AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1363280


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1363280 MtrunA17_Chr8g0387321 97.403 231 0 2 3 233 396 620 9.76e-162 461
Msa1363280 MtrunA17_Chr4g0025521 71.429 63 14 1 3 65 429 487 5.02e-22 94.4
Msa1363280 MtrunA17_Chr7g0267481 60.000 70 24 1 3 72 385 450 3.84e-21 91.7
Msa1363280 MtrunA17_Chr8g0373801 75.472 53 9 1 3 55 603 651 8.40e-20 87.8
Msa1363280 MtrunA17_Chr5g0403251 34.518 197 104 7 3 180 551 741 1.20e-19 87.4
Msa1363280 MtrunA17_Chr7g0240371 32.468 231 105 9 3 231 332 513 4.62e-19 85.5
Msa1363280 MtrunA17_Chr4g0028701 70.000 50 11 1 3 52 497 542 1.41e-16 78.2
Msa1363280 MtrunA17_Chr4g0008591 62.500 56 17 1 3 58 387 438 1.86e-16 77.8
Msa1363280 MtrunA17_Chr1g0155681 72.917 48 9 1 3 50 383 426 2.22e-16 77.8
Msa1363280 MtrunA17_Chr2g0327021 68.000 50 12 1 3 52 466 511 3.05e-16 77.4
Msa1363280 MtrunA17_Chr3g0141941 60.656 61 20 1 3 63 372 428 4.13e-16 77.0
Msa1363280 MtrunA17_Chr1g0151681 48.649 74 30 2 3 76 451 516 9.05e-16 75.9
Msa1363280 MtrunA17_Chr3g0141931 70.833 48 10 1 3 50 375 418 1.96e-15 74.7
Msa1363280 MtrunA17_Chr1g0177751 64.286 70 20 2 3 72 373 437 2.94e-14 71.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1363280 AT5G41410.1 47.257 237 76 13 3 233 418 611 7.64e-47 164
Msa1363280 AT2G23760.4 80.851 47 5 1 1 47 501 543 4.78e-19 85.9
Msa1363280 AT4G36870.2 84.444 45 3 1 3 47 525 565 1.30e-18 84.7
Msa1363280 AT4G36870.1 84.444 45 3 1 3 47 525 565 1.30e-18 84.7
Msa1363280 AT2G23760.2 84.444 45 3 1 3 47 451 491 1.76e-18 84.3
Msa1363280 AT2G23760.1 84.444 45 3 1 3 47 451 491 1.76e-18 84.3
Msa1363280 AT2G23760.3 84.444 45 3 1 3 47 451 491 1.76e-18 84.3
Msa1363280 AT4G34610.2 52.809 89 31 3 3 85 341 424 1.66e-17 81.3
Msa1363280 AT4G34610.4 52.809 89 31 3 3 85 341 424 1.66e-17 81.3
Msa1363280 AT4G34610.3 52.809 89 31 3 3 85 341 424 1.66e-17 81.3
Msa1363280 AT4G34610.1 52.809 89 31 3 3 85 341 424 1.66e-17 81.3
Msa1363280 AT2G16400.1 79.167 48 6 1 3 50 312 355 2.53e-17 80.9
Msa1363280 AT2G27220.1 38.281 128 64 4 3 121 255 376 2.19e-16 77.8
Msa1363280 AT2G27220.3 38.281 128 64 4 3 121 255 376 2.19e-16 77.8
Msa1363280 AT2G27220.2 37.984 129 63 4 3 121 273 394 2.55e-16 77.8
Msa1363280 AT4G32980.1 58.065 62 22 1 3 64 399 456 2.88e-16 77.8
Msa1363280 AT4G32980.2 58.065 62 22 1 3 64 399 456 2.88e-16 77.8
Msa1363280 AT1G75430.1 68.750 48 11 1 3 50 229 272 3.09e-15 73.6
Msa1363280 AT2G27990.1 70.000 50 11 1 3 52 451 496 5.30e-15 73.9
Msa1363280 AT5G02030.1 68.750 48 11 1 3 50 375 418 6.67e-15 73.9
Msa1363280 AT1G19700.1 66.667 48 12 1 3 50 378 421 1.10e-14 73.2
Msa1363280 AT1G19700.3 66.667 48 12 1 3 50 378 421 1.10e-14 73.2
Msa1363280 AT1G19700.5 66.667 48 12 1 3 50 378 421 1.10e-14 73.2
Msa1363280 AT1G19700.4 66.667 48 12 1 3 50 378 421 1.10e-14 73.2
Msa1363280 AT1G19700.2 66.667 48 12 1 3 50 378 421 1.10e-14 73.2
Msa1363280 AT2G35940.3 36.000 200 89 5 3 174 412 600 3.54e-14 71.6
Msa1363280 AT2G35940.1 36.000 200 89 5 3 174 412 600 3.54e-14 71.6
Msa1363280 AT2G35940.2 36.000 200 89 5 3 174 412 600 3.54e-14 71.6
Msa1363280 AT1G75410.1 64.583 48 13 1 3 50 373 416 4.28e-14 71.2
Msa1363280 AT1G75410.2 64.583 48 13 1 3 50 373 416 4.28e-14 71.2

Find 59 sgRNAs with CRISPR-Local

Find 180 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CGACGTTGATAAGCATATTT+TGG 0.179512 tig0018036:+86907 Msa1363280:CDS
ACCGGTTCAGTACTCTCTTT+TGG 0.253768 tig0018036:+87748 Msa1363280:CDS
CAAACGCATCCGCGGCTAAT+TGG 0.275675 tig0018036:-87508 None:intergenic
AATGGTGGAAGAAATGTATT+TGG 0.286857 tig0018036:+87262 Msa1363280:CDS
ACTGAACCGGTTCTTCAATT+TGG 0.298745 tig0018036:-87736 None:intergenic
TTGAAAAGCAGGTATCAAAT+TGG 0.320064 tig0018036:+87207 Msa1363280:intron
CATGAGGTTGAGTTTGAGAT+TGG 0.355537 tig0018036:-87376 None:intergenic
CAATTAGCCGCGGATGCGTT+TGG 0.383986 tig0018036:+87509 Msa1363280:CDS
TTAATGCAAGAGTGAGACTA+TGG 0.389784 tig0018036:+87234 Msa1363280:CDS
GGTGGAGTGTCATTGACGTT+AGG 0.399182 tig0018036:+87635 Msa1363280:CDS
TTACAACAACATGGTGGAAA+TGG 0.409545 tig0018036:+87659 Msa1363280:CDS
CTCCACCACTGCTGCCACCT+TGG 0.420187 tig0018036:-87619 None:intergenic
GGCTTCTTGAGAGACCGGTT+TGG 0.434607 tig0018036:-86934 None:intergenic
ATATGCTTATCAACGTCGCT+TGG 0.454930 tig0018036:-86902 None:intergenic
TGGTGGAAATGGAGTGAGTT+TGG 0.455316 tig0018036:+87670 Msa1363280:CDS
AAATACATTTCTTCCACCAT+TGG 0.455432 tig0018036:-87260 None:intergenic
ATGATTGTTGTTGATGATAG+AGG 0.462600 tig0018036:-87444 None:intergenic
CACCACTGCTGCCACCTTGG+TGG 0.462654 tig0018036:-87616 None:intergenic
AAGGGACCAAATTGAAGAAC+CGG 0.465720 tig0018036:+87730 Msa1363280:CDS
TTCTTGAGAGACCGGTTTGG+CGG 0.471377 tig0018036:-86931 None:intergenic
TCTTGAGAGACCGGTTTGGC+GGG 0.473357 tig0018036:-86930 None:intergenic
GTGGAGTGTCATTGACGTTA+GGG 0.474230 tig0018036:+87636 Msa1363280:CDS
TGCCTGGCTTCTTGAGAGAC+CGG 0.474444 tig0018036:-86939 None:intergenic
GAACAAATATTATGCCATAC+AGG 0.476848 tig0018036:+87780 Msa1363280:CDS
TATGCTTATCAACGTCGCTT+GGG 0.485472 tig0018036:-86901 None:intergenic
CACCAAGGTGGCAGCAGTGG+TGG 0.491693 tig0018036:+87617 Msa1363280:CDS
TCCAAAAGAGAGTACTGAAC+CGG 0.513134 tig0018036:-87749 None:intergenic
TTCCACCAAGGTGGCAGCAG+TGG 0.532318 tig0018036:+87614 Msa1363280:CDS
GACACAATTGCTACATGACT+TGG 0.534189 tig0018036:+87814 Msa1363280:CDS
ACGACTCCTTCGAATCGATT+CGG 0.534329 tig0018036:+87412 Msa1363280:CDS
AACCGGTCTCTCAAGAAGCC+AGG 0.535546 tig0018036:+86937 Msa1363280:CDS
AACACGACAACCTCGGACGG+AGG 0.540366 tig0018036:+87308 Msa1363280:CDS
AGCCGCGGATGCGTTTGGAT+CGG 0.552377 tig0018036:+87514 Msa1363280:CDS
ACATCATTCTTCTTCTGACA+TGG 0.555858 tig0018036:+87565 Msa1363280:CDS
ACAAAGAAACACGACAACCT+CGG 0.564649 tig0018036:+87301 Msa1363280:CDS
CACATTCCGAATCGATTCGA+AGG 0.565105 tig0018036:-87418 None:intergenic
AGAGTCCAATGTTCTATACA+AGG 0.568503 tig0018036:+87711 Msa1363280:CDS
ATCTCAAACTCAACCTCATG+AGG 0.577882 tig0018036:+87379 Msa1363280:CDS
ATGCCATACAGGAATCTCAT+GGG 0.578629 tig0018036:+87791 Msa1363280:CDS
TGGTCCCTTGTATAGAACAT+TGG 0.582832 tig0018036:-87716 None:intergenic
AGAAACACGACAACCTCGGA+CGG 0.587887 tig0018036:+87305 Msa1363280:CDS
AACATTGGACTCTGTGATGT+TGG 0.591723 tig0018036:-87701 None:intergenic
AATATTGTTTCCTCCGTCCG+AGG 0.597602 tig0018036:-87318 None:intergenic
GTCCCCATGAGATTCCTGTA+TGG 0.609295 tig0018036:-87794 None:intergenic
GAATCGATTCGAAGGAGTCG+TGG 0.616503 tig0018036:-87410 None:intergenic
TATGCCATACAGGAATCTCA+TGG 0.626506 tig0018036:+87790 Msa1363280:CDS
ATTGGACTCTGTGATGTTGG+TGG 0.631848 tig0018036:-87698 None:intergenic
GAGACTATGGAAGCCAATGG+TGG 0.635999 tig0018036:+87247 Msa1363280:CDS
TTGGACTCTGTGATGTTGGT+GGG 0.640625 tig0018036:-87697 None:intergenic
AACCGATCCAAACGCATCCG+CGG 0.640907 tig0018036:-87516 None:intergenic
AGTGAGACTATGGAAGCCAA+TGG 0.648201 tig0018036:+87244 Msa1363280:CDS
GAGTCCAATGTTCTATACAA+GGG 0.649085 tig0018036:+87712 Msa1363280:CDS
GAATCATCACCAATTAGCCG+CGG 0.649592 tig0018036:+87499 Msa1363280:CDS
ATGGTTGCTGCTTACACAAG+TGG 0.652558 tig0018036:+87584 Msa1363280:CDS
ACGTTAGGGTTACAACAACA+TGG 0.673570 tig0018036:+87650 Msa1363280:CDS
TGCCATACAGGAATCTCATG+GGG 0.679427 tig0018036:+87792 Msa1363280:CDS
GGTGAGAGTTTCCACCAAGG+TGG 0.686723 tig0018036:+87605 Msa1363280:CDS
AGTGGTGAGAGTTTCCACCA+AGG 0.759976 tig0018036:+87602 Msa1363280:CDS
TTAGGGTTACAACAACATGG+TGG 0.784784 tig0018036:+87653 Msa1363280:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTCTAATTCTATTAAAAGTA+AGG + tig0018036:86416-86435 Msa1363280:intron 15.0%
!!! GTTGTTTTTATTTTTTGAAA+TGG - tig0018036:86478-86497 None:intergenic 15.0%
!! CAAAAAATAAAAACAACTAT+TGG + tig0018036:86481-86500 Msa1363280:intron 15.0%
!!! TACTTCTTTTTATTTTTATG+TGG + tig0018036:86727-86746 Msa1363280:intron 15.0%
!! ATTAAATAGTCATATATAGA+TGG + tig0018036:87028-87047 Msa1363280:intron 15.0%
!! TTATTAATTAATTGAAAAGC+AGG + tig0018036:87196-87215 Msa1363280:intron 15.0%
!! TTCTAATTCTATTAAAAGTA+AGG + tig0018036:86416-86435 Msa1363280:intron 15.0%
!!! GTTGTTTTTATTTTTTGAAA+TGG - tig0018036:86478-86497 None:intergenic 15.0%
!! CAAAAAATAAAAACAACTAT+TGG + tig0018036:86481-86500 Msa1363280:intron 15.0%
!!! TACTTCTTTTTATTTTTATG+TGG + tig0018036:86727-86746 Msa1363280:intron 15.0%
!! ATTAAATAGTCATATATAGA+TGG + tig0018036:87028-87047 Msa1363280:intron 15.0%
!! TTATTAATTAATTGAAAAGC+AGG + tig0018036:87196-87215 Msa1363280:intron 15.0%
!! TACAAAGGAAGAATTATTTA+AGG - tig0018036:86753-86772 None:intergenic 20.0%
!! TTAAATAATTCTTCCTTTGT+AGG + tig0018036:86752-86771 Msa1363280:intron 20.0%
!! TAAATAATTCTTCCTTTGTA+GGG + tig0018036:86753-86772 Msa1363280:intron 20.0%
!! ATTAATATATTTCCCTTCAT+TGG + tig0018036:86979-86998 Msa1363280:intron 20.0%
!! TACAAAGGAAGAATTATTTA+AGG - tig0018036:86753-86772 None:intergenic 20.0%
!! TTAAATAATTCTTCCTTTGT+AGG + tig0018036:86752-86771 Msa1363280:intron 20.0%
!! TAAATAATTCTTCCTTTGTA+GGG + tig0018036:86753-86772 Msa1363280:intron 20.0%
!! ATTAATATATTTCCCTTCAT+TGG + tig0018036:86979-86998 Msa1363280:intron 20.0%
! ACAACATACATATGAAAAGA+TGG - tig0018036:86638-86657 None:intergenic 25.0%
! AATTAATATATGACCTTGTG+TGG - tig0018036:86842-86861 None:intergenic 25.0%
! TAATAAAAAATCAACATGCC+TGG - tig0018036:86958-86977 None:intergenic 25.0%
!!! AATATCAAATTTTAGGGTGA+CGG - tig0018036:87065-87084 None:intergenic 25.0%
!!! ATTGGTTTTGAAGTACATTA+AGG - tig0018036:87361-87380 None:intergenic 25.0%
! ACAACATACATATGAAAAGA+TGG - tig0018036:86638-86657 None:intergenic 25.0%
! AATTAATATATGACCTTGTG+TGG - tig0018036:86842-86861 None:intergenic 25.0%
! TAATAAAAAATCAACATGCC+TGG - tig0018036:86958-86977 None:intergenic 25.0%
!!! AATATCAAATTTTAGGGTGA+CGG - tig0018036:87065-87084 None:intergenic 25.0%
!!! ATTGGTTTTGAAGTACATTA+AGG - tig0018036:87361-87380 None:intergenic 25.0%
GAAAGTAACAAAAAATGCGT+AGG - tig0018036:86595-86614 None:intergenic 30.0%
ATGAAAAGATGGAATCTGAA+TGG - tig0018036:86627-86646 None:intergenic 30.0%
!! AAAGAGTTTTGTCCAATGAA+GGG - tig0018036:86994-87013 None:intergenic 30.0%
!!! CGCAACTTTGAAAGTTTTTT+TGG + tig0018036:87156-87175 Msa1363280:intron 30.0%
TTGAAAAGCAGGTATCAAAT+TGG + tig0018036:87207-87226 Msa1363280:intron 30.0%
AAATACATTTCTTCCACCAT+TGG - tig0018036:87263-87282 None:intergenic 30.0%
! AATGGTGGAAGAAATGTATT+TGG + tig0018036:87262-87281 Msa1363280:CDS 30.0%
!! ATGATTGTTGTTGATGATAG+AGG - tig0018036:87447-87466 None:intergenic 30.0%
GAACAAATATTATGCCATAC+AGG + tig0018036:87780-87799 Msa1363280:CDS 30.0%
GAAAGTAACAAAAAATGCGT+AGG - tig0018036:86595-86614 None:intergenic 30.0%
ATGAAAAGATGGAATCTGAA+TGG - tig0018036:86627-86646 None:intergenic 30.0%
!! AAAGAGTTTTGTCCAATGAA+GGG - tig0018036:86994-87013 None:intergenic 30.0%
!!! CGCAACTTTGAAAGTTTTTT+TGG + tig0018036:87156-87175 Msa1363280:intron 30.0%
TTGAAAAGCAGGTATCAAAT+TGG + tig0018036:87207-87226 Msa1363280:intron 30.0%
AAATACATTTCTTCCACCAT+TGG - tig0018036:87263-87282 None:intergenic 30.0%
! AATGGTGGAAGAAATGTATT+TGG + tig0018036:87262-87281 Msa1363280:CDS 30.0%
!! ATGATTGTTGTTGATGATAG+AGG - tig0018036:87447-87466 None:intergenic 30.0%
GAACAAATATTATGCCATAC+AGG + tig0018036:87780-87799 Msa1363280:CDS 30.0%
AACTATTGGCAGTTGTGTTA+TGG + tig0018036:86495-86514 Msa1363280:intron 35.0%
AAGAAGAAATGACCCTACAA+AGG - tig0018036:86768-86787 None:intergenic 35.0%
!! CGACGTTGATAAGCATATTT+TGG + tig0018036:86907-86926 Msa1363280:CDS 35.0%
!! GAAAGAGTTTTGTCCAATGA+AGG - tig0018036:86995-87014 None:intergenic 35.0%
TTAATGCAAGAGTGAGACTA+TGG + tig0018036:87234-87253 Msa1363280:CDS 35.0%
ACATCATTCTTCTTCTGACA+TGG + tig0018036:87565-87584 Msa1363280:CDS 35.0%
! TTACAACAACATGGTGGAAA+TGG + tig0018036:87659-87678 Msa1363280:CDS 35.0%
AGAGTCCAATGTTCTATACA+AGG + tig0018036:87711-87730 Msa1363280:CDS 35.0%
GAGTCCAATGTTCTATACAA+GGG + tig0018036:87712-87731 Msa1363280:CDS 35.0%
AACTATTGGCAGTTGTGTTA+TGG + tig0018036:86495-86514 Msa1363280:intron 35.0%
AAGAAGAAATGACCCTACAA+AGG - tig0018036:86768-86787 None:intergenic 35.0%
!! CGACGTTGATAAGCATATTT+TGG + tig0018036:86907-86926 Msa1363280:CDS 35.0%
!! GAAAGAGTTTTGTCCAATGA+AGG - tig0018036:86995-87014 None:intergenic 35.0%
TTAATGCAAGAGTGAGACTA+TGG + tig0018036:87234-87253 Msa1363280:CDS 35.0%
ACATCATTCTTCTTCTGACA+TGG + tig0018036:87565-87584 Msa1363280:CDS 35.0%
! TTACAACAACATGGTGGAAA+TGG + tig0018036:87659-87678 Msa1363280:CDS 35.0%
AGAGTCCAATGTTCTATACA+AGG + tig0018036:87711-87730 Msa1363280:CDS 35.0%
GAGTCCAATGTTCTATACAA+GGG + tig0018036:87712-87731 Msa1363280:CDS 35.0%
TAATTCATACGTGCCACACA+AGG + tig0018036:86826-86845 Msa1363280:intron 40.0%
TATGCTTATCAACGTCGCTT+GGG - tig0018036:86904-86923 None:intergenic 40.0%
ATATGCTTATCAACGTCGCT+TGG - tig0018036:86905-86924 None:intergenic 40.0%
ACAAAGAAACACGACAACCT+CGG + tig0018036:87301-87320 Msa1363280:CDS 40.0%
! CATGAGGTTGAGTTTGAGAT+TGG - tig0018036:87379-87398 None:intergenic 40.0%
ATCTCAAACTCAACCTCATG+AGG + tig0018036:87379-87398 Msa1363280:CDS 40.0%
ACGTTAGGGTTACAACAACA+TGG + tig0018036:87650-87669 Msa1363280:CDS 40.0%
TTAGGGTTACAACAACATGG+TGG + tig0018036:87653-87672 Msa1363280:CDS 40.0%
AACATTGGACTCTGTGATGT+TGG - tig0018036:87704-87723 None:intergenic 40.0%
TGGTCCCTTGTATAGAACAT+TGG - tig0018036:87719-87738 None:intergenic 40.0%
AAGGGACCAAATTGAAGAAC+CGG + tig0018036:87730-87749 Msa1363280:CDS 40.0%
! ACTGAACCGGTTCTTCAATT+TGG - tig0018036:87739-87758 None:intergenic 40.0%
!! TCCAAAAGAGAGTACTGAAC+CGG - tig0018036:87752-87771 None:intergenic 40.0%
! GTTCAGTACTCTCTTTTGGA+TGG + tig0018036:87752-87771 Msa1363280:CDS 40.0%
! TACTCTCTTTTGGATGGTGA+AGG + tig0018036:87758-87777 Msa1363280:CDS 40.0%
TATGCCATACAGGAATCTCA+TGG + tig0018036:87790-87809 Msa1363280:CDS 40.0%
ATGCCATACAGGAATCTCAT+GGG + tig0018036:87791-87810 Msa1363280:CDS 40.0%
GACACAATTGCTACATGACT+TGG + tig0018036:87814-87833 Msa1363280:CDS 40.0%
TAATTCATACGTGCCACACA+AGG + tig0018036:86826-86845 Msa1363280:intron 40.0%
TATGCTTATCAACGTCGCTT+GGG - tig0018036:86904-86923 None:intergenic 40.0%
ATATGCTTATCAACGTCGCT+TGG - tig0018036:86905-86924 None:intergenic 40.0%
ACAAAGAAACACGACAACCT+CGG + tig0018036:87301-87320 Msa1363280:CDS 40.0%
! CATGAGGTTGAGTTTGAGAT+TGG - tig0018036:87379-87398 None:intergenic 40.0%
ATCTCAAACTCAACCTCATG+AGG + tig0018036:87379-87398 Msa1363280:CDS 40.0%
ACGTTAGGGTTACAACAACA+TGG + tig0018036:87650-87669 Msa1363280:CDS 40.0%
TTAGGGTTACAACAACATGG+TGG + tig0018036:87653-87672 Msa1363280:CDS 40.0%
AACATTGGACTCTGTGATGT+TGG - tig0018036:87704-87723 None:intergenic 40.0%
TGGTCCCTTGTATAGAACAT+TGG - tig0018036:87719-87738 None:intergenic 40.0%
AAGGGACCAAATTGAAGAAC+CGG + tig0018036:87730-87749 Msa1363280:CDS 40.0%
! ACTGAACCGGTTCTTCAATT+TGG - tig0018036:87739-87758 None:intergenic 40.0%
!! TCCAAAAGAGAGTACTGAAC+CGG - tig0018036:87752-87771 None:intergenic 40.0%
! GTTCAGTACTCTCTTTTGGA+TGG + tig0018036:87752-87771 Msa1363280:CDS 40.0%
! TACTCTCTTTTGGATGGTGA+AGG + tig0018036:87758-87777 Msa1363280:CDS 40.0%
TATGCCATACAGGAATCTCA+TGG + tig0018036:87790-87809 Msa1363280:CDS 40.0%
ATGCCATACAGGAATCTCAT+GGG + tig0018036:87791-87810 Msa1363280:CDS 40.0%
GACACAATTGCTACATGACT+TGG + tig0018036:87814-87833 Msa1363280:CDS 40.0%
AGTGAGACTATGGAAGCCAA+TGG + tig0018036:87244-87263 Msa1363280:CDS 45.0%
AATATTGTTTCCTCCGTCCG+AGG - tig0018036:87321-87340 None:intergenic 45.0%
ACGACTCCTTCGAATCGATT+CGG + tig0018036:87412-87431 Msa1363280:CDS 45.0%
!! CACATTCCGAATCGATTCGA+AGG - tig0018036:87421-87440 None:intergenic 45.0%
GAATCATCACCAATTAGCCG+CGG + tig0018036:87499-87518 Msa1363280:CDS 45.0%
! ATGGTTGCTGCTTACACAAG+TGG + tig0018036:87584-87603 Msa1363280:CDS 45.0%
! GTGGAGTGTCATTGACGTTA+GGG + tig0018036:87636-87655 Msa1363280:CDS 45.0%
TGGTGGAAATGGAGTGAGTT+TGG + tig0018036:87670-87689 Msa1363280:CDS 45.0%
TTGGACTCTGTGATGTTGGT+GGG - tig0018036:87700-87719 None:intergenic 45.0%
ATTGGACTCTGTGATGTTGG+TGG - tig0018036:87701-87720 None:intergenic 45.0%
!! ACCGGTTCAGTACTCTCTTT+TGG + tig0018036:87748-87767 Msa1363280:CDS 45.0%
TGCCATACAGGAATCTCATG+GGG + tig0018036:87792-87811 Msa1363280:CDS 45.0%
AGTGAGACTATGGAAGCCAA+TGG + tig0018036:87244-87263 Msa1363280:CDS 45.0%
AATATTGTTTCCTCCGTCCG+AGG - tig0018036:87321-87340 None:intergenic 45.0%
ACGACTCCTTCGAATCGATT+CGG + tig0018036:87412-87431 Msa1363280:CDS 45.0%
!! CACATTCCGAATCGATTCGA+AGG - tig0018036:87421-87440 None:intergenic 45.0%
GAATCATCACCAATTAGCCG+CGG + tig0018036:87499-87518 Msa1363280:CDS 45.0%
! ATGGTTGCTGCTTACACAAG+TGG + tig0018036:87584-87603 Msa1363280:CDS 45.0%
! GTGGAGTGTCATTGACGTTA+GGG + tig0018036:87636-87655 Msa1363280:CDS 45.0%
TGGTGGAAATGGAGTGAGTT+TGG + tig0018036:87670-87689 Msa1363280:CDS 45.0%
TTGGACTCTGTGATGTTGGT+GGG - tig0018036:87700-87719 None:intergenic 45.0%
ATTGGACTCTGTGATGTTGG+TGG - tig0018036:87701-87720 None:intergenic 45.0%
!! ACCGGTTCAGTACTCTCTTT+TGG + tig0018036:87748-87767 Msa1363280:CDS 45.0%
TGCCATACAGGAATCTCATG+GGG + tig0018036:87792-87811 Msa1363280:CDS 45.0%
!!! TTTTTTTGTATAATTTTTAT+AGG + tig0018036:86876-86895 Msa1363280:intron 5.0%
!!! AATATTAATATCAAATTTTA+GGG - tig0018036:87071-87090 None:intergenic 5.0%
!!! AAATATTAATATCAAATTTT+AGG - tig0018036:87072-87091 None:intergenic 5.0%
!!! ATTATTGTAAATTTTTTAAT+TGG + tig0018036:87129-87148 Msa1363280:intron 5.0%
!!! TTTTTTTGTATAATTTTTAT+AGG + tig0018036:86876-86895 Msa1363280:intron 5.0%
!!! AATATTAATATCAAATTTTA+GGG - tig0018036:87071-87090 None:intergenic 5.0%
!!! AAATATTAATATCAAATTTT+AGG - tig0018036:87072-87091 None:intergenic 5.0%
!!! ATTATTGTAAATTTTTTAAT+TGG + tig0018036:87129-87148 Msa1363280:intron 5.0%
!!! CATATTTTGGCCCGCCAAAC+CGG + tig0018036:86920-86939 Msa1363280:CDS 50.0%
!! TTCTTGAGAGACCGGTTTGG+CGG - tig0018036:86934-86953 None:intergenic 50.0%
GAGACTATGGAAGCCAATGG+TGG + tig0018036:87247-87266 Msa1363280:CDS 50.0%
AGAAACACGACAACCTCGGA+CGG + tig0018036:87305-87324 Msa1363280:CDS 50.0%
! CGTGGCTTTTGATCCTCATG+AGG - tig0018036:87395-87414 None:intergenic 50.0%
!! GAATCGATTCGAAGGAGTCG+TGG - tig0018036:87413-87432 None:intergenic 50.0%
AGTGGTGAGAGTTTCCACCA+AGG + tig0018036:87602-87621 Msa1363280:CDS 50.0%
! GGTGGAGTGTCATTGACGTT+AGG + tig0018036:87635-87654 Msa1363280:CDS 50.0%
GTCCCCATGAGATTCCTGTA+TGG - tig0018036:87797-87816 None:intergenic 50.0%
!!! CATATTTTGGCCCGCCAAAC+CGG + tig0018036:86920-86939 Msa1363280:CDS 50.0%
!! TTCTTGAGAGACCGGTTTGG+CGG - tig0018036:86934-86953 None:intergenic 50.0%
GAGACTATGGAAGCCAATGG+TGG + tig0018036:87247-87266 Msa1363280:CDS 50.0%
AGAAACACGACAACCTCGGA+CGG + tig0018036:87305-87324 Msa1363280:CDS 50.0%
! CGTGGCTTTTGATCCTCATG+AGG - tig0018036:87395-87414 None:intergenic 50.0%
!! GAATCGATTCGAAGGAGTCG+TGG - tig0018036:87413-87432 None:intergenic 50.0%
AGTGGTGAGAGTTTCCACCA+AGG + tig0018036:87602-87621 Msa1363280:CDS 50.0%
! GGTGGAGTGTCATTGACGTT+AGG + tig0018036:87635-87654 Msa1363280:CDS 50.0%
GTCCCCATGAGATTCCTGTA+TGG - tig0018036:87797-87816 None:intergenic 50.0%
!! TCTTGAGAGACCGGTTTGGC+GGG - tig0018036:86933-86952 None:intergenic 55.0%
GGCTTCTTGAGAGACCGGTT+TGG - tig0018036:86937-86956 None:intergenic 55.0%
AACCGGTCTCTCAAGAAGCC+AGG + tig0018036:86937-86956 Msa1363280:CDS 55.0%
TGCCTGGCTTCTTGAGAGAC+CGG - tig0018036:86942-86961 None:intergenic 55.0%
CAAACGCATCCGCGGCTAAT+TGG - tig0018036:87511-87530 None:intergenic 55.0%
CAATTAGCCGCGGATGCGTT+TGG + tig0018036:87509-87528 Msa1363280:CDS 55.0%
AACCGATCCAAACGCATCCG+CGG - tig0018036:87519-87538 None:intergenic 55.0%
GGTGAGAGTTTCCACCAAGG+TGG + tig0018036:87605-87624 Msa1363280:CDS 55.0%
!! TCTTGAGAGACCGGTTTGGC+GGG - tig0018036:86933-86952 None:intergenic 55.0%
GGCTTCTTGAGAGACCGGTT+TGG - tig0018036:86937-86956 None:intergenic 55.0%
AACCGGTCTCTCAAGAAGCC+AGG + tig0018036:86937-86956 Msa1363280:CDS 55.0%
TGCCTGGCTTCTTGAGAGAC+CGG - tig0018036:86942-86961 None:intergenic 55.0%
CAAACGCATCCGCGGCTAAT+TGG - tig0018036:87511-87530 None:intergenic 55.0%
CAATTAGCCGCGGATGCGTT+TGG + tig0018036:87509-87528 Msa1363280:CDS 55.0%
AACCGATCCAAACGCATCCG+CGG - tig0018036:87519-87538 None:intergenic 55.0%
GGTGAGAGTTTCCACCAAGG+TGG + tig0018036:87605-87624 Msa1363280:CDS 55.0%
AACACGACAACCTCGGACGG+AGG + tig0018036:87308-87327 Msa1363280:CDS 60.0%
AGCCGCGGATGCGTTTGGAT+CGG + tig0018036:87514-87533 Msa1363280:CDS 60.0%
TTCCACCAAGGTGGCAGCAG+TGG + tig0018036:87614-87633 Msa1363280:CDS 60.0%
AACACGACAACCTCGGACGG+AGG + tig0018036:87308-87327 Msa1363280:CDS 60.0%
AGCCGCGGATGCGTTTGGAT+CGG + tig0018036:87514-87533 Msa1363280:CDS 60.0%
TTCCACCAAGGTGGCAGCAG+TGG + tig0018036:87614-87633 Msa1363280:CDS 60.0%
CACCACTGCTGCCACCTTGG+TGG - tig0018036:87619-87638 None:intergenic 65.0%
CACCAAGGTGGCAGCAGTGG+TGG + tig0018036:87617-87636 Msa1363280:CDS 65.0%
CTCCACCACTGCTGCCACCT+TGG - tig0018036:87622-87641 None:intergenic 65.0%
CACCACTGCTGCCACCTTGG+TGG - tig0018036:87619-87638 None:intergenic 65.0%
CACCAAGGTGGCAGCAGTGG+TGG + tig0018036:87617-87636 Msa1363280:CDS 65.0%
CTCCACCACTGCTGCCACCT+TGG - tig0018036:87622-87641 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
tig0018036 gene 86403 87841 86403 ID=Msa1363280;Name=Msa1363280
tig0018036 mRNA 86403 87841 86403 ID=Msa1363280-mRNA-1;Parent=Msa1363280;Name=Msa1363280-mRNA-1;_AED=0.39;_eAED=0.40;_QI=0|0|0|1|0|0|4|0|233
tig0018036 exon 86403 86407 86403 ID=Msa1363280-mRNA-1:exon:13470;Parent=Msa1363280-mRNA-1
tig0018036 exon 86898 86962 86898 ID=Msa1363280-mRNA-1:exon:13471;Parent=Msa1363280-mRNA-1
tig0018036 exon 87170 87177 87170 ID=Msa1363280-mRNA-1:exon:13472;Parent=Msa1363280-mRNA-1
tig0018036 exon 87218 87841 87218 ID=Msa1363280-mRNA-1:exon:13473;Parent=Msa1363280-mRNA-1
tig0018036 CDS 86403 86407 86403 ID=Msa1363280-mRNA-1:cds;Parent=Msa1363280-mRNA-1
tig0018036 CDS 86898 86962 86898 ID=Msa1363280-mRNA-1:cds;Parent=Msa1363280-mRNA-1
tig0018036 CDS 87170 87177 87170 ID=Msa1363280-mRNA-1:cds;Parent=Msa1363280-mRNA-1
tig0018036 CDS 87218 87841 87218 ID=Msa1363280-mRNA-1:cds;Parent=Msa1363280-mRNA-1
Gene Sequence

>Msa1363280

ATGAAGTACCCAAGCGACGTTGATAAGCATATTTTGGCCCGCCAAACCGGTCTCTCAAGAAGCCAGGCATTTTTTTTGGTATCAAATTGGTTTATTAATGCAAGAGTGAGACTATGGAAGCCAATGGTGGAAGAAATGTATTTGGAAGAAGAGAAAGAGCAACAAAGAAACACGACAACCTCGGACGGAGGAAACAATATTAATCATGAAGAAGATAACCTTAATGTACTTCAAAACCAATCTCAAACTCAACCTCATGAGGATCAAAAGCCACGACTCCTTCGAATCGATTCGGAATGTGTCTCCTCTATCATCAACAACAATCATGATCATAAAAATGATGCTAATAATAAGAATTTGAATCATCACCAATTAGCCGCGGATGCGTTTGGATCGGTTGATATTGATTTTTCATCTTATAATACACATCATTCTTCTTCTGACATGGTTGCTGCTTACACAAGTGGTGAGAGTTTCCACCAAGGTGGCAGCAGTGGTGGAGTGTCATTGACGTTAGGGTTACAACAACATGGTGGAAATGGAGTGAGTTTGGCTTTCCCACCAACATCACAGAGTCCAATGTTCTATACAAGGGACCAAATTGAAGAACCGGTTCAGTACTCTCTTTTGGATGGTGAAGGAACAAATATTATGCCATACAGGAATCTCATGGGGACACAATTGCTACATGACTTGGCATGA

Protein sequence

>Msa1363280

MKYPSDVDKHILARQTGLSRSQAFFLVSNWFINARVRLWKPMVEEMYLEEEKEQQRNTTTSDGGNNINHEEDNLNVLQNQSQTQPHEDQKPRLLRIDSECVSSIINNNHDHKNDANNKNLNHHQLAADAFGSVDIDFSSYNTHHSSSDMVAAYTSGESFHQGGSSGGVSLTLGLQQHGGNGVSLAFPPTSQSPMFYTRDQIEEPVQYSLLDGEGTNIMPYRNLMGTQLLHDLA*