Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0875910 | XP_013451269.1 | 96.552 | 232 | 8 | 0 | 1 | 232 | 1 | 232 | 1.18e-159 | 451 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0875910 | sp|Q9SWS1|ACFR2_ARATH | 70.089 | 224 | 67 | 0 | 1 | 224 | 1 | 224 | 9.73e-112 | 322 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0220990 | Msa0875910 | 0.816876 | 4.411730e-52 | -8.615850e-47 |
| Msa0875910 | Msa1363280 | -0.803921 | 2.767780e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0875910 | MtrunA17_Chr6g0456901 | 96.552 | 232 | 8 | 0 | 1 | 232 | 1 | 232 | 1.09e-163 | 451 |
| Msa0875910 | MtrunA17_Chr1g0203371 | 47.982 | 223 | 113 | 2 | 5 | 227 | 6 | 225 | 1.21e-64 | 200 |
| Msa0875910 | MtrunA17_Chr5g0422371 | 45.755 | 212 | 110 | 3 | 16 | 223 | 18 | 228 | 3.91e-55 | 176 |
| Msa0875910 | MtrunA17_Chr1g0161921 | 38.191 | 199 | 118 | 1 | 22 | 220 | 23 | 216 | 1.23e-46 | 154 |
| Msa0875910 | MtrunA17_Chr1g0161941 | 35.233 | 193 | 121 | 1 | 25 | 217 | 20 | 208 | 5.28e-39 | 134 |
| Msa0875910 | MtrunA17_Chr8g0375991 | 35.385 | 195 | 120 | 3 | 19 | 213 | 14 | 202 | 1.29e-37 | 130 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0875910 | AT5G38630.1 | 70.089 | 224 | 67 | 0 | 1 | 224 | 1 | 224 | 9.89e-113 | 322 |
| Msa0875910 | AT4G25570.1 | 41.500 | 200 | 116 | 1 | 16 | 215 | 15 | 213 | 3.21e-54 | 174 |
| Msa0875910 | AT4G25570.2 | 41.709 | 199 | 115 | 1 | 17 | 215 | 57 | 254 | 1.15e-53 | 174 |
| Msa0875910 | AT1G26100.1 | 41.441 | 222 | 118 | 5 | 4 | 224 | 6 | 216 | 7.64e-47 | 155 |
| Msa0875910 | AT1G14730.1 | 34.951 | 206 | 127 | 2 | 19 | 223 | 25 | 224 | 1.23e-36 | 129 |
Find 58 sgRNAs with CRISPR-Local
Find 201 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTGCTGGATTTGCAACATTT+TGG | 0.259463 | 6_1:-13035237 | Msa0875910:CDS |
| TGTTTGTTTCTTGCATGTTT+GGG | 0.294537 | 6_1:-13034781 | Msa0875910:three_prime_UTR |
| ATGTTTGTTTCTTGCATGTT+TGG | 0.297808 | 6_1:-13034782 | Msa0875910:three_prime_UTR |
| ATTTCTACAGCCTGCATTCA+TGG | 0.301912 | 6_1:-13035872 | Msa0875910:CDS |
| ATATTCCAATGAAGCACTTT+TGG | 0.310108 | 6_1:-13035065 | Msa0875910:CDS |
| GAAGGGTGATTGAGGTATAA+AGG | 0.320455 | 6_1:+13038087 | None:intergenic |
| ATGCCATGGCATGTGTTCTT+TGG | 0.349931 | 6_1:-13035178 | Msa0875910:CDS |
| GTTGACCAAAAGTGCTTCAT+TGG | 0.353751 | 6_1:+13035060 | None:intergenic |
| TTAGGTGGCTTTGTTATTCT+CGG | 0.365202 | 6_1:-13035013 | Msa0875910:CDS |
| CTTGCGTACAAGACGGTAAC+CGG | 0.371874 | 6_1:-13036008 | Msa0875910:CDS |
| TTCGCAACAGTGAGAGGTAT+TGG | 0.383861 | 6_1:-13037971 | Msa0875910:CDS |
| AATATTTGTCAGTTGGCTGC+TGG | 0.399779 | 6_1:-13035253 | Msa0875910:intron |
| TACAGCCTGCATTCATGGTT+AGG | 0.404505 | 6_1:-13035867 | Msa0875910:CDS |
| CTCTCACTGTTGCGAAGATC+GGG | 0.412864 | 6_1:+13037978 | None:intergenic |
| AATAAAGCTGATGATATAAG+AGG | 0.418425 | 6_1:-13034971 | Msa0875910:CDS |
| CTACTATTTCTTGAGCCTCC+TGG | 0.421659 | 6_1:+13035211 | None:intergenic |
| TTTGAGCTTAATTGGTCTCT+GGG | 0.428516 | 6_1:-13035931 | Msa0875910:CDS |
| CATCCGGTGCTGATGGTGAT+TGG | 0.435104 | 6_1:-13036806 | Msa0875910:CDS |
| AAGATACCTGGATGAAGAAT+AGG | 0.442290 | 6_1:+13035829 | None:intergenic |
| ATATGACGTTGCCGGTTTGA+AGG | 0.453380 | 6_1:+13035092 | None:intergenic |
| ATTGGCCTTGTTCTGATCAA+TGG | 0.456315 | 6_1:-13036788 | Msa0875910:CDS |
| CCTCTCACTGTTGCGAAGAT+CGG | 0.456843 | 6_1:+13037977 | None:intergenic |
| ATATCGCGATATGACGTTGC+CGG | 0.458503 | 6_1:+13035084 | None:intergenic |
| AAGGGTGATTGAGGTATAAA+GGG | 0.469110 | 6_1:+13038088 | None:intergenic |
| GTATTCCATGTAGGTTCATC+CGG | 0.479369 | 6_1:-13036822 | Msa0875910:intron |
| TATAAAGGGAAAAGAAAACT+TGG | 0.485752 | 6_1:+13038102 | None:intergenic |
| TAATTGGTCTCTGGGCTGCT+TGG | 0.489448 | 6_1:-13035923 | Msa0875910:CDS |
| TCGCTACTCTTCTGTTAACA+TGG | 0.495998 | 6_1:-13037940 | Msa0875910:CDS |
| GCTATAGCCACAACTGCTAC+TGG | 0.500884 | 6_1:-13035136 | Msa0875910:CDS |
| CCTGGATGAAGAATAGGAAA+AGG | 0.513914 | 6_1:+13035835 | None:intergenic |
| AAGGCTACATTCCTTCAAAC+CGG | 0.515114 | 6_1:-13035103 | Msa0875910:CDS |
| ACATGGGTTGTTCATTTCAG+AGG | 0.537822 | 6_1:-13037923 | Msa0875910:CDS |
| TAAAAGACCAGTAGCAGTTG+TGG | 0.540299 | 6_1:+13035129 | None:intergenic |
| ATCGGGAATTTGACTACTGG+TGG | 0.544162 | 6_1:+13037995 | None:intergenic |
| CGCTACTCTTCTGTTAACAT+GGG | 0.547073 | 6_1:-13037939 | Msa0875910:CDS |
| CAAGGCCTAACCATGAATGC+AGG | 0.550817 | 6_1:+13035862 | None:intergenic |
| TTGATGTTGAAGGGTGATTG+AGG | 0.551413 | 6_1:+13038079 | None:intergenic |
| CGGTTGTAAGATGTATTCGA+TGG | 0.562736 | 6_1:-13034902 | Msa0875910:three_prime_UTR |
| TGGTATCTATATCTATGCAT+TGG | 0.564702 | 6_1:-13035158 | Msa0875910:CDS |
| TCATCAGCTTTATTATAAGT+CGG | 0.565682 | 6_1:+13034980 | None:intergenic |
| GATATAAGAGGAAATGAGTG+AGG | 0.565852 | 6_1:-13034959 | Msa0875910:exon |
| AAGATCGGGAATTTGACTAC+TGG | 0.568641 | 6_1:+13037992 | None:intergenic |
| AGGCCAATCACCATCAGCAC+CGG | 0.581269 | 6_1:+13036803 | None:intergenic |
| GTTTGTTTCTTGCATGTTTG+GGG | 0.583270 | 6_1:-13034780 | Msa0875910:three_prime_UTR |
| CCGATCTTCGCAACAGTGAG+AGG | 0.584109 | 6_1:-13037977 | Msa0875910:CDS |
| GTAGGTTCATCCGGTGCTGA+TGG | 0.584675 | 6_1:-13036813 | Msa0875910:intron |
| TGGGTTGTTCATTTCAGAGG+AGG | 0.588663 | 6_1:-13037920 | Msa0875910:CDS |
| GATGAAGAATAGGAAAAGGC+AGG | 0.590163 | 6_1:+13035839 | None:intergenic |
| AGAATAGGAAAAGGCAGGCA+AGG | 0.599473 | 6_1:+13035844 | None:intergenic |
| TGGAAATTTCACAATGACAA+GGG | 0.615433 | 6_1:-13035903 | Msa0875910:CDS |
| GTAGAGTTGCGCTAATGCCA+TGG | 0.616539 | 6_1:-13035192 | Msa0875910:CDS |
| CTTCACCATTGATCAGAACA+AGG | 0.635114 | 6_1:+13036783 | None:intergenic |
| TTGGAAATTTCACAATGACA+AGG | 0.644036 | 6_1:-13035904 | Msa0875910:CDS |
| ATACCAAAGAACACATGCCA+TGG | 0.644899 | 6_1:+13035175 | None:intergenic |
| CTTGTTCTGATCAATGGTGA+AGG | 0.651060 | 6_1:-13036782 | Msa0875910:intron |
| ATATAAGAGGAAATGAGTGA+GGG | 0.651249 | 6_1:-13034958 | Msa0875910:exon |
| AAATATGAGAACATGAAGAA+CGG | 0.652032 | 6_1:-13034922 | Msa0875910:three_prime_UTR |
| AGGGATGCTTGCGTACAAGA+CGG | 0.677422 | 6_1:-13036015 | Msa0875910:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAATTAATAACTATAAAACA+CGG | + | chr6_1:13035419-13035438 | None:intergenic | 10.0% |
| !! | TTTATAGTTATTAATTAAAG+TGG | - | chr6_1:13035422-13035441 | Msa0875910:intron | 10.0% |
| !!! | TTTTTTGTTTAAATTTAGTT+TGG | - | chr6_1:13035631-13035650 | Msa0875910:intron | 10.0% |
| !!! | AAAAATAAAAAGTACAAATT+TGG | + | chr6_1:13037468-13037487 | None:intergenic | 10.0% |
| !!! | ATTTGTACTTTTTATTTTTA+AGG | - | chr6_1:13037469-13037488 | Msa0875910:intron | 10.0% |
| !!! | TTGTTATTATTCATTGTTTT+TGG | - | chr6_1:13035062-13035081 | Msa0875910:CDS | 15.0% |
| !!! | TGTTATTATTCATTGTTTTT+GGG | - | chr6_1:13035063-13035082 | Msa0875910:CDS | 15.0% |
| !!! | CAATTTTCAGTTTTTTTTTT+TGG | - | chr6_1:13035108-13035127 | Msa0875910:CDS | 15.0% |
| !! | AATTAATAACTATAAAACAC+GGG | + | chr6_1:13035418-13035437 | None:intergenic | 15.0% |
| !!! | TTAGTTTTTGTATATTTTGT+TGG | - | chr6_1:13035951-13035970 | Msa0875910:CDS | 15.0% |
| !!! | TAGTTTTTGTATATTTTGTT+GGG | - | chr6_1:13035952-13035971 | Msa0875910:CDS | 15.0% |
| !!! | AATCATATTTTTTCACATAA+AGG | + | chr6_1:13036001-13036020 | None:intergenic | 15.0% |
| !! | TAAAAAAAAAAACCAAATGA+CGG | + | chr6_1:13036816-13036835 | None:intergenic | 15.0% |
| !!! | TAGTCATTTTTAAGATTTAT+TGG | - | chr6_1:13037184-13037203 | Msa0875910:intron | 15.0% |
| !!! | AGTCATTTTTAAGATTTATT+GGG | - | chr6_1:13037185-13037204 | Msa0875910:intron | 15.0% |
| !!! | TTTTAACTCTTTTTTTCATC+TGG | - | chr6_1:13035018-13035037 | Msa0875910:CDS | 20.0% |
| !!! | TTTAACTCTTTTTTTCATCT+GGG | - | chr6_1:13035019-13035038 | Msa0875910:CDS | 20.0% |
| !!! | TGTTGATTTTATTTCAGTTT+TGG | - | chr6_1:13035181-13035200 | Msa0875910:CDS | 20.0% |
| !!! | GAGTGTAAATTTTGATTTTT+AGG | - | chr6_1:13035549-13035568 | Msa0875910:intron | 20.0% |
| !! | TAAAAAAAAAAATCTCTACG+AGG | + | chr6_1:13035923-13035942 | None:intergenic | 20.0% |
| !!! | CGTAGAGATTTTTTTTTTTA+TGG | - | chr6_1:13035923-13035942 | Msa0875910:CDS | 20.0% |
| !!! | TTTTTATGGTGATATATGAA+GGG | - | chr6_1:13036158-13036177 | Msa0875910:intron | 20.0% |
| !! | AATAACAGTTATCAACAAAT+TGG | - | chr6_1:13036194-13036213 | Msa0875910:intron | 20.0% |
| !!! | TTTTTTTTTTTACAATGTGC+AGG | - | chr6_1:13036824-13036843 | Msa0875910:intron | 20.0% |
| !!! | TTTTTTTTTTACAATGTGCA+GGG | - | chr6_1:13036825-13036844 | Msa0875910:intron | 20.0% |
| !!! | TTTATTTTTAAGGAACAAGT+AGG | - | chr6_1:13037479-13037498 | Msa0875910:intron | 20.0% |
| ! | TATAAAGGGAAAAGAAAACT+TGG | + | chr6_1:13034760-13034779 | None:intergenic | 25.0% |
| !!! | AATGAGATTTTGATGTTGAA+GGG | + | chr6_1:13034792-13034811 | None:intergenic | 25.0% |
| !!! | TATTCATTGTTTTTGGGTAA+TGG | - | chr6_1:13035069-13035088 | Msa0875910:CDS | 25.0% |
| !!! | ATTCATTGTTTTTGGGTAAT+GGG | - | chr6_1:13035070-13035089 | Msa0875910:CDS | 25.0% |
| ! | TTGAATATGTGAGAATTTGA+AGG | - | chr6_1:13035133-13035152 | Msa0875910:CDS | 25.0% |
| ! | TTTAGGCTTAATTACTTTGT+TGG | - | chr6_1:13035566-13035585 | Msa0875910:intron | 25.0% |
| ! | GAAACTAGAAATTATGGTAA+AGG | + | chr6_1:13035593-13035612 | None:intergenic | 25.0% |
| ! | CATATCGAAACTAGAAATTA+TGG | + | chr6_1:13035599-13035618 | None:intergenic | 25.0% |
| !!! | CATAATTTCTAGTTTCGATA+TGG | - | chr6_1:13035597-13035616 | Msa0875910:intron | 25.0% |
| !!! | GCTTTAAAGTGTTAATTTTG+AGG | - | chr6_1:13035764-13035783 | Msa0875910:intron | 25.0% |
| !!! | TTTTGTTTAGCAATAAGAAG+TGG | - | chr6_1:13035796-13035815 | Msa0875910:intron | 25.0% |
| !! | CTTTTTATGGTGATATATGA+AGG | - | chr6_1:13036157-13036176 | Msa0875910:intron | 25.0% |
| !! | TAGAAAGCAGAGATAATTTT+AGG | - | chr6_1:13036233-13036252 | Msa0875910:intron | 25.0% |
| !! | AGAAAGCAGAGATAATTTTA+GGG | - | chr6_1:13036234-13036253 | Msa0875910:intron | 25.0% |
| ! | TTGCATTACATACAGTTAAA+GGG | + | chr6_1:13036264-13036283 | None:intergenic | 25.0% |
| ! | TTCAGATTTCTCATAGTATT+TGG | + | chr6_1:13036287-13036306 | None:intergenic | 25.0% |
| ! | AATACTATGAGAAATCTGAA+TGG | - | chr6_1:13036287-13036306 | Msa0875910:intron | 25.0% |
| ! | ATACTATGAGAAATCTGAAT+GGG | - | chr6_1:13036288-13036307 | Msa0875910:intron | 25.0% |
| ! | AATTTATGGGAATTGAGAAT+AGG | + | chr6_1:13036359-13036378 | None:intergenic | 25.0% |
| ! | GAAATACAGCGAAAATTTAT+GGG | + | chr6_1:13036372-13036391 | None:intergenic | 25.0% |
| ! | TGAAATACAGCGAAAATTTA+TGG | + | chr6_1:13036373-13036392 | None:intergenic | 25.0% |
| !! | AAATTTTCGCTGTATTTCAA+CGG | - | chr6_1:13036374-13036393 | Msa0875910:intron | 25.0% |
| ! | ACTTTCAACTCTTGAATTTA+AGG | + | chr6_1:13036447-13036466 | None:intergenic | 25.0% |
| !! | AAAACTAAAGAAAGTGTATG+TGG | - | chr6_1:13036574-13036593 | Msa0875910:intron | 25.0% |
| ! | ATAAGAATGAAAAAGATACC+TGG | + | chr6_1:13037045-13037064 | None:intergenic | 25.0% |
| !! | TTGACATTTTTCATTTCTCA+GGG | + | chr6_1:13037131-13037150 | None:intergenic | 25.0% |
| !! | ATTGACATTTTTCATTTCTC+AGG | + | chr6_1:13037132-13037151 | None:intergenic | 25.0% |
| !! | TCATCCAAATTTTCAATTGT+CGG | - | chr6_1:13037156-13037175 | Msa0875910:intron | 25.0% |
| !! | TTTTCCGACAATTGAAAATT+TGG | + | chr6_1:13037163-13037182 | None:intergenic | 25.0% |
| !!! | TCAACCAATGTTTTAAAAAC+CGG | - | chr6_1:13037235-13037254 | Msa0875910:intron | 25.0% |
| !!! | CAGTTTTTAAACATTGGTTT+CGG | - | chr6_1:13037419-13037438 | Msa0875910:intron | 25.0% |
| !!! | TCATCAGCTTTATTATAAGT+CGG | + | chr6_1:13037882-13037901 | None:intergenic | 25.0% |
| ! | AATAAAGCTGATGATATAAG+AGG | - | chr6_1:13037888-13037907 | Msa0875910:CDS | 25.0% |
| ! | AAATATGAGAACATGAAGAA+CGG | - | chr6_1:13037937-13037956 | Msa0875910:CDS | 25.0% |
| !! | GAATGAGATTTTGATGTTGA+AGG | + | chr6_1:13034793-13034812 | None:intergenic | 30.0% |
| !! | TCAATTTTCTCTCTCTAGAA+TGG | - | chr6_1:13034836-13034855 | Msa0875910:three_prime_UTR | 30.0% |
| ATTTGAAGGCTTAGGATTAT+AGG | - | chr6_1:13035147-13035166 | Msa0875910:CDS | 30.0% | |
| TTTGAAGGCTTAGGATTATA+GGG | - | chr6_1:13035148-13035167 | Msa0875910:CDS | 30.0% | |
| !! | TATTATTAGTGTCGACATGT+TGG | - | chr6_1:13035366-13035385 | Msa0875910:intron | 30.0% |
| GATTTGAATTTCATCTCTTG+AGG | - | chr6_1:13035482-13035501 | Msa0875910:intron | 30.0% | |
| TGCTAAACTTATCGTAGTTA+AGG | - | chr6_1:13035666-13035685 | Msa0875910:intron | 30.0% | |
| !! | AGCCTGTTTGAAACTTTTTA+TGG | - | chr6_1:13036144-13036163 | Msa0875910:intron | 30.0% |
| CACCATAAAAAGTTTCAAAC+AGG | + | chr6_1:13036149-13036168 | None:intergenic | 30.0% | |
| GTTGCATTACATACAGTTAA+AGG | + | chr6_1:13036265-13036284 | None:intergenic | 30.0% | |
| ACTCTTGAATTTAAGGAGAA+CGG | + | chr6_1:13036440-13036459 | None:intergenic | 30.0% | |
| ACAATGATGAGAGTCATAAA+TGG | + | chr6_1:13036545-13036564 | None:intergenic | 30.0% | |
| GAAAAAGATTGAAAACAACG+CGG | + | chr6_1:13036645-13036664 | None:intergenic | 30.0% | |
| CGGTACAAATATTTGAAAAG+AGG | + | chr6_1:13036667-13036686 | None:intergenic | 30.0% | |
| ! | ACAACGATTATCACTCTTTT+CGG | + | chr6_1:13036687-13036706 | None:intergenic | 30.0% |
| CTTTCCTAGATTGCATATAA+TGG | - | chr6_1:13036726-13036745 | Msa0875910:intron | 30.0% | |
| GAAACCATTATATGCAATCT+AGG | + | chr6_1:13036733-13036752 | None:intergenic | 30.0% | |
| CGATACTCACAAATCAATTA+AGG | + | chr6_1:13036770-13036789 | None:intergenic | 30.0% | |
| !!! | TTTTCTGAAGCTTTTAGTTC+CGG | + | chr6_1:13036873-13036892 | None:intergenic | 30.0% |
| TTGGAAATTTCACAATGACA+AGG | - | chr6_1:13036955-13036974 | Msa0875910:intron | 30.0% | |
| TGGAAATTTCACAATGACAA+GGG | - | chr6_1:13036956-13036975 | Msa0875910:intron | 30.0% | |
| ! | AATAGGTCTGTGTATTTTCT+TGG | + | chr6_1:13037104-13037123 | None:intergenic | 30.0% |
| !!! | CAATCCGGTTTTTAAAACAT+TGG | + | chr6_1:13037242-13037261 | None:intergenic | 30.0% |
| !!! | CAATGTTTTAAAAACCGGAT+TGG | - | chr6_1:13037240-13037259 | Msa0875910:intron | 30.0% |
| CGAAACCAATGTTTAAAAAC+TGG | + | chr6_1:13037421-13037440 | None:intergenic | 30.0% | |
| TCTCTGTAATATTTGTCAGT+TGG | - | chr6_1:13037599-13037618 | Msa0875910:intron | 30.0% | |
| TGGTATCTATATCTATGCAT+TGG | - | chr6_1:13037701-13037720 | Msa0875910:intron | 30.0% | |
| !! | ATATTCCAATGAAGCACTTT+TGG | - | chr6_1:13037794-13037813 | Msa0875910:intron | 30.0% |
| !!! | ATTTTGATTGTTGCTTTAGG+TGG | - | chr6_1:13037831-13037850 | Msa0875910:intron | 30.0% |
| ATATAAGAGGAAATGAGTGA+GGG | - | chr6_1:13037901-13037920 | Msa0875910:CDS | 30.0% | |
| ! | ATGTTTGTTTCTTGCATGTT+TGG | - | chr6_1:13038077-13038096 | Msa0875910:five_prime_UTR | 30.0% |
| ! | TGTTTGTTTCTTGCATGTTT+GGG | - | chr6_1:13038078-13038097 | Msa0875910:five_prime_UTR | 30.0% |
| ! | TGAGACAAGACTTGTATTTT+TGG | - | chr6_1:13038104-13038123 | Msa0875910:five_prime_UTR | 30.0% |
| AAGGGTGATTGAGGTATAAA+GGG | + | chr6_1:13034774-13034793 | None:intergenic | 35.0% | |
| ATGTGAGAATTTGAAGGCTT+AGG | - | chr6_1:13035139-13035158 | Msa0875910:CDS | 35.0% | |
| TCGAATGTAAACACATGTGT+TGG | + | chr6_1:13035327-13035346 | None:intergenic | 35.0% | |
| !! | CTTTAAAGCATGTGAGACTA+CGG | + | chr6_1:13035753-13035772 | None:intergenic | 35.0% |
| ! | TAAGAAGTGGTTTGCACATT+AGG | - | chr6_1:13035809-13035828 | Msa0875910:intron | 35.0% |
| TGAACACTTGTATTCCATGT+AGG | - | chr6_1:13036028-13036047 | Msa0875910:intron | 35.0% | |
| !! | AAGCAGAGATAATTTTAGGG+TGG | - | chr6_1:13036237-13036256 | Msa0875910:intron | 35.0% |
| ! | CAACTCTAAAGAACCATGAA+AGG | + | chr6_1:13036405-13036424 | None:intergenic | 35.0% |
| TTAGTACTAACTCCGTCATT+TGG | - | chr6_1:13036801-13036820 | Msa0875910:CDS | 35.0% | |
| ! | GCTCTCATTTTGAGCTTAAT+TGG | - | chr6_1:13036920-13036939 | Msa0875910:intron | 35.0% |
| !! | TTTTGAGCTTAATTGGTCTC+TGG | - | chr6_1:13036927-13036946 | Msa0875910:intron | 35.0% |
| ! | TTTGAGCTTAATTGGTCTCT+GGG | - | chr6_1:13036928-13036947 | Msa0875910:intron | 35.0% |
| AAGATACCTGGATGAAGAAT+AGG | + | chr6_1:13037033-13037052 | None:intergenic | 35.0% | |
| !! | TATTTTCTTGGCGACTAGTT+TGG | + | chr6_1:13037092-13037111 | None:intergenic | 35.0% |
| ! | TTAATTGGTTCAACCAACTG+TGG | - | chr6_1:13037295-13037314 | Msa0875910:intron | 35.0% |
| ! | CTGGTCCAGTTTTTAAACAT+TGG | - | chr6_1:13037413-13037432 | Msa0875910:intron | 35.0% |
| !! | ACAGAGAGCATTTAGATACA+TGG | + | chr6_1:13037586-13037605 | None:intergenic | 35.0% |
| !! | TTTGCAACATTTTGGTATCC+AGG | - | chr6_1:13037630-13037649 | Msa0875910:intron | 35.0% |
| !!! | TGCTACTGGTCTTTTAGAAA+AGG | - | chr6_1:13037737-13037756 | Msa0875910:intron | 35.0% |
| !!! | GGCATTTTGATTGTTGCTTT+AGG | - | chr6_1:13037828-13037847 | Msa0875910:intron | 35.0% |
| !! | TTAGGTGGCTTTGTTATTCT+CGG | - | chr6_1:13037846-13037865 | Msa0875910:intron | 35.0% |
| GATATAAGAGGAAATGAGTG+AGG | - | chr6_1:13037900-13037919 | Msa0875910:CDS | 35.0% | |
| ! | GTTTGTTTCTTGCATGTTTG+GGG | - | chr6_1:13038079-13038098 | Msa0875910:five_prime_UTR | 35.0% |
| GAAGGGTGATTGAGGTATAA+AGG | + | chr6_1:13034775-13034794 | None:intergenic | 40.0% | |
| TTGATGTTGAAGGGTGATTG+AGG | + | chr6_1:13034783-13034802 | None:intergenic | 40.0% | |
| AAGATCGGGAATTTGACTAC+TGG | + | chr6_1:13034870-13034889 | None:intergenic | 40.0% | |
| TCGCTACTCTTCTGTTAACA+TGG | - | chr6_1:13034919-13034938 | Msa0875910:three_prime_UTR | 40.0% | |
| CGCTACTCTTCTGTTAACAT+GGG | - | chr6_1:13034920-13034939 | Msa0875910:three_prime_UTR | 40.0% | |
| ! | ACATGGGTTGTTCATTTCAG+AGG | - | chr6_1:13034936-13034955 | Msa0875910:three_prime_UTR | 40.0% |
| AAAGTGGTGTTTGATCTCTG+AGG | - | chr6_1:13035438-13035457 | Msa0875910:intron | 40.0% | |
| AAGTGGTGTTTGATCTCTGA+GGG | - | chr6_1:13035439-13035458 | Msa0875910:intron | 40.0% | |
| TAAGGTCTTTGACCTTTGAG+AGG | - | chr6_1:13035684-13035703 | Msa0875910:intron | 40.0% | |
| GTATTCCATGTAGGTTCATC+CGG | - | chr6_1:13036037-13036056 | Msa0875910:intron | 40.0% | |
| !! | ATTGGCCTTGTTCTGATCAA+TGG | - | chr6_1:13036071-13036090 | Msa0875910:intron | 40.0% |
| CTTCACCATTGATCAGAACA+AGG | + | chr6_1:13036079-13036098 | None:intergenic | 40.0% | |
| CTTGTTCTGATCAATGGTGA+AGG | - | chr6_1:13036077-13036096 | Msa0875910:intron | 40.0% | |
| CTATGAGAAATCTGAATGGG+AGG | - | chr6_1:13036291-13036310 | Msa0875910:intron | 40.0% | |
| !! | GGTTCTTTAGAGTTGATGCT+TGG | - | chr6_1:13036410-13036429 | Msa0875910:intron | 40.0% |
| ATTTCTACAGCCTGCATTCA+TGG | - | chr6_1:13036987-13037006 | Msa0875910:intron | 40.0% | |
| GATGAAGAATAGGAAAAGGC+AGG | + | chr6_1:13037023-13037042 | None:intergenic | 40.0% | |
| CCTGGATGAAGAATAGGAAA+AGG | + | chr6_1:13037027-13037046 | None:intergenic | 40.0% | |
| ! | CCTTTTCCTATTCTTCATCC+AGG | - | chr6_1:13037024-13037043 | Msa0875910:intron | 40.0% |
| TCATTTCTCAGGGACGAAAT+AGG | + | chr6_1:13037121-13037140 | None:intergenic | 40.0% | |
| TGGTTGAAATAGTACACGTC+AGG | + | chr6_1:13037222-13037241 | None:intergenic | 40.0% | |
| CCAATTAAATCATGATCCCG+AGG | + | chr6_1:13037283-13037302 | None:intergenic | 40.0% | |
| CCTCGGGATCATGATTTAAT+TGG | - | chr6_1:13037280-13037299 | Msa0875910:intron | 40.0% | |
| TGGTTGAACTAGATTGAACC+GGG | + | chr6_1:13037337-13037356 | None:intergenic | 40.0% | |
| GTGGTTGAACTAGATTGAAC+CGG | + | chr6_1:13037338-13037357 | None:intergenic | 40.0% | |
| CAACCACACTACATGACAAT+CGG | - | chr6_1:13037351-13037370 | Msa0875910:intron | 40.0% | |
| ATTCCGATTGTCATGTAGTG+TGG | + | chr6_1:13037357-13037376 | None:intergenic | 40.0% | |
| AAAACTGGACCAGATCAACA+GGG | + | chr6_1:13037406-13037425 | None:intergenic | 40.0% | |
| AAAAACTGGACCAGATCAAC+AGG | + | chr6_1:13037407-13037426 | None:intergenic | 40.0% | |
| AATATTTGTCAGTTGGCTGC+TGG | - | chr6_1:13037606-13037625 | Msa0875910:intron | 40.0% | |
| ! | CTGCTGGATTTGCAACATTT+TGG | - | chr6_1:13037622-13037641 | Msa0875910:intron | 40.0% |
| ATACCAAAGAACACATGCCA+TGG | + | chr6_1:13037687-13037706 | None:intergenic | 40.0% | |
| TAAAAGACCAGTAGCAGTTG+TGG | + | chr6_1:13037733-13037752 | None:intergenic | 40.0% | |
| AAGGCTACATTCCTTCAAAC+CGG | - | chr6_1:13037756-13037775 | Msa0875910:intron | 40.0% | |
| !! | GTTGACCAAAAGTGCTTCAT+TGG | + | chr6_1:13037802-13037821 | None:intergenic | 40.0% |
| CGGTTGTAAGATGTATTCGA+TGG | - | chr6_1:13037957-13037976 | Msa0875910:CDS | 40.0% | |
| ATCGGGAATTTGACTACTGG+TGG | + | chr6_1:13034867-13034886 | None:intergenic | 45.0% | |
| ! | TTCGCAACAGTGAGAGGTAT+TGG | - | chr6_1:13034888-13034907 | Msa0875910:three_prime_UTR | 45.0% |
| TGGGTTGTTCATTTCAGAGG+AGG | - | chr6_1:13034939-13034958 | Msa0875910:three_prime_UTR | 45.0% | |
| AGTGGTGTTTGATCTCTGAG+GGG | - | chr6_1:13035440-13035459 | Msa0875910:intron | 45.0% | |
| CGCATGCTGTAGGATGTATT+TGG | - | chr6_1:13035522-13035541 | Msa0875910:intron | 45.0% | |
| AGTTCACACGAACACGAAGT+TGG | - | chr6_1:13035897-13035916 | Msa0875910:CDS | 45.0% | |
| TTCAACGGTGAAGCCTTTCA+TGG | - | chr6_1:13036389-13036408 | Msa0875910:intron | 45.0% | |
| TACAGCCTGCATTCATGGTT+AGG | - | chr6_1:13036992-13037011 | Msa0875910:intron | 45.0% | |
| AGAATAGGAAAAGGCAGGCA+AGG | + | chr6_1:13037018-13037037 | None:intergenic | 45.0% | |
| !! | TACTGGTTCGATCTCCAATC+CGG | + | chr6_1:13037257-13037276 | None:intergenic | 45.0% |
| AGATCGAACCAGTAAGACCT+CGG | - | chr6_1:13037263-13037282 | Msa0875910:intron | 45.0% | |
| ! | GAACTGGTCTGTTCATCTGT+TGG | + | chr6_1:13037384-13037403 | None:intergenic | 45.0% |
| TCGGCTGACATTTGCGATTT+AGG | - | chr6_1:13037438-13037457 | Msa0875910:intron | 45.0% | |
| !! | GCAACATTTTGGTATCCAGG+AGG | - | chr6_1:13037633-13037652 | Msa0875910:intron | 45.0% |
| ! | CTACTATTTCTTGAGCCTCC+TGG | + | chr6_1:13037651-13037670 | None:intergenic | 45.0% |
| ATGCCATGGCATGTGTTCTT+TGG | - | chr6_1:13037681-13037700 | Msa0875910:intron | 45.0% | |
| !! | ATATGACGTTGCCGGTTTGA+AGG | + | chr6_1:13037770-13037789 | None:intergenic | 45.0% |
| ATATCGCGATATGACGTTGC+CGG | + | chr6_1:13037778-13037797 | None:intergenic | 45.0% | |
| ! | GCACTTTTGGTCAACTGCTT+AGG | - | chr6_1:13037807-13037826 | Msa0875910:intron | 45.0% |
| CTCTCACTGTTGCGAAGATC+GGG | + | chr6_1:13034884-13034903 | None:intergenic | 50.0% | |
| CCTCTCACTGTTGCGAAGAT+CGG | + | chr6_1:13034885-13034904 | None:intergenic | 50.0% | |
| ACTAAGCTGACGCATGCTGT+AGG | - | chr6_1:13035512-13035531 | Msa0875910:intron | 50.0% | |
| ! | TACCTTGGAGCACCTCTCAA+AGG | + | chr6_1:13035699-13035718 | None:intergenic | 50.0% |
| CCTAAGCCATGGAGATACCT+TGG | + | chr6_1:13035714-13035733 | None:intergenic | 50.0% | |
| ! | CCAAGGTATCTCCATGGCTT+AGG | - | chr6_1:13035711-13035730 | Msa0875910:intron | 50.0% |
| TCTCCATGGCTTAGGCCTAT+TGG | - | chr6_1:13035719-13035738 | Msa0875910:intron | 50.0% | |
| CTCCATGGCTTAGGCCTATT+GGG | - | chr6_1:13035720-13035739 | Msa0875910:intron | 50.0% | |
| AGGGATGCTTGCGTACAAGA+CGG | - | chr6_1:13036844-13036863 | Msa0875910:intron | 50.0% | |
| CTTGCGTACAAGACGGTAAC+CGG | - | chr6_1:13036851-13036870 | Msa0875910:intron | 50.0% | |
| ! | TAATTGGTCTCTGGGCTGCT+TGG | - | chr6_1:13036936-13036955 | Msa0875910:intron | 50.0% |
| CAAGGCCTAACCATGAATGC+AGG | + | chr6_1:13037000-13037019 | None:intergenic | 50.0% | |
| GATCGAACCAGTAAGACCTC+GGG | - | chr6_1:13037264-13037283 | Msa0875910:intron | 50.0% | |
| TCATGATCCCGAGGTCTTAC+TGG | + | chr6_1:13037274-13037293 | None:intergenic | 50.0% | |
| ATCTGCGGTTGAACCACAGT+TGG | + | chr6_1:13037311-13037330 | None:intergenic | 50.0% | |
| GATTGAACCGGGTAGATCTG+CGG | + | chr6_1:13037326-13037345 | None:intergenic | 50.0% | |
| AGACCAGTTCCCTGTTGATC+TGG | - | chr6_1:13037394-13037413 | Msa0875910:intron | 50.0% | |
| GTAGAGTTGCGCTAATGCCA+TGG | - | chr6_1:13037667-13037686 | Msa0875910:intron | 50.0% | |
| GCTATAGCCACAACTGCTAC+TGG | - | chr6_1:13037723-13037742 | Msa0875910:intron | 50.0% | |
| CCGATCTTCGCAACAGTGAG+AGG | - | chr6_1:13034882-13034901 | Msa0875910:three_prime_UTR | 55.0% | |
| !! | GACCTTTGAGAGGTGCTCCA+AGG | - | chr6_1:13035694-13035713 | Msa0875910:intron | 55.0% |
| ! | GGTGCTCCAAGGTATCTCCA+TGG | - | chr6_1:13035705-13035724 | Msa0875910:intron | 55.0% |
| TGCCCAATAGGCCTAAGCCA+TGG | + | chr6_1:13035725-13035744 | None:intergenic | 55.0% | |
| ACTACGGCAACGTGCCCAAT+AGG | + | chr6_1:13035737-13035756 | None:intergenic | 55.0% | |
| ! | CAGCACCGGATGAACCTACA+TGG | + | chr6_1:13036045-13036064 | None:intergenic | 55.0% |
| ! | GTAGGTTCATCCGGTGCTGA+TGG | - | chr6_1:13036046-13036065 | Msa0875910:intron | 55.0% |
| !! | CATCCGGTGCTGATGGTGAT+TGG | - | chr6_1:13036053-13036072 | Msa0875910:intron | 55.0% |
| AGGCCAATCACCATCAGCAC+CGG | + | chr6_1:13036059-13036078 | None:intergenic | 55.0% | |
| GGTTCAACCGCAGATCTACC+CGG | - | chr6_1:13037316-13037335 | Msa0875910:intron | 55.0% | |
| GGACCAGATCAACAGGGAAC+TGG | + | chr6_1:13037400-13037419 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_1 | gene | 13034748 | 13038133 | 13034748 | ID=Msa0875910;Name=Msa0875910 |
| chr6_1 | mRNA | 13034748 | 13038133 | 13034748 | ID=Msa0875910-mRNA-1;Parent=Msa0875910;Name=Msa0875910-mRNA-1;_AED=0.02;_eAED=0.02;_QI=107|1|1|1|1|1|4|213|232 |
| chr6_1 | exon | 13034748 | 13035263 | 13034748 | ID=Msa0875910-mRNA-1:exon:3872;Parent=Msa0875910-mRNA-1 |
| chr6_1 | exon | 13035836 | 13036035 | 13035836 | ID=Msa0875910-mRNA-1:exon:3871;Parent=Msa0875910-mRNA-1 |
| chr6_1 | exon | 13036783 | 13036831 | 13036783 | ID=Msa0875910-mRNA-1:exon:3870;Parent=Msa0875910-mRNA-1 |
| chr6_1 | exon | 13037880 | 13038133 | 13037880 | ID=Msa0875910-mRNA-1:exon:3869;Parent=Msa0875910-mRNA-1 |
| chr6_1 | five_prime_UTR | 13038027 | 13038133 | 13038027 | ID=Msa0875910-mRNA-1:five_prime_utr;Parent=Msa0875910-mRNA-1 |
| chr6_1 | CDS | 13037880 | 13038026 | 13037880 | ID=Msa0875910-mRNA-1:cds;Parent=Msa0875910-mRNA-1 |
| chr6_1 | CDS | 13036783 | 13036831 | 13036783 | ID=Msa0875910-mRNA-1:cds;Parent=Msa0875910-mRNA-1 |
| chr6_1 | CDS | 13035836 | 13036035 | 13035836 | ID=Msa0875910-mRNA-1:cds;Parent=Msa0875910-mRNA-1 |
| chr6_1 | CDS | 13034961 | 13035263 | 13034961 | ID=Msa0875910-mRNA-1:cds;Parent=Msa0875910-mRNA-1 |
| chr6_1 | three_prime_UTR | 13034748 | 13034960 | 13034748 | ID=Msa0875910-mRNA-1:three_prime_utr;Parent=Msa0875910-mRNA-1 |
| Gene Sequence |
| Protein sequence |
