AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0535570


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0535570 MtrunA17_Chr4g0009461 87.419 310 15 5 1 287 1 309 0.0 514
Msa0535570 MtrunA17_Chr3g0112181 35.472 265 111 11 36 283 33 254 3.33e-29 112
Msa0535570 MtrunA17_Chr5g0435711 50.000 108 35 4 4 107 7 99 1.16e-24 99.8
Msa0535570 MtrunA17_Chr5g0400571 68.966 58 14 2 35 90 58 113 1.17e-19 86.7
Msa0535570 MtrunA17_Chr2g0315591 76.744 43 7 2 51 90 41 83 2.68e-16 76.6
Msa0535570 MtrunA17_Chr1g0184381 76.923 39 7 1 53 89 29 67 8.67e-14 68.9
Msa0535570 MtrunA17_Chr7g0239441 64.286 42 13 1 59 98 37 78 8.30e-12 62.4
Msa0535570 MtrunA17_Chr4g0032111 72.222 36 8 1 58 91 20 55 1.09e-11 62.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0535570 AT2G37740.1 70.270 74 14 3 28 99 10 77 3.35e-24 100
Msa0535570 AT5G06070.1 53.684 95 31 3 1 91 2 87 1.22e-22 94.4
Msa0535570 AT4G17810.2 66.667 54 15 2 35 86 21 73 7.41e-18 80.1
Msa0535570 AT4G17810.1 66.667 54 15 2 35 86 21 73 7.71e-18 80.9
Msa0535570 AT2G42410.2 63.636 55 15 2 52 104 40 91 8.24e-16 75.5
Msa0535570 AT2G42410.1 63.636 55 15 2 52 104 40 91 8.24e-16 75.5
Msa0535570 AT2G42410.3 63.636 55 15 2 52 104 66 117 1.03e-15 75.5
Msa0535570 AT3G23130.1 76.744 43 8 1 51 91 37 79 5.12e-15 73.2

Find 57 sgRNAs with CRISPR-Local

Find 136 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AAGAGTTGAAAGGAGAAATT+AGG 0.144993 4_1:+11908543 None:intergenic
TCTACCTCCTCAATTGAATT+AGG 0.148497 4_1:+11908191 None:intergenic
AAACCACAAGTAGGAGAATT+AGG 0.187380 4_1:+11908665 None:intergenic
ATCACCTTCGTCGGCTTCTA+AGG 0.266590 4_1:-11908585 Msa0535570:CDS
ACCCCTTCTTCTTCTTGTTA+TGG 0.299377 4_1:-11908989 Msa0535570:CDS
CCAAAGGTATAATAGATTCT+AGG 0.312053 4_1:-11908433 Msa0535570:CDS
AGAGTTGAAAGGAGAAATTA+GGG 0.331194 4_1:+11908544 None:intergenic
CTTCTTGTTATGGTGATTCA+TGG 0.338824 4_1:-11908979 Msa0535570:CDS
CTACCTCCTCAATTGAATTA+GGG 0.346783 4_1:+11908192 None:intergenic
TGTAGCTATGAGCTTGAATT+TGG 0.353912 4_1:-11908375 Msa0535570:CDS
TTTAGGTCAGCACAAGCATT+AGG 0.361635 4_1:-11908860 Msa0535570:intron
CCTAGAATCTATTATACCTT+TGG 0.378017 4_1:+11908433 None:intergenic
TTATAAACATCTTGAATAAG+TGG 0.390650 4_1:+11908701 None:intergenic
TCGGCTTCTAAGGCTTTATT+CGG 0.401138 4_1:-11908575 Msa0535570:CDS
CTTTCAACTCTTCTGAATCA+TGG 0.401376 4_1:-11908532 Msa0535570:CDS
TTCAATTGAGGAGGTAGATC+TGG 0.403141 4_1:-11908186 Msa0535570:CDS
GAACATAATATATCATTTCC+AGG 0.405382 4_1:+11908500 None:intergenic
GATTCTAGGTTTCGAGGTAA+AGG 0.408364 4_1:-11908419 Msa0535570:CDS
ATTCTAGGTTTCGAGGTAAA+GGG 0.409155 4_1:-11908418 Msa0535570:CDS
GATGCAGCTGCAGGGTCACT+TGG 0.420108 4_1:-11908935 Msa0535570:CDS
TTTGCTGAAGATGCAGCTGC+AGG 0.424497 4_1:-11908944 Msa0535570:CDS
AACCACAAGTAGGAGAATTA+GGG 0.432833 4_1:+11908666 None:intergenic
GATCTTTGTATCAATGGAAC+AGG 0.433376 4_1:-11909080 None:intergenic
AAGTAGGAGAATTAGGGAAT+AGG 0.457191 4_1:+11908672 None:intergenic
AAGCTACAAGAATATGATCT+TGG 0.459400 4_1:+11908896 None:intergenic
TTCCCTAATTCTCCTACTTG+TGG 0.462438 4_1:-11908668 Msa0535570:intron
AGGAGGTAGATCTGGAGTTA+AGG 0.476987 4_1:-11908178 Msa0535570:CDS
GTTCAACCCTAATTCAATTG+AGG 0.483460 4_1:-11908198 Msa0535570:CDS
TTCTTGTTATGGTGATTCAT+GGG 0.486889 4_1:-11908978 Msa0535570:CDS
AAGATTTCAATTGCAAGAAG+AGG 0.493658 4_1:-11908304 Msa0535570:CDS
TTCAGCTTCATCACCTTCGT+CGG 0.494636 4_1:-11908594 Msa0535570:intron
CGATTTCAAGCTCGTGATGA+TGG 0.497652 4_1:+11908744 None:intergenic
ATGCAGCTGCAGGGTCACTT+GGG 0.499136 4_1:-11908934 Msa0535570:CDS
GAATCATGGCTGAATTTACC+TGG 0.500114 4_1:-11908518 Msa0535570:CDS
GTACTCTCAAATTCAACAAG+TGG 0.518666 4_1:+11908335 None:intergenic
CACCATAACAAGAAGAAGAA+GGG 0.522923 4_1:+11908987 None:intergenic
TCACCATAACAAGAAGAAGA+AGG 0.532766 4_1:+11908986 None:intergenic
CAATGGAACAGGATCAATGT+TGG 0.535662 4_1:-11909069 Msa0535570:CDS
CTACAAGAATATGATCTTGG+TGG 0.544295 4_1:+11908899 None:intergenic
TGGAGTTAAGGCTTGGTACA+AGG 0.549906 4_1:-11908166 Msa0535570:CDS
TGCAGCTGCAGGGTCACTTG+GGG 0.554361 4_1:-11908933 Msa0535570:CDS
TTGCTGAAGATGCAGCTGCA+GGG 0.559256 4_1:-11908943 Msa0535570:CDS
CATGATTCAGAAGAGTTGAA+AGG 0.568556 4_1:+11908533 None:intergenic
GTAGATCTGGAGTTAAGGCT+TGG 0.574970 4_1:-11908173 Msa0535570:CDS
TTTGATCATAAAGTCTCCAA+AGG 0.581337 4_1:-11908449 Msa0535570:CDS
ATAATAGATTCTAGGTTTCG+AGG 0.582395 4_1:-11908425 Msa0535570:CDS
TTCTAGGTTTCGAGGTAAAG+GGG 0.591482 4_1:-11908417 Msa0535570:CDS
CAACCCTAATTCAATTGAGG+AGG 0.592265 4_1:-11908195 Msa0535570:CDS
TTATAAACCAAACCACAAGT+AGG 0.601660 4_1:+11908656 None:intergenic
TTTACTGCAACTATATACAC+AGG 0.614043 4_1:-11907912 Msa0535570:CDS
ACCATAACAAGAAGAAGAAG+GGG 0.616165 4_1:+11908988 None:intergenic
TCTAGGTTTCGAGGTAAAGG+GGG 0.621509 4_1:-11908416 Msa0535570:CDS
GCAGCTGCAGGGTCACTTGG+GGG 0.624450 4_1:-11908932 Msa0535570:CDS
AAGGCTTGGTACAAGGTCCA+AGG 0.631211 4_1:-11908159 Msa0535570:intron
AGGTCAGCACAAGCATTAGG+TGG 0.642240 4_1:-11908857 Msa0535570:CDS
AACAACTTTGCAGATATCTG+AGG 0.662909 4_1:+11907948 None:intergenic
AAAGCCTTAGAAGCCGACGA+AGG 0.711061 4_1:+11908581 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTTGTTTTTTTTTTCATGA+GGG - chr4_1:11908978-11908997 Msa0535570:CDS 15.0%
!!! ATTTGTTTTTTTTTTCATGA+GGG - chr4_1:11908978-11908997 Msa0535570:CDS 15.0%
!! TTATAAACATCTTGAATAAG+TGG + chr4_1:11908256-11908275 None:intergenic 20.0%
!!! CATATTTTGTTGTTTATCAA+AGG + chr4_1:11908719-11908738 None:intergenic 20.0%
!!! GATTTGTTTTTTTTTTCATG+AGG - chr4_1:11908977-11908996 Msa0535570:CDS 20.0%
!! TTATAAACATCTTGAATAAG+TGG + chr4_1:11908256-11908275 None:intergenic 20.0%
!!! CATATTTTGTTGTTTATCAA+AGG + chr4_1:11908719-11908738 None:intergenic 20.0%
!!! GATTTGTTTTTTTTTTCATG+AGG - chr4_1:11908977-11908996 Msa0535570:CDS 20.0%
!! TAAAGAATCTGATCATTTTG+TGG + chr4_1:11908169-11908188 None:intergenic 25.0%
! AAATGATCAAGATGACAATT+AGG + chr4_1:11908334-11908353 None:intergenic 25.0%
! GAACATAATATATCATTTCC+AGG + chr4_1:11908457-11908476 None:intergenic 25.0%
! ATGTTCATTAAGAACAATGA+AGG + chr4_1:11908867-11908886 None:intergenic 25.0%
! CTTAATTTCTTTACCTTACA+AGG - chr4_1:11908936-11908955 Msa0535570:CDS 25.0%
!! TAAAGAATCTGATCATTTTG+TGG + chr4_1:11908169-11908188 None:intergenic 25.0%
! AAATGATCAAGATGACAATT+AGG + chr4_1:11908334-11908353 None:intergenic 25.0%
! GAACATAATATATCATTTCC+AGG + chr4_1:11908457-11908476 None:intergenic 25.0%
! ATGTTCATTAAGAACAATGA+AGG + chr4_1:11908867-11908886 None:intergenic 25.0%
! CTTAATTTCTTTACCTTACA+AGG - chr4_1:11908936-11908955 Msa0535570:CDS 25.0%
! TTCTTGTTATGGTGATTCAT+GGG - chr4_1:11907976-11907995 Msa0535570:intron 30.0%
AAGCTACAAGAATATGATCT+TGG + chr4_1:11908061-11908080 None:intergenic 30.0%
TTATAAACCAAACCACAAGT+AGG + chr4_1:11908301-11908320 None:intergenic 30.0%
AGAGTTGAAAGGAGAAATTA+GGG + chr4_1:11908413-11908432 None:intergenic 30.0%
AAGAGTTGAAAGGAGAAATT+AGG + chr4_1:11908414-11908433 None:intergenic 30.0%
TTTGATCATAAAGTCTCCAA+AGG - chr4_1:11908505-11908524 Msa0535570:CDS 30.0%
CCTAGAATCTATTATACCTT+TGG + chr4_1:11908524-11908543 None:intergenic 30.0%
! CCAAAGGTATAATAGATTCT+AGG - chr4_1:11908521-11908540 Msa0535570:CDS 30.0%
ATAATAGATTCTAGGTTTCG+AGG - chr4_1:11908529-11908548 Msa0535570:CDS 30.0%
AAGATTTCAATTGCAAGAAG+AGG - chr4_1:11908650-11908669 Msa0535570:intron 30.0%
! TATGCTACTTAACTATACCT+TGG + chr4_1:11908815-11908834 None:intergenic 30.0%
CAACAATCTATGAACATAAG+AGG + chr4_1:11908900-11908919 None:intergenic 30.0%
TGATGAAAAACTTCCTTGTA+AGG + chr4_1:11908952-11908971 None:intergenic 30.0%
TTTACTGCAACTATATACAC+AGG - chr4_1:11909042-11909061 Msa0535570:CDS 30.0%
! TTCTTGTTATGGTGATTCAT+GGG - chr4_1:11907976-11907995 Msa0535570:intron 30.0%
AAGCTACAAGAATATGATCT+TGG + chr4_1:11908061-11908080 None:intergenic 30.0%
TTATAAACCAAACCACAAGT+AGG + chr4_1:11908301-11908320 None:intergenic 30.0%
AGAGTTGAAAGGAGAAATTA+GGG + chr4_1:11908413-11908432 None:intergenic 30.0%
AAGAGTTGAAAGGAGAAATT+AGG + chr4_1:11908414-11908433 None:intergenic 30.0%
TTTGATCATAAAGTCTCCAA+AGG - chr4_1:11908505-11908524 Msa0535570:CDS 30.0%
CCTAGAATCTATTATACCTT+TGG + chr4_1:11908524-11908543 None:intergenic 30.0%
! CCAAAGGTATAATAGATTCT+AGG - chr4_1:11908521-11908540 Msa0535570:CDS 30.0%
ATAATAGATTCTAGGTTTCG+AGG - chr4_1:11908529-11908548 Msa0535570:CDS 30.0%
AAGATTTCAATTGCAAGAAG+AGG - chr4_1:11908650-11908669 Msa0535570:intron 30.0%
! TATGCTACTTAACTATACCT+TGG + chr4_1:11908815-11908834 None:intergenic 30.0%
CAACAATCTATGAACATAAG+AGG + chr4_1:11908900-11908919 None:intergenic 30.0%
TGATGAAAAACTTCCTTGTA+AGG + chr4_1:11908952-11908971 None:intergenic 30.0%
TTTACTGCAACTATATACAC+AGG - chr4_1:11909042-11909061 Msa0535570:CDS 30.0%
ACCATAACAAGAAGAAGAAG+GGG + chr4_1:11907969-11907988 None:intergenic 35.0%
CACCATAACAAGAAGAAGAA+GGG + chr4_1:11907970-11907989 None:intergenic 35.0%
TCACCATAACAAGAAGAAGA+AGG + chr4_1:11907971-11907990 None:intergenic 35.0%
! CTTCTTGTTATGGTGATTCA+TGG - chr4_1:11907975-11907994 Msa0535570:intron 35.0%
CTACAAGAATATGATCTTGG+TGG + chr4_1:11908058-11908077 None:intergenic 35.0%
! GCTTTTGTAGAAGAGAGTTT+AGG - chr4_1:11908077-11908096 Msa0535570:intron 35.0%
AAGTAGGAGAATTAGGGAAT+AGG + chr4_1:11908285-11908304 None:intergenic 35.0%
AACCACAAGTAGGAGAATTA+GGG + chr4_1:11908291-11908310 None:intergenic 35.0%
AAACCACAAGTAGGAGAATT+AGG + chr4_1:11908292-11908311 None:intergenic 35.0%
TAATTCTCCTACTTGTGGTT+TGG - chr4_1:11908291-11908310 Msa0535570:CDS 35.0%
CATGATTCAGAAGAGTTGAA+AGG + chr4_1:11908424-11908443 None:intergenic 35.0%
CTTTCAACTCTTCTGAATCA+TGG - chr4_1:11908422-11908441 Msa0535570:CDS 35.0%
ATTCTAGGTTTCGAGGTAAA+GGG - chr4_1:11908536-11908555 Msa0535570:CDS 35.0%
TGTAGCTATGAGCTTGAATT+TGG - chr4_1:11908579-11908598 Msa0535570:CDS 35.0%
GTACTCTCAAATTCAACAAG+TGG + chr4_1:11908622-11908641 None:intergenic 35.0%
GTTCAACCCTAATTCAATTG+AGG - chr4_1:11908756-11908775 Msa0535570:CDS 35.0%
CTACCTCCTCAATTGAATTA+GGG + chr4_1:11908765-11908784 None:intergenic 35.0%
TCTACCTCCTCAATTGAATT+AGG + chr4_1:11908766-11908785 None:intergenic 35.0%
AACAACTTTGCAGATATCTG+AGG + chr4_1:11909009-11909028 None:intergenic 35.0%
ACCATAACAAGAAGAAGAAG+GGG + chr4_1:11907969-11907988 None:intergenic 35.0%
CACCATAACAAGAAGAAGAA+GGG + chr4_1:11907970-11907989 None:intergenic 35.0%
TCACCATAACAAGAAGAAGA+AGG + chr4_1:11907971-11907990 None:intergenic 35.0%
! CTTCTTGTTATGGTGATTCA+TGG - chr4_1:11907975-11907994 Msa0535570:intron 35.0%
CTACAAGAATATGATCTTGG+TGG + chr4_1:11908058-11908077 None:intergenic 35.0%
! GCTTTTGTAGAAGAGAGTTT+AGG - chr4_1:11908077-11908096 Msa0535570:intron 35.0%
AAGTAGGAGAATTAGGGAAT+AGG + chr4_1:11908285-11908304 None:intergenic 35.0%
AACCACAAGTAGGAGAATTA+GGG + chr4_1:11908291-11908310 None:intergenic 35.0%
AAACCACAAGTAGGAGAATT+AGG + chr4_1:11908292-11908311 None:intergenic 35.0%
TAATTCTCCTACTTGTGGTT+TGG - chr4_1:11908291-11908310 Msa0535570:CDS 35.0%
CATGATTCAGAAGAGTTGAA+AGG + chr4_1:11908424-11908443 None:intergenic 35.0%
CTTTCAACTCTTCTGAATCA+TGG - chr4_1:11908422-11908441 Msa0535570:CDS 35.0%
ATTCTAGGTTTCGAGGTAAA+GGG - chr4_1:11908536-11908555 Msa0535570:CDS 35.0%
TGTAGCTATGAGCTTGAATT+TGG - chr4_1:11908579-11908598 Msa0535570:CDS 35.0%
GTACTCTCAAATTCAACAAG+TGG + chr4_1:11908622-11908641 None:intergenic 35.0%
GTTCAACCCTAATTCAATTG+AGG - chr4_1:11908756-11908775 Msa0535570:CDS 35.0%
CTACCTCCTCAATTGAATTA+GGG + chr4_1:11908765-11908784 None:intergenic 35.0%
TCTACCTCCTCAATTGAATT+AGG + chr4_1:11908766-11908785 None:intergenic 35.0%
AACAACTTTGCAGATATCTG+AGG + chr4_1:11909009-11909028 None:intergenic 35.0%
ACCCCTTCTTCTTCTTGTTA+TGG - chr4_1:11907965-11907984 Msa0535570:intron 40.0%
TTTAGGTCAGCACAAGCATT+AGG - chr4_1:11908094-11908113 Msa0535570:intron 40.0%
TTCCCTAATTCTCCTACTTG+TGG - chr4_1:11908286-11908305 Msa0535570:CDS 40.0%
!! TCGGCTTCTAAGGCTTTATT+CGG - chr4_1:11908379-11908398 Msa0535570:CDS 40.0%
GAATCATGGCTGAATTTACC+TGG - chr4_1:11908436-11908455 Msa0535570:CDS 40.0%
GATTCTAGGTTTCGAGGTAA+AGG - chr4_1:11908535-11908554 Msa0535570:CDS 40.0%
TTCTAGGTTTCGAGGTAAAG+GGG - chr4_1:11908537-11908556 Msa0535570:CDS 40.0%
CAACCCTAATTCAATTGAGG+AGG - chr4_1:11908759-11908778 Msa0535570:CDS 40.0%
TTCAATTGAGGAGGTAGATC+TGG - chr4_1:11908768-11908787 Msa0535570:CDS 40.0%
ACCCCTTCTTCTTCTTGTTA+TGG - chr4_1:11907965-11907984 Msa0535570:intron 40.0%
TTTAGGTCAGCACAAGCATT+AGG - chr4_1:11908094-11908113 Msa0535570:intron 40.0%
TTCCCTAATTCTCCTACTTG+TGG - chr4_1:11908286-11908305 Msa0535570:CDS 40.0%
!! TCGGCTTCTAAGGCTTTATT+CGG - chr4_1:11908379-11908398 Msa0535570:CDS 40.0%
GAATCATGGCTGAATTTACC+TGG - chr4_1:11908436-11908455 Msa0535570:CDS 40.0%
GATTCTAGGTTTCGAGGTAA+AGG - chr4_1:11908535-11908554 Msa0535570:CDS 40.0%
TTCTAGGTTTCGAGGTAAAG+GGG - chr4_1:11908537-11908556 Msa0535570:CDS 40.0%
CAACCCTAATTCAATTGAGG+AGG - chr4_1:11908759-11908778 Msa0535570:CDS 40.0%
TTCAATTGAGGAGGTAGATC+TGG - chr4_1:11908768-11908787 Msa0535570:CDS 40.0%
CGATTTCAAGCTCGTGATGA+TGG + chr4_1:11908213-11908232 None:intergenic 45.0%
TTCAGCTTCATCACCTTCGT+CGG - chr4_1:11908360-11908379 Msa0535570:intron 45.0%
TCTAGGTTTCGAGGTAAAGG+GGG - chr4_1:11908538-11908557 Msa0535570:CDS 45.0%
! AGGAGGTAGATCTGGAGTTA+AGG - chr4_1:11908776-11908795 Msa0535570:CDS 45.0%
! GTAGATCTGGAGTTAAGGCT+TGG - chr4_1:11908781-11908800 Msa0535570:CDS 45.0%
! TGGAGTTAAGGCTTGGTACA+AGG - chr4_1:11908788-11908807 Msa0535570:CDS 45.0%
CGATTTCAAGCTCGTGATGA+TGG + chr4_1:11908213-11908232 None:intergenic 45.0%
TTCAGCTTCATCACCTTCGT+CGG - chr4_1:11908360-11908379 Msa0535570:intron 45.0%
TCTAGGTTTCGAGGTAAAGG+GGG - chr4_1:11908538-11908557 Msa0535570:CDS 45.0%
! AGGAGGTAGATCTGGAGTTA+AGG - chr4_1:11908776-11908795 Msa0535570:CDS 45.0%
! GTAGATCTGGAGTTAAGGCT+TGG - chr4_1:11908781-11908800 Msa0535570:CDS 45.0%
! TGGAGTTAAGGCTTGGTACA+AGG - chr4_1:11908788-11908807 Msa0535570:CDS 45.0%
TTTGCTGAAGATGCAGCTGC+AGG - chr4_1:11908010-11908029 Msa0535570:intron 50.0%
TTGCTGAAGATGCAGCTGCA+GGG - chr4_1:11908011-11908030 Msa0535570:intron 50.0%
GGTCACTTGGGGGATGTATA+TGG - chr4_1:11908032-11908051 Msa0535570:intron 50.0%
AGGTCAGCACAAGCATTAGG+TGG - chr4_1:11908097-11908116 Msa0535570:intron 50.0%
!! ATCACCTTCGTCGGCTTCTA+AGG - chr4_1:11908369-11908388 Msa0535570:intron 50.0%
AAAGCCTTAGAAGCCGACGA+AGG + chr4_1:11908376-11908395 None:intergenic 50.0%
! AAGGCTTGGTACAAGGTCCA+AGG - chr4_1:11908795-11908814 Msa0535570:CDS 50.0%
TTTGCTGAAGATGCAGCTGC+AGG - chr4_1:11908010-11908029 Msa0535570:intron 50.0%
TTGCTGAAGATGCAGCTGCA+GGG - chr4_1:11908011-11908030 Msa0535570:intron 50.0%
GGTCACTTGGGGGATGTATA+TGG - chr4_1:11908032-11908051 Msa0535570:intron 50.0%
AGGTCAGCACAAGCATTAGG+TGG - chr4_1:11908097-11908116 Msa0535570:intron 50.0%
!! ATCACCTTCGTCGGCTTCTA+AGG - chr4_1:11908369-11908388 Msa0535570:intron 50.0%
AAAGCCTTAGAAGCCGACGA+AGG + chr4_1:11908376-11908395 None:intergenic 50.0%
! AAGGCTTGGTACAAGGTCCA+AGG - chr4_1:11908795-11908814 Msa0535570:CDS 50.0%
ATGCAGCTGCAGGGTCACTT+GGG - chr4_1:11908020-11908039 Msa0535570:intron 55.0%
ATGCAGCTGCAGGGTCACTT+GGG - chr4_1:11908020-11908039 Msa0535570:intron 55.0%
GATGCAGCTGCAGGGTCACT+TGG - chr4_1:11908019-11908038 Msa0535570:intron 60.0%
TGCAGCTGCAGGGTCACTTG+GGG - chr4_1:11908021-11908040 Msa0535570:intron 60.0%
GATGCAGCTGCAGGGTCACT+TGG - chr4_1:11908019-11908038 Msa0535570:intron 60.0%
TGCAGCTGCAGGGTCACTTG+GGG - chr4_1:11908021-11908040 Msa0535570:intron 60.0%
GCAGCTGCAGGGTCACTTGG+GGG - chr4_1:11908022-11908041 Msa0535570:intron 65.0%
GCAGCTGCAGGGTCACTTGG+GGG - chr4_1:11908022-11908041 Msa0535570:intron 65.0%
Chromosome Type Strat End Strand Name
chr4_1 gene 11907887 11909089 11907887 ID=Msa0535570;Name=Msa0535570
chr4_1 mRNA 11907887 11909089 11907887 ID=Msa0535570-mRNA-1;Parent=Msa0535570;Name=Msa0535570-mRNA-1;_AED=0.06;_eAED=0.06;_QI=0|0|0|1|0|0|5|0|314
chr4_1 exon 11908884 11909089 11908884 ID=Msa0535570-mRNA-1:exon:3830;Parent=Msa0535570-mRNA-1
chr4_1 exon 11908669 11908877 11908669 ID=Msa0535570-mRNA-1:exon:3829;Parent=Msa0535570-mRNA-1
chr4_1 exon 11908371 11908611 11908371 ID=Msa0535570-mRNA-1:exon:3828;Parent=Msa0535570-mRNA-1
chr4_1 exon 11908160 11908364 11908160 ID=Msa0535570-mRNA-1:exon:3827;Parent=Msa0535570-mRNA-1
chr4_1 exon 11907887 11907970 11907887 ID=Msa0535570-mRNA-1:exon:3826;Parent=Msa0535570-mRNA-1
chr4_1 CDS 11908884 11909089 11908884 ID=Msa0535570-mRNA-1:cds;Parent=Msa0535570-mRNA-1
chr4_1 CDS 11908669 11908877 11908669 ID=Msa0535570-mRNA-1:cds;Parent=Msa0535570-mRNA-1
chr4_1 CDS 11908371 11908611 11908371 ID=Msa0535570-mRNA-1:cds;Parent=Msa0535570-mRNA-1
chr4_1 CDS 11908160 11908364 11908160 ID=Msa0535570-mRNA-1:cds;Parent=Msa0535570-mRNA-1
chr4_1 CDS 11907887 11907970 11907887 ID=Msa0535570-mRNA-1:cds;Parent=Msa0535570-mRNA-1
Gene Sequence

>Msa0535570

ATGGAACAGGATCAATGTTGGATTCAAACAAAGAGAAAATACTCAATGAGTAATTCAAATCTTGCTACTTCACTAACTACCCCTTCTTCTTCTTGTTATGGTGATTCATGGGAAGAACAAGCTTTTGCTGAAGATGCAGCTGCAGGGTCACTTGGGGGATGTATATGGCCACCAAGATCATATTCTTGTAGCTTTTGTAGAAGAGAGTCAGCACAAGCATTAGGTGGACATATGAATGTTCATAGAAAAGATAGAGCAAGACTCAAACAACAACCACAAAATGATCAGATTCTTTATCATAATCATCATCATCATCACCATCATCACGAGCTTGAAATCGCAACTCATCATGTTCAAAAGCCACTTATTCAAGATGTTTATAATAATAACCTATTCCCTAATTCTCCTACTTGTGCTTCATCACCTTCGTCGGCTTCTAAGGCTTTATTCGGAGATGAAACCCTAATTTCTCCTTTCAACTCTTCTGAATCATGGCTGAATTTACCTGGAAATGATATATTATGTTCAACAAAGTTTCAACTTGCTGTTGATAATTTTGATCATAAAGTCTCCAAAGGTATAATAGATTCTAGGTTTCGAGGTAAAGGGGGAAACGACAATGAAAGTGATGTAGCTATGAGCTTGAATTTGGTTTTAACTCATCCACTTGTTGAATTTGAGAGTACTAAAGAAGAAGATTTCAATTGCAAGAAGAGGAAAAAAGATTCTTCATCAAATCAATTATTCTCTAACTCAAGCACCTTTGATAAACAACAAAATATGCAAGCAAAGATGTTTGAGTTCAACCCTAATTCAATTGAGGAGGTAGATCTGGAGTTAAGGCTTGGTACAAGGTCCAAGCCTCAGATATCTGCAAAGTTGTTTGTCATGATAGCATTTACTGCAACTATATACACAGGCTTTTGTAAACTTCTTCTTCTTTGA

Protein sequence

>Msa0535570

MEQDQCWIQTKRKYSMSNSNLATSLTTPSSSCYGDSWEEQAFAEDAAAGSLGGCIWPPRSYSCSFCRRESAQALGGHMNVHRKDRARLKQQPQNDQILYHNHHHHHHHHELEIATHHVQKPLIQDVYNNNLFPNSPTCASSPSSASKALFGDETLISPFNSSESWLNLPGNDILCSTKFQLAVDNFDHKVSKGIIDSRFRGKGGNDNESDVAMSLNLVLTHPLVEFESTKEEDFNCKKRKKDSSSNQLFSNSSTFDKQQNMQAKMFEFNPNSIEEVDLELRLGTRSKPQISAKLFVMIAFTATIYTGFCKLLLL*