AlfalfaGEDB | Msa0535570

M. sativa cultivar zhongmu-4 / Msa0535570

KEGG: -
GO: GO:0000003 GO:0003006 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0007275 GO:0008150 GO:0009266 GO:0009409 GO:0009628 GO:0009791 GO:0009889 GO:0009908 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048367 GO:0048437 GO:0048438 GO:0048441 GO:0048465 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0090567 GO:0099402 GO:0140110 GO:1903506 GO:2000112 GO:2001141
PFAM: -

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0535570	AES87103.1	88.131	337	16	5	1	314	1	336	0.0	569

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0535570	sp\|O80942\|ZFP10_ARATH	70.270	74	14	3	28	99	10	77	3.30e-23	100

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0535570	G7JTD7	88.131	337	16	5	1	314	1	336	0.0	569

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0004340	Msa0535570	-0.812920	3.325763e-51	-8.615850e-47
Msa0004580	Msa0535570	0.819035	1.434500e-52	-8.615850e-47
Msa0004940	Msa0535570	0.807597	4.677058e-50	-8.615850e-47
Msa0004990	Msa0535570	0.805727	1.160894e-49	-8.615850e-47
Msa0009840	Msa0535570	0.804351	2.252227e-49	-8.615850e-47
Msa0010150	Msa0535570	0.929400	7.339669e-93	-8.615850e-47
Msa0011010	Msa0535570	0.821475	3.957978e-53	-8.615850e-47
Msa0011040	Msa0535570	0.826540	2.564809e-54	-8.615850e-47
Msa0011060	Msa0535570	-0.807130	5.873866e-50	-8.615850e-47
Msa0011100	Msa0535570	-0.803740	3.017536e-49	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0535570	MtrunA17_Chr4g0009461	87.419	310	15	5	1	287	1	309	0.0	514
Msa0535570	MtrunA17_Chr3g0112181	35.472	265	111	11	36	283	33	254	3.33e-29	112
Msa0535570	MtrunA17_Chr5g0435711	50.000	108	35	4	4	107	7	99	1.16e-24	99.8
Msa0535570	MtrunA17_Chr5g0400571	68.966	58	14	2	35	90	58	113	1.17e-19	86.7
Msa0535570	MtrunA17_Chr2g0315591	76.744	43	7	2	51	90	41	83	2.68e-16	76.6
Msa0535570	MtrunA17_Chr1g0184381	76.923	39	7	1	53	89	29	67	8.67e-14	68.9
Msa0535570	MtrunA17_Chr7g0239441	64.286	42	13	1	59	98	37	78	8.30e-12	62.4
Msa0535570	MtrunA17_Chr4g0032111	72.222	36	8	1	58	91	20	55	1.09e-11	62.4

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0535570	AT2G37740.1	70.270	74	14	3	28	99	10	77	3.35e-24	100
Msa0535570	AT5G06070.1	53.684	95	31	3	1	91	2	87	1.22e-22	94.4
Msa0535570	AT4G17810.2	66.667	54	15	2	35	86	21	73	7.41e-18	80.1
Msa0535570	AT4G17810.1	66.667	54	15	2	35	86	21	73	7.71e-18	80.9
Msa0535570	AT2G42410.2	63.636	55	15	2	52	104	40	91	8.24e-16	75.5
Msa0535570	AT2G42410.1	63.636	55	15	2	52	104	40	91	8.24e-16	75.5
Msa0535570	AT2G42410.3	63.636	55	15	2	52	104	66	117	1.03e-15	75.5
Msa0535570	AT3G23130.1	76.744	43	8	1	51	91	37	79	5.12e-15	73.2

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Find 57 sgRNAs with CRISPR-Local

Find 136 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACCACAAGTAGGAGAATT+AGG	0.187380	4_1:+11908665	None:intergenic
AAAGCCTTAGAAGCCGACGA+AGG	0.711061	4_1:+11908581	None:intergenic
AACAACTTTGCAGATATCTG+AGG	0.662909	4_1:+11907948	None:intergenic
AACCACAAGTAGGAGAATTA+GGG	0.432833	4_1:+11908666	None:intergenic
AAGAGTTGAAAGGAGAAATT+AGG	0.144993	4_1:+11908543	None:intergenic
AAGATTTCAATTGCAAGAAG+AGG	0.493658	4_1:-11908304	Msa0535570:CDS
AAGCTACAAGAATATGATCT+TGG	0.459400	4_1:+11908896	None:intergenic
AAGGCTTGGTACAAGGTCCA+AGG	0.631211	4_1:-11908159	Msa0535570:intron
AAGTAGGAGAATTAGGGAAT+AGG	0.457191	4_1:+11908672	None:intergenic
ACCATAACAAGAAGAAGAAG+GGG	0.616165	4_1:+11908988	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAGCTACAAGAATATGATCT+TGG	+	chr4_1:11908061-11908080	None:intergenic	30.0%
TTATAAACCAAACCACAAGT+AGG	+	chr4_1:11908301-11908320	None:intergenic	30.0%
AGAGTTGAAAGGAGAAATTA+GGG	+	chr4_1:11908413-11908432	None:intergenic	30.0%
AAGAGTTGAAAGGAGAAATT+AGG	+	chr4_1:11908414-11908433	None:intergenic	30.0%
TTTGATCATAAAGTCTCCAA+AGG	-	chr4_1:11908505-11908524	Msa0535570:CDS	30.0%
CCTAGAATCTATTATACCTT+TGG	+	chr4_1:11908524-11908543	None:intergenic	30.0%
ATAATAGATTCTAGGTTTCG+AGG	-	chr4_1:11908529-11908548	Msa0535570:CDS	30.0%
AAGATTTCAATTGCAAGAAG+AGG	-	chr4_1:11908650-11908669	Msa0535570:intron	30.0%
CAACAATCTATGAACATAAG+AGG	+	chr4_1:11908900-11908919	None:intergenic	30.0%
TGATGAAAAACTTCCTTGTA+AGG	+	chr4_1:11908952-11908971	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr4_1	gene	11907887	11909089	11907887	ID=Msa0535570;Name=Msa0535570
chr4_1	mRNA	11907887	11909089	11907887	ID=Msa0535570-mRNA-1;Parent=Msa0535570;Name=Msa0535570-mRNA-1;_AED=0.06;_eAED=0.06;_QI=0\|0\|0\|1\|0\|0\|5\|0\|314
chr4_1	exon	11908884	11909089	11908884	ID=Msa0535570-mRNA-1:exon:3830;Parent=Msa0535570-mRNA-1
chr4_1	exon	11908669	11908877	11908669	ID=Msa0535570-mRNA-1:exon:3829;Parent=Msa0535570-mRNA-1
chr4_1	exon	11908371	11908611	11908371	ID=Msa0535570-mRNA-1:exon:3828;Parent=Msa0535570-mRNA-1
chr4_1	exon	11908160	11908364	11908160	ID=Msa0535570-mRNA-1:exon:3827;Parent=Msa0535570-mRNA-1
chr4_1	exon	11907887	11907970	11907887	ID=Msa0535570-mRNA-1:exon:3826;Parent=Msa0535570-mRNA-1
chr4_1	CDS	11908884	11909089	11908884	ID=Msa0535570-mRNA-1:cds;Parent=Msa0535570-mRNA-1
chr4_1	CDS	11908669	11908877	11908669	ID=Msa0535570-mRNA-1:cds;Parent=Msa0535570-mRNA-1
chr4_1	CDS	11908371	11908611	11908371	ID=Msa0535570-mRNA-1:cds;Parent=Msa0535570-mRNA-1
chr4_1	CDS	11908160	11908364	11908160	ID=Msa0535570-mRNA-1:cds;Parent=Msa0535570-mRNA-1
chr4_1	CDS	11907887	11907970	11907887	ID=Msa0535570-mRNA-1:cds;Parent=Msa0535570-mRNA-1

Gene Sequence

>Msa0535570

ATGGAACAGGATCAATGTTGGATTCAAACAAAGAGAAAATACTCAATGAGTAATTCAAATCTTGCTACTTCACTAACTACCCCTTCTTCTTCTTGTTATGGTGATTCATGGGAAGAACAAGCTTTTGCTGAAGATGCAGCTGCAGGGTCACTTGGGGGATGTATATGGCCACCAAGATCATATTCTTGTAGCTTTTGTAGAAGAGAGTCAGCACAAGCATTAGGTGGACATATGAATGTTCATAGAAAAGATAGAGCAAGACTCAAACAACAACCACAAAATGATCAGATTCTTTATCATAATCATCATCATCATCACCATCATCACGAGCTTGAAATCGCAACTCATCATGTTCAAAAGCCACTTATTCAAGATGTTTATAATAATAACCTATTCCCTAATTCTCCTACTTGTGCTTCATCACCTTCGTCGGCTTCTAAGGCTTTATTCGGAGATGAAACCCTAATTTCTCCTTTCAACTCTTCTGAATCATGGCTGAATTTACCTGGAAATGATATATTATGTTCAACAAAGTTTCAACTTGCTGTTGATAATTTTGATCATAAAGTCTCCAAAGGTATAATAGATTCTAGGTTTCGAGGTAAAGGGGGAAACGACAATGAAAGTGATGTAGCTATGAGCTTGAATTTGGTTTTAACTCATCCACTTGTTGAATTTGAGAGTACTAAAGAAGAAGATTTCAATTGCAAGAAGAGGAAAAAAGATTCTTCATCAAATCAATTATTCTCTAACTCAAGCACCTTTGATAAACAACAAAATATGCAAGCAAAGATGTTTGAGTTCAACCCTAATTCAATTGAGGAGGTAGATCTGGAGTTAAGGCTTGGTACAAGGTCCAAGCCTCAGATATCTGCAAAGTTGTTTGTCATGATAGCATTTACTGCAACTATATACACAGGCTTTTGTAAACTTCTTCTTCTTTGA

Protein sequence

>Msa0535570

MEQDQCWIQTKRKYSMSNSNLATSLTTPSSSCYGDSWEEQAFAEDAAAGSLGGCIWPPRSYSCSFCRRESAQALGGHMNVHRKDRARLKQQPQNDQILYHNHHHHHHHHELEIATHHVQKPLIQDVYNNNLFPNSPTCASSPSSASKALFGDETLISPFNSSESWLNLPGNDILCSTKFQLAVDNFDHKVSKGIIDSRFRGKGGNDNESDVAMSLNLVLTHPLVEFESTKEEDFNCKKRKKDSSSNQLFSNSSTFDKQQNMQAKMFEFNPNSIEEVDLELRLGTRSKPQISAKLFVMIAFTATIYTGFCKLLLL*