Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0977330 | XP_013451235.1 | 98.750 | 240 | 3 | 0 | 1 | 240 | 195 | 434 | 3.03e-177 | 504 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0977330 | sp|Q9LFT0|TBL19_ARATH | 62.771 | 231 | 85 | 1 | 1 | 231 | 186 | 415 | 8.39e-110 | 325 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0977330 | A0A072UHK1 | 98.750 | 240 | 3 | 0 | 1 | 240 | 195 | 434 | 1.45e-177 | 504 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0875640 | Msa0977330 | 0.898818 | 3.652571e-77 | -8.615850e-47 |
| Msa0940850 | Msa0977330 | 0.943561 | 9.630407e-103 | -8.615850e-47 |
| Msa0977330 | Msa1198870 | 0.808864 | 2.511998e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0977330 | MtrunA17_Chr6g0456691 | 98.750 | 240 | 3 | 0 | 1 | 240 | 195 | 434 | 0.0 | 504 |
| Msa0977330 | MtrunA17_Chr7g0221281 | 75.325 | 231 | 57 | 0 | 1 | 231 | 12 | 242 | 6.27e-140 | 392 |
| Msa0977330 | MtrunA17_Chr6g0456681 | 56.897 | 232 | 100 | 0 | 1 | 232 | 184 | 415 | 4.24e-106 | 313 |
| Msa0977330 | MtrunA17_Chr2g0283851 | 48.707 | 232 | 104 | 8 | 1 | 225 | 177 | 400 | 3.05e-72 | 226 |
| Msa0977330 | MtrunA17_Chr5g0414041 | 43.162 | 234 | 121 | 6 | 1 | 226 | 205 | 434 | 2.40e-64 | 206 |
| Msa0977330 | MtrunA17_Chr8g0347321 | 41.048 | 229 | 130 | 2 | 1 | 225 | 212 | 439 | 1.10e-61 | 199 |
| Msa0977330 | MtrunA17_Chr3g0140371 | 41.525 | 236 | 123 | 7 | 1 | 226 | 131 | 361 | 8.49e-61 | 195 |
| Msa0977330 | MtrunA17_Chr8g0387921 | 41.739 | 230 | 128 | 3 | 1 | 225 | 191 | 419 | 2.74e-60 | 195 |
| Msa0977330 | MtrunA17_Chr8g0391481 | 38.554 | 249 | 133 | 7 | 1 | 236 | 142 | 383 | 5.34e-59 | 191 |
| Msa0977330 | MtrunA17_Chr5g0414061 | 41.525 | 236 | 120 | 8 | 1 | 226 | 212 | 439 | 7.00e-58 | 189 |
| Msa0977330 | MtrunA17_Chr6g0451321 | 39.827 | 231 | 132 | 4 | 1 | 228 | 234 | 460 | 2.62e-57 | 189 |
| Msa0977330 | MtrunA17_Chr7g0226991 | 38.494 | 239 | 127 | 7 | 1 | 226 | 172 | 403 | 1.54e-56 | 185 |
| Msa0977330 | MtrunA17_Chr5g0414091 | 37.607 | 234 | 132 | 7 | 2 | 226 | 204 | 432 | 1.71e-51 | 172 |
| Msa0977330 | MtrunA17_Chr5g0414081 | 38.942 | 208 | 116 | 6 | 37 | 234 | 2 | 208 | 7.84e-51 | 164 |
| Msa0977330 | MtrunA17_Chr5g0414051 | 37.131 | 237 | 134 | 9 | 1 | 226 | 189 | 421 | 5.97e-50 | 169 |
| Msa0977330 | MtrunA17_Chr1g0188191 | 33.051 | 236 | 143 | 6 | 5 | 228 | 352 | 584 | 5.03e-37 | 136 |
| Msa0977330 | MtrunA17_Chr6g0476041 | 31.064 | 235 | 149 | 5 | 5 | 228 | 285 | 517 | 8.77e-33 | 124 |
| Msa0977330 | MtrunA17_Chr7g0259711 | 31.474 | 251 | 135 | 9 | 4 | 239 | 218 | 446 | 3.52e-24 | 100 |
| Msa0977330 | MtrunA17_Chr6g0455901 | 27.928 | 222 | 124 | 5 | 26 | 232 | 223 | 423 | 4.63e-24 | 99.4 |
| Msa0977330 | MtrunA17_Chr4g0049421 | 27.434 | 226 | 136 | 4 | 13 | 225 | 182 | 392 | 2.15e-21 | 91.7 |
| Msa0977330 | MtrunA17_Chr2g0287901 | 30.973 | 226 | 140 | 10 | 4 | 225 | 224 | 437 | 1.72e-20 | 89.7 |
| Msa0977330 | MtrunA17_Chr1g0175671 | 30.000 | 210 | 103 | 7 | 38 | 228 | 328 | 512 | 4.04e-20 | 88.6 |
| Msa0977330 | MtrunA17_Chr4g0070341 | 27.826 | 230 | 135 | 8 | 4 | 225 | 265 | 471 | 1.59e-19 | 87.0 |
| Msa0977330 | MtrunA17_Chr4g0071391 | 26.180 | 233 | 139 | 9 | 10 | 233 | 246 | 454 | 5.70e-18 | 82.4 |
| Msa0977330 | MtrunA17_Chr7g0258851 | 29.717 | 212 | 121 | 8 | 38 | 238 | 406 | 600 | 2.93e-17 | 80.5 |
| Msa0977330 | MtrunA17_Chr7g0269991 | 29.048 | 210 | 120 | 7 | 28 | 230 | 285 | 472 | 1.41e-16 | 78.2 |
| Msa0977330 | MtrunA17_Chr8g0384421 | 28.426 | 197 | 98 | 6 | 44 | 225 | 304 | 472 | 2.00e-16 | 77.8 |
| Msa0977330 | MtrunA17_Chr8g0368461 | 27.897 | 233 | 135 | 9 | 6 | 226 | 319 | 530 | 1.00e-15 | 75.9 |
| Msa0977330 | MtrunA17_Chr7g0275501 | 52.239 | 67 | 29 | 2 | 160 | 224 | 3 | 68 | 3.23e-15 | 68.2 |
| Msa0977330 | MtrunA17_Chr7g0243301 | 29.258 | 229 | 141 | 10 | 4 | 221 | 187 | 405 | 1.01e-14 | 72.8 |
| Msa0977330 | MtrunA17_Chr3g0113671 | 27.586 | 232 | 141 | 10 | 4 | 221 | 227 | 445 | 1.06e-14 | 72.8 |
| Msa0977330 | MtrunA17_Chr4g0005491 | 28.821 | 229 | 142 | 10 | 4 | 221 | 185 | 403 | 3.72e-14 | 71.2 |
| Msa0977330 | MtrunA17_Chr8g0360521 | 24.691 | 243 | 137 | 10 | 4 | 225 | 192 | 409 | 4.94e-13 | 67.8 |
| Msa0977330 | MtrunA17_Chr5g0437291 | 27.155 | 232 | 142 | 10 | 4 | 221 | 289 | 507 | 6.10e-13 | 67.8 |
| Msa0977330 | MtrunA17_Chr3g0105301 | 26.068 | 234 | 147 | 9 | 1 | 225 | 160 | 376 | 8.40e-13 | 67.0 |
| Msa0977330 | MtrunA17_Chr1g0178081 | 33.588 | 131 | 72 | 5 | 103 | 225 | 218 | 341 | 8.51e-13 | 67.0 |
| Msa0977330 | MtrunA17_Chr4g0006991 | 27.004 | 237 | 142 | 11 | 4 | 225 | 207 | 427 | 1.57e-11 | 63.5 |
| Msa0977330 | MtrunA17_Chr5g0437601 | 25.210 | 238 | 145 | 10 | 4 | 225 | 204 | 424 | 4.63e-11 | 62.0 |
| Msa0977330 | MtrunA17_Chr8g0384151 | 24.215 | 223 | 143 | 9 | 8 | 228 | 221 | 419 | 6.02e-11 | 61.6 |
| Msa0977330 | MtrunA17_Chr2g0283581 | 28.139 | 231 | 128 | 9 | 4 | 227 | 161 | 360 | 7.40e-11 | 61.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0977330 | AT5G15900.1 | 62.771 | 231 | 85 | 1 | 1 | 231 | 186 | 415 | 8.53e-111 | 325 |
| Msa0977330 | AT5G15900.2 | 62.771 | 231 | 85 | 1 | 1 | 231 | 205 | 434 | 1.55e-110 | 325 |
| Msa0977330 | AT3G02440.1 | 55.702 | 228 | 98 | 3 | 1 | 226 | 243 | 469 | 8.95e-94 | 283 |
| Msa0977330 | AT3G02440.2 | 55.702 | 228 | 98 | 3 | 1 | 226 | 251 | 477 | 9.22e-94 | 283 |
| Msa0977330 | AT5G15890.1 | 51.528 | 229 | 103 | 4 | 1 | 228 | 304 | 525 | 3.55e-90 | 276 |
| Msa0977330 | AT3G28150.1 | 38.095 | 231 | 138 | 3 | 1 | 229 | 187 | 414 | 2.17e-58 | 191 |
| Msa0977330 | AT4G01080.1 | 44.082 | 245 | 104 | 10 | 1 | 229 | 208 | 435 | 1.45e-55 | 184 |
| Msa0977330 | AT1G01430.1 | 39.184 | 245 | 135 | 7 | 1 | 235 | 216 | 456 | 1.84e-55 | 184 |
| Msa0977330 | AT1G70230.1 | 38.261 | 230 | 124 | 6 | 1 | 226 | 197 | 412 | 9.43e-54 | 178 |
| Msa0977330 | AT4G23790.1 | 37.069 | 232 | 138 | 5 | 1 | 225 | 197 | 427 | 2.95e-52 | 175 |
| Msa0977330 | AT4G11090.1 | 34.746 | 236 | 146 | 5 | 1 | 230 | 197 | 430 | 3.40e-46 | 159 |
| Msa0977330 | AT4G25360.1 | 31.148 | 244 | 155 | 5 | 1 | 232 | 289 | 531 | 4.31e-35 | 131 |
| Msa0977330 | AT4G25360.2 | 31.148 | 244 | 155 | 5 | 1 | 232 | 289 | 531 | 4.31e-35 | 131 |
| Msa0977330 | AT5G51640.1 | 29.461 | 241 | 156 | 5 | 1 | 228 | 252 | 491 | 1.03e-32 | 124 |
| Msa0977330 | AT5G64470.3 | 31.250 | 224 | 126 | 7 | 11 | 225 | 190 | 394 | 1.70e-25 | 103 |
| Msa0977330 | AT2G14530.1 | 28.182 | 220 | 123 | 6 | 26 | 230 | 212 | 411 | 5.28e-25 | 102 |
| Msa0977330 | AT3G06080.2 | 31.667 | 240 | 144 | 10 | 4 | 236 | 230 | 456 | 1.07e-24 | 102 |
| Msa0977330 | AT5G64470.2 | 30.870 | 230 | 125 | 8 | 11 | 225 | 190 | 400 | 3.82e-24 | 99.8 |
| Msa0977330 | AT3G11570.1 | 28.509 | 228 | 136 | 8 | 6 | 225 | 211 | 419 | 1.10e-20 | 90.5 |
| Msa0977330 | AT5G06230.2 | 28.261 | 230 | 134 | 9 | 6 | 225 | 156 | 364 | 4.54e-20 | 88.2 |
| Msa0977330 | AT5G06230.1 | 28.261 | 230 | 134 | 9 | 6 | 225 | 197 | 405 | 6.04e-20 | 88.2 |
| Msa0977330 | AT5G64020.1 | 29.046 | 241 | 130 | 10 | 4 | 225 | 190 | 408 | 1.47e-19 | 87.0 |
| Msa0977330 | AT5G19160.1 | 31.837 | 245 | 137 | 13 | 4 | 234 | 226 | 454 | 1.90e-19 | 87.0 |
| Msa0977330 | AT3G12060.1 | 28.800 | 250 | 143 | 10 | 4 | 239 | 323 | 551 | 1.48e-18 | 84.7 |
| Msa0977330 | AT5G06700.1 | 28.372 | 215 | 124 | 7 | 36 | 238 | 411 | 607 | 2.81e-17 | 80.9 |
| Msa0977330 | AT5G20590.1 | 27.155 | 232 | 136 | 9 | 8 | 228 | 273 | 482 | 3.32e-17 | 80.5 |
| Msa0977330 | AT5G49340.1 | 31.429 | 210 | 114 | 9 | 28 | 225 | 250 | 441 | 9.32e-17 | 79.3 |
| Msa0977330 | AT5G20680.6 | 26.957 | 230 | 137 | 9 | 4 | 225 | 251 | 457 | 2.49e-16 | 77.8 |
| Msa0977330 | AT5G20680.4 | 26.957 | 230 | 137 | 9 | 4 | 225 | 345 | 551 | 2.68e-16 | 78.2 |
| Msa0977330 | AT5G20680.1 | 26.957 | 230 | 137 | 9 | 4 | 225 | 345 | 551 | 2.68e-16 | 78.2 |
| Msa0977330 | AT5G20680.3 | 26.957 | 230 | 137 | 9 | 4 | 225 | 345 | 551 | 2.68e-16 | 78.2 |
| Msa0977330 | AT5G20680.5 | 26.957 | 230 | 137 | 9 | 4 | 225 | 345 | 551 | 2.68e-16 | 78.2 |
| Msa0977330 | AT5G20680.2 | 26.957 | 230 | 137 | 9 | 4 | 225 | 327 | 533 | 2.90e-16 | 77.8 |
| Msa0977330 | AT3G62390.1 | 28.972 | 214 | 116 | 9 | 28 | 229 | 286 | 475 | 3.98e-15 | 74.3 |
| Msa0977330 | AT1G73140.1 | 25.532 | 235 | 145 | 8 | 4 | 225 | 188 | 405 | 1.06e-12 | 67.4 |
| Msa0977330 | AT1G48880.1 | 28.141 | 199 | 111 | 9 | 30 | 225 | 270 | 439 | 1.38e-12 | 67.0 |
| Msa0977330 | AT1G29050.1 | 25.541 | 231 | 134 | 8 | 4 | 227 | 181 | 380 | 1.96e-11 | 63.5 |
| Msa0977330 | AT3G55990.1 | 25.431 | 232 | 146 | 10 | 4 | 221 | 261 | 479 | 2.55e-11 | 63.2 |
| Msa0977330 | AT5G01620.2 | 26.471 | 238 | 137 | 10 | 5 | 225 | 233 | 449 | 3.12e-11 | 63.2 |
| Msa0977330 | AT5G01620.1 | 26.471 | 238 | 137 | 10 | 5 | 225 | 233 | 449 | 3.12e-11 | 63.2 |
| Msa0977330 | AT5G01620.3 | 26.471 | 238 | 137 | 10 | 5 | 225 | 241 | 457 | 3.59e-11 | 62.8 |
| Msa0977330 | AT3G11030.1 | 25.833 | 240 | 142 | 11 | 4 | 225 | 227 | 448 | 3.73e-11 | 62.8 |
| Msa0977330 | AT2G40320.1 | 24.569 | 232 | 154 | 6 | 4 | 225 | 202 | 422 | 5.24e-11 | 62.4 |
Find 50 sgRNAs with CRISPR-Local
Find 63 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAAGAAATGGTTTGAAATTT+AGG | 0.143773 | 6_4:-12012889 | Msa0977330:CDS |
| ATTTCACCATGGCTGCTTAT+TGG | 0.198427 | 6_4:-12013390 | None:intergenic |
| CTTGCCTCATTACTCTTAAA+TGG | 0.206869 | 6_4:+12012983 | None:intergenic |
| ACTGATTTAACAATGTATTA+TGG | 0.295531 | 6_4:-12013148 | Msa0977330:CDS |
| TTAAGGGTGTGACATTTCTT+AGG | 0.298839 | 6_4:-12013072 | Msa0977330:CDS |
| AGTAATGAGGCAAGGTTAGA+AGG | 0.313538 | 6_4:-12012974 | Msa0977330:CDS |
| AAATTTCAAACCATTTCTTT+TGG | 0.329594 | 6_4:+12012892 | None:intergenic |
| TTGTGTTCATTGGTGTTTGC+CGG | 0.346366 | 6_4:-12012771 | Msa0977330:CDS |
| CAAAAGAAGGCCAAAAGAAA+TGG | 0.396468 | 6_4:-12012902 | Msa0977330:CDS |
| TATTTGACGCCTCTCTCTCT+TGG | 0.416138 | 6_4:+12012688 | None:intergenic |
| TGTATAATGATTGTGTTCAT+TGG | 0.428103 | 6_4:-12012781 | Msa0977330:CDS |
| AAATCACTCCATGTATCTAT+AGG | 0.439104 | 6_4:+12012746 | None:intergenic |
| TTTGACTATGTCATACTCAA+TGG | 0.443897 | 6_4:-12013253 | Msa0977330:CDS |
| CTTGCTAGAAATGTTGAAGA+TGG | 0.447896 | 6_4:-12012723 | Msa0977330:CDS |
| TGTGTTCATTGGTGTTTGCC+GGG | 0.463636 | 6_4:-12012770 | Msa0977330:CDS |
| GAGAATGGTATATGGAATCA+AGG | 0.466149 | 6_4:-12013028 | Msa0977330:CDS |
| CCTTTCTCATAGAATACCAT+TGG | 0.468622 | 6_4:+12013211 | None:intergenic |
| GGAGTTATATATGATCCAAT+TGG | 0.472009 | 6_4:-12012942 | Msa0977330:CDS |
| GATCATATATAACTCCATAT+TGG | 0.477273 | 6_4:+12012949 | None:intergenic |
| ATACAAAATTTCCCAAAAGA+AGG | 0.501845 | 6_4:-12012915 | Msa0977330:CDS |
| GGCAAATGACCGTATCTACT+AGG | 0.502399 | 6_4:+12012821 | None:intergenic |
| ATCAAGGTGGGAATTGTTTG+AGG | 0.502442 | 6_4:-12013012 | Msa0977330:CDS |
| CCAATGGTATTCTATGAGAA+AGG | 0.509194 | 6_4:-12013211 | Msa0977330:CDS |
| GTAATGAGGCAAGGTTAGAA+GGG | 0.526044 | 6_4:-12012973 | Msa0977330:CDS |
| AATGTATTATGGCTATAGAA+AGG | 0.534002 | 6_4:-12013137 | Msa0977330:CDS |
| CTCCATGTATCTATAGGCCC+CGG | 0.543072 | 6_4:+12012752 | None:intergenic |
| ATGGTATATGGAATCAAGGT+GGG | 0.552248 | 6_4:-12013024 | Msa0977330:CDS |
| TATCTACTAGGATGACCATC+TGG | 0.553489 | 6_4:+12012833 | None:intergenic |
| AAGGTTAGAAGGGACCAATA+TGG | 0.554657 | 6_4:-12012963 | Msa0977330:CDS |
| TAGAAATGTTGAAGATGGAG+AGG | 0.557876 | 6_4:-12012718 | Msa0977330:CDS |
| GTTATATATGATCCAATTGG+AGG | 0.568697 | 6_4:-12012939 | Msa0977330:CDS |
| GATGGTCATCCTAGTAGATA+CGG | 0.574936 | 6_4:-12012830 | Msa0977330:CDS |
| ACTCAACAAGAAAATTCAGA+TGG | 0.581680 | 6_4:-12013349 | Msa0977330:CDS |
| GGGTGTCCAATAAGCAGCCA+TGG | 0.591946 | 6_4:+12013384 | None:intergenic |
| TAAGCCATTTAAGAGTAATG+AGG | 0.603193 | 6_4:-12012987 | Msa0977330:CDS |
| GGGCTAAGTCCAAGAGAGAG+AGG | 0.603246 | 6_4:-12012697 | Msa0977330:CDS |
| ATACCATTCTCAAAATGAGA+TGG | 0.606970 | 6_4:+12013040 | None:intergenic |
| TGCCGGGGCCTATAGATACA+TGG | 0.612962 | 6_4:-12012754 | Msa0977330:CDS |
| GCAATGTTATTGAGACCAGA+TGG | 0.619557 | 6_4:-12012848 | Msa0977330:CDS |
| CATTTAAGAGTAATGAGGCA+AGG | 0.623526 | 6_4:-12012982 | Msa0977330:CDS |
| TCATACTCAATGGAGGACAT+TGG | 0.627466 | 6_4:-12013243 | Msa0977330:CDS |
| TCAGATGGACCAACCCACAC+TGG | 0.628911 | 6_4:-12013334 | Msa0977330:CDS |
| GACTATGTCATACTCAATGG+AGG | 0.630990 | 6_4:-12013250 | Msa0977330:CDS |
| GTGTTCATTGGTGTTTGCCG+GGG | 0.638635 | 6_4:-12012769 | Msa0977330:CDS |
| TTGTAGAGACCAGTGTGGGT+TGG | 0.646461 | 6_4:+12013325 | None:intergenic |
| AGAAATGTTGAAGATGGAGA+GGG | 0.651408 | 6_4:-12012717 | Msa0977330:CDS |
| AATGGTATATGGAATCAAGG+TGG | 0.651741 | 6_4:-12013025 | Msa0977330:CDS |
| ACATTGGTTCTACAAGCCAA+TGG | 0.660827 | 6_4:-12013227 | Msa0977330:CDS |
| AAGATTGTAGAGACCAGTGT+GGG | 0.682690 | 6_4:+12013321 | None:intergenic |
| AAAGATTGTAGAGACCAGTG+TGG | 0.741443 | 6_4:+12013320 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAAATTTTCTAAGCTATTTA+AGG | + | chr6_4:12012974-12012993 | None:intergenic | 15.0% |
| !!! | AAATAGCTTAGAAAATTTTA+AGG | - | chr6_4:12012975-12012994 | Msa0977330:CDS | 15.0% |
| !!! | AATAGCTTAGAAAATTTTAA+GGG | - | chr6_4:12012976-12012995 | Msa0977330:CDS | 15.0% |
| !!! | ATTTTTCATCAAATTCATCT+AGG | + | chr6_4:12012771-12012790 | None:intergenic | 20.0% |
| !! | TAGATGAATTTGATGAAAAA+TGG | - | chr6_4:12012770-12012789 | Msa0977330:CDS | 20.0% |
| !!! | ACTGATTTAACAATGTATTA+TGG | - | chr6_4:12012916-12012935 | Msa0977330:CDS | 20.0% |
| !!! | AAATTTCAAACCATTTCTTT+TGG | + | chr6_4:12013175-12013194 | None:intergenic | 20.0% |
| !!! | AAAGAAATGGTTTGAAATTT+AGG | - | chr6_4:12013175-12013194 | Msa0977330:CDS | 20.0% |
| ! | TATGAGAAAGGAAAAATTGT+TGG | - | chr6_4:12012865-12012884 | Msa0977330:CDS | 25.0% |
| ! | AATGTATTATGGCTATAGAA+AGG | - | chr6_4:12012927-12012946 | Msa0977330:CDS | 25.0% |
| ! | GATCATATATAACTCCATAT+TGG | + | chr6_4:12013118-12013137 | None:intergenic | 25.0% |
| !! | AAATTTTGTATTCCTCCAAT+TGG | + | chr6_4:12013140-12013159 | None:intergenic | 25.0% |
| ! | ATACAAAATTTCCCAAAAGA+AGG | - | chr6_4:12013149-12013168 | Msa0977330:CDS | 25.0% |
| ! | TGTATAATGATTGTGTTCAT+TGG | - | chr6_4:12013283-12013302 | Msa0977330:CDS | 25.0% |
| !! | TGTTGAGTTTTGACAAGAAA+GGG | + | chr6_4:12012703-12012722 | None:intergenic | 30.0% |
| !! | TTGTTGAGTTTTGACAAGAA+AGG | + | chr6_4:12012704-12012723 | None:intergenic | 30.0% |
| ACTCAACAAGAAAATTCAGA+TGG | - | chr6_4:12012715-12012734 | Msa0977330:CDS | 30.0% | |
| TTTGACTATGTCATACTCAA+TGG | - | chr6_4:12012811-12012830 | Msa0977330:CDS | 30.0% | |
| ATACCATTCTCAAAATGAGA+TGG | + | chr6_4:12013027-12013046 | None:intergenic | 30.0% | |
| !! | CTCATTTTGAGAATGGTATA+TGG | - | chr6_4:12013028-12013047 | Msa0977330:CDS | 30.0% |
| TAAGCCATTTAAGAGTAATG+AGG | - | chr6_4:12013077-12013096 | Msa0977330:CDS | 30.0% | |
| GGAGTTATATATGATCCAAT+TGG | - | chr6_4:12013122-12013141 | Msa0977330:CDS | 30.0% | |
| GTTATATATGATCCAATTGG+AGG | - | chr6_4:12013125-12013144 | Msa0977330:CDS | 30.0% | |
| !! | ATTTCTTTTGGCCTTCTTTT+GGG | + | chr6_4:12013163-12013182 | None:intergenic | 30.0% |
| ! | TACAATGTCACATTTTCTTG+TGG | + | chr6_4:12013267-12013286 | None:intergenic | 30.0% |
| AAATCACTCCATGTATCTAT+AGG | + | chr6_4:12013321-12013340 | None:intergenic | 30.0% | |
| CCTTTCTCATAGAATACCAT+TGG | + | chr6_4:12012856-12012875 | None:intergenic | 35.0% | |
| CCAATGGTATTCTATGAGAA+AGG | - | chr6_4:12012853-12012872 | Msa0977330:CDS | 35.0% | |
| ! | ATGGCTATAGAAAGGCTTTT+AGG | - | chr6_4:12012935-12012954 | Msa0977330:CDS | 35.0% |
| ! | TTAAGGGTGTGACATTTCTT+AGG | - | chr6_4:12012992-12013011 | Msa0977330:CDS | 35.0% |
| GAGAATGGTATATGGAATCA+AGG | - | chr6_4:12013036-12013055 | Msa0977330:CDS | 35.0% | |
| AATGGTATATGGAATCAAGG+TGG | - | chr6_4:12013039-12013058 | Msa0977330:CDS | 35.0% | |
| ATGGTATATGGAATCAAGGT+GGG | - | chr6_4:12013040-12013059 | Msa0977330:CDS | 35.0% | |
| CTTGCCTCATTACTCTTAAA+TGG | + | chr6_4:12013084-12013103 | None:intergenic | 35.0% | |
| CATTTAAGAGTAATGAGGCA+AGG | - | chr6_4:12013082-12013101 | Msa0977330:CDS | 35.0% | |
| !! | CATTTCTTTTGGCCTTCTTT+TGG | + | chr6_4:12013164-12013183 | None:intergenic | 35.0% |
| CAAAAGAAGGCCAAAAGAAA+TGG | - | chr6_4:12013162-12013181 | Msa0977330:CDS | 35.0% | |
| CTTGCTAGAAATGTTGAAGA+TGG | - | chr6_4:12013341-12013360 | Msa0977330:CDS | 35.0% | |
| TAGAAATGTTGAAGATGGAG+AGG | - | chr6_4:12013346-12013365 | Msa0977330:CDS | 35.0% | |
| AGAAATGTTGAAGATGGAGA+GGG | - | chr6_4:12013347-12013366 | Msa0977330:CDS | 35.0% | |
| AAGATTGTAGAGACCAGTGT+GGG | + | chr6_4:12012746-12012765 | None:intergenic | 40.0% | |
| AAAGATTGTAGAGACCAGTG+TGG | + | chr6_4:12012747-12012766 | None:intergenic | 40.0% | |
| GACTATGTCATACTCAATGG+AGG | - | chr6_4:12012814-12012833 | Msa0977330:CDS | 40.0% | |
| TCATACTCAATGGAGGACAT+TGG | - | chr6_4:12012821-12012840 | Msa0977330:CDS | 40.0% | |
| !! | ACATTGGTTCTACAAGCCAA+TGG | - | chr6_4:12012837-12012856 | Msa0977330:CDS | 40.0% |
| !! | GCACCATCTCATTTTGAGAA+TGG | - | chr6_4:12013021-12013040 | Msa0977330:CDS | 40.0% |
| ATCAAGGTGGGAATTGTTTG+AGG | - | chr6_4:12013052-12013071 | Msa0977330:CDS | 40.0% | |
| AGTAATGAGGCAAGGTTAGA+AGG | - | chr6_4:12013090-12013109 | Msa0977330:CDS | 40.0% | |
| GTAATGAGGCAAGGTTAGAA+GGG | - | chr6_4:12013091-12013110 | Msa0977330:CDS | 40.0% | |
| AAGGTTAGAAGGGACCAATA+TGG | - | chr6_4:12013101-12013120 | Msa0977330:CDS | 40.0% | |
| GCAATGTTATTGAGACCAGA+TGG | - | chr6_4:12013216-12013235 | Msa0977330:CDS | 40.0% | |
| TATCTACTAGGATGACCATC+TGG | + | chr6_4:12013234-12013253 | None:intergenic | 40.0% | |
| GATGGTCATCCTAGTAGATA+CGG | - | chr6_4:12013234-12013253 | Msa0977330:CDS | 40.0% | |
| ! | TTGTGTTCATTGGTGTTTGC+CGG | - | chr6_4:12013293-12013312 | Msa0977330:CDS | 40.0% |
| GGCAAATGACCGTATCTACT+AGG | + | chr6_4:12013246-12013265 | None:intergenic | 45.0% | |
| ! | TGTGTTCATTGGTGTTTGCC+GGG | - | chr6_4:12013294-12013313 | Msa0977330:CDS | 45.0% |
| TATTTGACGCCTCTCTCTCT+TGG | + | chr6_4:12013379-12013398 | None:intergenic | 45.0% | |
| TTGTAGAGACCAGTGTGGGT+TGG | + | chr6_4:12012742-12012761 | None:intergenic | 50.0% | |
| ! | GTGTTCATTGGTGTTTGCCG+GGG | - | chr6_4:12013295-12013314 | Msa0977330:CDS | 50.0% |
| CTCCATGTATCTATAGGCCC+CGG | + | chr6_4:12013315-12013334 | None:intergenic | 50.0% | |
| TCAGATGGACCAACCCACAC+TGG | - | chr6_4:12012730-12012749 | Msa0977330:CDS | 55.0% | |
| TGCCGGGGCCTATAGATACA+TGG | - | chr6_4:12013310-12013329 | Msa0977330:CDS | 55.0% | |
| GGGCTAAGTCCAAGAGAGAG+AGG | - | chr6_4:12013367-12013386 | Msa0977330:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_4 | gene | 12012682 | 12013404 | 12012682 | ID=Msa0977330;Name=Msa0977330 |
| chr6_4 | mRNA | 12012682 | 12013404 | 12012682 | ID=Msa0977330-mRNA-1;Parent=Msa0977330;Name=Msa0977330-mRNA-1;_AED=0.40;_eAED=0.40;_QI=0|-1|0|1|-1|1|1|0|240 |
| chr6_4 | exon | 12012682 | 12013404 | 12012682 | ID=Msa0977330-mRNA-1:exon:4261;Parent=Msa0977330-mRNA-1 |
| chr6_4 | CDS | 12012682 | 12013404 | 12012682 | ID=Msa0977330-mRNA-1:cds;Parent=Msa0977330-mRNA-1 |
| Gene Sequence |
| Protein sequence |
