AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0875480

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0875480 MtrunA17_Chr6g0456201 95.490 1020 44 2 1 1018 1 1020 0.0 1966
Msa0875480 MtrunA17_Chr7g0260401 64.804 1020 318 9 28 1012 34 1047 0.0 1255
Msa0875480 MtrunA17_Chr8g0340261 89.142 571 44 2 448 1017 1 554 0.0 1038
Msa0875480 MtrunA17_Chr2g0298871 56.463 967 396 9 53 1009 123 1074 0.0 1036
Msa0875480 MtrunA17_Chr4g0002331 53.083 1038 422 13 20 1009 66 1086 0.0 1017
Msa0875480 MtrunA17_Chr1g0173111 45.903 1013 496 17 6 1004 37 1011 0.0 854
Msa0875480 MtrunA17_Chr8g0382071 47.794 952 455 16 70 1007 94 1017 0.0 847
Msa0875480 MtrunA17_Chr8g0340271 90.175 458 38 2 1 458 1 451 0.0 817
Msa0875480 MtrunA17_Chr4g0054021 48.067 957 463 13 57 1004 6 937 0.0 811
Msa0875480 MtrunA17_Chr3g0134771 47.497 939 455 12 80 1006 106 1018 0.0 801
Msa0875480 MtrunA17_Chr5g0401211 47.753 957 460 15 63 1004 83 1014 0.0 799
Msa0875480 MtrunA17_Chr4g0020551 46.682 874 424 14 70 928 27 873 0.0 754
Msa0875480 MtrunA17_Chr8g0355421 41.412 949 512 16 70 1004 87 1005 0.0 688
Msa0875480 MtrunA17_Chr5g0447521 33.982 874 520 15 152 1002 165 1004 2.31e-144 458
Msa0875480 MtrunA17_Chr4g0005551 30.909 990 612 19 39 1004 26 967 4.62e-139 442
Msa0875480 MtrunA17_Chr2g0334231 52.618 382 169 3 70 451 135 504 1.14e-121 382
Msa0875480 MtrunA17_Chr7g0263361 33.099 855 459 24 115 885 48 873 3.73e-108 361
Msa0875480 MtrunA17_Chr8g0346461 31.228 871 480 24 107 885 25 868 4.11e-95 325
Msa0875480 MtrunA17_Chr3g0134951 29.916 829 490 20 120 885 29 829 4.14e-86 299
Msa0875480 MtrunA17_Chr2g0334221 52.174 299 135 6 469 764 43 336 7.82e-85 278
Msa0875480 MtrunA17_Chr2g0334201 55.357 168 70 1 846 1008 1 168 2.60e-61 206
Msa0875480 MtrunA17_Chr8g0381711 25.417 779 471 24 154 900 69 769 2.61e-46 180
Msa0875480 MtrunA17_Chr4g0065481 23.127 761 465 26 72 816 1 657 1.79e-45 177
Msa0875480 MtrunA17_Chr4g0072131 23.829 726 459 21 95 816 24 659 6.17e-45 176
Msa0875480 MtrunA17_Chr2g0298031 24.459 601 372 13 219 816 141 662 6.99e-44 172
Msa0875480 MtrunA17_Chr6g0452721 23.987 617 369 19 219 824 138 665 7.60e-43 169
Msa0875480 MtrunA17_Chr3g0138931 22.973 740 474 19 81 816 9 656 3.40e-42 167
Msa0875480 MtrunA17_Chr2g0304941 22.310 762 467 25 81 824 10 664 6.31e-42 166
Msa0875480 MtrunA17_Chr1g0148031 23.490 596 355 16 233 816 150 656 7.09e-42 166
Msa0875480 MtrunA17_Chr2g0333721 24.059 611 376 16 219 824 134 661 3.09e-41 164
Msa0875480 MtrunA17_Chr4g0059961 24.065 615 371 18 219 824 140 667 3.31e-41 164
Msa0875480 MtrunA17_Chr8g0365021 23.597 606 370 16 219 816 206 726 5.86e-41 164
Msa0875480 MtrunA17_Chr1g0147981 22.563 718 432 22 121 816 58 673 8.17e-40 160
Msa0875480 MtrunA17_Chr8g0335291 23.237 624 364 18 219 824 144 670 1.14e-37 153
Msa0875480 MtrunA17_Chr7g0276551 25.161 465 290 11 386 847 42 451 6.06e-32 134
Msa0875480 MtrunA17_Chr5g0421231 80.000 80 16 0 521 600 279 358 8.26e-32 134
Msa0875480 MtrunA17_Chr3g0131151 23.684 684 390 21 173 779 215 843 4.66e-23 106
Msa0875480 MtrunA17_Chr2g0324791 21.338 792 460 22 212 862 98 867 4.34e-21 100
Msa0875480 MtrunA17_Chr8g0374391 29.032 186 100 3 636 821 32 185 6.45e-19 87.4
Msa0875480 MtrunA17_Chr8g0374331 29.032 186 100 3 636 821 39 192 6.95e-19 87.4
Msa0875480 MtrunA17_Chr2g0297051 29.353 201 109 3 621 821 804 971 2.40e-18 90.9
Msa0875480 MtrunA17_Chr4g0052521 28.141 199 110 3 621 819 772 937 6.37e-17 86.3
Msa0875480 MtrunA17_Chr5g0397621 30.000 190 97 5 612 798 664 820 7.16e-17 86.3
Msa0875480 MtrunA17_Chr8g0339181 29.208 202 104 4 639 839 759 922 3.52e-16 84.0
Msa0875480 MtrunA17_Chr4g0062251 22.881 472 266 19 501 889 555 1011 2.05e-15 81.6
Msa0875480 MtrunA17_Chr5g0415271 21.397 673 370 24 185 717 92 745 3.41e-13 74.3
Msa0875480 MtrunA17_Chr2g0297871 26.667 210 113 7 638 847 356 524 3.99e-12 70.5
Msa0875480 MtrunA17_Chr8g0363911 24.000 375 192 13 421 717 406 765 6.03e-11 67.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0875480 AT3G22910.1 66.962 1017 307 12 12 1017 17 1015 0.0 1299
Msa0875480 AT3G63380.1 65.905 1006 309 11 27 1013 25 1015 0.0 1276
Msa0875480 AT4G29900.1 53.912 1048 439 11 6 1017 23 1062 0.0 1070
Msa0875480 AT4G29900.2 53.912 1048 439 11 6 1017 23 1062 0.0 1070
Msa0875480 AT5G57110.1 56.426 957 398 8 70 1017 114 1060 0.0 1053
Msa0875480 AT5G57110.3 56.426 957 398 8 70 1017 114 1060 0.0 1053
Msa0875480 AT5G57110.2 56.426 957 398 8 70 1017 114 1060 0.0 1053
Msa0875480 AT3G21180.1 55.532 958 400 11 66 1009 124 1069 0.0 1010
Msa0875480 AT3G57330.1 47.089 962 473 12 57 1011 80 1012 0.0 867
Msa0875480 AT3G57330.2 47.089 962 473 12 57 1011 25 957 0.0 867
Msa0875480 AT2G41560.1 44.587 1016 516 15 6 1011 37 1015 0.0 847
Msa0875480 AT2G41560.2 46.497 942 465 12 80 1011 1 913 0.0 833
Msa0875480 AT2G41560.3 46.497 942 465 12 80 1011 1 913 0.0 833
Msa0875480 AT2G41560.4 46.497 942 465 12 80 1011 1 913 0.0 833
Msa0875480 AT1G27770.3 46.891 949 467 13 70 1006 33 956 0.0 803
Msa0875480 AT1G27770.4 46.891 949 467 13 70 1006 96 1019 0.0 803
Msa0875480 AT1G27770.1 46.891 949 467 13 70 1006 96 1019 0.0 803
Msa0875480 AT4G37640.1 47.237 959 471 15 57 1004 80 1014 0.0 785
Msa0875480 AT2G22950.1 45.309 1002 493 14 27 1004 45 1015 0.0 777
Msa0875480 AT5G53010.1 36.670 949 520 19 70 992 140 1033 5.00e-174 536
Msa0875480 AT5G53010.2 34.734 714 430 13 18 712 70 766 3.28e-121 389
Msa0875480 AT1G27770.2 41.577 558 303 9 70 620 96 637 1.56e-117 384
Msa0875480 AT1G27770.2 56.270 311 131 2 701 1006 635 945 3.53e-108 359
Msa0875480 AT1G07810.1 33.020 851 473 24 107 885 43 868 6.06e-108 361
Msa0875480 AT1G07670.2 33.174 835 466 23 123 885 54 868 7.97e-108 360
Msa0875480 AT1G07670.1 33.174 835 466 23 123 885 54 868 7.97e-108 360
Msa0875480 AT4G00900.2 32.751 858 468 25 95 868 14 846 5.29e-102 344
Msa0875480 AT4G00900.1 32.751 858 468 25 95 868 14 846 5.29e-102 344
Msa0875480 AT1G10130.1 28.718 975 564 25 123 1002 32 970 6.66e-88 304
Msa0875480 AT2G24520.2 24.320 588 360 13 233 816 193 699 1.18e-43 172
Msa0875480 AT2G24520.3 24.320 588 360 13 233 816 130 636 1.40e-43 172
Msa0875480 AT2G24520.1 24.320 588 360 13 233 816 130 636 1.40e-43 172
Msa0875480 AT3G42640.1 23.452 759 466 26 79 824 8 664 4.49e-43 170
Msa0875480 AT1G80660.2 24.473 617 366 20 219 824 10 537 4.06e-42 167
Msa0875480 AT1G80660.3 24.473 617 366 20 219 824 139 666 5.65e-42 167
Msa0875480 AT1G80660.1 24.311 617 367 19 219 824 139 666 6.00e-42 167
Msa0875480 AT1G80660.4 24.473 617 366 20 219 824 139 666 6.25e-42 167
Msa0875480 AT3G60330.4 23.902 615 367 19 220 824 138 661 6.92e-42 167
Msa0875480 AT3G60330.3 23.902 615 367 19 220 824 138 661 6.92e-42 167
Msa0875480 AT3G60330.2 23.817 613 370 18 220 824 138 661 1.43e-41 166
Msa0875480 AT3G60330.1 23.817 613 370 18 220 824 138 661 1.43e-41 166
Msa0875480 AT3G47950.1 23.786 618 369 19 219 824 142 669 2.00e-41 165
Msa0875480 AT3G47950.2 23.786 618 369 19 219 824 142 669 2.00e-41 165
Msa0875480 AT2G07560.1 22.764 738 462 24 123 847 44 686 2.78e-41 165
Msa0875480 AT1G17260.1 25.253 594 346 16 233 816 156 661 8.02e-41 163
Msa0875480 AT5G62670.1 23.701 616 372 18 219 824 138 665 9.71e-41 163
Msa0875480 AT4G30190.1 23.307 635 397 16 219 847 134 684 3.14e-39 158
Msa0875480 AT2G18960.1 23.150 635 398 16 219 847 134 684 1.15e-38 156
Msa0875480 AT2G18960.3 23.150 635 398 16 219 847 70 620 1.44e-38 156
Msa0875480 AT2G18960.2 23.150 635 398 16 219 847 70 620 1.44e-38 156
Msa0875480 AT5G57350.4 22.838 613 366 16 219 816 135 655 7.94e-38 154
Msa0875480 AT5G57350.2 22.838 613 366 16 219 816 135 655 7.94e-38 154
Msa0875480 AT5G57350.1 22.838 613 366 16 219 816 135 655 7.94e-38 154
Msa0875480 AT4G30190.2 22.339 667 397 19 219 847 134 717 1.01e-35 147
Msa0875480 AT2G24520.4 23.570 437 272 10 386 816 13 393 2.86e-29 125
Msa0875480 AT5G57350.3 23.423 444 264 12 386 816 13 393 6.61e-27 118
Msa0875480 AT5G23630.1 22.687 670 387 18 173 766 215 829 7.44e-24 109
Msa0875480 AT1G63440.1 30.435 207 108 6 618 821 764 937 4.59e-20 97.1
Msa0875480 AT5G44790.1 31.188 202 106 4 620 821 780 948 4.95e-18 90.5
Msa0875480 AT4G11730.1 21.598 338 223 11 123 455 45 345 1.88e-15 81.6
Msa0875480 AT4G30110.1 27.143 210 113 4 638 847 510 679 1.65e-14 79.0
Msa0875480 AT4G30110.2 27.143 210 113 4 638 847 510 679 1.65e-14 79.0
Msa0875480 AT2G19110.2 26.383 235 131 6 639 873 521 713 4.99e-13 74.3
Msa0875480 AT2G19110.3 26.383 235 131 6 639 873 521 713 4.99e-13 74.3
Msa0875480 AT2G19110.1 26.383 235 131 6 639 873 521 713 4.99e-13 74.3

Find 155 sgRNAs with CRISPR-Local

Find 203 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TAACAGCAGTTCAATTATTA+TGG 0.156185 6_1:+12127718 Msa0875480:CDS
TCATGAAAATCTATTGTTCT+AGG 0.192582 6_1:+12125060 Msa0875480:CDS
AAAAGTGATGATCATGATTT+TGG 0.223820 6_1:+12125290 Msa0875480:CDS
TGAGTTTAATGCAAGGAAAT+TGG 0.225227 6_1:+12128001 Msa0875480:CDS
ATTATGGGTGAATTTGATTA+TGG 0.241738 6_1:+12127734 Msa0875480:CDS
AATAATTGAACTGCTGTTAA+TGG 0.244697 6_1:-12127714 None:intergenic
AAAACCTACTAAGGAATTAA+TGG 0.259126 6_1:+12127788 Msa0875480:CDS
GTTAGGGCTTGTCGGTATTA+AGG 0.265803 6_1:+12127009 Msa0875480:CDS
GTTCAATGTTTAAAACAAAA+AGG 0.271876 6_1:+12127417 Msa0875480:CDS
AATACTATCTTGGGCTGTTT+TGG 0.272622 6_1:+12126628 Msa0875480:CDS
ACTCTCTGCATGTGAGACTA+TGG 0.284040 6_1:+12126234 Msa0875480:CDS
GACAATGATTTAACATTGTT+AGG 0.284588 6_1:+12126992 Msa0875480:CDS
TCCATTTGACAAACTTCTAA+TGG 0.296674 6_1:+12127395 Msa0875480:CDS
TTTGGAATTGAAAATGGATA+TGG 0.303373 6_1:+12126646 Msa0875480:CDS
GAGTTAACAATATTACTATT+TGG 0.303748 6_1:-12127887 None:intergenic
TCCCATTGAAAGACCGATAT+CGG 0.305491 6_1:-12127496 None:intergenic
CAATGACATTCAAATTGATT+TGG 0.308945 6_1:+12125595 Msa0875480:CDS
GTTTCATCTGTGTCCTCATT+AGG 0.309923 6_1:-12127285 None:intergenic
AGATGAAGGTGACGAAGTTT+TGG 0.311024 6_1:+12126441 Msa0875480:CDS
TCGAAGTGGTCGTCGGTTAA+AGG 0.314231 6_1:+12125619 Msa0875480:CDS
CTTAAAACCAACATTGAGTT+TGG 0.314281 6_1:+12125263 Msa0875480:CDS
GGTGCTATTTCTTGGCCAAT+TGG 0.323166 6_1:+12128182 Msa0875480:CDS
TGGATTATTTGTATTGGTTT+TGG 0.330074 6_1:+12128161 Msa0875480:CDS
CACATAATGTTAGTTATAAG+AGG 0.361954 6_1:-12127837 None:intergenic
CTGGTACAGAAAGGTTGAAT+TGG 0.367852 6_1:+12128132 Msa0875480:CDS
TTATCCATTAATTCCTTAGT+AGG 0.369250 6_1:-12127792 None:intergenic
GGCCATGTAGTTGCTGTAAC+AGG 0.373182 6_1:+12127438 Msa0875480:CDS
GCTATCGTTCTTTGTGTTCC+CGG 0.377833 6_1:-12126026 None:intergenic
GCTACACTTTCACTTGGCTT+TGG 0.378331 6_1:+12125437 Msa0875480:CDS
AAAGGTTGAATTGGAGAGAA+TGG 0.383579 6_1:+12128141 Msa0875480:CDS
GCTGATGGATTGTTTGTAGA+TGG 0.387434 6_1:+12125704 Msa0875480:CDS
AACAGCAGTTCAATTATTAT+GGG 0.388612 6_1:+12127719 Msa0875480:CDS
AATTTGATTATGGATACATT+AGG 0.389466 6_1:+12127744 Msa0875480:CDS
GTGAATGTCAAAATGATTAC+AGG 0.392744 6_1:+12127085 Msa0875480:CDS
GATGTGATGAATGCAATTAT+TGG 0.400166 6_1:+12126088 Msa0875480:CDS
GATGTTGTTTGTTTGAAGAT+TGG 0.403237 6_1:+12125668 Msa0875480:CDS
TCAAGATACTATGATGGTTA+TGG 0.406417 6_1:+12126815 Msa0875480:CDS
GCAATTAGGAAACAAGTGTT+TGG 0.412156 6_1:+12125320 Msa0875480:CDS
AGAGGCTTTGTTCTACCAAC+TGG 0.413768 6_1:-12127819 None:intergenic
ATCGATCGGAAAAGTTGGTT+TGG 0.416711 6_1:+12125958 Msa0875480:CDS
ACCATTAGAAGTTTGTCAAA+TGG 0.418812 6_1:-12127396 None:intergenic
CGGAAAAGTTGGTTTGGTTG+TGG 0.424627 6_1:+12125964 Msa0875480:CDS
AGAAATGGTTTATTTGAGAC+AGG 0.426443 6_1:-12128224 None:intergenic
AGAGAATGGATTATTTGTAT+TGG 0.428342 6_1:+12128155 Msa0875480:CDS
CAAAATCATGGTGGAGTTGA+AGG 0.433331 6_1:+12125227 Msa0875480:CDS
CATGAAAATCTATTGTTCTA+GGG 0.434432 6_1:+12125061 Msa0875480:CDS
AGTGTCAATGTCACAGCTAA+TGG 0.439120 6_1:-12126163 None:intergenic
TATGAGAGTTTCTTGATCAA+TGG 0.439612 6_1:-12125171 None:intergenic
GTTCTTCAATTGATCAAAGA+AGG 0.439661 6_1:+12126515 Msa0875480:CDS
TGGTCTAGAGCCATTGGAAA+AGG 0.442604 6_1:+12126466 Msa0875480:CDS
ACAATGATTTAACATTGTTA+GGG 0.444141 6_1:+12126993 Msa0875480:CDS
ACTATTTGCACCGACAAAAC+AGG 0.445850 6_1:+12126268 Msa0875480:CDS
TCCACCGCTTTCTTCACCCC+TGG 0.447188 6_1:-12127043 None:intergenic
GGAGTTGCACTCAATACAAC+TGG 0.449947 6_1:+12126536 Msa0875480:CDS
TCAATATTTGATATTGTTGT+TGG 0.451599 6_1:+12125644 Msa0875480:CDS
CGAAAGCATTATTCAAGGTA+TGG 0.454195 6_1:+12126877 Msa0875480:CDS
AACTTAACAACAAAACCAAT+TGG 0.455892 6_1:-12128197 None:intergenic
CATCTGTGTCCTCATTAGGT+TGG 0.458267 6_1:-12127281 None:intergenic
AGCCGATATCGGTCTTTCAA+TGG 0.458474 6_1:+12127494 Msa0875480:CDS
GTTGATGAATCGAGCATGAC+AGG 0.461070 6_1:+12125740 Msa0875480:CDS
AAATCAACCACGGTGAAAGA+TGG 0.462754 6_1:-12125128 None:intergenic
AAAATGCTTGTTACATCGGT+TGG 0.465518 6_1:+12125842 Msa0875480:CDS
TATGGATACATTAGGTGCAT+TGG 0.476382 6_1:+12127752 Msa0875480:CDS
TTGGCTTGGTCTAGAGCCAT+TGG 0.476465 6_1:+12126460 Msa0875480:CDS
GTTTGTGCTACACTTTCACT+TGG 0.479286 6_1:+12125431 Msa0875480:CDS
TTCGTAGCCGCGGTTTCAGC+CGG 0.480048 6_1:+12127684 Msa0875480:CDS
GGTCTTTCAATGGGAATTCA+AGG 0.480265 6_1:+12127504 Msa0875480:CDS
TTAACATTGTTAGGGCTTGT+CGG 0.483188 6_1:+12127001 Msa0875480:CDS
TTGATCAATTGAAGAACAGA+TGG 0.483421 6_1:-12126509 None:intergenic
GCCGATATCGGTCTTTCAAT+GGG 0.484090 6_1:+12127495 Msa0875480:CDS
GGTGTTCACAAATCGAAATC+AGG 0.487786 6_1:+12126560 Msa0875480:CDS
TTCTTCACCCCTGGACGACA+TGG 0.495536 6_1:-12127034 None:intergenic
CTATTGATTCGATATTTCAC+CGG 0.496822 6_1:+12126007 Msa0875480:CDS
TCACAAATCGAAATCAGGTT+CGG 0.498715 6_1:+12126565 Msa0875480:CDS
ACAGATGAAACCGTGGTTGA+AGG 0.498794 6_1:+12127297 Msa0875480:CDS
TTGTTAACTCTTCAATTCAA+AGG 0.499732 6_1:+12127900 Msa0875480:CDS
ATTAAGGATCCATGTCGTCC+AGG 0.505479 6_1:+12127025 Msa0875480:CDS
ACATCATCGATCGGAAAAGT+TGG 0.506780 6_1:+12125953 Msa0875480:CDS
AGGAAACACCTTTGCAAACA+AGG 0.506800 6_1:+12125918 Msa0875480:CDS
AAATTCGAAAGCATTATTCA+AGG 0.506879 6_1:+12126872 Msa0875480:CDS
ATCGACACACTTCAAAATCA+TGG 0.514173 6_1:+12125215 Msa0875480:CDS
CGGAATTCTCCAACCTAATG+AGG 0.515315 6_1:+12127272 Msa0875480:CDS
TGCTGTTAATGGTACTTCAC+CGG 0.516236 6_1:-12127703 None:intergenic
ATCAAAGAAGGTTGGTATGA+TGG 0.518871 6_1:+12125476 Msa0875480:CDS
TTTGACACCAAACTCAATGT+TGG 0.521308 6_1:-12125270 None:intergenic
GCATTGAAAGAAGCCGATAT+CGG 0.523732 6_1:+12127483 Msa0875480:CDS
ATCACACACACAACAAAAGA+TGG 0.526243 6_1:+12125027 Msa0875480:CDS
AGAAGTTTGCTGGTACAGAA+AGG 0.529712 6_1:+12128123 Msa0875480:CDS
GTTGTTGTTGCAATTCCTGA+GGG 0.531565 6_1:+12126136 Msa0875480:CDS
CTCTTATAACTAACATTATG+TGG 0.531696 6_1:+12127838 Msa0875480:CDS
AAATTGTTCGCCTTCAACCA+CGG 0.532190 6_1:-12127307 None:intergenic
ATATCGGCTTCTTTCAATGC+CGG 0.532373 6_1:-12127480 None:intergenic
AAAGTGTAGCACAAACCAAA+AGG 0.534473 6_1:-12125424 None:intergenic
GCAGACGAAGAGCTTGGAGA+TGG 0.537228 6_1:+12126944 Msa0875480:CDS
AACTCAAAGAAGAAAAGAAG+TGG 0.537966 6_1:+12126713 Msa0875480:CDS
TTGGAAAGGAGCAGCAGAGA+TGG 0.539480 6_1:+12126778 Msa0875480:CDS
AACTCTTCAATTCAAAGGTG+AGG 0.539506 6_1:+12127905 Msa0875480:CDS
CTCTCTGCATGTGAGACTAT+GGG 0.539612 6_1:+12126235 Msa0875480:CDS
TTAAGGATCCATGTCGTCCA+GGG 0.540918 6_1:+12127026 Msa0875480:CDS
GTAGTTGCTGTAACAGGAGA+TGG 0.541746 6_1:+12127444 Msa0875480:CDS
ACAGCTAATGGCAAACCCTC+AGG 0.545616 6_1:-12126151 None:intergenic
TTATTCAACCTTGTTTGCAA+AGG 0.545979 6_1:-12125926 None:intergenic
AAAGTCGCAGACGAAGAGCT+TGG 0.546151 6_1:+12126938 Msa0875480:CDS
CGGTTGGTATGAACACGACA+TGG 0.547674 6_1:+12125858 Msa0875480:CDS
CAAATTGATTTGGTTCGAAG+TGG 0.549306 6_1:+12125605 Msa0875480:CDS
ATTTGGTTCGAAGTGGTCGT+CGG 0.551230 6_1:+12125612 Msa0875480:CDS
GAAGATTGGTGATCAAGTAC+CGG 0.553519 6_1:+12125682 Msa0875480:CDS
AACATGGAATCAAAGAAGGT+TGG 0.557290 6_1:+12125468 Msa0875480:CDS
AAGCAACATGGAATCAAAGA+AGG 0.557387 6_1:+12125464 Msa0875480:CDS
ACCACGGTGAAAGATGGAAT+AGG 0.558812 6_1:-12125122 None:intergenic
CTCCTGTTACAGCAACTACA+TGG 0.559264 6_1:-12127440 None:intergenic
GGTGATCAAGTACCGGCTGA+TGG 0.561728 6_1:+12125689 Msa0875480:CDS
TTATTCAATGAAGAAAATGA+TGG 0.562067 6_1:+12126189 Msa0875480:CDS
GGTCTAGAGCCATTGGAAAA+GGG 0.568153 6_1:+12126467 Msa0875480:CDS
AAAACTATTGCACATTGGAA+AGG 0.568293 6_1:+12126764 Msa0875480:CDS
ATTAGTGCTTCAAGTTGTGA+TGG 0.571604 6_1:+12128088 Msa0875480:CDS
TGTTGTTGTTGCAATTCCTG+AGG 0.573357 6_1:+12126135 Msa0875480:CDS
GTGGAAGCTTGCCAACATGC+CGG 0.573699 6_1:+12127061 Msa0875480:CDS
AGATGGAACAAATGATGCAC+CGG 0.583689 6_1:+12127461 Msa0875480:CDS
ATTTCAACTAACAGTGAATG+TGG 0.583772 6_1:+12127644 Msa0875480:CDS
ACTCACTTTGAATCAGATGA+AGG 0.584042 6_1:+12126427 Msa0875480:CDS
TATTGATTCGATATTTCACC+GGG 0.584900 6_1:+12126008 Msa0875480:CDS
TACTTCACCGGCTGAAACCG+CGG 0.586833 6_1:-12127691 None:intergenic
ACAACAAAACTATTGCACAT+TGG 0.588164 6_1:+12126759 Msa0875480:CDS
TGACATTCACACCGGCATGT+TGG 0.590504 6_1:-12127072 None:intergenic
ATGTGTTCAAGATACTATGA+TGG 0.592425 6_1:+12126809 Msa0875480:CDS
TCGGGGACAAAAGTTGTCGA+TGG 0.594676 6_1:+12125812 Msa0875480:CDS
GGTTGGTATGAACACGACAT+GGG 0.607578 6_1:+12125859 Msa0875480:CDS
TCTACAAACAATCCATCAGC+CGG 0.619777 6_1:-12125701 None:intergenic
AATAAGCTAACATCATCGAT+CGG 0.622025 6_1:+12125944 Msa0875480:CDS
TGTTATCAATTTCGTAGCCG+CGG 0.628690 6_1:+12127674 Msa0875480:CDS
TGTTTAATGAGTTTAATGCA+AGG 0.630387 6_1:+12127994 Msa0875480:CDS
GGCTTTGGTATCAAGCAACA+TGG 0.632329 6_1:+12125452 Msa0875480:CDS
AGATGGAGACAATAACAAGA+TGG 0.640541 6_1:+12126961 Msa0875480:CDS
AAAGAAGGTTGGTATGATGG+TGG 0.658285 6_1:+12125479 Msa0875480:CDS
ACCTATTCCATCTTTCACCG+TGG 0.659343 6_1:+12125121 Msa0875480:CDS
TTATAACTAACATTATGTGG+AGG 0.663994 6_1:+12127841 Msa0875480:CDS
AGCGGAGTTAGAGAGTTCAA+CGG 0.664012 6_1:+12126046 Msa0875480:CDS
TGGAGACAATAACAAGATGG+TGG 0.664988 6_1:+12126964 Msa0875480:CDS
TCGTCCAGGGGTGAAGAAAG+CGG 0.665154 6_1:+12127039 Msa0875480:CDS
TAAGGATCCATGTCGTCCAG+GGG 0.675223 6_1:+12127027 Msa0875480:CDS
TCCAGGGGTGAAGAAAGCGG+TGG 0.675734 6_1:+12127042 Msa0875480:CDS
AAGCATTATTCAAGGTATGG+CGG 0.676719 6_1:+12126880 Msa0875480:CDS
AATGATGGCTGATCAAGCAA+TGG 0.680846 6_1:+12126204 Msa0875480:CDS
GTTGGTATGAACACGACATG+GGG 0.684579 6_1:+12125860 Msa0875480:CDS
TGATCAATGGTAAAAGAGTG+TGG 0.699257 6_1:-12125158 None:intergenic
GTTGCACTCAATACAACTGG+AGG 0.710232 6_1:+12126539 Msa0875480:CDS
GGGAACACAAAGAACGATAG+CGG 0.711042 6_1:+12126028 Msa0875480:CDS
GACACACTTCAAAATCATGG+TGG 0.722727 6_1:+12125218 Msa0875480:CDS
AAAGCTATAGCATTTGAATG+CGG 0.727776 6_1:+12127252 Msa0875480:CDS
TGAGGACACAGATGAAACCG+TGG 0.741833 6_1:+12127290 Msa0875480:CDS
AAATAACGATGAAAACAGCG+AGG 0.747712 6_1:-12125511 None:intergenic
ATCGAATCAATAGAACAACA+AGG 0.750277 6_1:-12125997 None:intergenic
TGGTGAATTGAAATCAACCA+CGG 0.764909 6_1:-12125138 None:intergenic
GATAAGCAATGACATCGACG+AGG 0.796368 6_1:+12125898 Msa0875480:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAATGAATAAAACTTTTAGA+AGG - chr6_1:12125368-12125387 None:intergenic 15.0%
!!! TTTGATATTTGATTTGTAAT+AGG + chr6_1:12126401-12126420 Msa0875480:intron 15.0%
!!! TGTAACAATTTTAATCCTTT+TGG + chr6_1:12125409-12125428 Msa0875480:CDS 20.0%
!! TCAATATTTGATATTGTTGT+TGG + chr6_1:12125644-12125663 Msa0875480:CDS 20.0%
!! TTATTCAATGAAGAAAATGA+TGG + chr6_1:12126189-12126208 Msa0875480:CDS 20.0%
!! TTAAGAAAAAAGTTGTAACA+AGG + chr6_1:12126368-12126387 Msa0875480:intron 20.0%
!! ACAATGATTTAACATTGTTA+GGG + chr6_1:12126993-12127012 Msa0875480:CDS 20.0%
!!! GTTCAATGTTTAAAACAAAA+AGG + chr6_1:12127417-12127436 Msa0875480:CDS 20.0%
!!! TATAGTAACAGTTTTAAACT+GGG + chr6_1:12127584-12127603 Msa0875480:CDS 20.0%
!! AATTTGATTATGGATACATT+AGG + chr6_1:12127744-12127763 Msa0875480:CDS 20.0%
!! GAGTTAACAATATTACTATT+TGG - chr6_1:12127890-12127909 None:intergenic 20.0%
!!! ATTTAGAAGCAAATTGTTTT+TGG + chr6_1:12128049-12128068 Msa0875480:CDS 20.0%
!!! TTTAGAAGCAAATTGTTTTT+GGG + chr6_1:12128050-12128069 Msa0875480:CDS 20.0%
!!! AAATTGTTTTTGGGAATTAT+TGG + chr6_1:12128059-12128078 Msa0875480:CDS 20.0%
!! ATACTCAAAAAATCAAGAAA+TGG - chr6_1:12128242-12128261 None:intergenic 20.0%
! TCATGAAAATCTATTGTTCT+AGG + chr6_1:12125060-12125079 Msa0875480:CDS 25.0%
! CATGAAAATCTATTGTTCTA+GGG + chr6_1:12125061-12125080 Msa0875480:CDS 25.0%
!! AAAAGTGATGATCATGATTT+TGG + chr6_1:12125290-12125309 Msa0875480:CDS 25.0%
!!! TGAATAAAACTTTTAGAAGG+TGG - chr6_1:12125365-12125384 None:intergenic 25.0%
!!! TTTTGTTGTTGAAGCTTTTA+AGG + chr6_1:12125385-12125404 Msa0875480:CDS 25.0%
! CAATGACATTCAAATTGATT+TGG + chr6_1:12125595-12125614 Msa0875480:CDS 25.0%
!!! TTTTCATCCTTTTTTGCTTT+CGG + chr6_1:12125793-12125812 Msa0875480:CDS 25.0%
! AGAAAAAGCAATACTATCTT+GGG + chr6_1:12126619-12126638 Msa0875480:CDS 25.0%
!! TTTGGAATTGAAAATGGATA+TGG + chr6_1:12126646-12126665 Msa0875480:CDS 25.0%
!!! AAATTCGAAAGCATTATTCA+AGG + chr6_1:12126872-12126891 Msa0875480:CDS 25.0%
! GACAATGATTTAACATTGTT+AGG + chr6_1:12126992-12127011 Msa0875480:CDS 25.0%
! CACGTATGTATAAATAATAG+AGG - chr6_1:12127172-12127191 None:intergenic 25.0%
!!! CTATAGTAACAGTTTTAAAC+TGG + chr6_1:12127583-12127602 Msa0875480:CDS 25.0%
!!! ATAGTAACAGTTTTAAACTG+GGG + chr6_1:12127585-12127604 Msa0875480:CDS 25.0%
! AATAATTGAACTGCTGTTAA+TGG - chr6_1:12127717-12127736 None:intergenic 25.0%
! TAACAGCAGTTCAATTATTA+TGG + chr6_1:12127718-12127737 Msa0875480:CDS 25.0%
! AACAGCAGTTCAATTATTAT+GGG + chr6_1:12127719-12127738 Msa0875480:CDS 25.0%
! ATTATGGGTGAATTTGATTA+TGG + chr6_1:12127734-12127753 Msa0875480:CDS 25.0%
! AAAACCTACTAAGGAATTAA+TGG + chr6_1:12127788-12127807 Msa0875480:CDS 25.0%
! TTATCCATTAATTCCTTAGT+AGG - chr6_1:12127795-12127814 None:intergenic 25.0%
!! TTAATGGATAAAAAACCAGT+TGG + chr6_1:12127804-12127823 Msa0875480:CDS 25.0%
! CACATAATGTTAGTTATAAG+AGG - chr6_1:12127840-12127859 None:intergenic 25.0%
! CTCTTATAACTAACATTATG+TGG + chr6_1:12127838-12127857 Msa0875480:CDS 25.0%
! TTATAACTAACATTATGTGG+AGG + chr6_1:12127841-12127860 Msa0875480:CDS 25.0%
! TTGTTAACTCTTCAATTCAA+AGG + chr6_1:12127900-12127919 Msa0875480:CDS 25.0%
! TGTTTAATGAGTTTAATGCA+AGG + chr6_1:12127994-12128013 Msa0875480:CDS 25.0%
!!! AGAAGAAGAATGTTTTTGAA+GGG + chr6_1:12128024-12128043 Msa0875480:CDS 25.0%
!!! AGAGAATGGATTATTTGTAT+TGG + chr6_1:12128155-12128174 Msa0875480:CDS 25.0%
!!! TGGATTATTTGTATTGGTTT+TGG + chr6_1:12128161-12128180 Msa0875480:CDS 25.0%
! AACTTAACAACAAAACCAAT+TGG - chr6_1:12128200-12128219 None:intergenic 25.0%
TATGAGAGTTTCTTGATCAA+TGG - chr6_1:12125174-12125193 None:intergenic 30.0%
CTTAAAACCAACATTGAGTT+TGG + chr6_1:12125263-12125282 Msa0875480:CDS 30.0%
!! ATTTTGGAGACATTGCAATT+AGG + chr6_1:12125306-12125325 Msa0875480:CDS 30.0%
!!! AGGTGGTTTTTTGTAATTGT+TGG - chr6_1:12125348-12125367 None:intergenic 30.0%
! GATGTTGTTTGTTTGAAGAT+TGG + chr6_1:12125668-12125687 Msa0875480:CDS 30.0%
!!! TTTCATCCTTTTTTGCTTTC+GGG + chr6_1:12125794-12125813 Msa0875480:CDS 30.0%
! TGCAAAAATGCTTGTTACAT+CGG + chr6_1:12125838-12125857 Msa0875480:CDS 30.0%
! TTATTCAACCTTGTTTGCAA+AGG - chr6_1:12125929-12125948 None:intergenic 30.0%
AATAAGCTAACATCATCGAT+CGG + chr6_1:12125944-12125963 Msa0875480:CDS 30.0%
ATCGAATCAATAGAACAACA+AGG - chr6_1:12126000-12126019 None:intergenic 30.0%
!! CTATTGATTCGATATTTCAC+CGG + chr6_1:12126007-12126026 Msa0875480:CDS 30.0%
!! TATTGATTCGATATTTCACC+GGG + chr6_1:12126008-12126027 Msa0875480:CDS 30.0%
GATGTGATGAATGCAATTAT+TGG + chr6_1:12126088-12126107 Msa0875480:CDS 30.0%
! TTCAATAGTACCTGTTTTGT+CGG - chr6_1:12126281-12126300 None:intergenic 30.0%
TTGATCAATTGAAGAACAGA+TGG - chr6_1:12126512-12126531 None:intergenic 30.0%
GTTCTTCAATTGATCAAAGA+AGG + chr6_1:12126515-12126534 Msa0875480:CDS 30.0%
!!! GATAGTATTGCTTTTTCTGT+TGG - chr6_1:12126617-12126636 None:intergenic 30.0%
CAGAAAAAGCAATACTATCT+TGG + chr6_1:12126618-12126637 Msa0875480:CDS 30.0%
AACTCAAAGAAGAAAAGAAG+TGG + chr6_1:12126713-12126732 Msa0875480:CDS 30.0%
ACAACAAAACTATTGCACAT+TGG + chr6_1:12126759-12126778 Msa0875480:CDS 30.0%
AAAACTATTGCACATTGGAA+AGG + chr6_1:12126764-12126783 Msa0875480:CDS 30.0%
ATGTGTTCAAGATACTATGA+TGG + chr6_1:12126809-12126828 Msa0875480:CDS 30.0%
TCAAGATACTATGATGGTTA+TGG + chr6_1:12126815-12126834 Msa0875480:CDS 30.0%
!! AATCATTTTGACATTCACAC+CGG - chr6_1:12127083-12127102 None:intergenic 30.0%
GTGAATGTCAAAATGATTAC+AGG + chr6_1:12127085-12127104 Msa0875480:CDS 30.0%
CTATAATCAGAGATAGAGTT+CGG - chr6_1:12127212-12127231 None:intergenic 30.0%
AAAGCTATAGCATTTGAATG+CGG + chr6_1:12127252-12127271 Msa0875480:CDS 30.0%
!! ACTTTTTCTAATCTCTCTTC+GGG - chr6_1:12127345-12127364 None:intergenic 30.0%
!! GACTTTTTCTAATCTCTCTT+CGG - chr6_1:12127346-12127365 None:intergenic 30.0%
AGTCGAAAAAATATCTGTGA+TGG + chr6_1:12127362-12127381 Msa0875480:CDS 30.0%
TCCATTTGACAAACTTCTAA+TGG + chr6_1:12127395-12127414 Msa0875480:CDS 30.0%
ACCATTAGAAGTTTGTCAAA+TGG - chr6_1:12127399-12127418 None:intergenic 30.0%
ATTTCAACTAACAGTGAATG+TGG + chr6_1:12127644-12127663 Msa0875480:CDS 30.0%
! TTCAAAGGTGAGGATATTTT+TGG + chr6_1:12127915-12127934 Msa0875480:CDS 30.0%
!!! TATTTTTGGTGTGACATCAA+AGG + chr6_1:12127929-12127948 Msa0875480:CDS 30.0%
TGAGTTTAATGCAAGGAAAT+TGG + chr6_1:12128001-12128020 Msa0875480:CDS 30.0%
!! GAGAAGAAGAATGTTTTTGA+AGG + chr6_1:12128023-12128042 Msa0875480:CDS 30.0%
! AGAAATGGTTTATTTGAGAC+AGG - chr6_1:12128227-12128246 None:intergenic 30.0%
!!! TGTGTGTGATTGGTGTTTTT+TGG - chr6_1:12125017-12125036 None:intergenic 35.0%
!! TCTTTTGTTGTGTGTGTGAT+TGG - chr6_1:12125027-12125046 None:intergenic 35.0%
ATCACACACACAACAAAAGA+TGG + chr6_1:12125027-12125046 Msa0875480:CDS 35.0%
!!! AGGTGTGATTTTTGGTTTCT+TGG - chr6_1:12125105-12125124 None:intergenic 35.0%
! GATGGAATAGGTGTGATTTT+TGG - chr6_1:12125113-12125132 None:intergenic 35.0%
TGGTGAATTGAAATCAACCA+CGG - chr6_1:12125141-12125160 None:intergenic 35.0%
TGATCAATGGTAAAAGAGTG+TGG - chr6_1:12125161-12125180 None:intergenic 35.0%
ATCGACACACTTCAAAATCA+TGG + chr6_1:12125215-12125234 Msa0875480:CDS 35.0%
TTTGACACCAAACTCAATGT+TGG - chr6_1:12125273-12125292 None:intergenic 35.0%
GCAATTAGGAAACAAGTGTT+TGG + chr6_1:12125320-12125339 Msa0875480:CDS 35.0%
AAAGTGTAGCACAAACCAAA+AGG - chr6_1:12125427-12125446 None:intergenic 35.0%
AAGCAACATGGAATCAAAGA+AGG + chr6_1:12125464-12125483 Msa0875480:CDS 35.0%
AACATGGAATCAAAGAAGGT+TGG + chr6_1:12125468-12125487 Msa0875480:CDS 35.0%
!! ATCAAAGAAGGTTGGTATGA+TGG + chr6_1:12125476-12125495 Msa0875480:CDS 35.0%
AAATAACGATGAAAACAGCG+AGG - chr6_1:12125514-12125533 None:intergenic 35.0%
!! CAAATTGATTTGGTTCGAAG+TGG + chr6_1:12125605-12125624 Msa0875480:CDS 35.0%
!!! TTCATCCTTTTTTGCTTTCG+GGG + chr6_1:12125795-12125814 Msa0875480:CDS 35.0%
! AAAATGCTTGTTACATCGGT+TGG + chr6_1:12125842-12125861 Msa0875480:CDS 35.0%
ACTCACTTTGAATCAGATGA+AGG + chr6_1:12126427-12126446 Msa0875480:CDS 35.0%
TCACAAATCGAAATCAGGTT+CGG + chr6_1:12126565-12126584 Msa0875480:CDS 35.0%
!! GATTCTGAATTCGAGTTTTC+AGG + chr6_1:12126587-12126606 Msa0875480:CDS 35.0%
! AATACTATCTTGGGCTGTTT+TGG + chr6_1:12126628-12126647 Msa0875480:CDS 35.0%
!!! GGCTGTTTTGGAATTGAAAA+TGG + chr6_1:12126640-12126659 Msa0875480:CDS 35.0%
!! CGAAAGCATTATTCAAGGTA+TGG + chr6_1:12126877-12126896 Msa0875480:CDS 35.0%
AAGCATTATTCAAGGTATGG+CGG + chr6_1:12126880-12126899 Msa0875480:CDS 35.0%
AGATGGAGACAATAACAAGA+TGG + chr6_1:12126961-12126980 Msa0875480:CDS 35.0%
TTAACATTGTTAGGGCTTGT+CGG + chr6_1:12127001-12127020 Msa0875480:CDS 35.0%
CGAACTCTATCTCTGATTAT+AGG + chr6_1:12127210-12127229 Msa0875480:intron 35.0%
TATGGATACATTAGGTGCAT+TGG + chr6_1:12127752-12127771 Msa0875480:CDS 35.0%
TGCAACTGAAAAACCTACTA+AGG + chr6_1:12127779-12127798 Msa0875480:CDS 35.0%
AACTCTTCAATTCAAAGGTG+AGG + chr6_1:12127905-12127924 Msa0875480:CDS 35.0%
!! ATTAGTGCTTCAAGTTGTGA+TGG + chr6_1:12128088-12128107 Msa0875480:CDS 35.0%
!! GAGTTTTTGAAGAAGTTTGC+TGG + chr6_1:12128113-12128132 Msa0875480:CDS 35.0%
AAAGGTTGAATTGGAGAGAA+TGG + chr6_1:12128141-12128160 Msa0875480:CDS 35.0%
!!! TTGGTTTTGGTGCTATTTCT+TGG + chr6_1:12128174-12128193 Msa0875480:CDS 35.0%
AAATCAACCACGGTGAAAGA+TGG - chr6_1:12125131-12125150 None:intergenic 40.0%
GACACACTTCAAAATCATGG+TGG + chr6_1:12125218-12125237 Msa0875480:CDS 40.0%
! CAAAATCATGGTGGAGTTGA+AGG + chr6_1:12125227-12125246 Msa0875480:CDS 40.0%
GTTTGTGCTACACTTTCACT+TGG + chr6_1:12125431-12125450 Msa0875480:CDS 40.0%
!! AAAGAAGGTTGGTATGATGG+TGG + chr6_1:12125479-12125498 Msa0875480:CDS 40.0%
! GAAGATTGGTGATCAAGTAC+CGG + chr6_1:12125682-12125701 Msa0875480:CDS 40.0%
TCTACAAACAATCCATCAGC+CGG - chr6_1:12125704-12125723 None:intergenic 40.0%
!! GCTGATGGATTGTTTGTAGA+TGG + chr6_1:12125704-12125723 Msa0875480:CDS 40.0%
TTTGTCCCCGAAAGCAAAAA+AGG - chr6_1:12125803-12125822 None:intergenic 40.0%
AGGAAACACCTTTGCAAACA+AGG + chr6_1:12125918-12125937 Msa0875480:CDS 40.0%
ACATCATCGATCGGAAAAGT+TGG + chr6_1:12125953-12125972 Msa0875480:CDS 40.0%
! ATCGATCGGAAAAGTTGGTT+TGG + chr6_1:12125958-12125977 Msa0875480:CDS 40.0%
! TGTTGTTGTTGCAATTCCTG+AGG + chr6_1:12126135-12126154 Msa0875480:CDS 40.0%
! GTTGTTGTTGCAATTCCTGA+GGG + chr6_1:12126136-12126155 Msa0875480:CDS 40.0%
AGTGTCAATGTCACAGCTAA+TGG - chr6_1:12126166-12126185 None:intergenic 40.0%
AATGATGGCTGATCAAGCAA+TGG + chr6_1:12126204-12126223 Msa0875480:CDS 40.0%
! ACTATTTGCACCGACAAAAC+AGG + chr6_1:12126268-12126287 Msa0875480:CDS 40.0%
! AGATGAAGGTGACGAAGTTT+TGG + chr6_1:12126441-12126460 Msa0875480:CDS 40.0%
! GAATATGCACCCTTTTCCAA+TGG - chr6_1:12126479-12126498 None:intergenic 40.0%
GGTGTTCACAAATCGAAATC+AGG + chr6_1:12126560-12126579 Msa0875480:CDS 40.0%
!!! GAAGTGGAGTTTTGTTGAGA+AGG + chr6_1:12126729-12126748 Msa0875480:CDS 40.0%
TGGAGACAATAACAAGATGG+TGG + chr6_1:12126964-12126983 Msa0875480:CDS 40.0%
GTTTCATCTGTGTCCTCATT+AGG - chr6_1:12127288-12127307 None:intergenic 40.0%
AAATTGTTCGCCTTCAACCA+CGG - chr6_1:12127310-12127329 None:intergenic 40.0%
AGATGGAACAAATGATGCAC+CGG + chr6_1:12127461-12127480 Msa0875480:CDS 40.0%
!! ATATCGGCTTCTTTCAATGC+CGG - chr6_1:12127483-12127502 None:intergenic 40.0%
GCATTGAAAGAAGCCGATAT+CGG + chr6_1:12127483-12127502 Msa0875480:CDS 40.0%
TCCCATTGAAAGACCGATAT+CGG - chr6_1:12127499-12127518 None:intergenic 40.0%
GGTCTTTCAATGGGAATTCA+AGG + chr6_1:12127504-12127523 Msa0875480:CDS 40.0%
TGTTATCAATTTCGTAGCCG+CGG + chr6_1:12127674-12127693 Msa0875480:CDS 40.0%
TGCTGTTAATGGTACTTCAC+CGG - chr6_1:12127706-12127725 None:intergenic 40.0%
!! AGAAGTTTGCTGGTACAGAA+AGG + chr6_1:12128123-12128142 Msa0875480:CDS 40.0%
CTGGTACAGAAAGGTTGAAT+TGG + chr6_1:12128132-12128151 Msa0875480:CDS 40.0%
ACCTATTCCATCTTTCACCG+TGG + chr6_1:12125121-12125140 Msa0875480:CDS 45.0%
ACCACGGTGAAAGATGGAAT+AGG - chr6_1:12125125-12125144 None:intergenic 45.0%
GCTACACTTTCACTTGGCTT+TGG + chr6_1:12125437-12125456 Msa0875480:CDS 45.0%
! GGCTTTGGTATCAAGCAACA+TGG + chr6_1:12125452-12125471 Msa0875480:CDS 45.0%
! ATTTGGTTCGAAGTGGTCGT+CGG + chr6_1:12125612-12125631 Msa0875480:CDS 45.0%
! GTTGATGAATCGAGCATGAC+AGG + chr6_1:12125740-12125759 Msa0875480:CDS 45.0%
! GGTTGGTATGAACACGACAT+GGG + chr6_1:12125859-12125878 Msa0875480:CDS 45.0%
GTTGGTATGAACACGACATG+GGG + chr6_1:12125860-12125879 Msa0875480:CDS 45.0%
GATAAGCAATGACATCGACG+AGG + chr6_1:12125898-12125917 Msa0875480:CDS 45.0%
!! CGGAAAAGTTGGTTTGGTTG+TGG + chr6_1:12125964-12125983 Msa0875480:CDS 45.0%
GCTATCGTTCTTTGTGTTCC+CGG - chr6_1:12126029-12126048 None:intergenic 45.0%
GGGAACACAAAGAACGATAG+CGG + chr6_1:12126028-12126047 Msa0875480:CDS 45.0%
AGCGGAGTTAGAGAGTTCAA+CGG + chr6_1:12126046-12126065 Msa0875480:CDS 45.0%
ACTCTCTGCATGTGAGACTA+TGG + chr6_1:12126234-12126253 Msa0875480:CDS 45.0%
CTCTCTGCATGTGAGACTAT+GGG + chr6_1:12126235-12126254 Msa0875480:CDS 45.0%
!!! AAGGTGACGAAGTTTTGGCT+TGG + chr6_1:12126446-12126465 Msa0875480:CDS 45.0%
! TGGTCTAGAGCCATTGGAAA+AGG + chr6_1:12126466-12126485 Msa0875480:CDS 45.0%
! GGTCTAGAGCCATTGGAAAA+GGG + chr6_1:12126467-12126486 Msa0875480:CDS 45.0%
GGAGTTGCACTCAATACAAC+TGG + chr6_1:12126536-12126555 Msa0875480:CDS 45.0%
GTTGCACTCAATACAACTGG+AGG + chr6_1:12126539-12126558 Msa0875480:CDS 45.0%
GTTAGGGCTTGTCGGTATTA+AGG + chr6_1:12127009-12127028 Msa0875480:CDS 45.0%
ATTAAGGATCCATGTCGTCC+AGG + chr6_1:12127025-12127044 Msa0875480:CDS 45.0%
TTAAGGATCCATGTCGTCCA+GGG + chr6_1:12127026-12127045 Msa0875480:CDS 45.0%
CGGAATTCTCCAACCTAATG+AGG + chr6_1:12127272-12127291 Msa0875480:CDS 45.0%
CATCTGTGTCCTCATTAGGT+TGG - chr6_1:12127284-12127303 None:intergenic 45.0%
ACAGATGAAACCGTGGTTGA+AGG + chr6_1:12127297-12127316 Msa0875480:CDS 45.0%
CTCCTGTTACAGCAACTACA+TGG - chr6_1:12127443-12127462 None:intergenic 45.0%
GTAGTTGCTGTAACAGGAGA+TGG + chr6_1:12127444-12127463 Msa0875480:CDS 45.0%
AGCCGATATCGGTCTTTCAA+TGG + chr6_1:12127494-12127513 Msa0875480:CDS 45.0%
GCCGATATCGGTCTTTCAAT+GGG + chr6_1:12127495-12127514 Msa0875480:CDS 45.0%
!! AGAGGCTTTGTTCTACCAAC+TGG - chr6_1:12127822-12127841 None:intergenic 45.0%
!! GGTGCTATTTCTTGGCCAAT+TGG + chr6_1:12128182-12128201 Msa0875480:CDS 45.0%
! TCGAAGTGGTCGTCGGTTAA+AGG + chr6_1:12125619-12125638 Msa0875480:CDS 50.0%
TCGGGGACAAAAGTTGTCGA+TGG + chr6_1:12125812-12125831 Msa0875480:CDS 50.0%
! CGGTTGGTATGAACACGACA+TGG + chr6_1:12125858-12125877 Msa0875480:CDS 50.0%
ACAGCTAATGGCAAACCCTC+AGG - chr6_1:12126154-12126173 None:intergenic 50.0%
!! TTGGCTTGGTCTAGAGCCAT+TGG + chr6_1:12126460-12126479 Msa0875480:CDS 50.0%
TTGGAAAGGAGCAGCAGAGA+TGG + chr6_1:12126778-12126797 Msa0875480:CDS 50.0%
AAAGTCGCAGACGAAGAGCT+TGG + chr6_1:12126938-12126957 Msa0875480:CDS 50.0%
TAAGGATCCATGTCGTCCAG+GGG + chr6_1:12127027-12127046 Msa0875480:CDS 50.0%
TGACATTCACACCGGCATGT+TGG - chr6_1:12127075-12127094 None:intergenic 50.0%
TGAGGACACAGATGAAACCG+TGG + chr6_1:12127290-12127309 Msa0875480:CDS 50.0%
GGCCATGTAGTTGCTGTAAC+AGG + chr6_1:12127438-12127457 Msa0875480:CDS 50.0%
!! GGTGATCAAGTACCGGCTGA+TGG + chr6_1:12125689-12125708 Msa0875480:CDS 55.0%
GCAGACGAAGAGCTTGGAGA+TGG + chr6_1:12126944-12126963 Msa0875480:CDS 55.0%
TTCTTCACCCCTGGACGACA+TGG - chr6_1:12127037-12127056 None:intergenic 55.0%
TCGTCCAGGGGTGAAGAAAG+CGG + chr6_1:12127039-12127058 Msa0875480:CDS 55.0%
GTGGAAGCTTGCCAACATGC+CGG + chr6_1:12127061-12127080 Msa0875480:CDS 55.0%
! TACTTCACCGGCTGAAACCG+CGG - chr6_1:12127694-12127713 None:intergenic 55.0%
TCCAGGGGTGAAGAAAGCGG+TGG + chr6_1:12127042-12127061 Msa0875480:CDS 60.0%
TCCACCGCTTTCTTCACCCC+TGG - chr6_1:12127046-12127065 None:intergenic 60.0%
TTCGTAGCCGCGGTTTCAGC+CGG + chr6_1:12127684-12127703 Msa0875480:CDS 60.0%
Chromosome Type Strat End Strand Name
chr6_1 gene 12124960 12128274 12124960 ID=Msa0875480;Name=Msa0875480
chr6_1 mRNA 12124960 12128274 12124960 ID=Msa0875480-mRNA-1;Parent=Msa0875480;Name=Msa0875480-mRNA-1;_AED=0.01;_eAED=0.01;_QI=0|1|0|1|1|1|3|0|1018
chr6_1 exon 12124960 12126289 12124960 ID=Msa0875480-mRNA-1:exon:3657;Parent=Msa0875480-mRNA-1
chr6_1 exon 12126423 12127106 12126423 ID=Msa0875480-mRNA-1:exon:3658;Parent=Msa0875480-mRNA-1
chr6_1 exon 12127232 12128274 12127232 ID=Msa0875480-mRNA-1:exon:3659;Parent=Msa0875480-mRNA-1
chr6_1 CDS 12124960 12126289 12124960 ID=Msa0875480-mRNA-1:cds;Parent=Msa0875480-mRNA-1
chr6_1 CDS 12126423 12127106 12126423 ID=Msa0875480-mRNA-1:cds;Parent=Msa0875480-mRNA-1
chr6_1 CDS 12127232 12128274 12127232 ID=Msa0875480-mRNA-1:cds;Parent=Msa0875480-mRNA-1
Gene Sequence

>Msa0875480

ATGTCGATGACATTTTTCACAAACATGAACGACATTGAGACACTTCTCAATGCACCAAAAAACACCAATCACACACACAACAAAAGATGGCACAATGCTTTCATGAAAATCTATTGTTCTAGGGCTTTCATGTCACATTTTACCAAGAAACCAAAAATCACACCTATTCCATCTTTCACCGTGGTTGATTTCAATTCACCACACTCTTTTACCATTGATCAAGAAACTCTCATAGATATTGTCAAAGAGAAAAACATCGACACACTTCAAAATCATGGTGGAGTTGAAGGTGTTGCTTCATCACTTAAAACCAACATTGAGTTTGGTGTCAAAAGTGATGATCATGATTTTGGAGACATTGCAATTAGGAAACAAGTGTTTGGTTCCAACAATTACAAAAAACCACCTTCTAAAAGTTTTATTCATTTTGTTGTTGAAGCTTTTAAGGATGTAACAATTTTAATCCTTTTGGTTTGTGCTACACTTTCACTTGGCTTTGGTATCAAGCAACATGGAATCAAAGAAGGTTGGTATGATGGTGGCAGCATTTTCCTCGCTGTTTTCATCGTTATTTCGATGTCATCAATAAGCAACTTCAAACAAAACAAACAATTTGATAAATTGTCTCAAGTTAGCAATGACATTCAAATTGATTTGGTTCGAAGTGGTCGTCGGTTAAAGGTATCAATATTTGATATTGTTGTTGGTGATGTTGTTTGTTTGAAGATTGGTGATCAAGTACCGGCTGATGGATTGTTTGTAGATGGACATTCGTTGAGAGTTGATGAATCGAGCATGACAGGTGAGAGCGATCATGTAGAGATAAATCGAAATTTTCATCCTTTTTTGCTTTCGGGGACAAAAGTTGTCGATGGATATGCAAAAATGCTTGTTACATCGGTTGGTATGAACACGACATGGGGACAAATGATGAGTTCGATAAGCAATGACATCGACGAGGAAACACCTTTGCAAACAAGGTTGAATAAGCTAACATCATCGATCGGAAAAGTTGGTTTGGTTGTGGCATTTTTAGTCCTTGTTGTTCTATTGATTCGATATTTCACCGGGAACACAAAGAACGATAGCGGAGTTAGAGAGTTCAACGGTAGAAAGACTAGTTTTGATGATGTGATGAATGCAATTATTGGAATTATTGCTGATGCTGTTACTATTGTTGTTGTTGCAATTCCTGAGGGTTTGCCATTAGCTGTGACATTGACACTTGCTTATTCAATGAAGAAAATGATGGCTGATCAAGCAATGGTGAGAAAACTCTCTGCATGTGAGACTATGGGATCTGCTACTACTATTTGCACCGACAAAACAGGTACACTCACTTTGAATCAGATGAAGGTGACGAAGTTTTGGCTTGGTCTAGAGCCATTGGAAAAGGGTGCATATTCAAATGTTGATCCATCTGTTCTTCAATTGATCAAAGAAGGAGTTGCACTCAATACAACTGGAGGTGTTCACAAATCGAAATCAGGTTCGGATTCTGAATTCGAGTTTTCAGGAAGTCCAACAGAAAAAGCAATACTATCTTGGGCTGTTTTGGAATTGAAAATGGATATGGAGCACTTGACAAAAAGTTGTTCTATTATTCAAGTTGAGACTTTCAACTCAAAGAAGAAAAGAAGTGGAGTTTTGTTGAGAAGGAATGTTGACAACAAAACTATTGCACATTGGAAAGGAGCAGCAGAGATGGTTCTAAGAATGTGTTCAAGATACTATGATGGTTATGGAATTTTGAAAGATCTTGACAATGAAAGCATGTCAAAATTCGAAAGCATTATTCAAGGTATGGCGGCTAGTAGTCTTCGTTGCATCGCTTTAGCATATACAAAAGTCGCAGACGAAGAGCTTGGAGATGGAGACAATAACAAGATGGTGGTAAAAGACAATGATTTAACATTGTTAGGGCTTGTCGGTATTAAGGATCCATGTCGTCCAGGGGTGAAGAAAGCGGTGGAAGCTTGCCAACATGCCGGTGTGAATGTCAAAATGATTACAGGTGACAATGTTTTCACTGCGAAAGCTATAGCATTTGAATGCGGAATTCTCCAACCTAATGAGGACACAGATGAAACCGTGGTTGAAGGCGAACAATTTCGCAACTTCACACCCGAAGAGAGATTAGAAAAAGTCGAAAAAATATCTGTGATGGCAAGATCTTCTCCATTTGACAAACTTCTAATGGTTCAATGTTTAAAACAAAAAGGCCATGTAGTTGCTGTAACAGGAGATGGAACAAATGATGCACCGGCATTGAAAGAAGCCGATATCGGTCTTTCAATGGGAATTCAAGGTACAGAAGTTGCAAAAGAGAGTTCAGATATTGTTATATTAGATGACAATTTTGCATCTATAGTAACAGTTTTAAACTGGGGAAGATGTGTTTACAACAACATTCAAAAATTCATTCAATTTCAACTAACAGTGAATGTGGCAGCACTTGTTATCAATTTCGTAGCCGCGGTTTCAGCCGGTGAAGTACCATTAACAGCAGTTCAATTATTATGGGTGAATTTGATTATGGATACATTAGGTGCATTGGCTCTTGCAACTGAAAAACCTACTAAGGAATTAATGGATAAAAAACCAGTTGGTAGAACAAAGCCTCTTATAACTAACATTATGTGGAGGAATCTTGTGTCACAAGCTTTGTACCAAATAGTAATATTGTTAACTCTTCAATTCAAAGGTGAGGATATTTTTGGTGTGACATCAAAGGTAAATGACACATTGATATTTAATACATTTGTTCTATGTCAAGTGTTTAATGAGTTTAATGCAAGGAAATTGGAGAAGAAGAATGTTTTTGAAGGGATATTTAGAAGCAAATTGTTTTTGGGAATTATTGGTGTGACATTAGTGCTTCAAGTTGTGATGGTTGAGTTTTTGAAGAAGTTTGCTGGTACAGAAAGGTTGAATTGGAGAGAATGGATTATTTGTATTGGTTTTGGTGCTATTTCTTGGCCAATTGGTTTTGTTGTTAAGTTGATTCCTGTCTCAAATAAACCATTTCTTGATTTTTTGAGTATGAAGAAGACTTAG
Protein sequence

>Msa0875480

MSMTFFTNMNDIETLLNAPKNTNHTHNKRWHNAFMKIYCSRAFMSHFTKKPKITPIPSFTVVDFNSPHSFTIDQETLIDIVKEKNIDTLQNHGGVEGVASSLKTNIEFGVKSDDHDFGDIAIRKQVFGSNNYKKPPSKSFIHFVVEAFKDVTILILLVCATLSLGFGIKQHGIKEGWYDGGSIFLAVFIVISMSSISNFKQNKQFDKLSQVSNDIQIDLVRSGRRLKVSIFDIVVGDVVCLKIGDQVPADGLFVDGHSLRVDESSMTGESDHVEINRNFHPFLLSGTKVVDGYAKMLVTSVGMNTTWGQMMSSISNDIDEETPLQTRLNKLTSSIGKVGLVVAFLVLVVLLIRYFTGNTKNDSGVREFNGRKTSFDDVMNAIIGIIADAVTIVVVAIPEGLPLAVTLTLAYSMKKMMADQAMVRKLSACETMGSATTICTDKTGTLTLNQMKVTKFWLGLEPLEKGAYSNVDPSVLQLIKEGVALNTTGGVHKSKSGSDSEFEFSGSPTEKAILSWAVLELKMDMEHLTKSCSIIQVETFNSKKKRSGVLLRRNVDNKTIAHWKGAAEMVLRMCSRYYDGYGILKDLDNESMSKFESIIQGMAASSLRCIALAYTKVADEELGDGDNNKMVVKDNDLTLLGLVGIKDPCRPGVKKAVEACQHAGVNVKMITGDNVFTAKAIAFECGILQPNEDTDETVVEGEQFRNFTPEERLEKVEKISVMARSSPFDKLLMVQCLKQKGHVVAVTGDGTNDAPALKEADIGLSMGIQGTEVAKESSDIVILDDNFASIVTVLNWGRCVYNNIQKFIQFQLTVNVAALVINFVAAVSAGEVPLTAVQLLWVNLIMDTLGALALATEKPTKELMDKKPVGRTKPLITNIMWRNLVSQALYQIVILLTLQFKGEDIFGVTSKVNDTLIFNTFVLCQVFNEFNARKLEKKNVFEGIFRSKLFLGIIGVTLVLQVVMVEFLKKFAGTERLNWREWIICIGFGAISWPIGFVVKLIPVSNKPFLDFLSMKKT*