCA+AGG - chr1_2:43976252-43976271 None:intergenic 35.0%
CCTTGATTATGTGGAATTTG+TGG + chr1_2:43976249-43976268 Msa0071800:intron 35.0%
! TTTCTTTTGATCAGGTGGTT+AGG + chr1_2:43976451-43976470 Msa0071800:intron 35.0%
!! GATTTTGAGTCATAGGTCAA+AGG - chr1_2:43976615-43976634 None:intergenic 35.0%
! GAATTCCATTGTATGCCTTT+TGG + chr1_2:43976903-43976922 Msa0071800:intron 35.0%
! TAATTTCTGGAGACGTCTTA+TGG + chr1_2:43977102-43977121 Msa0071800:intron 35.0%
TTTGCGGAATTGTTTGATGA+AGG + chr1_2:43977208-43977227 Msa0071800:CDS 35.0%
GACTCTGCATAAGACAATAA+TGG + chr1_2:43977569-43977588 Msa0071800:three_prime_UTR 35.0%
! GTTCCTCCTTCAAGAATTTT+GGG + chr1_2:43977716-43977735 Msa0071800:three_prime_UTR 35.0%
TTGTCTCCCAAAATTCTTGA+AGG - chr1_2:43977725-43977744 None:intergenic 35.0%
!! AATTTTGGGAGACAAAGAAG+AGG + chr1_2:43977730-43977749 Msa0071800:three_prime_UTR 35.0%
CAACTAAGAGCTTATCTCAT+TGG - chr1_2:43977842-43977861 None:intergenic 35.0%
!!! TTTTGGCTTGCAAAATGTGA+TGG + chr1_2:43977977-43977996 Msa0071800:three_prime_UTR 35.0%
AGATATGTAGAGAGAGAGAG+AGG - chr1_2:43972740-43972759 None:intergenic 40.0%
!! AAAGGTTGGCTTTGTAGAGA+AGG - chr1_2:43972843-43972862 None:intergenic 40.0%
! GCAGTTTTCATTTCTGTGTG+TGG - chr1_2:43973062-43973081 None:intergenic 40.0%
! TCAATCGATTCAAGGTGGTT+AGG - chr1_2:43973297-43973316 None:intergenic 40.0%
! TAGGTTCAATCGATTCAAGG+TGG - chr1_2:43973302-43973321 None:intergenic 40.0%
ATAAAAAAGGACGGGGAATG+GGG + chr1_2:43973454-43973473 Msa0071800:intron 40.0%
GTTGAGGATGTTTGCATAGT+TGG + chr1_2:43973954-43973973 Msa0071800:five_prime_UTR 40.0%
AAGTCACAGGTGACAAATTC+AGG + chr1_2:43974025-43974044 Msa0071800:five_prime_UTR 40.0%
TACAGAAGGTCCATCTAGAT+GGG - chr1_2:43974096-43974115 None:intergenic 40.0%
TTACAGAAGGTCCATCTAGA+TGG - chr1_2:43974097-43974116 None:intergenic 40.0%
GAGGAAAGAGAACTTACAGA+AGG - chr1_2:43974110-43974129 None:intergenic 40.0%
GACATGGTAAGGGTTAGAAA+AGG + chr1_2:43974212-43974231 Msa0071800:intron 40.0%
TGGTAAGGGTTAGAAAAGGA+TGG + chr1_2:43974216-43974235 Msa0071800:intron 40.0%
!! GCTTTATTTGGGGAAGGTAA+GGG + chr1_2:43974318-43974337 Msa0071800:intron 40.0%
GGGAAGGTTGAACTTGATAT+GGG + chr1_2:43974375-43974394 Msa0071800:intron 40.0%
GGAAGGTTGAACTTGATATG+GGG + chr1_2:43974376-43974395 Msa0071800:intron 40.0%
AAAACAAAGAGCTACCGTGT+AGG - chr1_2:43974420-43974439 None:intergenic 40.0%
GCAGAAAAGGCCTTAAAATG+TGG - chr1_2:43974449-43974468 None:intergenic 40.0%
GCCATATCTGACATACAATC+TGG + chr1_2:43974490-43974509 Msa0071800:intron 40.0%
GCCAGATTGTATGTCAGATA+TGG - chr1_2:43974494-43974513 None:intergenic 40.0%
! GAAACTTTTGGCATGTTTGC+AGG + chr1_2:43974597-43974616 Msa0071800:intron 40.0%
!!! TCTGTTTTTTGTGGAAGAGG+TGG + chr1_2:43974799-43974818 Msa0071800:intron 40.0%
! TTTTGTGGAAGAGGTGGAAA+TGG + chr1_2:43974805-43974824 Msa0071800:intron 40.0%
TTCGTTGCAAACTTCAGTTG+GGG + chr1_2:43974863-43974882 Msa0071800:intron 40.0%
! TTGATGCATCGTTTTGCCTT+TGG + chr1_2:43974916-43974935 Msa0071800:intron 40.0%
GAGCAGAAACACAAATCCAA+AGG - chr1_2:43974935-43974954 None:intergenic 40.0%
!! AAGGGATAATTTGCTACCTC+TGG - chr1_2:43975014-43975033 None:intergenic 40.0%
! GTGAGTGTGTTTGTTACACA+AGG - chr1_2:43975121-43975140 None:intergenic 40.0%
AGAGAGTCGATTAAAAGGCA+TGG - chr1_2:43975223-43975242 None:intergenic 40.0%
GAATTCCATTGCATGCTTCT+AGG + chr1_2:43975261-43975280 Msa0071800:intron 40.0%
GAATTCCATTGTATGCCTCA+TGG + chr1_2:43975804-43975823 Msa0071800:intron 40.0%
AAAAATATGCGGAGTCCATG+AGG - chr1_2:43975822-43975841 None:intergenic 40.0%
! CTGCTGCATAGATCTTTTTG+TGG + chr1_2:43976124-43976143 Msa0071800:intron 40.0%
! TTTTGTGGCAGCTAAATCCA+AGG + chr1_2:43976139-43976158 Msa0071800:intron 40.0%
TTTGTGGCAGCTAAATCCAA+GGG + chr1_2:43976140-43976159 Msa0071800:intron 40.0%
ACATTGTTTGCCTTTGCCTT+TGG + chr1_2:43976332-43976351 Msa0071800:intron 40.0%
CAATACAAAGCCAAAGGCAA+AGG - chr1_2:43976345-43976364 None:intergenic 40.0%
TCTCGCAACAGTATAAGAGA+CGG + chr1_2:43976424-43976443 Msa0071800:intron 40.0%
!! CTCAAGCTTGTTGCATATGT+TGG + chr1_2:43976475-43976494 Msa0071800:CDS 40.0%
TGTTAGTGTTGCAAAGTCAG+AGG + chr1_2:43976541-43976560 Msa0071800:intron 40.0%
GGCTTGCAAGTCCATTATAA+TGG - chr1_2:43976829-43976848 None:intergenic 40.0%
! GGAATCCAAAAGGCATACAA+TGG - chr1_2:43976911-43976930 None:intergenic 40.0%
! AAACAATTCCGCAAAGCGTT+TGG - chr1_2:43977203-43977222 None:intergenic 40.0%
ATCACATCTGCAGATTTGTG+TGG - chr1_2:43977236-43977255 None:intergenic 40.0%
ACAAATCTGCAGATGTGATG+AGG + chr1_2:43977237-43977256 Msa0071800:CDS 40.0%
! GGTTCCTCCTTCAAGAATTT+TGG + chr1_2:43977715-43977734 Msa0071800:three_prime_UTR 40.0%
TCTCCCAAAATTCTTGAAGG+AGG - chr1_2:43977722-43977741 None:intergenic 40.0%
! AGAGGCATAAAGTTGCATGA+TGG + chr1_2:43977748-43977767 Msa0071800:three_prime_UTR 40.0%
ACAGAGAGTCATAGAGACGT+TGG - chr1_2:43972695-43972714 None:intergenic 45.0%
GTCCTCCATTCAAACGAACA+CGG - chr1_2:43972940-43972959 None:intergenic 45.0%
ACGATCTGATAGAGGGTTGT+CGG - chr1_2:43972984-43973003 None:intergenic 45.0%
TATTAGACGCCTAGAAGCGA+CGG + chr1_2:43973006-43973025 Msa0071800:five_prime_UTR 45.0%
AAGGTCTTAGAAGCTGTCGT+AGG - chr1_2:43973037-43973056 None:intergenic 45.0%
ATGAAAACTGCAGACGACAC+CGG + chr1_2:43973071-43973090 Msa0071800:five_prime_UTR 45.0%
GAACCTAATGTCGGGATTTG+CGG + chr1_2:43973315-43973334 Msa0071800:intron 45.0%
AACCTAATGTCGGGATTTGC+GGG + chr1_2:43973316-43973335 Msa0071800:intron 45.0%
AGAGAAGAACGCAAAGCCAA+TGG - chr1_2:43973788-43973807 None:intergenic 45.0%
! ATAGTTGGTGCTCCAATGCA+GGG + chr1_2:43973969-43973988 Msa0071800:five_prime_UTR 45.0%
! GAGTGTACTTTTCCCTGCAT+TGG - chr1_2:43973984-43974003 None:intergenic 45.0%
TGTTAGTGCTGCAAAGTCAC+AGG + chr1_2:43974012-43974031 Msa0071800:five_prime_UTR 45.0%
AGGAAACCCATTCATGGACT+GGG + chr1_2:43974045-43974064 Msa0071800:exon 45.0%
ACCATTTCTCCCCATCTAGA+TGG + chr1_2:43974083-43974102 Msa0071800:CDS 45.0%
TCCATCTAGATGGGGAGAAA+TGG - chr1_2:43974087-43974106 None:intergenic 45.0%
ACAGAAGGTCCATCTAGATG+GGG - chr1_2:43974095-43974114 None:intergenic 45.0%
!! GGCTTTATTTGGGGAAGGTA+AGG + chr1_2:43974317-43974336 Msa0071800:intron 45.0%
GGGGAAGGTTGAACTTGATA+TGG + chr1_2:43974374-43974393 Msa0071800:intron 45.0%
GGTTGAACTTGATATGGGGA+AGG + chr1_2:43974380-43974399 Msa0071800:intron 45.0%
TGTCTTTGTGGAAGTAGTCC+TGG + chr1_2:43974679-43974698 Msa0071800:intron 45.0%
TCGTTGCAAACTTCAGTTGG+GGG + chr1_2:43974864-43974883 Msa0071800:intron 45.0%
! TTTTGCTAGTGCAAAGCCAG+AGG + chr1_2:43974995-43975014 Msa0071800:intron 45.0%
! CAAGTCCTAGAAGCATGCAA+TGG - chr1_2:43975269-43975288 None:intergenic 45.0%
AGCTGTCAAAGCTACTGATG+AGG + chr1_2:43975484-43975503 Msa0071800:CDS 45.0%
!!! ACGGCTGGTTTCTTTTGATC+AGG + chr1_2:43976443-43976462 Msa0071800:intron 45.0%
!! GCTGGTTTCTTTTGATCAGG+TGG + chr1_2:43976446-43976465 Msa0071800:intron 45.0%
TTCTTGTCGACATACCTGCT+TGG + chr1_2:43977170-43977189 Msa0071800:CDS 45.0%
GCTTGCAAAATGTGATGGCA+AGG + chr1_2:43977982-43978001 Msa0071800:three_prime_UTR 45.0%
CAAAATGTGATGGCAAGGCA+AGG + chr1_2:43977987-43978006 Msa0071800:three_prime_UTR 45.0%
AGAAAGAGCCTTGGAGAGAA+AGG + chr1_2:43978085-43978104 Msa0071800:three_prime_UTR 45.0%
!! AATAAATGAATAAATAATAA+TGG + chr1_2:43973485-43973504 Msa0071800:intron 5.0%
!!! TAAGATTTTTTTTTAAAAAA+GGG - chr1_2:43974896-43974915 None:intergenic 5.0%
!!! ATAAGATTTTTTTTTAAAAA+AGG - chr1_2:43974897-43974916 None:intergenic 5.0%
!! AATAATAACAATAATAATAT+AGG + chr1_2:43976971-43976990 Msa0071800:intron 5.0%
!! TAATTATAAATATAATTGTT+AGG + chr1_2:43977602-43977621 Msa0071800:three_prime_UTR 5.0%
!! AATTATAAATATAATTGTTA+GGG + chr1_2:43977603-43977622 Msa0071800:three_prime_UTR 5.0%
AATGTTGAGGCGGCTGTGTT+TGG - chr1_2:43972766-43972785 None:intergenic 50.0%
AGTGGTGGTATGGCCTAAGA+AGG - chr1_2:43972801-43972820 None:intergenic 50.0%
GGTGGCAGGATAAATGAACG+CGG - chr1_2:43972908-43972927 None:intergenic 50.0%
GTTCATTTATCCTGCCACCG+TGG + chr1_2:43972909-43972928 Msa0071800:five_prime_UTR 50.0%
ATCCGCCGTGTTCGTTTGAA+TGG + chr1_2:43972932-43972951 Msa0071800:five_prime_UTR 50.0%
CTCCATTCAAACGAACACGG+CGG - chr1_2:43972937-43972956 None:intergenic 50.0%
TAGAGGGTTGTCGGTAGTAG+TGG - chr1_2:43972975-43972994 None:intergenic 50.0%
TTCCCGCAAATCCCGACATT+AGG - chr1_2:43973321-43973340 None:intergenic 50.0%
GAAGCTGTATGGGCCAAAAG+AGG - chr1_2:43973403-43973422 None:intergenic 50.0%
CAAACATCCTCAACCAGCGT+GGG - chr1_2:43973948-43973967 None:intergenic 50.0%
! CATAGTTGGTGCTCCAATGC+AGG + chr1_2:43973968-43973987 Msa0071800:five_prime_UTR 50.0%
CAGGAAACCCATTCATGGAC+TGG + chr1_2:43974044-43974063 Msa0071800:exon 50.0%
! GGAAACCCATTCATGGACTG+GGG + chr1_2:43974046-43974065 Msa0071800:exon 50.0%
TCATGCCCCAGTCCATGAAT+GGG - chr1_2:43974054-43974073 None:intergenic 50.0%
ATCATGCCCCAGTCCATGAA+TGG - chr1_2:43974055-43974074 None:intergenic 50.0%
AAAGAGCTACCGTGTAGGTC+AGG - chr1_2:43974415-43974434 None:intergenic 50.0%
TTTGTGGAAGTAGTCCTGGC+AGG + chr1_2:43974683-43974702 Msa0071800:intron 50.0%
CGTTGCAAACTTCAGTTGGG+GGG + chr1_2:43974865-43974884 Msa0071800:intron 50.0%
GGAGTCCATGAGGCATACAA+TGG - chr1_2:43975812-43975831 None:intergenic 50.0%
GCAACAGTATAAGAGACGGC+TGG + chr1_2:43976428-43976447 Msa0071800:intron 50.0%
GCTGCTATCCAAACGCTTTG+CGG + chr1_2:43977192-43977211 Msa0071800:CDS 50.0%
GCCTTCATACTGCTTTCTGC+TGG + chr1_2:43977689-43977708 Msa0071800:three_prime_UTR 50.0%
GCCAGCAGAAAGCAGTATGA+AGG - chr1_2:43977693-43977712 None:intergenic 50.0%
CGAAAGAGCCTTGGAGAGAA+AGG + chr1_2:43978040-43978059 Msa0071800:three_prime_UTR 50.0%
AGAGCCTTGGAGAGAAAGGA+AGG + chr1_2:43978044-43978063 Msa0071800:three_prime_UTR 50.0%
GAGCCTTGGAGAGAAAGGAA+GGG + chr1_2:43978045-43978064 Msa0071800:three_prime_UTR 50.0%
AAGCCCTTCCTTTCTCTCCA+AGG - chr1_2:43978051-43978070 None:intergenic 50.0%
TTGGAGAGAAAGGAAGGGCT+TGG + chr1_2:43978050-43978069 Msa0071800:three_prime_UTR 50.0%
GTGAGAGAGAGAAAGAGCCT+TGG + chr1_2:43978076-43978095 Msa0071800:three_prime_UTR 50.0%
AGAATTTGCAGTGCAGCGCA+GGG - chr1_2:43978111-43978130 None:intergenic 50.0%
GTATGGCCTAAGAAGGCTGC+CGG - chr1_2:43972794-43972813 None:intergenic 55.0%
AAACGAACACGGCGGATCCA+CGG - chr1_2:43972929-43972948 None:intergenic 55.0%
CGCCGTGTTCGTTTGAATGG+AGG + chr1_2:43972935-43972954 Msa0071800:five_prime_UTR 55.0%
TAGGTACCACCGTCGCTTCT+AGG - chr1_2:43973018-43973037 None:intergenic 55.0%
! TTTGGGGTTAGAACCCACGC+TGG + chr1_2:43973932-43973951 Msa0071800:five_prime_UTR 55.0%
! GTTAGAACCCACGCTGGTTG+AGG + chr1_2:43973938-43973957 Msa0071800:five_prime_UTR 55.0%
GCAAACATCCTCAACCAGCG+TGG - chr1_2:43973949-43973968 None:intergenic 55.0%
! CAGGAGAGCACGTGTCTTTG+TGG + chr1_2:43974667-43974686 Msa0071800:intron 55.0%
TGGAAGTAGTCCTGGCAGGA+AGG + chr1_2:43974687-43974706 Msa0071800:intron 55.0%
CGTTTGGATAGCAGCCAAGC+AGG - chr1_2:43977187-43977206 None:intergenic 55.0%
CATACTGCTTTCTGCTGGCG+TGG + chr1_2:43977694-43977713 Msa0071800:three_prime_UTR 55.0%
TGAGGGAAGCGAAAGAGCCT+TGG + chr1_2:43978031-43978050 Msa0071800:three_prime_UTR 55.0%
CAGAATTTGCAGTGCAGCGC+AGG - chr1_2:43978112-43978131 None:intergenic 55.0%
GTTGAGGCGGCTGTGTTTGG+TGG - chr1_2:43972763-43972782 None:intergenic 60.0%
GCCGCCTCAACATTGCCATC+CGG + chr1_2:43972772-43972791 Msa0071800:five_prime_UTR 60.0%
GCCGGATGGCAATGTTGAGG+CGG - chr1_2:43972776-43972795 None:intergenic 60.0%
GCTGCCGGATGGCAATGTTG+AGG - chr1_2:43972779-43972798 None:intergenic 60.0%
TGCCATCCGGCAGCCTTCTT+AGG + chr1_2:43972785-43972804 Msa0071800:five_prime_UTR 60.0%
TAGACGCCTAGAAGCGACGG+TGG + chr1_2:43973009-43973028 Msa0071800:five_prime_UTR 60.0%
GGCTACTCTTCCTTCCTGCC+AGG - chr1_2:43974700-43974719 None:intergenic 60.0%
GGCCTAAGAAGGCTGCCGGA+TGG - chr1_2:43972790-43972809 None:intergenic 65.0%
GCGCAGGGCCTTTCTCTCCA+AGG - chr1_2:43978096-43978115 None:intergenic 65.0%
CGAACACGGCGGATCCACGG+TGG - chr1_2:43972926-43972945 None:intergenic 70.0%
CACGGCGGATCCACGGTGGC+AGG - chr1_2:43972922-43972941 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
chr1_2 gene 43972686 43978143 43972686 ID=Msa0071800;Name=Msa0071800
chr1_2 mRNA 43972686 43978143 43972686 ID=Msa0071800-mRNA-1;Parent=Msa0071800;Name=Msa0071800-mRNA-1;_AED=0.10;_eAED=0.10;_QI=583|0.6|0.83|1|0|0|6|786|134
chr1_2 exon 43972686 43973139 43972686 ID=Msa0071800-mRNA-1:exon:13257;Parent=Msa0071800-mRNA-1
chr1_2 exon 43973929 43974112 43973929 ID=Msa0071800-mRNA-1:exon:13258;Parent=Msa0071800-mRNA-1
chr1_2 exon 43975454 43975553 43975454 ID=Msa0071800-mRNA-1:exon:13259;Parent=Msa0071800-mRNA-1
chr1_2 exon 43976465 43976541 43976465 ID=Msa0071800-mRNA-1:exon:13260;Parent=Msa0071800-mRNA-1
chr1_2 exon 43977164 43977952 43977164 ID=Msa0071800-mRNA-1:exon:13261;Parent=Msa0071800-mRNA-1
chr1_2 exon 43977974 43978143 43977974 ID=Msa0071800-mRNA-1:exon:13262;Parent=Msa0071800-mRNA-1
chr1_2 five_prime_UTR 43972686 43973139 43972686 ID=Msa0071800-mRNA-1:five_prime_utr;Parent=Msa0071800-mRNA-1
chr1_2 five_prime_UTR 43973929 43974057 43973929 ID=Msa0071800-mRNA-1:five_prime_utr;Parent=Msa0071800-mRNA-1
chr1_2 CDS 43974058 43974112 43974058 ID=Msa0071800-mRNA-1:cds;Parent=Msa0071800-mRNA-1
chr1_2 CDS 43975454 43975553 43975454 ID=Msa0071800-mRNA-1:cds;Parent=Msa0071800-mRNA-1
chr1_2 CDS 43976465 43976541 43976465 ID=Msa0071800-mRNA-1:cds;Parent=Msa0071800-mRNA-1
chr1_2 CDS 43977164 43977336 43977164 ID=Msa0071800-mRNA-1:cds;Parent=Msa0071800-mRNA-1
chr1_2 three_prime_UTR 43977337 43977952 43977337 ID=Msa0071800-mRNA-1:three_prime_utr;Parent=Msa0071800-mRNA-1
chr1_2 three_prime_UTR 43977974 43978143 43977974 ID=Msa0071800-mRNA-1:three_prime_utr;Parent=Msa0071800-mRNA-1
Gene Sequence

>Msa0071800

ATGGACTGGGGCATGATAAGAGACAACCATTTCTCCCCATCTAGATGGACCTTCTGTGACACCTTGAGAAACTATGAGATGAAGGAGCTGTCAAAGCTACTGATGAGGACTTGTTTACATGCTTGCTTGCTGCTGTCCAAATACACATTATCATTGTGGTTAGGACTCAAGCTTGTTGCATATGTTGGTATAGTTGATGCTTCAAATGAAGAAAAGCACAATTTTGAGCTTTATCATATTCTTGTCGACATACCTGCTTGGCTGCTATCCAAACGCTTTGCGGAATTGTTTGATGAAGGATCCACACAAATCTGCAGATGTGATGAGGACTTGTTACATGCTTGTTTGCTGCTGCCCATAATACACATTATCACTGTAAGTAAAAAAATGAAAACAATTGTGTAG
Protein sequence

>Msa0071800

MDWGMIRDNHFSPSRWTFCDTLRNYEMKELSKLLMRTCLHACLLLSKYTLSLWLGLKLVAYVGIVDASNEEKHNFELYHILVDIPAWLLSKRFAELFDEGSTQICRCDEDLLHACLLLPIIHIITVSKKMKTIV*