AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0187830


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0187830 MtrunA17_Chr2g0290131 91.646 407 29 2 1 407 1 402 0.0 730
Msa0187830 MtrunA17_Chr4g0076051 67.347 392 125 3 14 402 4 395 0.0 535
Msa0187830 MtrunA17_Chr2g0278181 69.608 306 91 2 99 402 1 306 1.86e-148 423
Msa0187830 MtrunA17_Chr7g0234191 41.935 403 214 10 5 402 49 436 4.42e-103 312
Msa0187830 MtrunA17_Chr3g0101961 40.054 367 204 8 29 389 21 377 1.80e-85 265
Msa0187830 MtrunA17_Chr5g0444651 35.294 391 223 14 10 383 12 389 3.83e-66 216
Msa0187830 MtrunA17_Chr5g0447771 33.509 379 227 8 40 401 64 434 1.07e-65 216
Msa0187830 MtrunA17_Chr8g0347591 32.343 303 186 8 80 379 91 377 1.00e-37 140
Msa0187830 MtrunA17_Chr7g0275621 31.034 261 155 7 137 391 143 384 6.36e-25 105
Msa0187830 MtrunA17_Chr8g0338731 28.947 190 128 4 8 197 7 189 6.18e-18 82.4
Msa0187830 MtrunA17_Chr7g0261921 40.777 103 60 1 99 200 1 103 5.42e-16 75.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0187830 AT5G47530.1 53.591 362 155 5 32 389 25 377 7.38e-143 412
Msa0187830 AT4G17280.1 50.630 397 181 7 9 400 10 396 1.33e-131 384
Msa0187830 AT5G35735.1 48.379 401 182 8 16 402 9 398 1.65e-119 353
Msa0187830 AT3G25290.1 43.478 391 195 12 19 395 13 391 1.21e-105 317
Msa0187830 AT3G25290.2 43.478 391 195 12 19 395 13 391 1.21e-105 317
Msa0187830 AT4G12980.1 43.005 386 197 9 18 390 13 388 5.45e-97 295
Msa0187830 AT3G59070.1 41.361 382 198 10 1 375 10 372 1.47e-83 263
Msa0187830 AT2G04850.1 34.565 379 219 10 40 399 29 397 1.15e-63 210
Msa0187830 AT5G48750.1 38.224 259 144 7 1 255 8 254 2.71e-53 178
Msa0187830 AT3G07570.1 37.278 169 98 2 212 380 207 367 5.18e-30 119
Msa0187830 AT3G61750.2 36.025 161 93 4 218 377 143 294 1.41e-24 103
Msa0187830 AT3G61750.1 36.025 161 93 4 218 377 220 371 2.11e-24 104
Msa0187830 AT3G07390.1 30.435 184 121 5 23 203 39 218 7.35e-18 83.6
Msa0187830 AT3G07390.2 44.737 76 39 1 32 107 48 120 1.97e-13 68.2
Msa0187830 AT4G18260.1 28.481 158 93 3 199 346 45 192 1.67e-11 65.1
Msa0187830 AT2G30890.1 26.471 170 115 3 216 380 54 218 3.62e-11 63.5

Find 124 sgRNAs with CRISPR-Local

Find 186 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TAGATATAGATACTGGATTT+TGG 0.220701 2_1:-2589644 Msa0187830:three_prime_UTR
AGCATCATCAACATCTTTAA+AGG 0.222620 2_1:-2589879 Msa0187830:CDS
ATGCAACAAAATATACAAAA+AGG 0.232567 2_1:+2589589 None:intergenic
TATAGAGAGTTGGTGGGTTT+GGG 0.254962 2_1:+2592279 None:intergenic
TTATAGAGAGTTGGTGGGTT+TGG 0.257611 2_1:+2592278 None:intergenic
CTACTACTTTGGTTCATCTT+TGG 0.263788 2_1:-2591643 Msa0187830:CDS
GCCTATATAGTTGGTGTTGC+TGG 0.268677 2_1:-2590763 Msa0187830:CDS
TACTCAATCTAAGGAGAGTT+TGG 0.289007 2_1:-2591564 Msa0187830:CDS
CAGCAGATCGCTACGATAAC+TGG 0.293780 2_1:-2589833 Msa0187830:CDS
ATTGATGAAGTATAAGCTTT+AGG 0.319882 2_1:+2591785 None:intergenic
CTTCTGCCTTGGAACCCTTC+AGG 0.326027 2_1:-2590662 Msa0187830:intron
GGAACAAATGGTAATGGATA+TGG 0.345134 2_1:-2589690 Msa0187830:CDS
CAAAGCTTGTGCTCCATTCA+TGG 0.345197 2_1:+2591835 None:intergenic
CTTTAAAGGGTTTGATGCCT+TGG 0.361855 2_1:-2589865 Msa0187830:CDS
TCAACATGGTTGTGAACTTA+AGG 0.366759 2_1:-2592132 Msa0187830:exon
TCCTGTTGGAACTACTACTT+TGG 0.373099 2_1:-2591654 Msa0187830:CDS
CATGAATGGAGCACAAGCTT+TGG 0.373312 2_1:-2591834 Msa0187830:CDS
GAGAGTTTGGATCTTCGTTC+TGG 0.374390 2_1:-2591551 Msa0187830:CDS
AAGTGAAGAGGTTGTGAGAT+TGG 0.376717 2_1:+2592234 None:intergenic
ATGGTAATGGATATGGTTCT+AGG 0.376964 2_1:-2589683 Msa0187830:CDS
GGGTGGCGTTGCTGTACTTT+TGG 0.394743 2_1:-2589778 Msa0187830:CDS
CTACTGGAACCTTTACCATT+GGG 0.394836 2_1:-2589928 Msa0187830:CDS
TAGTGCTAATACTCAATCTA+AGG 0.401924 2_1:-2591573 Msa0187830:CDS
CACTGGCATTATTGCAGCAT+TGG 0.406523 2_1:-2589799 Msa0187830:CDS
TGGCAAGATGGTGCTATGTC+TGG 0.406620 2_1:-2591623 Msa0187830:CDS
GCATCATCAACATCTTTAAA+GGG 0.412669 2_1:-2589878 Msa0187830:CDS
CGTTCTGGTGCTTCTGAACA+AGG 0.418467 2_1:-2591536 Msa0187830:CDS
CATAGTGAAATCCTGGAGTA+TGG 0.420412 2_1:-2589514 Msa0187830:three_prime_UTR
TGCTAATTGTGTCGCTGGAC+TGG 0.432497 2_1:+2591760 None:intergenic
TTGGTTCATCTTTGGCAAGA+TGG 0.435669 2_1:-2591635 Msa0187830:CDS
TAAAGGGTTTGATGCCTTGG+AGG 0.436696 2_1:-2589862 Msa0187830:CDS
ATTGGAGAGAGAGGAGGAAG+GGG 0.438288 2_1:+2592252 None:intergenic
TGGGGAGTCTTGATGCCGTT+GGG 0.440117 2_1:-2590868 Msa0187830:CDS
TTCATAGCATAGTGAAATCC+TGG 0.444279 2_1:-2589521 Msa0187830:three_prime_UTR
ACTGAGATAGATATAGATAC+TGG 0.445998 2_1:-2589651 Msa0187830:three_prime_UTR
TCAAGTCTGCAGACCCTGCT+TGG 0.447998 2_1:-2590816 Msa0187830:CDS
GAGTGTTTGTAGTATACTCT+TGG 0.448168 2_1:-2589566 Msa0187830:three_prime_UTR
AACAAGTTGCAAGGAATGAA+TGG 0.449100 2_1:-2589711 Msa0187830:CDS
AGATTGGAGAGAGAGGAGGA+AGG 0.451634 2_1:+2592250 None:intergenic
GATTGGAGAGAGAGGAGGAA+GGG 0.457016 2_1:+2592251 None:intergenic
TGGATATGGTTCTAGGGTGT+AGG 0.460818 2_1:-2589676 Msa0187830:exon
CAAGGAATGAATGGAACAAA+TGG 0.462291 2_1:-2589702 Msa0187830:CDS
TCCAGCAACACCAACTATAT+AGG 0.465181 2_1:+2590762 None:intergenic
GGTGTTGCTGGATGGGGTAC+CGG 0.465931 2_1:-2590751 Msa0187830:CDS
ATGAATGGAACAAATGGTAA+TGG 0.468323 2_1:-2589696 Msa0187830:CDS
ACTGGCATTATTGCAGCATT+GGG 0.469702 2_1:-2589798 Msa0187830:CDS
AGAGAGTTGGTGGGTTTGGG+TGG 0.470809 2_1:+2592282 None:intergenic
GGGTTATTATAGAGAGTTGG+TGG 0.476197 2_1:+2592272 None:intergenic
AAGGGGTTATTATAGAGAGT+TGG 0.476615 2_1:+2592269 None:intergenic
TATAGTTGGTGTTGCTGGAT+GGG 0.478511 2_1:-2590758 Msa0187830:CDS
CTCTCTGCTAATTGTGTCGC+TGG 0.479571 2_1:+2591755 None:intergenic
CAATCAGCTGCCTATATAGT+TGG 0.479959 2_1:-2590772 Msa0187830:CDS
TCTACTGGAACCTTTACCAT+TGG 0.481797 2_1:-2589929 Msa0187830:CDS
GAGTGCTAAATGCAATAAGC+TGG 0.482103 2_1:-2590888 Msa0187830:CDS
TTGTGTTGTTGTTTGTGCTA+AGG 0.482521 2_1:+2592060 None:intergenic
GGTGCTTCTGAACAAGGATC+AGG 0.484364 2_1:-2591530 Msa0187830:CDS
TATATAGGCAGCTGATTGGC+AGG 0.484585 2_1:+2590777 None:intergenic
GGTTGTGAGATTGGAGAGAG+AGG 0.485045 2_1:+2592243 None:intergenic
GGGATCATCATCTTCTGCCT+TGG 0.486081 2_1:-2590673 Msa0187830:CDS
GAAGATGTGAGATCCTTGTC+TGG 0.487322 2_1:+2591857 None:intergenic
CAACTATATAGGCAGCTGAT+TGG 0.489184 2_1:+2590773 None:intergenic
ATCACAAAATCAGATTCTAC+TGG 0.492868 2_1:-2589944 Msa0187830:CDS
GATCTCACATCTTCCATGAA+TGG 0.494534 2_1:-2591848 Msa0187830:CDS
AACCTTTACCATTGGGGTGT+CGG 0.496844 2_1:-2589921 Msa0187830:CDS
ACCAAAGTAGTAGTTCCAAC+AGG 0.497576 2_1:+2591653 None:intergenic
ATATAGTTGGTGTTGCTGGA+TGG 0.498343 2_1:-2590759 Msa0187830:CDS
CTGGGGAGTCTTGATGCCGT+TGG 0.502768 2_1:-2590869 Msa0187830:CDS
GGATATGGTTCTAGGGTGTA+GGG 0.503228 2_1:-2589675 Msa0187830:exon
ATCCGACACCCCAATGGTAA+AGG 0.503836 2_1:+2589919 None:intergenic
GCAAGTATTACTCTTCCTGT+TGG 0.510786 2_1:-2591668 Msa0187830:CDS
TTAGGAGTTCCACTAGATTG+TGG 0.518776 2_1:+2591803 None:intergenic
AAGCTTGGCAGTGACTCGGC+TGG 0.518836 2_1:-2590724 Msa0187830:CDS
ACACAAACCGATGGGTAGCA+TGG 0.519624 2_1:-2591889 Msa0187830:CDS
AACTCACCTCGTATCTCCAC+TGG 0.522653 2_1:-2591970 Msa0187830:CDS
TTATTGCATTTAGCACTCCA+TGG 0.523173 2_1:+2590893 None:intergenic
TGGGGTACCGGTCTCAAGCT+TGG 0.527745 2_1:-2590739 Msa0187830:CDS
GTTGCAATTCCACAATCTAG+TGG 0.528492 2_1:-2591812 Msa0187830:CDS
ATAGTTGGTGTTGCTGGATG+GGG 0.535576 2_1:-2590757 Msa0187830:CDS
GGCATTATTGCAGCATTGGG+TGG 0.536995 2_1:-2589795 Msa0187830:CDS
TGGTAATGGATATGGTTCTA+GGG 0.540128 2_1:-2589682 Msa0187830:CDS
TGAGGAGATTGAAAGTGAAG+AGG 0.541064 2_1:+2592222 None:intergenic
TATTGCATTTAGCACTCCAT+GGG 0.546826 2_1:+2590894 None:intergenic
CTCATACCTGAAGGGTTCCA+AGG 0.549493 2_1:+2590656 None:intergenic
GTCACTGCCAAGCTTGAGAC+CGG 0.549684 2_1:+2590732 None:intergenic
AAATGATACAAAGTATCCAC+TGG 0.549921 2_1:+2589472 None:intergenic
ACATGAAGGTAAAACCAAGC+AGG 0.551666 2_1:+2590802 None:intergenic
AACTGGAAGCATGCGTACAC+TGG 0.553041 2_1:-2589816 Msa0187830:CDS
TGTGATTGCAAGGTACTTGA+AGG 0.556632 2_1:-2590842 Msa0187830:CDS
TACTGGAACCTTTACCATTG+GGG 0.558856 2_1:-2589927 Msa0187830:CDS
GGTTATTATAGAGAGTTGGT+GGG 0.567435 2_1:+2592273 None:intergenic
AGTGCTAAATGCAATAAGCT+GGG 0.569932 2_1:-2590887 Msa0187830:CDS
CACAAACCGATGGGTAGCAT+GGG 0.570671 2_1:-2591888 Msa0187830:CDS
CATGGATCATTGTGATCAAG+AGG 0.572443 2_1:-2589746 Msa0187830:CDS
TCTCAAGCTTGGCAGTGACT+CGG 0.574366 2_1:-2590728 Msa0187830:CDS
TCGCCATGCTATTATTCCAG+TGG 0.577374 2_1:-2589488 Msa0187830:three_prime_UTR
TATTCAACTCATAGAACACT+CGG 0.580467 2_1:-2590694 Msa0187830:CDS
CATGGCGAAAACCATACTCC+AGG 0.580782 2_1:+2589503 None:intergenic
TGTGAGATTGGAGAGAGAGG+AGG 0.580916 2_1:+2592246 None:intergenic
GTAGCACTCAATCTTGAATG+AGG 0.591825 2_1:+2591719 None:intergenic
TGCTACACATGAAAATAATG+AGG 0.596383 2_1:-2591702 Msa0187830:CDS
TCTGAACAAGGATCAGGCGG+TGG 0.598620 2_1:-2591524 Msa0187830:CDS
GTATAACAAACACAAACCGA+TGG 0.599459 2_1:-2591898 Msa0187830:CDS
TGGAGATACGAGGTGAGTTG+TGG 0.602619 2_1:+2591974 None:intergenic
AAATCAGAGAACAAGTTGCA+AGG 0.608640 2_1:-2589720 Msa0187830:CDS
CGTTGGGAGCTGTGATTGCA+AGG 0.616544 2_1:-2590852 Msa0187830:CDS
TTGCGTATCCGACACCCCAA+TGG 0.617721 2_1:+2589913 None:intergenic
TAATAGCCCATGCTACCCAT+CGG 0.617929 2_1:+2591882 None:intergenic
ATCTGCTGCAGACACCTCCA+AGG 0.621895 2_1:+2589848 None:intergenic
GACATAGCATTCAGACACTC+AGG 0.622339 2_1:-2591920 Msa0187830:CDS
TATCCACTGGAATAATAGCA+TGG 0.624226 2_1:+2589485 None:intergenic
CTGATTGGCAGGTAACATGA+AGG 0.627406 2_1:+2590788 None:intergenic
CATGTAATCTCATACCTGAA+GGG 0.631087 2_1:+2590648 None:intergenic
TATAACAAACACAAACCGAT+GGG 0.637410 2_1:-2591897 Msa0187830:CDS
CATGAAGGTAAAACCAAGCA+GGG 0.639212 2_1:+2590803 None:intergenic
CTAGTCATATCATGAGCTTG+AGG 0.649595 2_1:+2591593 None:intergenic
GTGCTAAATGCAATAAGCTG+GGG 0.662810 2_1:-2590886 Msa0187830:CDS
CTTGCAATCACAGCTCCCAA+CGG 0.668115 2_1:+2590853 None:intergenic
ATTCAACTCATAGAACACTC+GGG 0.675546 2_1:-2590693 Msa0187830:CDS
GCTTCTGAACAAGGATCAGG+CGG 0.676930 2_1:-2591527 Msa0187830:CDS
TGGACATACGATCAAAACAC+AGG 0.688340 2_1:-2591950 Msa0187830:CDS
ATGTTGTTATGATTGAGATG+AGG 0.696927 2_1:+2592101 None:intergenic
AAGATGTGAGATCCTTGTCT+GGG 0.704804 2_1:+2591858 None:intergenic
ATGGGCTATTAACCCAGACA+AGG 0.714059 2_1:-2591870 Msa0187830:CDS
GTATGTCCAGTGGAGATACG+AGG 0.728963 2_1:+2591964 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAAAACTACTAATAAAAT+TGG + chr2_1:2590402-2590421 None:intergenic 10.0%
!! AAGAAAAATGTATAAATAAA+GGG + chr2_1:2591362-2591381 None:intergenic 10.0%
!! TAAGAAAAATGTATAAATAA+AGG + chr2_1:2591363-2591382 None:intergenic 10.0%
!!! ATAATCAAAGTTTTAAATTG+CGG - chr2_1:2590332-2590351 Msa0187830:intron 15.0%
!!! AAATTGATTTTAGTTAAAGA+TGG - chr2_1:2590541-2590560 Msa0187830:intron 15.0%
!!! AATTGATTTTAGTTAAAGAT+GGG - chr2_1:2590542-2590561 Msa0187830:intron 15.0%
!!! AATATTTTAAATTGCATATG+TGG - chr2_1:2591066-2591085 Msa0187830:intron 15.0%
!! AATTAGAGTTATATTGTATT+GGG + chr2_1:2591297-2591316 None:intergenic 15.0%
!! TAATTAGAGTTATATTGTAT+TGG + chr2_1:2591298-2591317 None:intergenic 15.0%
!! AGAAAAATGTATAAATAAAG+GGG + chr2_1:2591361-2591380 None:intergenic 15.0%
!!! TTTGTTTTTGTTTTTGTGTT+GGG + chr2_1:2589477-2589496 None:intergenic 20.0%
!!! TAGTTTTTTTAGTGTTGATT+TGG - chr2_1:2590412-2590431 Msa0187830:intron 20.0%
!!! TTGGATTTTATTTGGTAATT+TGG - chr2_1:2590714-2590733 Msa0187830:CDS 20.0%
!!! GACACTTTTTTTTAGAAAAT+GGG + chr2_1:2591228-2591247 None:intergenic 20.0%
!!! TTATGAGTTTTATTGAGTTT+TGG - chr2_1:2592044-2592063 Msa0187830:CDS 20.0%
!! TGCAACAAAATATACAAAAA+GGG + chr2_1:2592077-2592096 None:intergenic 20.0%
!! ATGCAACAAAATATACAAAA+AGG + chr2_1:2592078-2592097 None:intergenic 20.0%
!!! CTTTGTTTTTGTTTTTGTGT+TGG + chr2_1:2589478-2589497 None:intergenic 25.0%
! ATTGATGAAGTATAAGCTTT+AGG + chr2_1:2589882-2589901 None:intergenic 25.0%
! ATTATATCACCTTCAATCAA+AGG - chr2_1:2590254-2590273 Msa0187830:intron 25.0%
! TTATATCACCTTCAATCAAA+GGG - chr2_1:2590255-2590274 Msa0187830:intron 25.0%
!!! TGAACTTTTTTCTGTCAAAT+TGG - chr2_1:2590476-2590495 Msa0187830:intron 25.0%
!! AAATTGGTGAATTGTTGTTA+AGG - chr2_1:2590492-2590511 Msa0187830:intron 25.0%
!! AAGAAGGTTTGGATTTTATT+TGG - chr2_1:2590706-2590725 Msa0187830:CDS 25.0%
! GGTAATTTGGAAATTGATTA+AGG - chr2_1:2590727-2590746 Msa0187830:CDS 25.0%
!!! GGACACTTTTTTTTAGAAAA+TGG + chr2_1:2591229-2591248 None:intergenic 25.0%
!!! TGAAATGACTCAGTTATTTT+GGG + chr2_1:2591250-2591269 None:intergenic 25.0%
!! TTGAAATGACTCAGTTATTT+TGG + chr2_1:2591251-2591270 None:intergenic 25.0%
!!! ATATACAAGGTTTTGAATTG+TGG - chr2_1:2591433-2591452 Msa0187830:intron 25.0%
!! TAGATATAGATACTGGATTT+TGG - chr2_1:2592020-2592039 Msa0187830:CDS 25.0%
!!! TGTGTTGGGTTTTTTTTATG+AGG + chr2_1:2589463-2589482 None:intergenic 30.0%
TTCCATCAAAAACATCAACA+TGG - chr2_1:2589518-2589537 Msa0187830:three_prime_UTR 30.0%
!! AACCATGTTGATGTTTTTGA+TGG + chr2_1:2589523-2589542 None:intergenic 30.0%
ATGTTGTTATGATTGAGATG+AGG + chr2_1:2589566-2589585 None:intergenic 30.0%
TATAACAAACACAAACCGAT+GGG - chr2_1:2589767-2589786 Msa0187830:CDS 30.0%
TGCTACACATGAAAATAATG+AGG - chr2_1:2589962-2589981 Msa0187830:CDS 30.0%
TAGTGCTAATACTCAATCTA+AGG - chr2_1:2590091-2590110 Msa0187830:intron 30.0%
!!! TAATTTTTTGTTCAGACCCA+TGG - chr2_1:2590754-2590773 Msa0187830:CDS 30.0%
TATTCAACTCATAGAACACT+CGG - chr2_1:2590970-2590989 Msa0187830:intron 30.0%
TGTATAAATAAAGGGGAAAG+TGG + chr2_1:2591354-2591373 None:intergenic 30.0%
TAAAAAAAGCAATGATGCTG+CGG - chr2_1:2591543-2591562 Msa0187830:CDS 30.0%
! AAACTTTTCCTACTGAATAC+AGG - chr2_1:2591667-2591686 Msa0187830:CDS 30.0%
! CTGATTTTGTGATCTTTGTT+TGG + chr2_1:2591713-2591732 None:intergenic 30.0%
ATCACAAAATCAGATTCTAC+TGG - chr2_1:2591720-2591739 Msa0187830:CDS 30.0%
AGCATCATCAACATCTTTAA+AGG - chr2_1:2591785-2591804 Msa0187830:CDS 30.0%
GCATCATCAACATCTTTAAA+GGG - chr2_1:2591786-2591805 Msa0187830:CDS 30.0%
ATGAATGGAACAAATGGTAA+TGG - chr2_1:2591968-2591987 Msa0187830:CDS 30.0%
ACTGAGATAGATATAGATAC+TGG - chr2_1:2592013-2592032 Msa0187830:CDS 30.0%
! AAATGATACAAAGTATCCAC+TGG + chr2_1:2592195-2592214 None:intergenic 30.0%
! GGTTATTATAGAGAGTTGGT+GGG + chr2_1:2589394-2589413 None:intergenic 35.0%
AAGGGGTTATTATAGAGAGT+TGG + chr2_1:2589398-2589417 None:intergenic 35.0%
TCAACATGGTTGTGAACTTA+AGG - chr2_1:2589532-2589551 Msa0187830:three_prime_UTR 35.0%
!! TTGTGTTGTTGTTTGTGCTA+AGG + chr2_1:2589607-2589626 None:intergenic 35.0%
GTATAACAAACACAAACCGA+TGG - chr2_1:2589766-2589785 Msa0187830:CDS 35.0%
! CTACTACTTTGGTTCATCTT+TGG - chr2_1:2590021-2590040 Msa0187830:intron 35.0%
TACTCAATCTAAGGAGAGTT+TGG - chr2_1:2590100-2590119 Msa0187830:intron 35.0%
ACTATAGACCCTTTGATTGA+AGG + chr2_1:2590266-2590285 None:intergenic 35.0%
!! GTGATGGATCGTTAATATCA+CGG - chr2_1:2590363-2590382 Msa0187830:intron 35.0%
TCGTTAATATCACGGAGAAT+TGG - chr2_1:2590371-2590390 Msa0187830:intron 35.0%
TTAGATGTTACGCAACAAGA+AGG - chr2_1:2590690-2590709 Msa0187830:CDS 35.0%
TATTGCATTTAGCACTCCAT+GGG + chr2_1:2590773-2590792 None:intergenic 35.0%
TTATTGCATTTAGCACTCCA+TGG + chr2_1:2590774-2590793 None:intergenic 35.0%
AGTGCTAAATGCAATAAGCT+GGG - chr2_1:2590777-2590796 Msa0187830:CDS 35.0%
ATTCAACTCATAGAACACTC+GGG - chr2_1:2590971-2590990 Msa0187830:intron 35.0%
CATGTAATCTCATACCTGAA+GGG + chr2_1:2591019-2591038 None:intergenic 35.0%
ACATGTAATCTCATACCTGA+AGG + chr2_1:2591020-2591039 None:intergenic 35.0%
AGAAAATGGGTCAGATATTC+CGG + chr2_1:2591215-2591234 None:intergenic 35.0%
ATCTGTGTGAAAAACCAAAC+TGG - chr2_1:2591383-2591402 Msa0187830:intron 35.0%
AGCAAAAACCTGTATTCAGT+AGG + chr2_1:2591678-2591697 None:intergenic 35.0%
!! TACTTTTGGAAGCTTACACA+TGG - chr2_1:2591900-2591919 Msa0187830:CDS 35.0%
AAATCAGAGAACAAGTTGCA+AGG - chr2_1:2591944-2591963 Msa0187830:CDS 35.0%
AACAAGTTGCAAGGAATGAA+TGG - chr2_1:2591953-2591972 Msa0187830:CDS 35.0%
CAAGGAATGAATGGAACAAA+TGG - chr2_1:2591962-2591981 Msa0187830:CDS 35.0%
!! GGAACAAATGGTAATGGATA+TGG - chr2_1:2591974-2591993 Msa0187830:CDS 35.0%
!! ATGGTAATGGATATGGTTCT+AGG - chr2_1:2591981-2592000 Msa0187830:CDS 35.0%
!! TGGTAATGGATATGGTTCTA+GGG - chr2_1:2591982-2592001 Msa0187830:CDS 35.0%
GAGTGTTTGTAGTATACTCT+TGG - chr2_1:2592098-2592117 Msa0187830:CDS 35.0%
TTCATAGCATAGTGAAATCC+TGG - chr2_1:2592143-2592162 Msa0187830:exon 35.0%
TATCCACTGGAATAATAGCA+TGG + chr2_1:2592182-2592201 None:intergenic 35.0%
!! TATAGAGAGTTGGTGGGTTT+GGG + chr2_1:2589388-2589407 None:intergenic 40.0%
!! TTATAGAGAGTTGGTGGGTT+TGG + chr2_1:2589389-2589408 None:intergenic 40.0%
GGGTTATTATAGAGAGTTGG+TGG + chr2_1:2589395-2589414 None:intergenic 40.0%
AAGTGAAGAGGTTGTGAGAT+TGG + chr2_1:2589433-2589452 None:intergenic 40.0%
TGAGGAGATTGAAAGTGAAG+AGG + chr2_1:2589445-2589464 None:intergenic 40.0%
!!! TGTTTTGATCGTATGTCCAG+TGG + chr2_1:2589713-2589732 None:intergenic 40.0%
TGGACATACGATCAAAACAC+AGG - chr2_1:2589714-2589733 Msa0187830:CDS 40.0%
AAGATGTGAGATCCTTGTCT+GGG + chr2_1:2589809-2589828 None:intergenic 40.0%
GATCTCACATCTTCCATGAA+TGG - chr2_1:2589816-2589835 Msa0187830:CDS 40.0%
GTTGCAATTCCACAATCTAG+TGG - chr2_1:2589852-2589871 Msa0187830:CDS 40.0%
TTAGGAGTTCCACTAGATTG+TGG + chr2_1:2589864-2589883 None:intergenic 40.0%
GTAGCACTCAATCTTGAATG+AGG + chr2_1:2589948-2589967 None:intergenic 40.0%
GCAAGTATTACTCTTCCTGT+TGG - chr2_1:2589996-2590015 Msa0187830:intron 40.0%
TCCTGTTGGAACTACTACTT+TGG - chr2_1:2590010-2590029 Msa0187830:intron 40.0%
ACCAAAGTAGTAGTTCCAAC+AGG + chr2_1:2590014-2590033 None:intergenic 40.0%
TTGGTTCATCTTTGGCAAGA+TGG - chr2_1:2590029-2590048 Msa0187830:intron 40.0%
CTAGTCATATCATGAGCTTG+AGG + chr2_1:2590074-2590093 None:intergenic 40.0%
TGTTACGCAACAAGAAGGTT+TGG - chr2_1:2590695-2590714 Msa0187830:CDS 40.0%
GAGTGCTAAATGCAATAAGC+TGG - chr2_1:2590776-2590795 Msa0187830:CDS 40.0%
GTGCTAAATGCAATAAGCTG+GGG - chr2_1:2590778-2590797 Msa0187830:CDS 40.0%
! TGTGATTGCAAGGTACTTGA+AGG - chr2_1:2590822-2590841 Msa0187830:CDS 40.0%
CATGAAGGTAAAACCAAGCA+GGG + chr2_1:2590864-2590883 None:intergenic 40.0%
ACATGAAGGTAAAACCAAGC+AGG + chr2_1:2590865-2590884 None:intergenic 40.0%
CAACTATATAGGCAGCTGAT+TGG + chr2_1:2590894-2590913 None:intergenic 40.0%
CAATCAGCTGCCTATATAGT+TGG - chr2_1:2590892-2590911 Msa0187830:CDS 40.0%
TCCAGCAACACCAACTATAT+AGG + chr2_1:2590905-2590924 None:intergenic 40.0%
!! ATATAGTTGGTGTTGCTGGA+TGG - chr2_1:2590905-2590924 Msa0187830:intron 40.0%
!! TATAGTTGGTGTTGCTGGAT+GGG - chr2_1:2590906-2590925 Msa0187830:intron 40.0%
GAAAATGGGTCAGATATTCC+GGG + chr2_1:2591214-2591233 None:intergenic 40.0%
! CCAAACTGGCTCAGATAAAA+CGG - chr2_1:2591397-2591416 Msa0187830:intron 40.0%
! CAAACTGGCTCAGATAAAAC+GGG - chr2_1:2591398-2591417 Msa0187830:intron 40.0%
!!! AAGGTTTTGAATTGTGGCTG+TGG - chr2_1:2591439-2591458 Msa0187830:intron 40.0%
TCAAAAGACGCATATCAGCA+AGG + chr2_1:2591600-2591619 None:intergenic 40.0%
! AGGTTTTTGCTCTGCTATTG+AGG - chr2_1:2591687-2591706 Msa0187830:CDS 40.0%
TCTACTGGAACCTTTACCAT+TGG - chr2_1:2591735-2591754 Msa0187830:CDS 40.0%
CTACTGGAACCTTTACCATT+GGG - chr2_1:2591736-2591755 Msa0187830:CDS 40.0%
TACTGGAACCTTTACCATTG+GGG - chr2_1:2591737-2591756 Msa0187830:CDS 40.0%
! CTTTAAAGGGTTTGATGCCT+TGG - chr2_1:2591799-2591818 Msa0187830:CDS 40.0%
ACTGGCATTATTGCAGCATT+GGG - chr2_1:2591866-2591885 Msa0187830:CDS 40.0%
CATGGATCATTGTGATCAAG+AGG - chr2_1:2591918-2591937 Msa0187830:CDS 40.0%
CATAGTGAAATCCTGGAGTA+TGG - chr2_1:2592150-2592169 Msa0187830:five_prime_UTR 40.0%
GACATAGCATTCAGACACTC+AGG - chr2_1:2589744-2589763 Msa0187830:CDS 45.0%
TAATAGCCCATGCTACCCAT+CGG + chr2_1:2589785-2589804 None:intergenic 45.0%
! ATGGGCTATTAACCCAGACA+AGG - chr2_1:2589794-2589813 Msa0187830:CDS 45.0%
GAAGATGTGAGATCCTTGTC+TGG + chr2_1:2589810-2589829 None:intergenic 45.0%
CAAAGCTTGTGCTCCATTCA+TGG + chr2_1:2589832-2589851 None:intergenic 45.0%
CATGAATGGAGCACAAGCTT+TGG - chr2_1:2589830-2589849 Msa0187830:CDS 45.0%
GAGAGTTTGGATCTTCGTTC+TGG - chr2_1:2590113-2590132 Msa0187830:intron 45.0%
AATTGCGGCTATGATCGTGA+TGG - chr2_1:2590347-2590366 Msa0187830:intron 45.0%
CTGATTGGCAGGTAACATGA+AGG + chr2_1:2590879-2590898 None:intergenic 45.0%
TATATAGGCAGCTGATTGGC+AGG + chr2_1:2590890-2590909 None:intergenic 45.0%
!! GCCTATATAGTTGGTGTTGC+TGG - chr2_1:2590901-2590920 Msa0187830:intron 45.0%
!! ATAGTTGGTGTTGCTGGATG+GGG - chr2_1:2590907-2590926 Msa0187830:intron 45.0%
! CCGTTTTATCTGAGCCAGTT+TGG + chr2_1:2591400-2591419 None:intergenic 45.0%
GACGGAGGGAGTAATATACA+AGG - chr2_1:2591420-2591439 Msa0187830:intron 45.0%
AACCTTTACCATTGGGGTGT+CGG - chr2_1:2591743-2591762 Msa0187830:CDS 45.0%
TAAAGGGTTTGATGCCTTGG+AGG - chr2_1:2591802-2591821 Msa0187830:CDS 45.0%
CACTGGCATTATTGCAGCAT+TGG - chr2_1:2591865-2591884 Msa0187830:CDS 45.0%
!! TGGATATGGTTCTAGGGTGT+AGG - chr2_1:2591988-2592007 Msa0187830:CDS 45.0%
!! GGATATGGTTCTAGGGTGTA+GGG - chr2_1:2591989-2592008 Msa0187830:CDS 45.0%
TCGCCATGCTATTATTCCAG+TGG - chr2_1:2592176-2592195 Msa0187830:five_prime_UTR 45.0%
ATTGGAGAGAGAGGAGGAAG+GGG + chr2_1:2589415-2589434 None:intergenic 50.0%
GATTGGAGAGAGAGGAGGAA+GGG + chr2_1:2589416-2589435 None:intergenic 50.0%
AGATTGGAGAGAGAGGAGGA+AGG + chr2_1:2589417-2589436 None:intergenic 50.0%
TGTGAGATTGGAGAGAGAGG+AGG + chr2_1:2589421-2589440 None:intergenic 50.0%
GGTTGTGAGATTGGAGAGAG+AGG + chr2_1:2589424-2589443 None:intergenic 50.0%
TGGAGATACGAGGTGAGTTG+TGG + chr2_1:2589693-2589712 None:intergenic 50.0%
AACTCACCTCGTATCTCCAC+TGG - chr2_1:2589694-2589713 Msa0187830:CDS 50.0%
GTATGTCCAGTGGAGATACG+AGG + chr2_1:2589703-2589722 None:intergenic 50.0%
ACACAAACCGATGGGTAGCA+TGG - chr2_1:2589775-2589794 Msa0187830:CDS 50.0%
CACAAACCGATGGGTAGCAT+GGG - chr2_1:2589776-2589795 Msa0187830:CDS 50.0%
! TGCTAATTGTGTCGCTGGAC+TGG + chr2_1:2589907-2589926 None:intergenic 50.0%
CTCTCTGCTAATTGTGTCGC+TGG + chr2_1:2589912-2589931 None:intergenic 50.0%
!! TGGCAAGATGGTGCTATGTC+TGG - chr2_1:2590041-2590060 Msa0187830:intron 50.0%
CGTTCTGGTGCTTCTGAACA+AGG - chr2_1:2590128-2590147 Msa0187830:intron 50.0%
GGTGCTTCTGAACAAGGATC+AGG - chr2_1:2590134-2590153 Msa0187830:intron 50.0%
GCTTCTGAACAAGGATCAGG+CGG - chr2_1:2590137-2590156 Msa0187830:intron 50.0%
CTTGCAATCACAGCTCCCAA+CGG + chr2_1:2590814-2590833 None:intergenic 50.0%
TCTCAAGCTTGGCAGTGACT+CGG - chr2_1:2590936-2590955 Msa0187830:intron 50.0%
GGGATCATCATCTTCTGCCT+TGG - chr2_1:2590991-2591010 Msa0187830:intron 50.0%
CTCATACCTGAAGGGTTCCA+AGG + chr2_1:2591011-2591030 None:intergenic 50.0%
ATGGGTCAGATATTCCGGGA+CGG + chr2_1:2591210-2591229 None:intergenic 50.0%
CTGGCTCAGATAAAACGGGA+CGG - chr2_1:2591402-2591421 Msa0187830:intron 50.0%
CTCAGATAAAACGGGACGGA+GGG - chr2_1:2591406-2591425 Msa0187830:intron 50.0%
ATGATGCTGCGGTCAGATTG+TGG - chr2_1:2591554-2591573 Msa0187830:CDS 50.0%
ATCCGACACCCCAATGGTAA+AGG + chr2_1:2591748-2591767 None:intergenic 50.0%
CAGCAGATCGCTACGATAAC+TGG - chr2_1:2591831-2591850 Msa0187830:CDS 50.0%
! AACTGGAAGCATGCGTACAC+TGG - chr2_1:2591848-2591867 Msa0187830:CDS 50.0%
! GGCATTATTGCAGCATTGGG+TGG - chr2_1:2591869-2591888 Msa0187830:CDS 50.0%
CATGGCGAAAACCATACTCC+AGG + chr2_1:2592164-2592183 None:intergenic 50.0%
TCTGAACAAGGATCAGGCGG+TGG - chr2_1:2590140-2590159 Msa0187830:intron 55.0%
TGGGGAGTCTTGATGCCGTT+GGG - chr2_1:2590796-2590815 Msa0187830:CDS 55.0%
CGTTGGGAGCTGTGATTGCA+AGG - chr2_1:2590812-2590831 Msa0187830:CDS 55.0%
TCAAGTCTGCAGACCCTGCT+TGG - chr2_1:2590848-2590867 Msa0187830:CDS 55.0%
GTCACTGCCAAGCTTGAGAC+CGG + chr2_1:2590935-2590954 None:intergenic 55.0%
CTTCTGCCTTGGAACCCTTC+AGG - chr2_1:2591002-2591021 Msa0187830:intron 55.0%
AACTACTACTCCCTCCGTCC+CGG - chr2_1:2591193-2591212 Msa0187830:intron 55.0%
GTCAGATATTCCGGGACGGA+GGG + chr2_1:2591206-2591225 None:intergenic 55.0%
GCTCAGATAAAACGGGACGG+AGG - chr2_1:2591405-2591424 Msa0187830:intron 55.0%
TTGCGTATCCGACACCCCAA+TGG + chr2_1:2591754-2591773 None:intergenic 55.0%
ATCTGCTGCAGACACCTCCA+AGG + chr2_1:2591819-2591838 None:intergenic 55.0%
! GGGTGGCGTTGCTGTACTTT+TGG - chr2_1:2591886-2591905 Msa0187830:CDS 55.0%
CTGGGGAGTCTTGATGCCGT+TGG - chr2_1:2590795-2590814 Msa0187830:CDS 60.0%
!! GGTGTTGCTGGATGGGGTAC+CGG - chr2_1:2590913-2590932 Msa0187830:intron 60.0%
!! TGGGGTACCGGTCTCAAGCT+TGG - chr2_1:2590925-2590944 Msa0187830:intron 60.0%
! AAGCTTGGCAGTGACTCGGC+TGG - chr2_1:2590940-2590959 Msa0187830:intron 60.0%
GGTCAGATATTCCGGGACGG+AGG + chr2_1:2591207-2591226 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr2_1 gene 2589385 2592301 2589385 ID=Msa0187830;Name=Msa0187830
chr2_1 mRNA 2589385 2592301 2589385 ID=Msa0187830-mRNA-1;Parent=Msa0187830;Name=Msa0187830-mRNA-1;_AED=0.01;_eAED=0.01;_QI=152|1|1|1|1|1|3|292|407
chr2_1 exon 2589385 2589997 2589385 ID=Msa0187830-mRNA-1:exon:1226;Parent=Msa0187830-mRNA-1
chr2_1 exon 2590663 2590917 2590663 ID=Msa0187830-mRNA-1:exon:1225;Parent=Msa0187830-mRNA-1
chr2_1 exon 2591502 2592301 2591502 ID=Msa0187830-mRNA-1:exon:1224;Parent=Msa0187830-mRNA-1
chr2_1 five_prime_UTR 2592150 2592301 2592150 ID=Msa0187830-mRNA-1:five_prime_utr;Parent=Msa0187830-mRNA-1
chr2_1 CDS 2591502 2592149 2591502 ID=Msa0187830-mRNA-1:cds;Parent=Msa0187830-mRNA-1
chr2_1 CDS 2590663 2590917 2590663 ID=Msa0187830-mRNA-1:cds;Parent=Msa0187830-mRNA-1
chr2_1 CDS 2589677 2589997 2589677 ID=Msa0187830-mRNA-1:cds;Parent=Msa0187830-mRNA-1
chr2_1 three_prime_UTR 2589385 2589676 2589385 ID=Msa0187830-mRNA-1:three_prime_utr;Parent=Msa0187830-mRNA-1
Gene Sequence

>Msa0187830

ATGGTTGTGAACTTAAGGTTCATGTTCCTCATCTCAATCATAACAACATCTCTTTTTGTTACAACAACCTTAGCACAAACAACAACACAAACACAAACATGTAAATCACACAACTTCACAAACAACGAAGTTTTCACATCATGTCGTGATCTACCACAACTCACCTCGTATCTCCACTGGACATACGATCAAAACACAGGAAAACTCGACATAGCATTCAGACACTCAGGTATAACAAACACAAACCGATGGGTAGCATGGGCTATTAACCCAGACAAGGATCTCACATCTTCCATGAATGGAGCACAAGCTTTGGTTGCAATTCCACAATCTAGTGGAACTCCTAAAGCTTATACTTCATCAATTGCCAGTCCAGCGACACAATTAGCAGAGAGTAATATTAGTTATCCTCATTCAAGATTGAGTGCTACACATGAAAATAATGAGGTTACGATTTATGCAAGTATTACTCTTCCTGTTGGAACTACTACTTTGGTTCATCTTTGGCAAGATGGTGCTATGTCTGGTTCTACACCTCAAGCTCATGATATGACTAGTGCTAATACTCAATCTAAGGAGAGTTTGGATCTTCGTTCTGGTGCTTCTGAACAAGGATCAGGCGGTGGTTCTCTCAGTAGAAGAAGAAATACCCATGGAGTGCTAAATGCAATAAGCTGGGGAGTCTTGATGCCGTTGGGAGCTGTGATTGCAAGGTACTTGAAGGTGTTCAAGTCTGCAGACCCTGCTTGGTTTTACCTTCATGTTACCTGCCAATCAGCTGCCTATATAGTTGGTGTTGCTGGATGGGGTACCGGTCTCAAGCTTGGCAGTGACTCGGCTGGTGTTACATATTCAACTCATAGAACACTCGGGATCATCATCTTCTGCCTTGGAACCCTTCAGGTTTTTGCTCTGCTATTGAGGCCAAACAAAGATCACAAAATCAGATTCTACTGGAACCTTTACCATTGGGGTGTCGGATACGCAACTATCATCATCAGCATCATCAACATCTTTAAAGGGTTTGATGCCTTGGAGGTGTCTGCAGCAGATCGCTACGATAACTGGAAGCATGCGTACACTGGCATTATTGCAGCATTGGGTGGCGTTGCTGTACTTTTGGAAGCTTACACATGGATCATTGTGATCAAGAGGAAGAAATCAGAGAACAAGTTGCAAGGAATGAATGGAACAAATGGTAATGGATATGGTTCTAGGGTGTAG

Protein sequence

>Msa0187830

MVVNLRFMFLISIITTSLFVTTTLAQTTTQTQTCKSHNFTNNEVFTSCRDLPQLTSYLHWTYDQNTGKLDIAFRHSGITNTNRWVAWAINPDKDLTSSMNGAQALVAIPQSSGTPKAYTSSIASPATQLAESNISYPHSRLSATHENNEVTIYASITLPVGTTTLVHLWQDGAMSGSTPQAHDMTSANTQSKESLDLRSGASEQGSGGGSLSRRRNTHGVLNAISWGVLMPLGAVIARYLKVFKSADPAWFYLHVTCQSAAYIVGVAGWGTGLKLGSDSAGVTYSTHRTLGIIIFCLGTLQVFALLLRPNKDHKIRFYWNLYHWGVGYATIIISIINIFKGFDALEVSAADRYDNWKHAYTGIIAALGGVAVLLEAYTWIIVIKRKKSENKLQGMNGTNGNGYGSRV*