AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0875490

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0875490 MtrunA17_Chr6g0456201 96.078 1020 39 1 1 1019 1 1020 0.0 2016
Msa0875490 MtrunA17_Chr7g0260401 65.098 1020 316 9 28 1013 34 1047 0.0 1254
Msa0875490 MtrunA17_Chr8g0340261 88.967 571 46 1 448 1018 1 554 0.0 1041
Msa0875490 MtrunA17_Chr2g0298871 56.205 975 403 9 53 1018 123 1082 0.0 1036
Msa0875490 MtrunA17_Chr4g0002331 53.455 1042 421 13 20 1014 66 1090 0.0 1023
Msa0875490 MtrunA17_Chr1g0173111 45.957 1014 495 17 6 1005 37 1011 0.0 855
Msa0875490 MtrunA17_Chr8g0382071 47.744 953 455 17 70 1008 94 1017 0.0 841
Msa0875490 MtrunA17_Chr8g0340271 90.175 458 38 2 1 458 1 451 0.0 818
Msa0875490 MtrunA17_Chr4g0054021 47.758 959 464 14 57 1005 6 937 0.0 806
Msa0875490 MtrunA17_Chr5g0401211 47.758 959 458 16 63 1005 83 1014 0.0 796
Msa0875490 MtrunA17_Chr3g0134771 47.228 938 456 12 80 1005 106 1016 0.0 794
Msa0875490 MtrunA17_Chr4g0020551 46.347 876 425 14 70 929 27 873 0.0 751
Msa0875490 MtrunA17_Chr8g0355421 40.991 949 517 15 70 1005 87 1005 0.0 683
Msa0875490 MtrunA17_Chr5g0447521 33.829 875 521 15 152 1003 165 1004 1.49e-143 456
Msa0875490 MtrunA17_Chr4g0005551 30.777 991 613 19 39 1005 26 967 1.66e-138 441
Msa0875490 MtrunA17_Chr2g0334231 52.880 382 168 3 70 451 135 504 4.82e-122 383
Msa0875490 MtrunA17_Chr7g0263361 32.751 858 459 24 115 886 48 873 1.48e-107 359
Msa0875490 MtrunA17_Chr8g0346461 31.264 870 482 23 107 886 25 868 3.01e-95 325
Msa0875490 MtrunA17_Chr3g0134951 29.795 829 492 19 120 886 29 829 3.00e-85 296
Msa0875490 MtrunA17_Chr2g0334221 51.839 299 137 6 469 765 43 336 1.66e-84 277
Msa0875490 MtrunA17_Chr2g0334201 55.952 168 69 1 847 1009 1 168 1.69e-61 207
Msa0875490 MtrunA17_Chr4g0072131 24.072 727 457 21 95 817 24 659 3.10e-46 180
Msa0875490 MtrunA17_Chr4g0065481 23.715 759 464 26 72 817 1 657 6.02e-46 179
Msa0875490 MtrunA17_Chr8g0381711 25.032 779 475 22 154 901 69 769 7.27e-46 178
Msa0875490 MtrunA17_Chr2g0298031 24.585 602 371 13 219 817 141 662 5.78e-44 173
Msa0875490 MtrunA17_Chr2g0304941 22.691 758 470 25 81 825 10 664 9.39e-43 169
Msa0875490 MtrunA17_Chr1g0148031 23.549 586 368 12 233 817 150 656 1.41e-42 168
Msa0875490 MtrunA17_Chr3g0138931 22.942 741 474 18 81 817 9 656 1.58e-42 168
Msa0875490 MtrunA17_Chr6g0452721 23.934 610 379 16 219 825 138 665 2.38e-42 167
Msa0875490 MtrunA17_Chr2g0333721 23.980 613 375 16 219 825 134 661 3.64e-42 167
Msa0875490 MtrunA17_Chr4g0059961 24.013 608 381 16 219 825 140 667 7.48e-41 163
Msa0875490 MtrunA17_Chr8g0365021 23.432 606 372 14 219 817 206 726 2.81e-40 161
Msa0875490 MtrunA17_Chr1g0147981 22.207 707 449 17 121 817 58 673 9.84e-40 159
Msa0875490 MtrunA17_Chr8g0335291 23.568 611 379 17 219 825 144 670 2.74e-37 152
Msa0875490 MtrunA17_Chr7g0276551 26.180 466 285 11 386 848 42 451 5.37e-33 137
Msa0875490 MtrunA17_Chr5g0421231 78.750 80 17 0 521 600 279 358 3.48e-32 135
Msa0875490 MtrunA17_Chr4g0052521 24.486 584 327 22 244 822 465 939 2.71e-23 107
Msa0875490 MtrunA17_Chr3g0131151 23.077 689 389 22 173 780 215 843 4.47e-22 103
Msa0875490 MtrunA17_Chr2g0324791 21.338 792 461 22 212 863 98 867 2.39e-20 97.4
Msa0875490 MtrunA17_Chr2g0297051 30.151 199 106 4 624 822 806 971 1.86e-19 94.7
Msa0875490 MtrunA17_Chr8g0374391 27.957 186 102 2 637 822 32 185 2.46e-18 85.5
Msa0875490 MtrunA17_Chr8g0374331 27.957 186 102 2 637 822 39 192 2.82e-18 85.5
Msa0875490 MtrunA17_Chr5g0397621 31.646 158 76 3 642 799 695 820 3.60e-16 84.0
Msa0875490 MtrunA17_Chr8g0339181 29.208 202 104 4 640 840 759 922 8.49e-16 82.8
Msa0875490 MtrunA17_Chr5g0415271 21.133 847 448 34 185 831 92 918 1.35e-14 79.0
Msa0875490 MtrunA17_Chr8g0363911 21.818 550 274 20 421 831 406 938 7.32e-13 73.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0875490 AT3G22910.1 66.798 1018 308 12 12 1018 17 1015 0.0 1298
Msa0875490 AT3G63380.1 65.541 1007 312 10 27 1014 25 1015 0.0 1273
Msa0875490 AT4G29900.1 53.721 1048 442 10 6 1018 23 1062 0.0 1073
Msa0875490 AT4G29900.2 53.721 1048 442 10 6 1018 23 1062 0.0 1073
Msa0875490 AT5G57110.1 56.075 963 399 8 70 1018 114 1066 0.0 1052
Msa0875490 AT5G57110.3 56.075 963 399 8 70 1018 114 1066 0.0 1052
Msa0875490 AT5G57110.2 56.075 963 399 8 70 1018 114 1066 0.0 1052
Msa0875490 AT3G21180.1 55.474 959 408 10 66 1014 124 1073 0.0 1015
Msa0875490 AT3G57330.2 46.949 967 476 12 57 1016 25 961 0.0 864
Msa0875490 AT3G57330.1 46.949 967 476 12 57 1016 80 1016 0.0 864
Msa0875490 AT2G41560.1 44.282 1023 518 16 6 1016 37 1019 0.0 840
Msa0875490 AT2G41560.2 46.048 949 468 12 80 1016 1 917 0.0 826
Msa0875490 AT2G41560.3 46.048 949 468 12 80 1016 1 917 0.0 826
Msa0875490 AT2G41560.4 46.048 949 468 12 80 1016 1 917 0.0 826
Msa0875490 AT1G27770.4 46.891 949 464 15 70 1005 96 1017 0.0 801
Msa0875490 AT1G27770.1 46.891 949 464 15 70 1005 96 1017 0.0 801
Msa0875490 AT1G27770.3 46.786 949 465 14 70 1005 33 954 0.0 800
Msa0875490 AT4G37640.1 46.826 961 473 15 57 1005 80 1014 0.0 782
Msa0875490 AT2G22950.1 45.783 996 498 15 27 1005 45 1015 0.0 780
Msa0875490 AT5G53010.1 36.278 951 522 18 70 993 140 1033 6.56e-174 536
Msa0875490 AT5G53010.2 34.545 715 431 13 18 713 70 766 9.62e-121 388
Msa0875490 AT1G27770.2 41.577 558 303 10 70 620 96 637 5.89e-117 383
Msa0875490 AT1G27770.2 56.634 309 129 2 702 1005 635 943 1.52e-107 357
Msa0875490 AT1G07810.1 32.902 851 475 24 107 886 43 868 3.13e-107 359
Msa0875490 AT1G07670.2 33.054 835 468 23 123 886 54 868 3.32e-107 359
Msa0875490 AT1G07670.1 33.054 835 468 23 123 886 54 868 3.32e-107 359
Msa0875490 AT4G00900.2 33.100 858 466 25 95 869 14 846 5.03e-102 345
Msa0875490 AT4G00900.1 33.100 858 466 25 95 869 14 846 5.03e-102 345
Msa0875490 AT1G10130.1 28.557 977 564 25 123 1003 32 970 7.17e-88 304
Msa0875490 AT2G24520.3 24.618 589 358 13 233 817 130 636 9.17e-45 176
Msa0875490 AT2G24520.1 24.618 589 358 13 233 817 130 636 9.17e-45 176
Msa0875490 AT2G24520.2 24.618 589 358 13 233 817 193 699 9.79e-45 176
Msa0875490 AT3G42640.1 23.653 761 463 26 79 825 8 664 9.36e-44 172
Msa0875490 AT3G60330.4 24.390 615 365 19 220 825 138 661 2.68e-43 171
Msa0875490 AT3G60330.3 24.390 615 365 19 220 825 138 661 2.68e-43 171
Msa0875490 AT3G60330.2 24.228 615 366 19 220 825 138 661 5.74e-43 170
Msa0875490 AT3G60330.1 24.228 615 366 19 220 825 138 661 5.74e-43 170
Msa0875490 AT1G80660.2 24.098 610 378 16 219 825 10 537 2.78e-41 164
Msa0875490 AT1G80660.3 24.098 610 378 16 219 825 139 666 3.47e-41 164
Msa0875490 AT1G80660.1 23.934 610 379 15 219 825 139 666 3.58e-41 164
Msa0875490 AT1G80660.4 24.098 610 378 16 219 825 139 666 4.05e-41 164
Msa0875490 AT3G47950.1 23.404 611 381 15 219 825 142 669 8.49e-41 163
Msa0875490 AT3G47950.2 23.404 611 381 15 219 825 142 669 8.49e-41 163
Msa0875490 AT2G07560.1 22.888 734 467 23 123 848 44 686 1.25e-40 162
Msa0875490 AT5G62670.1 23.481 609 383 14 219 825 138 665 3.00e-40 161
Msa0875490 AT1G17260.1 25.213 587 356 15 233 817 156 661 4.69e-40 161
Msa0875490 AT4G30190.1 23.270 636 397 15 219 848 134 684 6.16e-40 160
Msa0875490 AT2G18960.3 23.428 636 396 16 219 848 70 620 2.99e-39 158
Msa0875490 AT2G18960.2 23.428 636 396 16 219 848 70 620 2.99e-39 158
Msa0875490 AT2G18960.1 23.428 636 396 16 219 848 134 684 3.18e-39 158
Msa0875490 AT5G57350.4 22.772 606 376 14 219 817 135 655 6.44e-39 157
Msa0875490 AT5G57350.2 22.772 606 376 14 219 817 135 655 6.44e-39 157
Msa0875490 AT5G57350.1 22.772 606 376 14 219 817 135 655 6.44e-39 157
Msa0875490 AT4G30190.2 22.455 668 396 18 219 848 134 717 1.62e-36 150
Msa0875490 AT2G24520.4 23.678 435 275 8 386 817 13 393 6.54e-30 127
Msa0875490 AT5G57350.3 23.341 437 274 10 386 817 13 393 3.49e-28 122
Msa0875490 AT5G23630.1 23.100 671 384 21 173 767 215 829 3.90e-23 107
Msa0875490 AT1G63440.1 30.918 207 108 5 618 822 764 937 1.28e-19 95.5
Msa0875490 AT5G44790.1 31.156 199 104 4 624 822 783 948 3.52e-18 90.9
Msa0875490 AT5G44240.1 20.781 794 463 22 212 863 130 899 2.62e-17 88.2
Msa0875490 AT5G44240.2 20.781 794 463 22 212 863 98 867 2.83e-17 88.2
Msa0875490 AT4G11730.1 21.598 338 223 11 123 455 45 345 1.66e-15 82.0
Msa0875490 AT4G30110.1 27.619 210 112 5 639 848 510 679 2.95e-14 78.2
Msa0875490 AT4G30110.2 27.619 210 112 5 639 848 510 679 2.95e-14 78.2
Msa0875490 AT2G19110.2 26.383 235 131 6 640 874 521 713 9.86e-13 73.2
Msa0875490 AT2G19110.3 26.383 235 131 6 640 874 521 713 9.86e-13 73.2
Msa0875490 AT2G19110.1 26.383 235 131 6 640 874 521 713 9.86e-13 73.2
Msa0875490 AT1G59820.1 21.996 541 270 18 421 824 393 918 1.82e-11 68.9

Find 151 sgRNAs with CRISPR-Local

Find 202 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TAACAGCAGTTCAATTATTA+TGG 0.156185 6_1:-12168105 Msa0875490:CDS
TCATGAAAATCTATTGTTCT+AGG 0.192582 6_1:-12170762 Msa0875490:CDS
AAAAGTGATGATCATGATTT+TGG 0.223820 6_1:-12170532 Msa0875490:CDS
TGAGTTTAATGCAAGGAAAT+TGG 0.225227 6_1:-12167822 Msa0875490:CDS
ATTATGGGTGAATTTGATTA+TGG 0.241738 6_1:-12168089 Msa0875490:CDS
AATAATTGAACTGCTGTTAA+TGG 0.244697 6_1:+12168109 None:intergenic
AAAACCTACTAAGGAATTAA+TGG 0.259126 6_1:-12168035 Msa0875490:CDS
AATACTATCTTGGGCTGTTT+TGG 0.272622 6_1:-12169194 Msa0875490:CDS
GTTAGGACTTGTCGGTATTA+AGG 0.283674 6_1:-12168810 Msa0875490:CDS
ACTCTCTGCATGTGAGACTA+TGG 0.284040 6_1:-12169588 Msa0875490:CDS
TCCATTTGACAAACTTCTAA+TGG 0.296674 6_1:-12168428 Msa0875490:CDS
TTTGGAATTGAAAATGGATA+TGG 0.303373 6_1:-12169176 Msa0875490:CDS
GAGTTAACAATATTACTATT+TGG 0.303748 6_1:+12167936 None:intergenic
TCCCATTGAAAGACCGATAT+CGG 0.305491 6_1:+12168327 None:intergenic
GAGAATGATTTAACATTGTT+AGG 0.306643 6_1:-12168827 Msa0875490:CDS
CAATGACATTCAAATTGATT+TGG 0.308945 6_1:-12170227 Msa0875490:CDS
AGATGAAGGTGACGAAGTTT+TGG 0.311024 6_1:-12169381 Msa0875490:CDS
TCGAAGTGGTCGTCGGTTAA+AGG 0.314231 6_1:-12170203 Msa0875490:CDS
CTTAAAACCAACATTGAGTT+TGG 0.314281 6_1:-12170559 Msa0875490:CDS
GTTCAATGCTTAAAACAAAA+AGG 0.320230 6_1:-12168406 Msa0875490:CDS
GTTATCAGTCTTTGTGTTCC+CGG 0.323015 6_1:+12169796 None:intergenic
TGGATTATTTGTATTGGTTT+TGG 0.330074 6_1:-12167662 Msa0875490:CDS
CACATAATGTTAGTTATAAG+AGG 0.361954 6_1:+12167986 None:intergenic
CTGGTACAGAAAGGTTGAAT+TGG 0.367852 6_1:-12167691 Msa0875490:CDS
TTATCCATTAATTCCTTAGT+AGG 0.369250 6_1:+12168031 None:intergenic
GGCCATGTAGTTGCTGTAAC+AGG 0.373182 6_1:-12168385 Msa0875490:CDS
TCCTCGTTGTTCTATTGATT+CGG 0.377265 6_1:-12169826 Msa0875490:CDS
GCTACACTTTCACTTGGCTT+TGG 0.378331 6_1:-12170385 Msa0875490:CDS
AAAGGTTGAATTGGAGAGAA+TGG 0.383579 6_1:-12167682 Msa0875490:CDS
GCTGATGGATTGTTTGTAGA+TGG 0.387434 6_1:-12170118 Msa0875490:CDS
AACAGCAGTTCAATTATTAT+GGG 0.388612 6_1:-12168104 Msa0875490:CDS
AATTTGATTATGGATACATT+AGG 0.389466 6_1:-12168079 Msa0875490:CDS
GTGAATGTCAAAATGATTAC+AGG 0.392744 6_1:-12168734 Msa0875490:intron
GGTGCTGTTTCTTGGCCAAT+TGG 0.393140 6_1:-12167641 Msa0875490:CDS
GATGTTGTTTGTTTGAAGAT+TGG 0.403237 6_1:-12170154 Msa0875490:CDS
GTATCATTTGTGTCCTGGTT+AGG 0.407713 6_1:+12168538 None:intergenic
GATGTGATGAATGCAATTAT+TGG 0.410036 6_1:-12169734 Msa0875490:CDS
GCAATTAGGAAACAAGTGTT+TGG 0.412156 6_1:-12170502 Msa0875490:CDS
AGAGGCTTTGTTCTACCAAC+TGG 0.413768 6_1:+12168004 None:intergenic
ATCGATCGGAAAAGTTGGTT+TGG 0.416711 6_1:-12169864 Msa0875490:CDS
ACCATTAGAAGTTTGTCAAA+TGG 0.418812 6_1:+12168427 None:intergenic
TCGAGATACTATGATGGTTA+TGG 0.422095 6_1:-12169007 Msa0875490:CDS
AGAGAATGGATTATTTGTAT+TGG 0.428342 6_1:-12167668 Msa0875490:CDS
CAAAATCATGGTGGAGTTGA+AGG 0.433331 6_1:-12170595 Msa0875490:CDS
CATGAAAATCTATTGTTCTA+GGG 0.434432 6_1:-12170761 Msa0875490:CDS
AGTGTCAATGTCACAGCTAA+TGG 0.439120 6_1:+12169659 None:intergenic
TATGAGAGTTTCTTGATCAA+TGG 0.439612 6_1:+12170651 None:intergenic
GTTCTTCAATTGATCAAAGA+AGG 0.439661 6_1:-12169307 Msa0875490:CDS
TGGTCTAGAGCCATTGGAAA+AGG 0.442604 6_1:-12169356 Msa0875490:CDS
TCAATATTTGATATTGTTGT+TGG 0.451599 6_1:-12170178 Msa0875490:CDS
ATTAAGGATCCGTGTCGTCC+AGG 0.453882 6_1:-12168794 Msa0875490:CDS
CGAAAGCATTATTCAAGGTA+TGG 0.454195 6_1:-12168945 Msa0875490:CDS
AACTTAACAACAAAACCAAT+TGG 0.455892 6_1:+12167626 None:intergenic
AGCCGATATCGGTCTTTCAA+TGG 0.458474 6_1:-12168329 Msa0875490:CDS
GTTGATGAATCGAGCATGAC+AGG 0.461070 6_1:-12170082 Msa0875490:CDS
AAATCAACCACGGTGAAAGA+TGG 0.462754 6_1:+12170694 None:intergenic
TCCACCGCTGTCTTCACCCC+TGG 0.463263 6_1:+12168776 None:intergenic
ACTATTTGCACCGATAAAAC+AGG 0.463570 6_1:-12169554 Msa0875490:intron
TTAAGGATCCGTGTCGTCCA+GGG 0.469226 6_1:-12168793 Msa0875490:CDS
TTCGTCTGCGACTTCTGTAT+AGG 0.471663 6_1:+12168892 None:intergenic
TATGGATACATTAGGTGCAT+TGG 0.476382 6_1:-12168071 Msa0875490:CDS
TTGGCTTGGTCTAGAGCCAT+TGG 0.476465 6_1:-12169362 Msa0875490:CDS
GTTTGTGCTACACTTTCACT+TGG 0.479286 6_1:-12170391 Msa0875490:CDS
TTCGTAGCCGCGGTTTCAGC+CGG 0.480048 6_1:-12168139 Msa0875490:CDS
GGTCTTTCAATGGGAATTCA+AGG 0.480265 6_1:-12168319 Msa0875490:CDS
TTAACATTGTTAGGACTTGT+CGG 0.481258 6_1:-12168818 Msa0875490:CDS
GGTGTTCACAAATCGAAATC+AGG 0.481696 6_1:-12169262 Msa0875490:CDS
CTATTGATTCGGTATTTCAC+CGG 0.482104 6_1:-12169815 Msa0875490:CDS
TTGATCAATTGAAGAACAGA+TGG 0.483421 6_1:+12169313 None:intergenic
GCCGATATCGGTCTTTCAAT+GGG 0.484090 6_1:-12168328 Msa0875490:CDS
GGAGTTGCTCTCAATACAAC+TGG 0.484303 6_1:-12169286 Msa0875490:CDS
CCACCGTATCATTTGTGTCC+TGG 0.485823 6_1:+12168533 None:intergenic
TCACAAATCGAAATCAGGTT+CGG 0.498715 6_1:-12169257 Msa0875490:CDS
TTGTTAACTCTTCAATTCAA+AGG 0.499732 6_1:-12167923 Msa0875490:CDS
AGAAATGGTTTATCTGAGAC+AGG 0.500250 6_1:+12167599 None:intergenic
ACATCATCGATCGGAAAAGT+TGG 0.506780 6_1:-12169869 Msa0875490:CDS
AAATTCGAAAGCATTATTCA+AGG 0.506879 6_1:-12168950 Msa0875490:CDS
ATCGACACACTTCAAAATCA+TGG 0.514173 6_1:-12170607 Msa0875490:CDS
TGCTGTTAATGGTACTTCAC+CGG 0.516236 6_1:+12168120 None:intergenic
ATCAAAGAAGGTTGGTATGA+TGG 0.518871 6_1:-12170346 Msa0875490:CDS
AAGAAACACCTTTGCAAACA+AGG 0.519339 6_1:-12169904 Msa0875490:CDS
TTTGACACCAAACTCAATGT+TGG 0.521308 6_1:+12170552 None:intergenic
GCATTGAAAGAAGCCGATAT+CGG 0.523732 6_1:-12168340 Msa0875490:CDS
ATCACACACACAACAAAAGA+TGG 0.526243 6_1:-12170795 Msa0875490:CDS
AGAAGTTTGCTGGTACAGAA+AGG 0.529712 6_1:-12167700 Msa0875490:CDS
CGTTGTCGTTGCAATTCCTG+AGG 0.529937 6_1:-12169687 Msa0875490:CDS
CTCTTATAACTAACATTATG+TGG 0.531696 6_1:-12167985 Msa0875490:CDS
ATATCGGCTTCTTTCAATGC+CGG 0.532373 6_1:+12168343 None:intergenic
AAAGTGTAGCACAAACCAAA+AGG 0.534473 6_1:+12170398 None:intergenic
ACAAATGATACGGTGGTTGA+AGG 0.536616 6_1:-12168526 Msa0875490:CDS
AACTCAAAGAAGAAAAGAAG+TGG 0.537966 6_1:-12169109 Msa0875490:CDS
AACTCTTCAATTCAAAGGTG+AGG 0.539506 6_1:-12167918 Msa0875490:CDS
CTCTCTGCATGTGAGACTAT+GGG 0.539612 6_1:-12169587 Msa0875490:CDS
GTAGTTGCTGTAACAGGAGA+TGG 0.541746 6_1:-12168379 Msa0875490:CDS
ACAGCTAATGGCAAACCCTC+AGG 0.545616 6_1:+12169671 None:intergenic
TTATTCAACCTTGTTTGCAA+AGG 0.545979 6_1:+12169896 None:intergenic
CAAATTGATTTGGTTCGAAG+TGG 0.549306 6_1:-12170217 Msa0875490:CDS
ATTTGGTTCGAAGTGGTCGT+CGG 0.551230 6_1:-12170210 Msa0875490:CDS
GAAGATTGGTGATCAAGTAC+CGG 0.553519 6_1:-12170140 Msa0875490:CDS
CGGTCGGTATGAACACGACA+TGG 0.554551 6_1:-12169964 Msa0875490:CDS
GGGAACACAAAGACTGATAA+CGG 0.556116 6_1:-12169794 Msa0875490:CDS
AACATGGAATCAAAGAAGGT+TGG 0.557290 6_1:-12170354 Msa0875490:CDS
AAGCAACATGGAATCAAAGA+AGG 0.557387 6_1:-12170358 Msa0875490:CDS
ACCACGGTGAAAGATGGAAT+AGG 0.558812 6_1:+12170700 None:intergenic
CTCCTGTTACAGCAACTACA+TGG 0.559264 6_1:+12168383 None:intergenic
GGTGATCAAGTACCGGCTGA+TGG 0.561728 6_1:-12170133 Msa0875490:CDS
TTATTCAATGAAGAAAATGA+TGG 0.562067 6_1:-12169633 Msa0875490:CDS
TTGGAAAGGAGCAGCAGAGA+TGG 0.565912 6_1:-12169044 Msa0875490:CDS
GGTCTAGAGCCATTGGAAAA+GGG 0.568153 6_1:-12169355 Msa0875490:CDS
AAAACTATTGCACATTGGAA+AGG 0.568293 6_1:-12169058 Msa0875490:CDS
ATTAGTGCTTCAAGTTGTGA+TGG 0.571604 6_1:-12167735 Msa0875490:CDS
GTGGAAGCTTGCCAACATGC+CGG 0.573699 6_1:-12168758 Msa0875490:CDS
AGATGGAACAAATGATGCAC+CGG 0.583689 6_1:-12168362 Msa0875490:CDS
ATTTCAACTAACAGTGAATG+TGG 0.583772 6_1:-12168179 Msa0875490:CDS
ACTCACTTTGAATCAGATGA+AGG 0.584042 6_1:-12169395 Msa0875490:CDS
TACTTCACCGGCTGAAACCG+CGG 0.586833 6_1:+12168132 None:intergenic
ACAACAAAACTATTGCACAT+TGG 0.588164 6_1:-12169063 Msa0875490:CDS
TGACATTCACACCGGCATGT+TGG 0.590504 6_1:+12168747 None:intergenic
GGTCGGTATGAACACGACAT+GGG 0.591420 6_1:-12169963 Msa0875490:CDS
GTTGTCGTTGCAATTCCTGA+GGG 0.592973 6_1:-12169686 Msa0875490:CDS
TCGGGGACAAAAGTTGTCGA+TGG 0.594676 6_1:-12170010 Msa0875490:CDS
TAACCAGGACACAAATGATA+CGG 0.599545 6_1:-12168536 Msa0875490:CDS
TGGAATACTTCAACCTAACC+AGG 0.600029 6_1:-12168551 Msa0875490:CDS
AAAATGCTCGTTACATCGGT+CGG 0.607492 6_1:-12169980 Msa0875490:CDS
TATTGATTCGGTATTTCACC+GGG 0.614725 6_1:-12169814 Msa0875490:CDS
TGAAGGAGACAACACCAAGA+TGG 0.615907 6_1:-12168858 Msa0875490:CDS
TCTACAAACAATCCATCAGC+CGG 0.619777 6_1:+12170121 None:intergenic
AATAAGCTAACATCATCGAT+CGG 0.622025 6_1:-12169878 Msa0875490:CDS
ATGTGTTCGAGATACTATGA+TGG 0.626225 6_1:-12169013 Msa0875490:CDS
TGTTATCAATTTCGTAGCCG+CGG 0.628690 6_1:-12168149 Msa0875490:CDS
TGTTTAATGAGTTTAATGCA+AGG 0.630387 6_1:-12167829 Msa0875490:CDS
GGCTTTGGTATCAAGCAACA+TGG 0.632329 6_1:-12170370 Msa0875490:CDS
TAAGGATCCGTGTCGTCCAG+GGG 0.635753 6_1:-12168792 Msa0875490:CDS
AAAGCTATAGCATTTGAATG+TGG 0.637772 6_1:-12168571 Msa0875490:CDS
AACGGAGTTAAAGAGTTCAA+CGG 0.639651 6_1:-12169776 Msa0875490:CDS
AAAGAAGGTTGGTATGATGG+TGG 0.658285 6_1:-12170343 Msa0875490:CDS
ACCTATTCCATCTTTCACCG+TGG 0.659343 6_1:-12170701 Msa0875490:CDS
TCGTCCAGGGGTGAAGACAG+CGG 0.661134 6_1:-12168780 Msa0875490:CDS
TTATAACTAACATTATGTGG+AGG 0.663994 6_1:-12167982 Msa0875490:CDS
TCCAGGGGTGAAGACAGCGG+TGG 0.664981 6_1:-12168777 Msa0875490:CDS
GTCGGTATGAACACGACATG+GGG 0.670308 6_1:-12169962 Msa0875490:CDS
AAGCATTATTCAAGGTATGG+CGG 0.676719 6_1:-12168942 Msa0875490:CDS
AATGATGGCTGATCAAGCAA+TGG 0.680846 6_1:-12169618 Msa0875490:CDS
AGGAGACAACACCAAGATGG+TGG 0.681205 6_1:-12168855 Msa0875490:CDS
GTTGCTCTCAATACAACTGG+TGG 0.691153 6_1:-12169283 Msa0875490:CDS
TGATCAATGGTAAAAGAGTG+TGG 0.699257 6_1:+12170664 None:intergenic
CCAGGACACAAATGATACGG+TGG 0.701493 6_1:-12168533 Msa0875490:CDS
GACACACTTCAAAATCATGG+TGG 0.722727 6_1:-12170604 Msa0875490:CDS
AAATAACGATGAAAACAGCG+AGG 0.747712 6_1:+12170311 None:intergenic
TGGTGAATTGAAATCAACCA+CGG 0.764909 6_1:+12170684 None:intergenic
ACCGAATCAATAGAACAACG+AGG 0.824998 6_1:+12169825 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTAAAGAATCAATATTTTT+CGG + chr6_1:12168910-12168929 None:intergenic 10.0%
!!! AAATGAATAAAACTTTTAGA+AGG + chr6_1:12167979-12167998 None:intergenic 15.0%
!!! TTTGATATTTGATTTGTAAT+AGG - chr6_1:12169012-12169031 Msa0875490:CDS 15.0%
!! ATACTAAAAAAATCAAGAAA+TGG + chr6_1:12170852-12170871 None:intergenic 15.0%
!!! TGTAACAATTTTAATCCTTT+TGG - chr6_1:12168020-12168039 Msa0875490:CDS 20.0%
!! TCAATATTTGATATTGTTGT+TGG - chr6_1:12168255-12168274 Msa0875490:CDS 20.0%
!! TTATTCAATGAAGAAAATGA+TGG - chr6_1:12168800-12168819 Msa0875490:CDS 20.0%
!! TTAAGAAAAAAGTTGTAACA+AGG - chr6_1:12168979-12168998 Msa0875490:CDS 20.0%
!! ATACTTGTATGTATAAATAG+AGG + chr6_1:12169782-12169801 None:intergenic 20.0%
!! ACAAGTATATATGAAAATGA+TGG - chr6_1:12169794-12169813 Msa0875490:CDS 20.0%
!! ACTTTATCTCTGATTATAAT+AGG - chr6_1:12169820-12169839 Msa0875490:CDS 20.0%
!!! TATAGTAACAGTTTTAAACT+GGG - chr6_1:12170194-12170213 Msa0875490:CDS 20.0%
!! AATTTGATTATGGATACATT+AGG - chr6_1:12170354-12170373 Msa0875490:CDS 20.0%
!! GAGTTAACAATATTACTATT+TGG + chr6_1:12170500-12170519 None:intergenic 20.0%
!!! ATTTAGAAGCAAATTGTTTT+TGG - chr6_1:12170659-12170678 Msa0875490:CDS 20.0%
!!! TTTAGAAGCAAATTGTTTTT+GGG - chr6_1:12170660-12170679 Msa0875490:CDS 20.0%
!!! AAATTGTTTTTGGGAATTAT+TGG - chr6_1:12170669-12170688 Msa0875490:CDS 20.0%
! TCATGAAAATCTATTGTTCT+AGG - chr6_1:12167671-12167690 Msa0875490:CDS 25.0%
! CATGAAAATCTATTGTTCTA+GGG - chr6_1:12167672-12167691 Msa0875490:CDS 25.0%
!! AAAAGTGATGATCATGATTT+TGG - chr6_1:12167901-12167920 Msa0875490:CDS 25.0%
!!! TGAATAAAACTTTTAGAAGG+TGG + chr6_1:12167976-12167995 None:intergenic 25.0%
!!! TTTTGTTGTTGAAGCTTTTA+AGG - chr6_1:12167996-12168015 Msa0875490:CDS 25.0%
! CAATGACATTCAAATTGATT+TGG - chr6_1:12168206-12168225 Msa0875490:CDS 25.0%
!!! TTTTCATCCTTTTTTGCTTT+CGG - chr6_1:12168404-12168423 Msa0875490:CDS 25.0%
! AGAAAAAGCAATACTATCTT+GGG - chr6_1:12169230-12169249 Msa0875490:CDS 25.0%
!! TTTGGAATTGAAAATGGATA+TGG - chr6_1:12169257-12169276 Msa0875490:CDS 25.0%
!!! AAATTCGAAAGCATTATTCA+AGG - chr6_1:12169483-12169502 Msa0875490:intron 25.0%
! GAGAATGATTTAACATTGTT+AGG - chr6_1:12169606-12169625 Msa0875490:CDS 25.0%
! GTTCAATGCTTAAAACAAAA+AGG - chr6_1:12170027-12170046 Msa0875490:CDS 25.0%
!!! CTATAGTAACAGTTTTAAAC+TGG - chr6_1:12170193-12170212 Msa0875490:CDS 25.0%
!!! ATAGTAACAGTTTTAAACTG+GGG - chr6_1:12170195-12170214 Msa0875490:CDS 25.0%
! AATAATTGAACTGCTGTTAA+TGG + chr6_1:12170327-12170346 None:intergenic 25.0%
! TAACAGCAGTTCAATTATTA+TGG - chr6_1:12170328-12170347 Msa0875490:CDS 25.0%
! AACAGCAGTTCAATTATTAT+GGG - chr6_1:12170329-12170348 Msa0875490:CDS 25.0%
! ATTATGGGTGAATTTGATTA+TGG - chr6_1:12170344-12170363 Msa0875490:CDS 25.0%
! AAAACCTACTAAGGAATTAA+TGG - chr6_1:12170398-12170417 Msa0875490:CDS 25.0%
! TTATCCATTAATTCCTTAGT+AGG + chr6_1:12170405-12170424 None:intergenic 25.0%
!! TTAATGGATAAAAAACCAGT+TGG - chr6_1:12170414-12170433 Msa0875490:CDS 25.0%
! CACATAATGTTAGTTATAAG+AGG + chr6_1:12170450-12170469 None:intergenic 25.0%
! CTCTTATAACTAACATTATG+TGG - chr6_1:12170448-12170467 Msa0875490:CDS 25.0%
! TTATAACTAACATTATGTGG+AGG - chr6_1:12170451-12170470 Msa0875490:CDS 25.0%
! TTGTTAACTCTTCAATTCAA+AGG - chr6_1:12170510-12170529 Msa0875490:CDS 25.0%
! TGTTTAATGAGTTTAATGCA+AGG - chr6_1:12170604-12170623 Msa0875490:CDS 25.0%
!!! AGAAGAAGAATGTTTTTGAA+GGG - chr6_1:12170634-12170653 Msa0875490:CDS 25.0%
!!! AGAGAATGGATTATTTGTAT+TGG - chr6_1:12170765-12170784 Msa0875490:CDS 25.0%
!!! TGGATTATTTGTATTGGTTT+TGG - chr6_1:12170771-12170790 Msa0875490:CDS 25.0%
! AACTTAACAACAAAACCAAT+TGG + chr6_1:12170810-12170829 None:intergenic 25.0%
TATGAGAGTTTCTTGATCAA+TGG + chr6_1:12167785-12167804 None:intergenic 30.0%
CTTAAAACCAACATTGAGTT+TGG - chr6_1:12167874-12167893 Msa0875490:CDS 30.0%
!! ATTTTGGAGACATTGCAATT+AGG - chr6_1:12167917-12167936 Msa0875490:CDS 30.0%
!!! AGGTGGTTTTTTGTAATTGT+TGG + chr6_1:12167959-12167978 None:intergenic 30.0%
! GATGTTGTTTGTTTGAAGAT+TGG - chr6_1:12168279-12168298 Msa0875490:CDS 30.0%
!!! TTTCATCCTTTTTTGCTTTC+GGG - chr6_1:12168405-12168424 Msa0875490:CDS 30.0%
! TTATTCAACCTTGTTTGCAA+AGG + chr6_1:12168540-12168559 None:intergenic 30.0%
AATAAGCTAACATCATCGAT+CGG - chr6_1:12168555-12168574 Msa0875490:CDS 30.0%
GATGTGATGAATGCAATTAT+TGG - chr6_1:12168699-12168718 Msa0875490:intron 30.0%
! TTCGGTATTACCTGTTTTAT+CGG + chr6_1:12168892-12168911 None:intergenic 30.0%
TTGATCAATTGAAGAACAGA+TGG + chr6_1:12169123-12169142 None:intergenic 30.0%
GTTCTTCAATTGATCAAAGA+AGG - chr6_1:12169126-12169145 Msa0875490:CDS 30.0%
!! GATTCTGAATTTGAGTTTTC+AGG - chr6_1:12169198-12169217 Msa0875490:CDS 30.0%
!!! GATAGTATTGCTTTTTCTGT+TGG + chr6_1:12169228-12169247 None:intergenic 30.0%
CAGAAAAAGCAATACTATCT+TGG - chr6_1:12169229-12169248 Msa0875490:CDS 30.0%
AACTCAAAGAAGAAAAGAAG+TGG - chr6_1:12169324-12169343 Msa0875490:CDS 30.0%
ACAACAAAACTATTGCACAT+TGG - chr6_1:12169370-12169389 Msa0875490:CDS 30.0%
AAAACTATTGCACATTGGAA+AGG - chr6_1:12169375-12169394 Msa0875490:CDS 30.0%
TTAACATTGTTAGGACTTGT+CGG - chr6_1:12169615-12169634 Msa0875490:CDS 30.0%
!! AATCATTTTGACATTCACAC+CGG + chr6_1:12169697-12169716 None:intergenic 30.0%
GTGAATGTCAAAATGATTAC+AGG - chr6_1:12169699-12169718 Msa0875490:CDS 30.0%
AAAGCTATAGCATTTGAATG+TGG - chr6_1:12169862-12169881 Msa0875490:CDS 30.0%
AGTCGAAAAAATATGTGTGA+TGG - chr6_1:12169972-12169991 Msa0875490:CDS 30.0%
TCCATTTGACAAACTTCTAA+TGG - chr6_1:12170005-12170024 Msa0875490:CDS 30.0%
ACCATTAGAAGTTTGTCAAA+TGG + chr6_1:12170009-12170028 None:intergenic 30.0%
ATTTCAACTAACAGTGAATG+TGG - chr6_1:12170254-12170273 Msa0875490:CDS 30.0%
! TTCAAAGGTGAGGATATTTT+TGG - chr6_1:12170525-12170544 Msa0875490:CDS 30.0%
!!! TATTTTTGGTGTGACATCAA+AGG - chr6_1:12170539-12170558 Msa0875490:CDS 30.0%
TGAGTTTAATGCAAGGAAAT+TGG - chr6_1:12170611-12170630 Msa0875490:CDS 30.0%
!! GAGAAGAAGAATGTTTTTGA+AGG - chr6_1:12170633-12170652 Msa0875490:CDS 30.0%
!!! TGTGTGTGATTGGTGTTTTT+TGG + chr6_1:12167628-12167647 None:intergenic 35.0%
!! TCTTTTGTTGTGTGTGTGAT+TGG + chr6_1:12167638-12167657 None:intergenic 35.0%
ATCACACACACAACAAAAGA+TGG - chr6_1:12167638-12167657 Msa0875490:CDS 35.0%
!!! AGGTGTGATTTTTGGTTTCT+TGG + chr6_1:12167716-12167735 None:intergenic 35.0%
! GATGGAATAGGTGTGATTTT+TGG + chr6_1:12167724-12167743 None:intergenic 35.0%
TGGTGAATTGAAATCAACCA+CGG + chr6_1:12167752-12167771 None:intergenic 35.0%
TGATCAATGGTAAAAGAGTG+TGG + chr6_1:12167772-12167791 None:intergenic 35.0%
ATCGACACACTTCAAAATCA+TGG - chr6_1:12167826-12167845 Msa0875490:CDS 35.0%
TTTGACACCAAACTCAATGT+TGG + chr6_1:12167884-12167903 None:intergenic 35.0%
GCAATTAGGAAACAAGTGTT+TGG - chr6_1:12167931-12167950 Msa0875490:CDS 35.0%
AAAGTGTAGCACAAACCAAA+AGG + chr6_1:12168038-12168057 None:intergenic 35.0%
AAGCAACATGGAATCAAAGA+AGG - chr6_1:12168075-12168094 Msa0875490:CDS 35.0%
AACATGGAATCAAAGAAGGT+TGG - chr6_1:12168079-12168098 Msa0875490:CDS 35.0%
!! ATCAAAGAAGGTTGGTATGA+TGG - chr6_1:12168087-12168106 Msa0875490:CDS 35.0%
AAATAACGATGAAAACAGCG+AGG + chr6_1:12168125-12168144 None:intergenic 35.0%
!! CAAATTGATTTGGTTCGAAG+TGG - chr6_1:12168216-12168235 Msa0875490:CDS 35.0%
!!! TTCATCCTTTTTTGCTTTCG+GGG - chr6_1:12168406-12168425 Msa0875490:CDS 35.0%
TGCAAAAATGCTCGTTACAT+CGG - chr6_1:12168449-12168468 Msa0875490:CDS 35.0%
AAGAAACACCTTTGCAAACA+AGG - chr6_1:12168529-12168548 Msa0875490:CDS 35.0%
! TCCTCGTTGTTCTATTGATT+CGG - chr6_1:12168607-12168626 Msa0875490:intron 35.0%
!! CTATTGATTCGGTATTTCAC+CGG - chr6_1:12168618-12168637 Msa0875490:intron 35.0%
!! TATTGATTCGGTATTTCACC+GGG - chr6_1:12168619-12168638 Msa0875490:intron 35.0%
AACGGAGTTAAAGAGTTCAA+CGG - chr6_1:12168657-12168676 Msa0875490:intron 35.0%
! ACTATTTGCACCGATAAAAC+AGG - chr6_1:12168879-12168898 Msa0875490:CDS 35.0%
ACTCACTTTGAATCAGATGA+AGG - chr6_1:12169038-12169057 Msa0875490:CDS 35.0%
TCACAAATCGAAATCAGGTT+CGG - chr6_1:12169176-12169195 Msa0875490:CDS 35.0%
! AATACTATCTTGGGCTGTTT+TGG - chr6_1:12169239-12169258 Msa0875490:CDS 35.0%
!!! GGCTGTTTTGGAATTGAAAA+TGG - chr6_1:12169251-12169270 Msa0875490:CDS 35.0%
! GAAGTGGAATTTTGTTGAGA+AGG - chr6_1:12169340-12169359 Msa0875490:CDS 35.0%
ATGTGTTCGAGATACTATGA+TGG - chr6_1:12169420-12169439 Msa0875490:intron 35.0%
TCGAGATACTATGATGGTTA+TGG - chr6_1:12169426-12169445 Msa0875490:intron 35.0%
!! CGAAAGCATTATTCAAGGTA+TGG - chr6_1:12169488-12169507 Msa0875490:intron 35.0%
AAGCATTATTCAAGGTATGG+CGG - chr6_1:12169491-12169510 Msa0875490:intron 35.0%
! ATTCTCTTTTACCACCATCT+TGG + chr6_1:12169592-12169611 None:intergenic 35.0%
TAACCAGGACACAAATGATA+CGG - chr6_1:12169897-12169916 Msa0875490:CDS 35.0%
TATGGATACATTAGGTGCAT+TGG - chr6_1:12170362-12170381 Msa0875490:CDS 35.0%
TGCAACTGAAAAACCTACTA+AGG - chr6_1:12170389-12170408 Msa0875490:CDS 35.0%
AACTCTTCAATTCAAAGGTG+AGG - chr6_1:12170515-12170534 Msa0875490:CDS 35.0%
!! ATTAGTGCTTCAAGTTGTGA+TGG - chr6_1:12170698-12170717 Msa0875490:CDS 35.0%
!! GAGTTTTTGAAGAAGTTTGC+TGG - chr6_1:12170723-12170742 Msa0875490:CDS 35.0%
AAAGGTTGAATTGGAGAGAA+TGG - chr6_1:12170751-12170770 Msa0875490:CDS 35.0%
! AGAAATGGTTTATCTGAGAC+AGG + chr6_1:12170837-12170856 None:intergenic 35.0%
AAATCAACCACGGTGAAAGA+TGG + chr6_1:12167742-12167761 None:intergenic 40.0%
GACACACTTCAAAATCATGG+TGG - chr6_1:12167829-12167848 Msa0875490:CDS 40.0%
! CAAAATCATGGTGGAGTTGA+AGG - chr6_1:12167838-12167857 Msa0875490:CDS 40.0%
GTTTGTGCTACACTTTCACT+TGG - chr6_1:12168042-12168061 Msa0875490:CDS 40.0%
!! AAAGAAGGTTGGTATGATGG+TGG - chr6_1:12168090-12168109 Msa0875490:CDS 40.0%
! GAAGATTGGTGATCAAGTAC+CGG - chr6_1:12168293-12168312 Msa0875490:CDS 40.0%
TCTACAAACAATCCATCAGC+CGG + chr6_1:12168315-12168334 None:intergenic 40.0%
!! GCTGATGGATTGTTTGTAGA+TGG - chr6_1:12168315-12168334 Msa0875490:CDS 40.0%
TTTGTCCCCGAAAGCAAAAA+AGG + chr6_1:12168414-12168433 None:intergenic 40.0%
AAAATGCTCGTTACATCGGT+CGG - chr6_1:12168453-12168472 Msa0875490:CDS 40.0%
ACATCATCGATCGGAAAAGT+TGG - chr6_1:12168564-12168583 Msa0875490:CDS 40.0%
! ATCGATCGGAAAAGTTGGTT+TGG - chr6_1:12168569-12168588 Msa0875490:CDS 40.0%
ACCGAATCAATAGAACAACG+AGG + chr6_1:12168611-12168630 None:intergenic 40.0%
GTTATCAGTCTTTGTGTTCC+CGG + chr6_1:12168640-12168659 None:intergenic 40.0%
GGGAACACAAAGACTGATAA+CGG - chr6_1:12168639-12168658 Msa0875490:intron 40.0%
AGTGTCAATGTCACAGCTAA+TGG + chr6_1:12168777-12168796 None:intergenic 40.0%
AATGATGGCTGATCAAGCAA+TGG - chr6_1:12168815-12168834 Msa0875490:CDS 40.0%
! AGATGAAGGTGACGAAGTTT+TGG - chr6_1:12169052-12169071 Msa0875490:CDS 40.0%
! GAATATGCACCCTTTTCCAA+TGG + chr6_1:12169090-12169109 None:intergenic 40.0%
GGTGTTCACAAATCGAAATC+AGG - chr6_1:12169171-12169190 Msa0875490:CDS 40.0%
GACGAAAAACTAGGAGATGA+AGG - chr6_1:12169558-12169577 Msa0875490:CDS 40.0%
GTTAGGACTTGTCGGTATTA+AGG - chr6_1:12169623-12169642 Msa0875490:CDS 40.0%
TGGAATACTTCAACCTAACC+AGG - chr6_1:12169882-12169901 Msa0875490:CDS 40.0%
GTATCATTTGTGTCCTGGTT+AGG + chr6_1:12169898-12169917 None:intergenic 40.0%
ACAAATGATACGGTGGTTGA+AGG - chr6_1:12169907-12169926 Msa0875490:CDS 40.0%
AGATGGAACAAATGATGCAC+CGG - chr6_1:12170071-12170090 Msa0875490:CDS 40.0%
!! ATATCGGCTTCTTTCAATGC+CGG + chr6_1:12170093-12170112 None:intergenic 40.0%
GCATTGAAAGAAGCCGATAT+CGG - chr6_1:12170093-12170112 Msa0875490:CDS 40.0%
TCCCATTGAAAGACCGATAT+CGG + chr6_1:12170109-12170128 None:intergenic 40.0%
GGTCTTTCAATGGGAATTCA+AGG - chr6_1:12170114-12170133 Msa0875490:CDS 40.0%
TGTTATCAATTTCGTAGCCG+CGG - chr6_1:12170284-12170303 Msa0875490:CDS 40.0%
TGCTGTTAATGGTACTTCAC+CGG + chr6_1:12170316-12170335 None:intergenic 40.0%
!! AGAAGTTTGCTGGTACAGAA+AGG - chr6_1:12170733-12170752 Msa0875490:CDS 40.0%
CTGGTACAGAAAGGTTGAAT+TGG - chr6_1:12170742-12170761 Msa0875490:CDS 40.0%
!!! TTGGTTTTGGTGCTGTTTCT+TGG - chr6_1:12170784-12170803 Msa0875490:CDS 40.0%
ACCTATTCCATCTTTCACCG+TGG - chr6_1:12167732-12167751 Msa0875490:CDS 45.0%
ACCACGGTGAAAGATGGAAT+AGG + chr6_1:12167736-12167755 None:intergenic 45.0%
GCTACACTTTCACTTGGCTT+TGG - chr6_1:12168048-12168067 Msa0875490:CDS 45.0%
! GGCTTTGGTATCAAGCAACA+TGG - chr6_1:12168063-12168082 Msa0875490:CDS 45.0%
! ATTTGGTTCGAAGTGGTCGT+CGG - chr6_1:12168223-12168242 Msa0875490:CDS 45.0%
! GTTGATGAATCGAGCATGAC+AGG - chr6_1:12168351-12168370 Msa0875490:CDS 45.0%
GTTGTCGTTGCAATTCCTGA+GGG - chr6_1:12168747-12168766 Msa0875490:CDS 45.0%
ACTCTCTGCATGTGAGACTA+TGG - chr6_1:12168845-12168864 Msa0875490:CDS 45.0%
CTCTCTGCATGTGAGACTAT+GGG - chr6_1:12168846-12168865 Msa0875490:CDS 45.0%
!!! AAGGTGACGAAGTTTTGGCT+TGG - chr6_1:12169057-12169076 Msa0875490:CDS 45.0%
! TGGTCTAGAGCCATTGGAAA+AGG - chr6_1:12169077-12169096 Msa0875490:CDS 45.0%
! GGTCTAGAGCCATTGGAAAA+GGG - chr6_1:12169078-12169097 Msa0875490:CDS 45.0%
GGAGTTGCTCTCAATACAAC+TGG - chr6_1:12169147-12169166 Msa0875490:CDS 45.0%
GTTGCTCTCAATACAACTGG+TGG - chr6_1:12169150-12169169 Msa0875490:CDS 45.0%
TTCGTCTGCGACTTCTGTAT+AGG + chr6_1:12169544-12169563 None:intergenic 45.0%
GAAGTCGCAGACGAAAAACT+AGG - chr6_1:12169549-12169568 Msa0875490:intron 45.0%
TGAAGGAGACAACACCAAGA+TGG - chr6_1:12169575-12169594 Msa0875490:CDS 45.0%
CTCCTGTTACAGCAACTACA+TGG + chr6_1:12170053-12170072 None:intergenic 45.0%
GTAGTTGCTGTAACAGGAGA+TGG - chr6_1:12170054-12170073 Msa0875490:CDS 45.0%
AGCCGATATCGGTCTTTCAA+TGG - chr6_1:12170104-12170123 Msa0875490:CDS 45.0%
GCCGATATCGGTCTTTCAAT+GGG - chr6_1:12170105-12170124 Msa0875490:CDS 45.0%
!! AGAGGCTTTGTTCTACCAAC+TGG + chr6_1:12170432-12170451 None:intergenic 45.0%
! TCGAAGTGGTCGTCGGTTAA+AGG - chr6_1:12168230-12168249 Msa0875490:CDS 50.0%
TCGGGGACAAAAGTTGTCGA+TGG - chr6_1:12168423-12168442 Msa0875490:CDS 50.0%
GGTCGGTATGAACACGACAT+GGG - chr6_1:12168470-12168489 Msa0875490:CDS 50.0%
GTCGGTATGAACACGACATG+GGG - chr6_1:12168471-12168490 Msa0875490:CDS 50.0%
CGTTGTCGTTGCAATTCCTG+AGG - chr6_1:12168746-12168765 Msa0875490:CDS 50.0%
ACAGCTAATGGCAAACCCTC+AGG + chr6_1:12168765-12168784 None:intergenic 50.0%
!! TTGGCTTGGTCTAGAGCCAT+TGG - chr6_1:12169071-12169090 Msa0875490:CDS 50.0%
TTGGAAAGGAGCAGCAGAGA+TGG - chr6_1:12169389-12169408 Msa0875490:CDS 50.0%
AGGAGACAACACCAAGATGG+TGG - chr6_1:12169578-12169597 Msa0875490:CDS 50.0%
ATTAAGGATCCGTGTCGTCC+AGG - chr6_1:12169639-12169658 Msa0875490:CDS 50.0%
TTAAGGATCCGTGTCGTCCA+GGG - chr6_1:12169640-12169659 Msa0875490:CDS 50.0%
TGACATTCACACCGGCATGT+TGG + chr6_1:12169689-12169708 None:intergenic 50.0%
CCACCGTATCATTTGTGTCC+TGG + chr6_1:12169903-12169922 None:intergenic 50.0%
CCAGGACACAAATGATACGG+TGG - chr6_1:12169900-12169919 Msa0875490:CDS 50.0%
GGCCATGTAGTTGCTGTAAC+AGG - chr6_1:12170048-12170067 Msa0875490:CDS 50.0%
!! GGTGCTGTTTCTTGGCCAAT+TGG - chr6_1:12170792-12170811 Msa0875490:CDS 50.0%
!! GGTGATCAAGTACCGGCTGA+TGG - chr6_1:12168300-12168319 Msa0875490:CDS 55.0%
CGGTCGGTATGAACACGACA+TGG - chr6_1:12168469-12168488 Msa0875490:CDS 55.0%
TAAGGATCCGTGTCGTCCAG+GGG - chr6_1:12169641-12169660 Msa0875490:CDS 55.0%
GTGGAAGCTTGCCAACATGC+CGG - chr6_1:12169675-12169694 Msa0875490:CDS 55.0%
! TACTTCACCGGCTGAAACCG+CGG + chr6_1:12170304-12170323 None:intergenic 55.0%
GTCTTCACCCCTGGACGACA+CGG + chr6_1:12169651-12169670 None:intergenic 60.0%
TCGTCCAGGGGTGAAGACAG+CGG - chr6_1:12169653-12169672 Msa0875490:CDS 60.0%
TTCGTAGCCGCGGTTTCAGC+CGG - chr6_1:12170294-12170313 Msa0875490:CDS 60.0%
TCCAGGGGTGAAGACAGCGG+TGG - chr6_1:12169656-12169675 Msa0875490:CDS 65.0%
TCCACCGCTGTCTTCACCCC+TGG + chr6_1:12169660-12169679 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr6_1 gene 12167571 12170884 12167571 ID=Msa0875490;Name=Msa0875490
chr6_1 mRNA 12167571 12170884 12167571 ID=Msa0875490-mRNA-1;Parent=Msa0875490;Name=Msa0875490-mRNA-1;_AED=0.01;_eAED=0.01;_QI=0|1|0|1|1|1|3|0|1019
chr6_1 exon 12169555 12170884 12169555 ID=Msa0875490-mRNA-1:exon:3662;Parent=Msa0875490-mRNA-1
chr6_1 exon 12168735 12169421 12168735 ID=Msa0875490-mRNA-1:exon:3661;Parent=Msa0875490-mRNA-1
chr6_1 exon 12167571 12168613 12167571 ID=Msa0875490-mRNA-1:exon:3660;Parent=Msa0875490-mRNA-1
chr6_1 CDS 12169555 12170884 12169555 ID=Msa0875490-mRNA-1:cds;Parent=Msa0875490-mRNA-1
chr6_1 CDS 12168735 12169421 12168735 ID=Msa0875490-mRNA-1:cds;Parent=Msa0875490-mRNA-1
chr6_1 CDS 12167571 12168613 12167571 ID=Msa0875490-mRNA-1:cds;Parent=Msa0875490-mRNA-1
Gene Sequence

>Msa0875490

ATGTCAATGACATTTTTCACAAACATGAACGACATTGAGACACTTCTCAATGCACCAAAAAACACCAATCACACACACAACAAAAGATGGCACAATGCTTTCATGAAAATCTATTGTTCTAGGGCTTTCATGTCACATTTTACCAAGAAACCAAAAATCACACCTATTCCATCTTTCACCGTGGTTGATTTCAATTCACCACACTCTTTTACCATTGATCAAGAAACTCTCATAGATATTGTCAAAGAGAAAAACATCGACACACTTCAAAATCATGGTGGAGTTGAAGGTGTTGCTTCATCACTTAAAACCAACATTGAGTTTGGTGTCAAAAGTGATGATCATGATTTTGGAGACATTGCAATTAGGAAACAAGTGTTTGGTTCCAACAATTACAAAAAACCACCTTCTAAAAGTTTTATTCATTTTGTTGTTGAAGCTTTTAAGGATGTAACAATTTTAATCCTTTTGGTTTGTGCTACACTTTCACTTGGCTTTGGTATCAAGCAACATGGAATCAAAGAAGGTTGGTATGATGGTGGCAGCATTTTCCTCGCTGTTTTCATCGTTATTTCGATGTCATCAATAAGCAACTTCAAACAAAACAAACAATTTGATAAATTGTCTCAAGTTAGCAATGACATTCAAATTGATTTGGTTCGAAGTGGTCGTCGGTTAAAGGTATCAATATTTGATATTGTTGTTGGTGATGTTGTTTGTTTGAAGATTGGTGATCAAGTACCGGCTGATGGATTGTTTGTAGATGGACATTCGTTGAGAGTTGATGAATCGAGCATGACAGGTGAGAGCGATCATGTTGAGATAAATCGAAATTTTCATCCTTTTTTGCTTTCGGGGACAAAAGTTGTCGATGGATATGCAAAAATGCTCGTTACATCGGTCGGTATGAACACGACATGGGGACAAATGATGAGTTCGATAAGCAATGACATCGACGAAGAAACACCTTTGCAAACAAGGTTGAATAAGCTAACATCATCGATCGGAAAAGTTGGTTTGGTTGTCGCGTTTTTAGTCCTCGTTGTTCTATTGATTCGGTATTTCACCGGGAACACAAAGACTGATAACGGAGTTAAAGAGTTCAACGGTAAAAAGACTAGTTTCGATGATGTGATGAATGCAATTATTGGAATCATTGCTGATGCTGTTACTATCGTTGTCGTTGCAATTCCTGAGGGTTTGCCATTAGCTGTGACATTGACACTTGCTTATTCAATGAAGAAAATGATGGCTGATCAAGCAATGGTGAGAAAACTCTCTGCATGTGAGACTATGGGATCTGCTACTACTATTTGCACCGATAAAACAGGTACACTCACTTTGAATCAGATGAAGGTGACGAAGTTTTGGCTTGGTCTAGAGCCATTGGAAAAGGGTGCATATTCAAATGTTGATCCATCTGTTCTTCAATTGATCAAAGAAGGAGTTGCTCTCAATACAACTGGTGGTGTTCACAAATCGAAATCAGGTTCGGATTCTGAATTTGAGTTTTCAGGTAGTCCAACAGAAAAAGCAATACTATCTTGGGCTGTTTTGGAATTGAAAATGGATATGGAGCACTTGACAAAAAGTTGTTCTATTCTTCAAGTTGAGACTTTCAACTCAAAGAAGAAAAGAAGTGGAATTTTGTTGAGAAGGAATGTTGACAACAAAACTATTGCACATTGGAAAGGAGCAGCAGAGATGGTACTAAGAATGTGTTCGAGATACTATGATGGTTATGGAATTTTGAAAGATCTTGACAATGAATCTATGCTGAAATTCGAAAGCATTATTCAAGGTATGGCGGCTAGTAGTCTTCGTTGCATCGCTTTAGCCTATACAGAAGTCGCAGACGAAAAACTAGGAGATGAAGGAGACAACACCAAGATGGTGGTAAAAGAGAATGATTTAACATTGTTAGGACTTGTCGGTATTAAGGATCCGTGTCGTCCAGGGGTGAAGACAGCGGTGGAAGCTTGCCAACATGCCGGTGTGAATGTCAAAATGATTACAGGTGACAATGTTTTCACTGCGAAAGCTATAGCATTTGAATGTGGAATACTTCAACCTAACCAGGACACAAATGATACGGTGGTTGAAGGCGAGCAATTTCGCAACTTTACGCACGAAGAGAGATTAGAAAAAGTCGAAAAAATATGTGTGATGGCAAGATCTTCTCCATTTGACAAACTTCTAATGGTTCAATGCTTAAAACAAAAAGGCCATGTAGTTGCTGTAACAGGAGATGGAACAAATGATGCACCGGCATTGAAAGAAGCCGATATCGGTCTTTCAATGGGAATTCAAGGTACTGAAGTAGCAAAAGAGAGTTCAGATATTGTTATATTAGATGACAATTTTGCATCTATAGTAACAGTTTTAAACTGGGGAAGATGTGTTTACAACAACATTCAAAAATTCATTCAATTTCAACTAACAGTGAATGTGGCAGCACTTGTTATCAATTTCGTAGCCGCGGTTTCAGCCGGTGAAGTACCATTAACAGCAGTTCAATTATTATGGGTGAATTTGATTATGGATACATTAGGTGCATTGGCTCTTGCAACTGAAAAACCTACTAAGGAATTAATGGATAAAAAACCAGTTGGTAGAACAAAGCCTCTTATAACTAACATTATGTGGAGGAATCTTGTGTCACAAGCTTTGTACCAAATAGTAATATTGTTAACTCTTCAATTCAAAGGTGAGGATATTTTTGGTGTGACATCAAAGGTAAATGACACATTGATATTTAATACATTTGTTCTATGTCAAGTGTTTAATGAGTTTAATGCAAGGAAATTGGAGAAGAAGAATGTTTTTGAAGGGATATTTAGAAGCAAATTGTTTTTGGGAATTATTGGTGTGACATTAGTGCTTCAAGTTGTGATGGTTGAGTTTTTGAAGAAGTTTGCTGGTACAGAAAGGTTGAATTGGAGAGAATGGATTATTTGTATTGGTTTTGGTGCTGTTTCTTGGCCAATTGGTTTTGTTGTTAAGTTGATTCCTGTCTCAGATAAACCATTTCTTGATTTTTTTAGTATGAAGAAGACTTAG
Protein sequence

>Msa0875490

MSMTFFTNMNDIETLLNAPKNTNHTHNKRWHNAFMKIYCSRAFMSHFTKKPKITPIPSFTVVDFNSPHSFTIDQETLIDIVKEKNIDTLQNHGGVEGVASSLKTNIEFGVKSDDHDFGDIAIRKQVFGSNNYKKPPSKSFIHFVVEAFKDVTILILLVCATLSLGFGIKQHGIKEGWYDGGSIFLAVFIVISMSSISNFKQNKQFDKLSQVSNDIQIDLVRSGRRLKVSIFDIVVGDVVCLKIGDQVPADGLFVDGHSLRVDESSMTGESDHVEINRNFHPFLLSGTKVVDGYAKMLVTSVGMNTTWGQMMSSISNDIDEETPLQTRLNKLTSSIGKVGLVVAFLVLVVLLIRYFTGNTKTDNGVKEFNGKKTSFDDVMNAIIGIIADAVTIVVVAIPEGLPLAVTLTLAYSMKKMMADQAMVRKLSACETMGSATTICTDKTGTLTLNQMKVTKFWLGLEPLEKGAYSNVDPSVLQLIKEGVALNTTGGVHKSKSGSDSEFEFSGSPTEKAILSWAVLELKMDMEHLTKSCSILQVETFNSKKKRSGILLRRNVDNKTIAHWKGAAEMVLRMCSRYYDGYGILKDLDNESMLKFESIIQGMAASSLRCIALAYTEVADEKLGDEGDNTKMVVKENDLTLLGLVGIKDPCRPGVKTAVEACQHAGVNVKMITGDNVFTAKAIAFECGILQPNQDTNDTVVEGEQFRNFTHEERLEKVEKICVMARSSPFDKLLMVQCLKQKGHVVAVTGDGTNDAPALKEADIGLSMGIQGTEVAKESSDIVILDDNFASIVTVLNWGRCVYNNIQKFIQFQLTVNVAALVINFVAAVSAGEVPLTAVQLLWVNLIMDTLGALALATEKPTKELMDKKPVGRTKPLITNIMWRNLVSQALYQIVILLTLQFKGEDIFGVTSKVNDTLIFNTFVLCQVFNEFNARKLEKKNVFEGIFRSKLFLGIIGVTLVLQVVMVEFLKKFAGTERLNWREWIICIGFGAVSWPIGFVVKLIPVSDKPFLDFFSMKKT*