AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0875640

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0875640 MtrunA17_Chr6g0456691 99.078 434 4 0 1 434 1 434 0.0 907
Msa0875640 MtrunA17_Chr6g0456681 53.953 430 179 7 1 426 1 415 9.00e-167 475
Msa0875640 MtrunA17_Chr7g0221281 76.033 242 58 0 184 425 1 242 2.68e-145 414
Msa0875640 MtrunA17_Chr2g0283851 51.695 354 149 11 79 419 56 400 1.06e-121 360
Msa0875640 MtrunA17_Chr8g0347321 44.505 364 194 3 63 419 77 439 3.10e-116 347
Msa0875640 MtrunA17_Chr8g0387921 41.429 420 226 5 12 419 8 419 7.15e-115 343
Msa0875640 MtrunA17_Chr7g0221271 71.707 205 57 1 1 204 1 205 3.31e-110 323
Msa0875640 MtrunA17_Chr6g0451321 43.767 361 195 6 71 427 109 465 3.64e-109 330
Msa0875640 MtrunA17_Chr5g0414041 45.355 366 183 9 65 420 76 434 1.09e-104 317
Msa0875640 MtrunA17_Chr8g0391481 40.731 383 205 8 61 430 10 383 1.74e-104 315
Msa0875640 MtrunA17_Chr5g0414061 43.785 354 180 9 78 420 94 439 3.09e-103 314
Msa0875640 MtrunA17_Chr7g0226991 41.620 358 187 8 76 420 55 403 4.51e-101 307
Msa0875640 MtrunA17_Chr3g0140371 42.210 353 185 9 78 420 18 361 4.04e-97 295
Msa0875640 MtrunA17_Chr5g0414091 37.590 415 241 10 17 420 25 432 1.64e-93 288
Msa0875640 MtrunA17_Chr5g0414051 39.831 354 195 10 78 420 75 421 1.10e-91 284
Msa0875640 MtrunA17_Chr7g0221291 69.591 171 51 1 1 170 1 171 3.06e-84 255
Msa0875640 MtrunA17_Chr1g0188191 35.417 384 219 9 52 422 217 584 2.82e-78 253
Msa0875640 MtrunA17_Chr6g0476041 34.250 400 239 9 41 422 124 517 1.38e-76 247
Msa0875640 MtrunA17_Chr7g0259711 31.050 438 256 11 20 433 31 446 6.81e-57 194
Msa0875640 MtrunA17_Chr2g0287901 33.333 378 221 13 54 419 79 437 1.43e-51 180
Msa0875640 MtrunA17_Chr1g0175671 31.152 382 195 11 74 422 166 512 7.36e-49 174
Msa0875640 MtrunA17_Chr5g0414081 38.942 208 116 6 231 428 2 208 1.84e-48 164
Msa0875640 MtrunA17_Chr7g0258851 31.169 385 211 13 74 432 244 600 2.03e-47 171
Msa0875640 MtrunA17_Chr3g0105301 30.114 352 220 9 77 419 42 376 8.22e-46 162
Msa0875640 MtrunA17_Chr3g0113671 31.549 355 215 11 76 415 104 445 2.06e-45 163
Msa0875640 MtrunA17_Chr4g0071391 28.302 371 228 11 74 427 105 454 7.25e-45 162
Msa0875640 MtrunA17_Chr5g0413271 29.459 370 218 11 67 419 133 476 1.15e-44 162
Msa0875640 MtrunA17_Chr7g0269991 31.302 361 209 9 78 424 137 472 1.75e-44 161
Msa0875640 MtrunA17_Chr5g0430371 30.000 360 220 10 76 419 56 399 7.36e-44 158
Msa0875640 MtrunA17_Chr7g0243301 31.302 361 224 12 69 415 55 405 6.65e-43 155
Msa0875640 MtrunA17_Chr1g0213281 28.504 421 241 13 40 427 134 527 1.56e-42 157
Msa0875640 MtrunA17_Chr8g0368461 30.334 389 218 13 63 420 164 530 2.43e-42 156
Msa0875640 MtrunA17_Chr8g0360521 28.689 366 214 11 76 419 69 409 3.84e-42 154
Msa0875640 MtrunA17_Chr4g0005491 31.421 366 226 14 64 415 49 403 7.53e-42 152
Msa0875640 MtrunA17_Chr4g0068111 30.748 361 222 10 72 419 108 453 1.89e-41 153
Msa0875640 MtrunA17_Chr8g0384151 28.571 357 222 11 75 422 87 419 1.65e-40 149
Msa0875640 MtrunA17_Chr4g0070341 28.571 399 230 14 52 419 97 471 5.77e-40 149
Msa0875640 MtrunA17_Chr6g0455901 27.676 383 215 11 77 426 70 423 7.98e-40 147
Msa0875640 MtrunA17_Chr5g0437601 27.650 434 261 16 14 419 16 424 1.30e-39 147
Msa0875640 MtrunA17_Chr4g0049421 27.701 361 226 7 78 419 48 392 1.11e-38 144
Msa0875640 MtrunA17_Chr3g0114101 29.609 358 220 12 78 419 89 430 1.16e-38 144
Msa0875640 MtrunA17_Chr4g0006991 29.609 358 220 12 78 419 86 427 1.57e-38 144
Msa0875640 MtrunA17_Chr2g0283581 30.769 351 204 10 78 421 42 360 2.07e-38 142
Msa0875640 MtrunA17_Chr3g0085081 28.329 353 217 10 69 415 22 344 6.45e-38 140
Msa0875640 MtrunA17_Chr5g0437291 29.050 358 223 13 76 415 163 507 1.24e-37 143
Msa0875640 MtrunA17_Chr3g0085071 27.887 355 216 9 69 415 37 359 5.87e-37 138
Msa0875640 MtrunA17_Chr3g0091031 28.329 353 217 11 69 415 22 344 1.11e-36 137
Msa0875640 MtrunA17_Chr2g0325481 29.915 351 203 11 78 419 50 366 1.93e-36 137
Msa0875640 MtrunA17_Chr4g0045951 29.014 355 212 9 75 421 42 364 2.66e-36 136
Msa0875640 MtrunA17_Chr4g0045941 28.895 353 213 9 71 415 24 346 4.58e-35 133
Msa0875640 MtrunA17_Chr4g0005481 29.363 361 224 12 73 419 103 446 5.60e-35 134
Msa0875640 MtrunA17_Chr8g0384421 27.224 371 210 11 78 419 133 472 8.38e-35 134
Msa0875640 MtrunA17_Chr7g0242701 29.558 362 215 14 78 419 86 427 2.31e-34 132
Msa0875640 MtrunA17_Chr2g0314801 28.409 352 219 9 74 419 29 353 7.52e-34 129
Msa0875640 MtrunA17_Chr4g0041011 27.930 401 240 14 30 419 1 363 5.13e-33 127
Msa0875640 MtrunA17_Chr3g0097891 27.714 350 217 9 77 419 30 350 1.40e-32 126
Msa0875640 MtrunA17_Chr5g0413851 28.900 391 226 15 39 419 11 359 8.63e-32 124
Msa0875640 MtrunA17_Chr1g0171171 26.214 412 252 12 20 419 4 375 9.87e-32 124
Msa0875640 MtrunA17_Chr1g0210771 27.042 355 223 9 74 419 55 382 2.84e-31 123
Msa0875640 MtrunA17_Chr3g0126021 27.273 363 221 11 73 419 124 459 4.90e-31 124
Msa0875640 MtrunA17_Chr2g0314791 29.178 353 203 11 78 419 29 345 1.04e-29 118
Msa0875640 MtrunA17_Chr1g0209921 32.778 180 105 6 76 250 42 210 1.42e-21 94.0
Msa0875640 MtrunA17_Chr1g0178081 30.688 189 116 5 72 249 49 233 8.93e-20 90.5
Msa0875640 MtrunA17_Chr1g0178081 33.588 131 72 5 297 419 218 341 8.55e-12 66.2
Msa0875640 MtrunA17_Chr7g0275501 52.239 67 29 2 354 418 3 68 1.68e-14 68.2
Msa0875640 MtrunA17_Chr2g0287931 36.975 119 62 5 138 247 2 116 4.73e-12 63.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0875640 AT5G15900.2 61.029 408 152 4 21 426 33 435 0.0 545
Msa0875640 AT5G15900.1 61.029 408 152 4 21 426 14 416 0.0 545
Msa0875640 AT3G02440.2 62.029 345 127 4 78 420 135 477 2.68e-164 471
Msa0875640 AT3G02440.1 62.029 345 127 4 78 420 127 469 4.20e-164 471
Msa0875640 AT5G15890.1 54.005 387 169 5 37 422 147 525 5.78e-163 469
Msa0875640 AT1G01430.1 41.363 411 222 9 30 429 54 456 2.34e-112 338
Msa0875640 AT3G28150.1 40.306 392 224 4 34 423 31 414 9.97e-111 332
Msa0875640 AT4G01080.1 46.133 375 164 11 70 423 78 435 1.41e-106 323
Msa0875640 AT4G23790.1 37.198 414 236 8 29 419 15 427 1.83e-103 314
Msa0875640 AT1G70230.1 36.659 431 227 10 14 420 4 412 1.83e-100 306
Msa0875640 AT4G11090.1 37.108 415 242 9 27 424 18 430 8.34e-100 305
Msa0875640 AT4G25360.1 33.586 396 240 7 50 426 140 531 3.85e-77 249
Msa0875640 AT4G25360.2 33.586 396 240 7 50 426 140 531 3.85e-77 249
Msa0875640 AT5G51640.1 34.748 377 228 7 59 422 120 491 1.62e-75 244
Msa0875640 AT3G06080.2 33.962 371 218 11 74 430 99 456 9.51e-56 191
Msa0875640 AT5G19160.1 31.757 444 247 17 20 428 32 454 2.28e-52 182
Msa0875640 AT3G12060.1 32.546 381 215 13 74 433 192 551 2.08e-50 179
Msa0875640 AT5G64470.3 32.500 360 205 11 78 419 55 394 8.22e-49 171
Msa0875640 AT2G14530.1 29.833 419 225 16 46 424 22 411 1.19e-48 171
Msa0875640 AT5G06700.1 32.105 380 218 11 72 432 249 607 1.05e-47 172
Msa0875640 AT5G64470.2 32.240 366 204 12 78 419 55 400 2.70e-47 167
Msa0875640 AT1G60790.1 30.025 403 236 12 43 424 161 538 4.06e-47 170
Msa0875640 AT5G06230.2 30.458 371 212 12 73 419 16 364 4.78e-46 163
Msa0875640 AT3G62390.1 30.357 392 218 11 60 423 111 475 5.24e-46 166
Msa0875640 AT5G20590.1 29.396 381 226 12 61 422 126 482 7.16e-46 166
Msa0875640 AT5G06230.1 30.458 371 212 12 73 419 57 405 1.07e-45 163
Msa0875640 AT3G11570.1 29.493 434 251 13 15 427 28 427 3.67e-45 162
Msa0875640 AT2G30010.1 31.680 363 209 12 76 419 54 396 1.32e-43 157
Msa0875640 AT5G64020.1 30.133 375 206 13 78 419 57 408 1.43e-43 157
Msa0875640 AT2G30010.2 31.768 362 208 12 77 419 98 439 1.61e-43 158
Msa0875640 AT5G49340.1 31.139 395 226 13 45 419 73 441 2.03e-43 158
Msa0875640 AT2G40160.2 28.501 407 238 15 51 431 58 437 3.97e-43 157
Msa0875640 AT1G73140.1 28.771 358 224 9 76 419 65 405 8.99e-43 155
Msa0875640 AT2G40160.1 28.767 365 217 12 75 415 74 419 4.71e-42 154
Msa0875640 AT1G48880.1 30.120 415 237 14 17 419 66 439 6.83e-42 154
Msa0875640 AT2G40320.1 28.710 411 263 10 24 419 27 422 1.12e-41 153
Msa0875640 AT5G58600.1 29.398 415 253 13 24 419 7 400 5.09e-41 150
Msa0875640 AT3G55990.1 29.859 355 221 11 76 415 138 479 1.37e-40 151
Msa0875640 AT2G40150.1 28.255 361 237 10 78 423 71 424 4.72e-40 148
Msa0875640 AT3G11030.1 30.028 363 217 12 76 419 104 448 6.82e-39 146
Msa0875640 AT5G19160.2 31.546 317 180 10 20 312 32 335 2.23e-38 142
Msa0875640 AT2G42570.1 31.332 383 213 14 48 419 21 364 2.24e-38 142
Msa0875640 AT2G38320.1 29.594 419 256 16 15 415 3 400 5.60e-38 142
Msa0875640 AT1G29050.1 27.841 352 216 8 77 421 60 380 7.13e-38 142
Msa0875640 AT5G01360.2 26.741 359 234 10 76 419 34 378 3.51e-37 140
Msa0875640 AT5G01360.1 26.816 358 235 9 76 419 90 434 7.75e-37 140
Msa0875640 AT2G30900.1 30.390 385 220 17 47 419 17 365 8.01e-37 138
Msa0875640 AT2G34070.1 27.089 347 226 7 77 421 64 385 1.12e-36 138
Msa0875640 AT3G06080.1 35.458 251 140 8 74 312 99 339 3.54e-36 136
Msa0875640 AT5G20680.6 27.500 400 226 14 55 419 87 457 4.34e-36 138
Msa0875640 AT5G20680.4 27.500 400 226 14 55 419 181 551 7.09e-36 139
Msa0875640 AT5G20680.1 27.500 400 226 14 55 419 181 551 7.09e-36 139
Msa0875640 AT5G20680.3 27.500 400 226 14 55 419 181 551 7.09e-36 139
Msa0875640 AT5G20680.5 27.500 400 226 14 55 419 181 551 7.09e-36 139
Msa0875640 AT5G20680.2 27.500 400 226 14 55 419 163 533 8.22e-36 139
Msa0875640 AT5G01620.2 28.650 363 219 11 76 419 108 449 1.20e-35 137
Msa0875640 AT5G01620.1 28.650 363 219 11 76 419 108 449 1.20e-35 137
Msa0875640 AT5G01620.3 28.650 363 219 11 76 419 116 457 1.78e-35 136
Msa0875640 AT2G37720.1 28.496 379 218 13 68 419 130 482 1.84e-35 137
Msa0875640 AT3G14850.2 28.612 353 209 11 74 415 30 350 1.52e-33 129
Msa0875640 AT5G64470.1 31.250 272 159 7 78 333 55 314 2.59e-33 128
Msa0875640 AT5G64470.4 31.136 273 160 7 78 334 55 315 3.27e-33 127
Msa0875640 AT2G31110.2 27.806 392 238 11 35 419 9 362 4.85e-32 125
Msa0875640 AT2G38320.2 29.630 324 199 12 108 415 7 317 4.30e-30 119
Msa0875640 AT5G58600.2 29.293 297 187 8 24 311 7 289 1.74e-29 117
Msa0875640 AT1G78710.1 27.123 365 221 12 66 419 26 356 3.04e-29 117
Msa0875640 AT3G62390.2 28.881 277 162 7 60 314 111 374 4.37e-29 118
Msa0875640 AT2G40160.3 31.707 205 124 4 51 251 58 250 1.51e-27 112
Msa0875640 AT5G06230.3 29.057 265 152 9 73 315 57 307 2.51e-27 111
Msa0875640 AT5G20590.2 28.464 267 161 8 61 312 126 377 4.15e-27 112
Msa0875640 AT3G54260.1 24.860 358 219 10 78 419 51 374 5.56e-25 105
Msa0875640 AT2G30900.2 37.500 160 93 4 47 204 17 171 1.29e-23 100
Msa0875640 AT2G31110.3 29.767 215 135 4 35 249 9 207 1.66e-20 91.3
Msa0875640 AT1G78710.2 29.189 185 120 4 66 249 19 193 3.87e-17 82.0
Msa0875640 AT2G34070.2 24.000 275 182 7 149 421 2 251 9.97e-15 74.3
Msa0875640 AT3G14850.1 26.087 276 165 10 149 415 2 247 7.33e-13 68.6

Find 94 sgRNAs with CRISPR-Local

Find 266 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AAAGAAATGGTTTGAAATTT+AGG 0.143773 6_1:-12296631 Msa0875640:CDS
CCAATATTTAAGTCTATTAA+TGG 0.170157 6_1:-12300829 Msa0875640:five_prime_UTR
CCATTAATAGACTTAAATAT+TGG 0.193373 6_1:+12300829 None:intergenic
ATTTCACCATGGCTGCTTAT+TGG 0.198427 6_1:-12297132 Msa0875640:CDS
CTTGCCTCATTACTCTTAAA+TGG 0.206869 6_1:+12296725 None:intergenic
AAGCATTGCTAATGGTTTAT+AGG 0.252015 6_1:-12300790 Msa0875640:five_prime_UTR
AAGGGAAATGAAAGAAGTTT+TGG 0.266458 6_1:+12300702 None:intergenic
AGAGAAAGGTGTAGGGAAAT+AGG 0.277763 6_1:+12300674 None:intergenic
ACTGATTTAACAATGTATTA+TGG 0.295531 6_1:-12296890 Msa0875640:CDS
TTAAGGGTGTGACATTTCTT+AGG 0.298839 6_1:-12296814 Msa0875640:CDS
AATTGAAAAGGATTGAAAAT+TGG 0.310424 6_1:+12300228 None:intergenic
CCTTTGTCTTATCCTTTGTT+TGG 0.310847 6_1:-12300510 Msa0875640:CDS
AGTAATGAGGCAAGGTTAGA+AGG 0.313538 6_1:-12296716 Msa0875640:CDS
GAATCAACATTTGAAGAGTT+TGG 0.319462 6_1:+12300450 None:intergenic
TTGTGTTCATTGGTGTTTGC+CGG 0.323288 6_1:-12296513 Msa0875640:CDS
CAATTTCTTGAAATTGTTAG+AGG 0.323954 6_1:-12300210 Msa0875640:CDS
AAATTTCAAACCATTTCTTT+TGG 0.329594 6_1:+12296634 None:intergenic
CATTAATAGACTTAAATATT+GGG 0.336747 6_1:+12300830 None:intergenic
TTTGTGTAATATGGTCCTTT+TGG 0.342622 6_1:+12300354 None:intergenic
CATAGAGATGCTCTTTCTCT+TGG 0.356795 6_1:+12300610 None:intergenic
AAATATTATTTATGTATGTA+TGG 0.359893 6_1:-12296385 Msa0875640:three_prime_UTR
ACAACTTGAAGCATTGCTAA+TGG 0.368679 6_1:-12300798 Msa0875640:five_prime_UTR
CATTGATTTGTCTTCTATCA+AGG 0.377308 6_1:-12300137 Msa0875640:CDS
ATTGGTAGTTCACACTCATT+TGG 0.381797 6_1:+12300246 None:intergenic
AATTGTTAGAGGAAAATCTA+TGG 0.387764 6_1:-12300199 Msa0875640:CDS
CAAAAGAAGGCCAAAAGAAA+TGG 0.396468 6_1:-12296644 Msa0875640:CDS
CATCAAAATTGCATGAAGTA+TGG 0.396655 6_1:-12300306 Msa0875640:CDS
CACTTCATGAACTCAGAATC+TGG 0.401439 6_1:+12300279 None:intergenic
TGTAGGGAAATAGGAGGATA+AGG 0.407354 6_1:+12300683 None:intergenic
CAAGAGAAAGAGCATCTCTA+TGG 0.409332 6_1:-12300609 Msa0875640:CDS
TTTGTGTATGATACATCTAT+AGG 0.421377 6_1:+12297193 None:intergenic
AAATCACTCCATGTATCTAT+AGG 0.439104 6_1:+12296488 None:intergenic
TTTGACTATGTCATACTCAA+TGG 0.443897 6_1:-12296995 Msa0875640:CDS
CTTGCTAGAAATGTTGAAGA+TGG 0.447896 6_1:-12296465 Msa0875640:CDS
TGTATAACGATTGTGTTCAT+TGG 0.450773 6_1:-12296523 Msa0875640:CDS
TGTGTTCATTGGTGTTTGCC+GGG 0.463636 6_1:-12296512 Msa0875640:CDS
GAGAATGGTATATGGAATCA+AGG 0.466149 6_1:-12296770 Msa0875640:CDS
CCTTTCTCATAGAATACCAT+TGG 0.468622 6_1:+12296953 None:intergenic
GGAGTTATATATGATCCAAT+TGG 0.472009 6_1:-12296684 Msa0875640:CDS
GATCATATATAACTCCATAT+TGG 0.477273 6_1:+12296691 None:intergenic
ACAATTTCAAGAAATTGAAA+AGG 0.480067 6_1:+12300216 None:intergenic
AGAAAACAAGAGAAAGGTGT+AGG 0.480466 6_1:+12300666 None:intergenic
AAAGAGAGAAAACAAGAGAA+AGG 0.484374 6_1:+12300660 None:intergenic
TTACACAAACAAAACATGTT+GGG 0.484375 6_1:-12300340 Msa0875640:CDS
GCCATGGTGAAATTGTAACT+TGG 0.501109 6_1:+12297142 None:intergenic
ATACAAAATTTCCCAAAAGA+AGG 0.501845 6_1:-12296657 Msa0875640:CDS
GGCAAATGACCGTATCTACT+AGG 0.502399 6_1:+12296563 None:intergenic
ATCAAGGTGGGAATTGTTTG+AGG 0.502442 6_1:-12296754 Msa0875640:CDS
CCAATGGTATTCTATGAGAA+AGG 0.509194 6_1:-12296953 Msa0875640:CDS
CAAACAAAGGATAAGACAAA+GGG 0.511568 6_1:+12300511 None:intergenic
ATTACACAAACAAAACATGT+TGG 0.513699 6_1:-12300341 Msa0875640:CDS
ATTGATTTGTCTTCTATCAA+GGG 0.514925 6_1:-12300136 Msa0875640:intron
GAAAACAAGAGAAAGGTGTA+GGG 0.519811 6_1:+12300667 None:intergenic
CTGAGTTCATGAAGTGGAGA+TGG 0.523549 6_1:-12300272 Msa0875640:CDS
GTAGGGAAATAGGAGGATAA+GGG 0.525313 6_1:+12300684 None:intergenic
GTAATGAGGCAAGGTTAGAA+GGG 0.526044 6_1:-12296715 Msa0875640:CDS
AAGATGACTATTTCATGAGA+TGG 0.526318 6_1:-12297171 Msa0875640:CDS
AATGTATTATGGCTATAGAA+AGG 0.534002 6_1:-12296879 Msa0875640:CDS
GAATGGGTGCCAAATCCAAA+AGG 0.542062 6_1:-12300369 Msa0875640:CDS
CTCCATGTATCTATAGGCCC+CGG 0.543072 6_1:+12296494 None:intergenic
CCATGGTGAAATTGTAACTT+GGG 0.548906 6_1:+12297143 None:intergenic
ATGGTATATGGAATCAAGGT+GGG 0.552248 6_1:-12296766 Msa0875640:CDS
TATCTACTAGGATGACCATC+TGG 0.553489 6_1:+12296575 None:intergenic
AAAATTGCATGAAGTATGGT+AGG 0.554471 6_1:-12300302 Msa0875640:CDS
AAGGTTAGAAGGGACCAATA+TGG 0.554657 6_1:-12296705 Msa0875640:CDS
TAGAAATGTTGAAGATGGAG+AGG 0.557876 6_1:-12296460 Msa0875640:CDS
AAAACTGAGAACATCGCAAA+GGG 0.566726 6_1:-12300875 Msa0875640:five_prime_UTR
GTTATATATGATCCAATTGG+AGG 0.568697 6_1:-12296681 Msa0875640:CDS
GATGGTCATCCTAGTAGATA+CGG 0.574936 6_1:-12296572 Msa0875640:CDS
ACTCAACAAGAAAATTCAGA+TGG 0.581680 6_1:-12297091 Msa0875640:CDS
GAAAGGTGTAGGGAAATAGG+AGG 0.584068 6_1:+12300677 None:intergenic
GGGTGTCCAATAAGCAGCCA+TGG 0.591946 6_1:+12297126 None:intergenic
TAAGCCATTTAAGAGTAATG+AGG 0.603193 6_1:-12296729 Msa0875640:CDS
GGGCTAAGTCTAAGAGAGAG+AGG 0.604499 6_1:-12296439 Msa0875640:CDS
ATACCATTCTCAAAATGAGA+TGG 0.606970 6_1:+12296782 None:intergenic
TGCCGGGGCCTATAGATACA+TGG 0.612962 6_1:-12296496 Msa0875640:CDS
CCAAACAAAGGATAAGACAA+AGG 0.615001 6_1:+12300510 None:intergenic
GCAATGTTATTGAGACCAGA+TGG 0.619557 6_1:-12296590 Msa0875640:CDS
CATTTAAGAGTAATGAGGCA+AGG 0.623526 6_1:-12296724 Msa0875640:CDS
TCATACTCAATGGAGGACAT+TGG 0.627466 6_1:-12296985 Msa0875640:CDS
TCAGATGGACCAACCCACAC+TGG 0.628911 6_1:-12297076 Msa0875640:CDS
GACTATGTCATACTCAATGG+AGG 0.630990 6_1:-12296992 Msa0875640:CDS
GTGTTCATTGGTGTTTGCCG+GGG 0.638635 6_1:-12296511 Msa0875640:CDS
TAAAACTGAGAACATCGCAA+AGG 0.643633 6_1:-12300876 Msa0875640:five_prime_UTR
TTGTAGAGACCAGTGTGGGT+TGG 0.646461 6_1:+12297067 None:intergenic
AGAAATGATGAACCAAACAA+AGG 0.648407 6_1:+12300498 None:intergenic
AGAAATGTTGAAGATGGAGA+GGG 0.651408 6_1:-12296459 Msa0875640:CDS
AATGGTATATGGAATCAAGG+TGG 0.651741 6_1:-12296767 Msa0875640:CDS
ACATTGGTTCTACAAGCCAA+TGG 0.660827 6_1:-12296969 Msa0875640:CDS
CAGATTCTGAGTTCATGAAG+TGG 0.668427 6_1:-12300278 Msa0875640:CDS
AAGATTGTAGAGACCAGTGT+GGG 0.682690 6_1:+12297063 None:intergenic
CCCAAGTTACAATTTCACCA+TGG 0.686237 6_1:-12297143 Msa0875640:CDS
AAACAAAGGATAAGACAAAG+GGG 0.730288 6_1:+12300512 None:intergenic
AAAGATTGTAGAGACCAGTG+TGG 0.741443 6_1:+12297062 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTGCTAATAAAATTATTTT+TGG + chr6_1:12296609-12296628 None:intergenic 10.0%
!!! CTCAATTTTTATTAAAAAAA+TGG - chr6_1:12297855-12297874 Msa0875640:intron 10.0%
!!! AAATTTATTTTATAGATAGA+TGG + chr6_1:12298331-12298350 None:intergenic 10.0%
!! TATTAAGAAATTATAATAAC+AGG + chr6_1:12298393-12298412 None:intergenic 10.0%
!! TATAAAAGTCAATTAAAATA+AGG + chr6_1:12299405-12299424 None:intergenic 10.0%
!!! TTTTTTTTATTAAATGCAAA+AGG - chr6_1:12299597-12299616 Msa0875640:intron 10.0%
!! AAATATTATTTATGTATGTA+TGG - chr6_1:12300782-12300801 Msa0875640:five_prime_UTR 10.0%
!! CATTAATAGACTTAAATATT+GGG + chr6_1:12296340-12296359 None:intergenic 15.0%
!!! TTAAAATACTTTTAATAGGT+TGG - chr6_1:12297491-12297510 Msa0875640:intron 15.0%
!! TAATTAAAGTAGAGTTATTT+GGG + chr6_1:12297958-12297977 None:intergenic 15.0%
!! TATTAATTAATTTCAGTTCT+TGG - chr6_1:12298720-12298739 Msa0875640:intron 15.0%
!!! AGTATTTGAGATTTTATTTT+TGG - chr6_1:12298992-12299011 Msa0875640:intron 15.0%
!!! AACAAATGATGATATTTTAA+TGG - chr6_1:12299199-12299218 Msa0875640:intron 15.0%
!!! ACAAATGATGATATTTTAAT+GGG - chr6_1:12299200-12299219 Msa0875640:intron 15.0%
!! AAGGAAATAATTAAATTAGT+TGG + chr6_1:12299707-12299726 None:intergenic 15.0%
!! ACTAATTTAATTATTTCCTT+TGG - chr6_1:12299707-12299726 Msa0875640:intron 15.0%
!! CTAATTTAATTATTTCCTTT+GGG - chr6_1:12299708-12299727 Msa0875640:intron 15.0%
!!! ACAATATTAAGAGTTTTAAT+TGG + chr6_1:12299834-12299853 None:intergenic 15.0%
!!! AAAATTTTCTAAGCTATTTA+AGG + chr6_1:12300335-12300354 None:intergenic 15.0%
!!! AAATAGCTTAGAAAATTTTA+AGG - chr6_1:12300336-12300355 Msa0875640:CDS 15.0%
!!! AATAGCTTAGAAAATTTTAA+GGG - chr6_1:12300337-12300356 Msa0875640:CDS 15.0%
!! CCATTAATAGACTTAAATAT+TGG + chr6_1:12296341-12296360 None:intergenic 20.0%
!! CCAATATTTAAGTCTATTAA+TGG - chr6_1:12296338-12296357 Msa0875640:three_prime_UTR 20.0%
!!! AAAAATTGTGACATTTTTAG+TGG - chr6_1:12296774-12296793 Msa0875640:CDS 20.0%
!! AATTGAAAAGGATTGAAAAT+TGG + chr6_1:12296942-12296961 None:intergenic 20.0%
!! ACAATTTCAAGAAATTGAAA+AGG + chr6_1:12296954-12296973 None:intergenic 20.0%
!! TTAACATAGACATCAAAAAA+GGG + chr6_1:12297145-12297164 None:intergenic 20.0%
!! ATTAACATAGACATCAAAAA+AGG + chr6_1:12297146-12297165 None:intergenic 20.0%
!! TATGTTAATTATAGTTGCTT+TGG - chr6_1:12297157-12297176 Msa0875640:CDS 20.0%
!! GTAATTAAAGTAGAGTTATT+TGG + chr6_1:12297959-12297978 None:intergenic 20.0%
!! AAGAAAAAAAACTAAGAGAT+TGG - chr6_1:12298004-12298023 Msa0875640:intron 20.0%
!! CTATTCTAGTATTTATTTGA+GGG + chr6_1:12298244-12298263 None:intergenic 20.0%
!! TCTATTCTAGTATTTATTTG+AGG + chr6_1:12298245-12298264 None:intergenic 20.0%
!! AATTACTGAGATAATTTATG+TGG + chr6_1:12298583-12298602 None:intergenic 20.0%
!!! TAAGTGTATATTTTATGAGT+TGG + chr6_1:12298799-12298818 None:intergenic 20.0%
!!! ACGTTTTATTAATAGACTTT+AGG + chr6_1:12298897-12298916 None:intergenic 20.0%
!! TATGTATAGTTAGTGTAAAA+TGG - chr6_1:12298940-12298959 Msa0875640:intron 20.0%
!! AAGGAAATTATTACCATAAA+AGG + chr6_1:12299338-12299357 None:intergenic 20.0%
!!! TATGGTAATAATTTCCTTTT+TGG - chr6_1:12299340-12299359 Msa0875640:intron 20.0%
!!! ATGTGTTTTAACCATTTTAA+TGG - chr6_1:12299522-12299541 Msa0875640:intron 20.0%
!! ATATTCAAGTACCATTAAAA+TGG + chr6_1:12299536-12299555 None:intergenic 20.0%
!! AAAGTCTCAAATAATTTAGA+GGG + chr6_1:12299807-12299826 None:intergenic 20.0%
!! TAAAGTCTCAAATAATTTAG+AGG + chr6_1:12299808-12299827 None:intergenic 20.0%
!!! ATTTTTCATCAAATTCATCT+AGG + chr6_1:12300132-12300151 None:intergenic 20.0%
!! TAGATGAATTTGATGAAAAA+TGG - chr6_1:12300131-12300150 Msa0875640:intron 20.0%
!!! ACTGATTTAACAATGTATTA+TGG - chr6_1:12300277-12300296 Msa0875640:CDS 20.0%
!!! AAATTTCAAACCATTTCTTT+TGG + chr6_1:12300536-12300555 None:intergenic 20.0%
!!! AAAGAAATGGTTTGAAATTT+AGG - chr6_1:12300536-12300555 Msa0875640:CDS 20.0%
!!! ACTATTATTGCCATATTTTT+TGG - chr6_1:12300820-12300839 Msa0875640:five_prime_UTR 20.0%
!! TCTACAAAATCCAAAAAATA+TGG + chr6_1:12300833-12300852 None:intergenic 20.0%
!!! CAATTTTTCAAAGATGTTGA+AGG + chr6_1:12296762-12296781 None:intergenic 25.0%
!!! CATGTTTTGTTTGTGTAATA+TGG + chr6_1:12296825-12296844 None:intergenic 25.0%
! ATTACACAAACAAAACATGT+TGG - chr6_1:12296826-12296845 Msa0875640:CDS 25.0%
! TTACACAAACAAAACATGTT+GGG - chr6_1:12296827-12296846 Msa0875640:CDS 25.0%
! CAATTTCTTGAAATTGTTAG+AGG - chr6_1:12296957-12296976 Msa0875640:CDS 25.0%
! AATTGTTAGAGGAAAATCTA+TGG - chr6_1:12296968-12296987 Msa0875640:CDS 25.0%
!!! ATTGATTTGTCTTCTATCAA+GGG - chr6_1:12297031-12297050 Msa0875640:CDS 25.0%
!!! TCATTGATTGATGGTATTTT+CGG + chr6_1:12297246-12297265 None:intergenic 25.0%
!! AATAGTGTATCATTGATTGA+TGG + chr6_1:12297255-12297274 None:intergenic 25.0%
! TAGTCATTTGTCAAAAGAAA+TGG - chr6_1:12297413-12297432 Msa0875640:intron 25.0%
!! TGTCATCTCTATTTCTTAAA+AGG + chr6_1:12297931-12297950 None:intergenic 25.0%
! AACATTTGTGATGTTTGATT+GGG + chr6_1:12298129-12298148 None:intergenic 25.0%
! AAACATTTGTGATGTTTGAT+TGG + chr6_1:12298130-12298149 None:intergenic 25.0%
! CTAAAGTCAAATTTATTGAC+AGG + chr6_1:12298366-12298385 None:intergenic 25.0%
! AAATCTCAAATACTGATATG+CGG + chr6_1:12298986-12299005 None:intergenic 25.0%
!!! TTAAAGCATTGTTATATGCA+GGG + chr6_1:12299090-12299109 None:intergenic 25.0%
! ATGAAACAATAGTGTTATCA+TGG - chr6_1:12299168-12299187 Msa0875640:intron 25.0%
!! TCAAAAAGAGTTTCCTTTTA+TGG - chr6_1:12299322-12299341 Msa0875640:intron 25.0%
!!! TAGACCATTTAACTTTTTCT+AGG - chr6_1:12299943-12299962 Msa0875640:intron 25.0%
! TTTGTGTATGATACATCTAT+AGG + chr6_1:12299977-12299996 None:intergenic 25.0%
! TATGAGAAAGGAAAAATTGT+TGG - chr6_1:12300226-12300245 Msa0875640:CDS 25.0%
! AATGTATTATGGCTATAGAA+AGG - chr6_1:12300288-12300307 Msa0875640:CDS 25.0%
! GATCATATATAACTCCATAT+TGG + chr6_1:12300479-12300498 None:intergenic 25.0%
!! AAATTTTGTATTCCTCCAAT+TGG + chr6_1:12300501-12300520 None:intergenic 25.0%
! ATACAAAATTTCCCAAAAGA+AGG - chr6_1:12300510-12300529 Msa0875640:CDS 25.0%
!! TAGAGATGAATTTTGTTGAT+TGG - chr6_1:12300849-12300868 Msa0875640:five_prime_UTR 25.0%
! AAGCATTGCTAATGGTTTAT+AGG - chr6_1:12296377-12296396 Msa0875640:three_prime_UTR 30.0%
! AAGGGAAATGAAAGAAGTTT+TGG + chr6_1:12296468-12296487 None:intergenic 30.0%
AAAGAGAGAAAACAAGAGAA+AGG + chr6_1:12296510-12296529 None:intergenic 30.0%
!! TTGGAACTTCATTTTTGGAA+GGG + chr6_1:12296541-12296560 None:intergenic 30.0%
! TTCTCTTGGAACTTCATTTT+TGG + chr6_1:12296546-12296565 None:intergenic 30.0%
AAACAAAGGATAAGACAAAG+GGG + chr6_1:12296658-12296677 None:intergenic 30.0%
CAAACAAAGGATAAGACAAA+GGG + chr6_1:12296659-12296678 None:intergenic 30.0%
AGAAATGATGAACCAAACAA+AGG + chr6_1:12296672-12296691 None:intergenic 30.0%
GAATCAACATTTGAAGAGTT+TGG + chr6_1:12296720-12296739 None:intergenic 30.0%
!!! TGACATTTTTAGTGGTGAAT+GGG - chr6_1:12296782-12296801 Msa0875640:CDS 30.0%
! TAATATGGTCCTTTTGGATT+TGG + chr6_1:12296810-12296829 None:intergenic 30.0%
! TTTGTGTAATATGGTCCTTT+TGG + chr6_1:12296816-12296835 None:intergenic 30.0%
CATCAAAATTGCATGAAGTA+TGG - chr6_1:12296861-12296880 Msa0875640:CDS 30.0%
AAAATTGCATGAAGTATGGT+AGG - chr6_1:12296865-12296884 Msa0875640:CDS 30.0%
!! CATTGATTTGTCTTCTATCA+AGG - chr6_1:12297030-12297049 Msa0875640:CDS 30.0%
TCAATCTATAAGCTTGATCA+AGG + chr6_1:12297340-12297359 None:intergenic 30.0%
! AGTCTCAACTCATTTGAAAT+AGG + chr6_1:12297392-12297411 None:intergenic 30.0%
CATTTGTCAAAAGAAATGGA+AGG - chr6_1:12297417-12297436 Msa0875640:intron 30.0%
AGAAATGGAAGGTTTCATTT+AGG - chr6_1:12297428-12297447 Msa0875640:intron 30.0%
AGTTAGAGCAAAACTCTATA+TGG + chr6_1:12297603-12297622 None:intergenic 30.0%
! TTTTGCTCTAACTTTAGATG+AGG - chr6_1:12297610-12297629 Msa0875640:intron 30.0%
ATGTATCTCACAAAATGAAG+AGG + chr6_1:12297733-12297752 None:intergenic 30.0%
! TAGACTTTTACTCTAAGTGT+CGG - chr6_1:12298261-12298280 Msa0875640:intron 30.0%
!! GTGTATATTTTATGAGTTGG+AGG + chr6_1:12298796-12298815 None:intergenic 30.0%
! ATTCAATTGACTTATCCCAT+AGG + chr6_1:12298861-12298880 None:intergenic 30.0%
! TTTTGGTCAAGTAACTTTAG+TGG - chr6_1:12299009-12299028 Msa0875640:intron 30.0%
CACATTGTAAAGTGAATAAG+TGG - chr6_1:12299040-12299059 Msa0875640:intron 30.0%
!! TAAAGCATTGTTATATGCAG+GGG + chr6_1:12299089-12299108 None:intergenic 30.0%
!! GTTAAAGCATTGTTATATGC+AGG + chr6_1:12299091-12299110 None:intergenic 30.0%
! TTTTAATGGGAAATGCTAAC+CGG - chr6_1:12299213-12299232 Msa0875640:intron 30.0%
ACTGGTTAAGGATACTAAAA+AGG - chr6_1:12299248-12299267 Msa0875640:intron 30.0%
ACTGGTTAATGATACCAAAA+AGG + chr6_1:12299357-12299376 None:intergenic 30.0%
TAAAATAAGGTCATGCTAAC+CGG + chr6_1:12299392-12299411 None:intergenic 30.0%
ATCTTTGGATTGTATTCTAG+TGG + chr6_1:12299771-12299790 None:intergenic 30.0%
CAAATAATTTAGAGGGTCAT+GGG + chr6_1:12299800-12299819 None:intergenic 30.0%
TCAAATAATTTAGAGGGTCA+TGG + chr6_1:12299801-12299820 None:intergenic 30.0%
!! ACCATTTAACTTTTTCTAGG+TGG - chr6_1:12299946-12299965 Msa0875640:intron 30.0%
TCCACCTAGAAAAAGTTAAA+TGG + chr6_1:12299950-12299969 None:intergenic 30.0%
!! TTAACTTTTTCTAGGTGGAA+TGG - chr6_1:12299951-12299970 Msa0875640:intron 30.0%
AAGATGACTATTTCATGAGA+TGG - chr6_1:12299996-12300015 Msa0875640:intron 30.0%
!! TGTTGAGTTTTGACAAGAAA+GGG + chr6_1:12300064-12300083 None:intergenic 30.0%
!! TTGTTGAGTTTTGACAAGAA+AGG + chr6_1:12300065-12300084 None:intergenic 30.0%
ACTCAACAAGAAAATTCAGA+TGG - chr6_1:12300076-12300095 Msa0875640:intron 30.0%
TTTGACTATGTCATACTCAA+TGG - chr6_1:12300172-12300191 Msa0875640:CDS 30.0%
ATACCATTCTCAAAATGAGA+TGG + chr6_1:12300388-12300407 None:intergenic 30.0%
!! CTCATTTTGAGAATGGTATA+TGG - chr6_1:12300389-12300408 Msa0875640:CDS 30.0%
TAAGCCATTTAAGAGTAATG+AGG - chr6_1:12300438-12300457 Msa0875640:CDS 30.0%
GGAGTTATATATGATCCAAT+TGG - chr6_1:12300483-12300502 Msa0875640:CDS 30.0%
GTTATATATGATCCAATTGG+AGG - chr6_1:12300486-12300505 Msa0875640:CDS 30.0%
!! ATTTCTTTTGGCCTTCTTTT+GGG + chr6_1:12300524-12300543 None:intergenic 30.0%
! TACAATGTCACATTTTCTTG+TGG + chr6_1:12300628-12300647 None:intergenic 30.0%
TGTATAACGATTGTGTTCAT+TGG - chr6_1:12300644-12300663 Msa0875640:five_prime_UTR 30.0%
AAATCACTCCATGTATCTAT+AGG + chr6_1:12300682-12300701 None:intergenic 30.0%
TAAAACTGAGAACATCGCAA+AGG - chr6_1:12296291-12296310 Msa0875640:three_prime_UTR 35.0%
AAAACTGAGAACATCGCAAA+GGG - chr6_1:12296292-12296311 Msa0875640:three_prime_UTR 35.0%
!! ACAACTTGAAGCATTGCTAA+TGG - chr6_1:12296369-12296388 Msa0875640:three_prime_UTR 35.0%
! GAAAACAAGAGAAAGGTGTA+GGG + chr6_1:12296503-12296522 None:intergenic 35.0%
! AGAAAACAAGAGAAAGGTGT+AGG + chr6_1:12296504-12296523 None:intergenic 35.0%
!! CTTCATTTTTGGAAGGGTTA+TGG + chr6_1:12296535-12296554 None:intergenic 35.0%
!! CTTGGAACTTCATTTTTGGA+AGG + chr6_1:12296542-12296561 None:intergenic 35.0%
CCAAACAAAGGATAAGACAA+AGG + chr6_1:12296660-12296679 None:intergenic 35.0%
CCTTTGTCTTATCCTTTGTT+TGG - chr6_1:12296657-12296676 Msa0875640:CDS 35.0%
!!! GTGACATTTTTAGTGGTGAA+TGG - chr6_1:12296781-12296800 Msa0875640:CDS 35.0%
! ATTGGTAGTTCACACTCATT+TGG + chr6_1:12296924-12296943 None:intergenic 35.0%
! GGAAAATCTATGGCTTTTGT+TGG - chr6_1:12296978-12296997 Msa0875640:CDS 35.0%
!! TGCTTTGGTGTTAAGTGATT+TGG - chr6_1:12297172-12297191 Msa0875640:CDS 35.0%
GCTTCAATGACAATTCATAG+AGG - chr6_1:12297276-12297295 Msa0875640:intron 35.0%
GTCTTAGGTTCGATTTATTC+TGG - chr6_1:12297556-12297575 Msa0875640:intron 35.0%
ATTGGTCCCATTGAATTAGT+CGG - chr6_1:12297654-12297673 Msa0875640:intron 35.0%
ATCTGACCGACTAATTCAAT+GGG + chr6_1:12297663-12297682 None:intergenic 35.0%
TATCTGACCGACTAATTCAA+TGG + chr6_1:12297664-12297683 None:intergenic 35.0%
TAATAAACCCCACAAAGTTG+AGG - chr6_1:12297706-12297725 Msa0875640:intron 35.0%
TATGCACACAAATTGGAGAT+TGG + chr6_1:12297901-12297920 None:intergenic 35.0%
ATCTGACTATGCACACAAAT+TGG + chr6_1:12297908-12297927 None:intergenic 35.0%
!! ACTAAGAGATTGGCTTCAAA+TGG - chr6_1:12298014-12298033 Msa0875640:intron 35.0%
ATTTGTGATGTTTGATTGGG+AGG + chr6_1:12298126-12298145 None:intergenic 35.0%
GACAAATAAACCTCAATCTC+AGG - chr6_1:12298180-12298199 Msa0875640:intron 35.0%
TTAAATGAGTCCTGAGATTG+AGG + chr6_1:12298193-12298212 None:intergenic 35.0%
ACACAAGTACATTTAGCCTA+TGG - chr6_1:12298842-12298861 Msa0875640:intron 35.0%
CACAAGTACATTTAGCCTAT+GGG - chr6_1:12298843-12298862 Msa0875640:intron 35.0%
ATTGTTATATGCAGGGGTAA+AGG + chr6_1:12299083-12299102 None:intergenic 35.0%
TCAATGTCTAACCAATGACA+AGG - chr6_1:12299643-12299662 Msa0875640:intron 35.0%
CTGTTATTGTACCTTGTCAT+TGG + chr6_1:12299657-12299676 None:intergenic 35.0%
AAACAAGAAGTTAAGCCCAA+AGG + chr6_1:12299726-12299745 None:intergenic 35.0%
CCATGGTGAAATTGTAACTT+GGG + chr6_1:12300027-12300046 None:intergenic 35.0%
CCTTTCTCATAGAATACCAT+TGG + chr6_1:12300217-12300236 None:intergenic 35.0%
CCAATGGTATTCTATGAGAA+AGG - chr6_1:12300214-12300233 Msa0875640:CDS 35.0%
! ATGGCTATAGAAAGGCTTTT+AGG - chr6_1:12300296-12300315 Msa0875640:CDS 35.0%
! TTAAGGGTGTGACATTTCTT+AGG - chr6_1:12300353-12300372 Msa0875640:CDS 35.0%
GAGAATGGTATATGGAATCA+AGG - chr6_1:12300397-12300416 Msa0875640:CDS 35.0%
AATGGTATATGGAATCAAGG+TGG - chr6_1:12300400-12300419 Msa0875640:CDS 35.0%
ATGGTATATGGAATCAAGGT+GGG - chr6_1:12300401-12300420 Msa0875640:CDS 35.0%
CTTGCCTCATTACTCTTAAA+TGG + chr6_1:12300445-12300464 None:intergenic 35.0%
CATTTAAGAGTAATGAGGCA+AGG - chr6_1:12300443-12300462 Msa0875640:CDS 35.0%
!! CATTTCTTTTGGCCTTCTTT+TGG + chr6_1:12300525-12300544 None:intergenic 35.0%
CAAAAGAAGGCCAAAAGAAA+TGG - chr6_1:12300523-12300542 Msa0875640:CDS 35.0%
CTTGCTAGAAATGTTGAAGA+TGG - chr6_1:12300702-12300721 Msa0875640:five_prime_UTR 35.0%
TAGAAATGTTGAAGATGGAG+AGG - chr6_1:12300707-12300726 Msa0875640:five_prime_UTR 35.0%
AGAAATGTTGAAGATGGAGA+GGG - chr6_1:12300708-12300727 Msa0875640:five_prime_UTR 35.0%
GTAGGGAAATAGGAGGATAA+GGG + chr6_1:12296486-12296505 None:intergenic 40.0%
TGTAGGGAAATAGGAGGATA+AGG + chr6_1:12296487-12296506 None:intergenic 40.0%
! AGAGAAAGGTGTAGGGAAAT+AGG + chr6_1:12296496-12296515 None:intergenic 40.0%
CATAGAGATGCTCTTTCTCT+TGG + chr6_1:12296560-12296579 None:intergenic 40.0%
!! CAAGAGAAAGAGCATCTCTA+TGG - chr6_1:12296558-12296577 Msa0875640:CDS 40.0%
CACTTCATGAACTCAGAATC+TGG + chr6_1:12296891-12296910 None:intergenic 40.0%
CAGATTCTGAGTTCATGAAG+TGG - chr6_1:12296889-12296908 Msa0875640:CDS 40.0%
! GCTTTTGTTGGAGATTCTGT+TGG - chr6_1:12296990-12297009 Msa0875640:CDS 40.0%
! GTGTTAAGTGATTTGGCATG+TGG - chr6_1:12297179-12297198 Msa0875640:CDS 40.0%
!!! CTTTTAATAGGTTGGCCTAG+TGG - chr6_1:12297499-12297518 Msa0875640:intron 40.0%
AAGATCTCAAACCAACCACT+AGG + chr6_1:12297517-12297536 None:intergenic 40.0%
!! TAGTGGTTGGTTTGAGATCT+TGG - chr6_1:12297516-12297535 Msa0875640:intron 40.0%
ATGGACTTGCACACTGAAAT+CGG + chr6_1:12297584-12297603 None:intergenic 40.0%
ATCCAGCCTCAACATTAAGT+AGG - chr6_1:12297769-12297788 Msa0875640:intron 40.0%
GTCAGACCTACTTAATGTTG+AGG + chr6_1:12297778-12297797 None:intergenic 40.0%
! AAATGGACTTGTCATCTCTG+AGG + chr6_1:12298296-12298315 None:intergenic 40.0%
TGCTAAGATTCCACTTCTTG+TGG + chr6_1:12298618-12298637 None:intergenic 40.0%
TTAGCACGAGATGTAAACTC+TGG - chr6_1:12298632-12298651 Msa0875640:intron 40.0%
! AAGTGAATAAGTGGAGTGTC+TGG - chr6_1:12299049-12299068 Msa0875640:intron 40.0%
GTGTCTCTGTGAAGATAACT+CGG + chr6_1:12299121-12299140 None:intergenic 40.0%
ATGACTTAAGCTCGATCATC+TGG + chr6_1:12299446-12299465 None:intergenic 40.0%
AGTCATTAATGAGCTCTGCT+AGG - chr6_1:12299460-12299479 Msa0875640:intron 40.0%
AACAGCATGATGCTAACATG+TGG - chr6_1:12299672-12299691 Msa0875640:intron 40.0%
CCCAAGTTACAATTTCACCA+TGG - chr6_1:12300024-12300043 Msa0875640:intron 40.0%
GCCATGGTGAAATTGTAACT+TGG + chr6_1:12300028-12300047 None:intergenic 40.0%
ATTTCACCATGGCTGCTTAT+TGG - chr6_1:12300035-12300054 Msa0875640:intron 40.0%
AAGATTGTAGAGACCAGTGT+GGG + chr6_1:12300107-12300126 None:intergenic 40.0%
AAAGATTGTAGAGACCAGTG+TGG + chr6_1:12300108-12300127 None:intergenic 40.0%
GACTATGTCATACTCAATGG+AGG - chr6_1:12300175-12300194 Msa0875640:CDS 40.0%
TCATACTCAATGGAGGACAT+TGG - chr6_1:12300182-12300201 Msa0875640:CDS 40.0%
!! ACATTGGTTCTACAAGCCAA+TGG - chr6_1:12300198-12300217 Msa0875640:CDS 40.0%
!! GCACCATCTCATTTTGAGAA+TGG - chr6_1:12300382-12300401 Msa0875640:CDS 40.0%
ATCAAGGTGGGAATTGTTTG+AGG - chr6_1:12300413-12300432 Msa0875640:CDS 40.0%
AGTAATGAGGCAAGGTTAGA+AGG - chr6_1:12300451-12300470 Msa0875640:CDS 40.0%
GTAATGAGGCAAGGTTAGAA+GGG - chr6_1:12300452-12300471 Msa0875640:CDS 40.0%
AAGGTTAGAAGGGACCAATA+TGG - chr6_1:12300462-12300481 Msa0875640:CDS 40.0%
GCAATGTTATTGAGACCAGA+TGG - chr6_1:12300577-12300596 Msa0875640:CDS 40.0%
TATCTACTAGGATGACCATC+TGG + chr6_1:12300595-12300614 None:intergenic 40.0%
GATGGTCATCCTAGTAGATA+CGG - chr6_1:12300595-12300614 Msa0875640:CDS 40.0%
! TTGTGTTCATTGGTGTTTGC+CGG - chr6_1:12300654-12300673 Msa0875640:five_prime_UTR 40.0%
! GAAAGGTGTAGGGAAATAGG+AGG + chr6_1:12296493-12296512 None:intergenic 45.0%
GAATGGGTGCCAAATCCAAA+AGG - chr6_1:12296798-12296817 Msa0875640:CDS 45.0%
CTGAGTTCATGAAGTGGAGA+TGG - chr6_1:12296895-12296914 Msa0875640:CDS 45.0%
!! TAATAGGTTGGCCTAGTGGT+TGG - chr6_1:12297503-12297522 Msa0875640:intron 45.0%
! TGGTTTGAGATCTTGGAGTG+TGG - chr6_1:12297523-12297542 Msa0875640:intron 45.0%
TGTGGAGCTTTCAAGGTCTT+AGG - chr6_1:12297541-12297560 Msa0875640:intron 45.0%
TTAGATGAGGCTTCTGCAAG+TGG - chr6_1:12297623-12297642 Msa0875640:intron 45.0%
AAGAGGACCTCAACTTTGTG+GGG + chr6_1:12297716-12297735 None:intergenic 45.0%
GAAGAGGACCTCAACTTTGT+GGG + chr6_1:12297717-12297736 None:intergenic 45.0%
TGAAGAGGACCTCAACTTTG+TGG + chr6_1:12297718-12297737 None:intergenic 45.0%
GACCTACTTAATGTTGAGGC+TGG + chr6_1:12297774-12297793 None:intergenic 45.0%
GCACACAAATTGGAGATTGG+TGG + chr6_1:12297898-12297917 None:intergenic 45.0%
!! GATGGACTGAAGCACACAAA+TGG + chr6_1:12298313-12298332 None:intergenic 45.0%
CACATTCCATGTCCCTAACA+AGG - chr6_1:12298659-12298678 Msa0875640:intron 45.0%
!! GTGTTCTTGTGGCCTTGTTA+GGG + chr6_1:12298674-12298693 None:intergenic 45.0%
!! TGTGTTCTTGTGGCCTTGTT+AGG + chr6_1:12298675-12298694 None:intergenic 45.0%
GACTTGAGACTGTGTTCTTG+TGG + chr6_1:12298685-12298704 None:intergenic 45.0%
! TGAGTTGGAGGCTTCAACTT+TGG + chr6_1:12298784-12298803 None:intergenic 45.0%
AGTATCCTTAACCAGTGCTC+CGG + chr6_1:12299244-12299263 None:intergenic 45.0%
GGTCATGGGTCTTTCATCTT+TGG + chr6_1:12299786-12299805 None:intergenic 45.0%
GGCAAATGACCGTATCTACT+AGG + chr6_1:12300607-12300626 None:intergenic 45.0%
! TGTGTTCATTGGTGTTTGCC+GGG - chr6_1:12300655-12300674 Msa0875640:five_prime_UTR 45.0%
!!! ATTAAAAGTATTTTAATAAA+GGG + chr6_1:12297487-12297506 None:intergenic 5.0%
!!! TATTAAAAGTATTTTAATAA+AGG + chr6_1:12297488-12297507 None:intergenic 5.0%
!!! TTTATTAAAATACTTTTAAT+AGG - chr6_1:12297487-12297506 Msa0875640:intron 5.0%
CTTGGAGTGTGGAGCTTTCA+AGG - chr6_1:12297534-12297553 Msa0875640:intron 50.0%
ATGAGGCTTCTGCAAGTGGA+AGG - chr6_1:12297627-12297646 Msa0875640:intron 50.0%
CTGCAAGTGGAAGGTGAGAT+TGG - chr6_1:12297636-12297655 Msa0875640:intron 50.0%
GCAAAGCATGCCACAAGAAG+TGG - chr6_1:12298605-12298624 Msa0875640:intron 50.0%
!! TTGTGGCCTTGTTAGGGACA+TGG + chr6_1:12298668-12298687 None:intergenic 50.0%
GTATCCTTAACCAGTGCTCC+GGG + chr6_1:12299243-12299262 None:intergenic 50.0%
GGTATCATTAACCAGTGCCC+CGG - chr6_1:12299361-12299380 Msa0875640:intron 50.0%
GTATCATTAACCAGTGCCCC+GGG - chr6_1:12299362-12299381 Msa0875640:intron 50.0%
TATCATTAACCAGTGCCCCG+GGG - chr6_1:12299363-12299382 Msa0875640:intron 50.0%
TTGTAGAGACCAGTGTGGGT+TGG + chr6_1:12300103-12300122 None:intergenic 50.0%
! GTGTTCATTGGTGTTTGCCG+GGG - chr6_1:12300656-12300675 Msa0875640:five_prime_UTR 50.0%
CTCCATGTATCTATAGGCCC+CGG + chr6_1:12300676-12300695 None:intergenic 50.0%
GGGCTAAGTCTAAGAGAGAG+AGG - chr6_1:12300728-12300747 Msa0875640:five_prime_UTR 50.0%
GAAATGCTAACCGGTGCTCC+CGG - chr6_1:12299222-12299241 Msa0875640:intron 55.0%
ATCATTAACCAGTGCCCCGG+GGG - chr6_1:12299364-12299383 Msa0875640:intron 55.0%
GGGTGTCCAATAAGCAGCCA+TGG + chr6_1:12300044-12300063 None:intergenic 55.0%
TCAGATGGACCAACCCACAC+TGG - chr6_1:12300091-12300110 Msa0875640:intron 55.0%
TGCCGGGGCCTATAGATACA+TGG - chr6_1:12300671-12300690 Msa0875640:five_prime_UTR 55.0%
!! TGCTCCCGGAGCACTGGTTA+AGG - chr6_1:12299236-12299255 Msa0875640:intron 60.0%
! AACCAGTGCTCCGGGAGCAC+CGG + chr6_1:12299235-12299254 None:intergenic 65.0%
TCATGCTAACCGGTGCCCCC+GGG + chr6_1:12299382-12299401 None:intergenic 65.0%
GTCATGCTAACCGGTGCCCC+CGG + chr6_1:12299383-12299402 None:intergenic 65.0%
AACCGGTGCTCCCGGAGCAC+TGG - chr6_1:12299230-12299249 Msa0875640:intron 70.0%
CATGCTAACCGGTGCCCCCG+GGG + chr6_1:12299381-12299400 None:intergenic 70.0%
! AACCAGTGCCCCGGGGGCAC+CGG - chr6_1:12299370-12299389 Msa0875640:intron 75.0%
! AACCGGTGCCCCCGGGGCAC+TGG + chr6_1:12299375-12299394 None:intergenic 80.0%
Chromosome Type Strat End Strand Name
chr6_1 gene 12296290 12300899 12296290 ID=Msa0875640;Name=Msa0875640
chr6_1 mRNA 12296290 12300899 12296290 ID=Msa0875640-mRNA-1;Parent=Msa0875640;Name=Msa0875640-mRNA-1;_AED=0.14;_eAED=0.14;_QI=259|1|1|1|1|1|2|134|434
chr6_1 exon 12296290 12297224 12296290 ID=Msa0875640-mRNA-1:exon:3714;Parent=Msa0875640-mRNA-1
chr6_1 exon 12300137 12300899 12300137 ID=Msa0875640-mRNA-1:exon:3713;Parent=Msa0875640-mRNA-1
chr6_1 five_prime_UTR 12300641 12300899 12300641 ID=Msa0875640-mRNA-1:five_prime_utr;Parent=Msa0875640-mRNA-1
chr6_1 CDS 12300137 12300640 12300137 ID=Msa0875640-mRNA-1:cds;Parent=Msa0875640-mRNA-1
chr6_1 CDS 12296424 12297224 12296424 ID=Msa0875640-mRNA-1:cds;Parent=Msa0875640-mRNA-1
chr6_1 three_prime_UTR 12296290 12296423 12296290 ID=Msa0875640-mRNA-1:three_prime_utr;Parent=Msa0875640-mRNA-1
Gene Sequence

>Msa0875640

ATGAAGTTCCAAGAGAAAGAGCATCTCTATGGAAACAATAACAAAAAACAAATGTTACCAAAAATAATTTTATTAGCAATCTTTGTCATAATTATAGTTCTTGTCACCCCTTTGTCTTATCCTTTGTTTGGTTCATCATTTCTCTTGATGATGAGCAAGTCTAAAGAACCAAACTCTTCAAATGTTGATTCAATTGAGAAAGAAAATTTACCTTCAACATCTTTGAAAAATTGTGACATTTTTAGTGGTGAATGGGTGCCAAATCCAAAAGGACCATATTACACAAACAAAACATGTTGGGCAATTCATGAGCATCAAAATTGCATGAAGTATGGTAGGCCAGATTCTGAGTTCATGAAGTGGAGATGGAAGCCAAATGAGTGTGAACTACCAATTTTCAATCCTTTTCAATTTCTTGAAATTGTTAGAGGAAAATCTATGGCTTTTGTTGGAGATTCTGTTGGTAGAAATCACATGCAGTCATTGATTTGTCTTCTATCAAGGGTGGAATGGCCTATAGATGTATCATACACAAAAGATGACTATTTCATGAGATGGAAATACCCAAGTTACAATTTCACCATGGCTGCTTATTGGACACCCTTTCTTGTCAAAACTCAACAAGAAAATTCAGATGGACCAACCCACACTGGTCTCTACAATCTTTACCTAGATGAATTTGATGAAAAATGGACATCACAAATTGAAGATTTTGACTATGTCATACTCAATGGAGGACATTGGTTCTACAAGCCAATGGTATTCTATGAGAAAGGAAAAATTGTTGGATGTCATTATTGTCTCTTAGAAAATGTCACTGATTTAACAATGTATTATGGCTATAGAAAGGCTTTTAGGACTGCATTTAGAGCCTTAAATAGCTTAGAAAATTTTAAGGGTGTGACATTTCTTAGGACATTCGCACCATCTCATTTTGAGAATGGTATATGGAATCAAGGTGGGAATTGTTTGAGGACTAAGCCATTTAAGAGTAATGAGGCAAGGTTAGAAGGGACCAATATGGAGTTATATATGATCCAATTGGAGGAATACAAAATTTCCCAAAAGAAGGCCAAAAGAAATGGTTTGAAATTTAGGTTGCTTGATACAACACAAGCAATGTTATTGAGACCAGATGGTCATCCTAGTAGATACGGTCATTTGCCACAAGAAAATGTGACATTGTATAACGATTGTGTTCATTGGTGTTTGCCGGGGCCTATAGATACATGGAGTGATTTCTTGCTAGAAATGTTGAAGATGGAGAGGGCTAAGTCTAAGAGAGAGAGGCGTCAGATAGATTGA
Protein sequence

>Msa0875640

MKFQEKEHLYGNNNKKQMLPKIILLAIFVIIIVLVTPLSYPLFGSSFLLMMSKSKEPNSSNVDSIEKENLPSTSLKNCDIFSGEWVPNPKGPYYTNKTCWAIHEHQNCMKYGRPDSEFMKWRWKPNECELPIFNPFQFLEIVRGKSMAFVGDSVGRNHMQSLICLLSRVEWPIDVSYTKDDYFMRWKYPSYNFTMAAYWTPFLVKTQQENSDGPTHTGLYNLYLDEFDEKWTSQIEDFDYVILNGGHWFYKPMVFYEKGKIVGCHYCLLENVTDLTMYYGYRKAFRTAFRALNSLENFKGVTFLRTFAPSHFENGIWNQGGNCLRTKPFKSNEARLEGTNMELYMIQLEEYKISQKKAKRNGLKFRLLDTTQAMLLRPDGHPSRYGHLPQENVTLYNDCVHWCLPGPIDTWSDFLLEMLKMERAKSKRERRQID*