Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0878300 | XP_024641634.1 | 94.570 | 442 | 24 | 0 | 1 | 442 | 1 | 442 | 0.0 | 825 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0878300 | sp|Q4I8E9|PNS1_GIBZE | 29.560 | 159 | 104 | 3 | 203 | 354 | 280 | 437 | 4.83e-11 | 68.2 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0878300 | A0A396HDR5 | 94.159 | 428 | 25 | 0 | 15 | 442 | 9 | 436 | 0.0 | 796 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0878300 | Msa0944040 | 0.967514 | 2.208671e-127 | -8.615850e-47 |
| Msa0878300 | Msa0980320 | 0.917007 | 8.966169e-86 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0878300 | MtrunA17_Chr6g0460811 | 94.159 | 428 | 25 | 0 | 15 | 442 | 9 | 436 | 0.0 | 796 |
| Msa0878300 | MtrunA17_Chr7g0254111 | 66.355 | 428 | 142 | 2 | 15 | 441 | 24 | 450 | 0.0 | 581 |
| Msa0878300 | MtrunA17_Chr3g0090051 | 31.643 | 414 | 270 | 5 | 33 | 438 | 152 | 560 | 6.62e-67 | 224 |
| Msa0878300 | MtrunA17_Chr5g0422761 | 24.252 | 301 | 213 | 6 | 132 | 421 | 149 | 445 | 2.05e-20 | 93.6 |
| Msa0878300 | MtrunA17_Chr1g0210161 | 24.585 | 301 | 212 | 6 | 132 | 421 | 155 | 451 | 6.06e-20 | 92.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0878300 | AT3G04440.2 | 51.079 | 417 | 199 | 4 | 23 | 438 | 22 | 434 | 1.12e-144 | 421 |
| Msa0878300 | AT3G03700.1 | 51.079 | 417 | 199 | 4 | 23 | 438 | 45 | 457 | 1.34e-144 | 421 |
| Msa0878300 | AT3G04440.1 | 51.079 | 417 | 199 | 4 | 23 | 438 | 45 | 457 | 1.63e-144 | 421 |
| Msa0878300 | AT5G17830.2 | 40.191 | 418 | 235 | 8 | 25 | 438 | 24 | 430 | 3.73e-98 | 301 |
| Msa0878300 | AT5G17830.1 | 40.191 | 418 | 235 | 8 | 25 | 438 | 45 | 451 | 6.41e-98 | 301 |
| Msa0878300 | AT5G13760.1 | 30.594 | 438 | 287 | 7 | 14 | 442 | 126 | 555 | 5.23e-63 | 213 |
| Msa0878300 | AT1G25500.3 | 25.545 | 321 | 218 | 8 | 137 | 441 | 102 | 417 | 8.73e-17 | 82.4 |
| Msa0878300 | AT1G25500.2 | 25.545 | 321 | 218 | 8 | 137 | 441 | 160 | 475 | 2.46e-16 | 81.6 |
| Msa0878300 | AT1G25500.1 | 25.368 | 272 | 185 | 7 | 137 | 395 | 34 | 300 | 1.29e-14 | 74.7 |
Find 82 sgRNAs with CRISPR-Local
Find 187 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCTACTGAATTGTCCATTTA+TGG | 0.064661 | 6_1:+19066392 | Msa0878300:CDS |
| TTTCCTCATTGGGTACTTTA+TGG | 0.147771 | 6_1:+19066415 | Msa0878300:CDS |
| GCTAACTTCCTTATTCATTT+TGG | 0.154021 | 6_1:+19065857 | Msa0878300:CDS |
| ACACCTATTGTAAGACTTAT+TGG | 0.168236 | 6_1:-19065618 | None:intergenic |
| ACCATTTGTTTCAACCTTTA+GGG | 0.222439 | 6_1:+19066055 | Msa0878300:CDS |
| TGTCAACATCATCATGCTTT+TGG | 0.230506 | 6_1:-19065748 | None:intergenic |
| AAGCTTTAAGAGCAACATTT+TGG | 0.236479 | 6_1:+19065541 | Msa0878300:CDS |
| TACCATTTGTTTCAACCTTT+AGG | 0.276772 | 6_1:+19066054 | Msa0878300:CDS |
| GTAATTATCCTCACAATCTA+TGG | 0.290297 | 6_1:+19065390 | Msa0878300:CDS |
| GTAGCCTAGTGTGTGGAATT+TGG | 0.290535 | 6_1:+19066345 | Msa0878300:CDS |
| CCATTTATGGTTTCCTCATT+GGG | 0.293802 | 6_1:+19066405 | Msa0878300:CDS |
| CTTGCTTCTAATTTCACTTT+TGG | 0.295934 | 6_1:+19065368 | Msa0878300:CDS |
| TTCAATCCCTTTATAGTTGT+TGG | 0.296085 | 6_1:+19065664 | Msa0878300:CDS |
| TTCTTGTGTTAGTTGCTATA+TGG | 0.298267 | 6_1:+19066130 | Msa0878300:CDS |
| CCCAATGAGGAAACCATAAA+TGG | 0.304813 | 6_1:-19066405 | None:intergenic |
| TACAATAGGTGTTATTGCTT+TGG | 0.307956 | 6_1:+19065629 | Msa0878300:CDS |
| GACTGACCCAACAACTATAA+AGG | 0.311474 | 6_1:-19065671 | None:intergenic |
| TCCATTTATGGTTTCCTCAT+TGG | 0.319191 | 6_1:+19066404 | Msa0878300:CDS |
| CATGTTGGAGTTTATAATAA+AGG | 0.330732 | 6_1:+19066200 | Msa0878300:CDS |
| GTCTCCTTAGTGGAGTGGCT+GGG | 0.331127 | 6_1:+19066312 | Msa0878300:CDS |
| CAAAATCACCAAAATGAATA+AGG | 0.335004 | 6_1:-19065865 | None:intergenic |
| TTCTTGTGAGTTGTGGAAAT+AGG | 0.337097 | 6_1:+19066165 | Msa0878300:CDS |
| AGGGTAAAGTATATGAATTT+AGG | 0.344465 | 6_1:+19065945 | Msa0878300:CDS |
| TCTTGTGTTAGTTGCTATAT+GGG | 0.346364 | 6_1:+19066131 | Msa0878300:CDS |
| GACACTTTAAAGCACTTCAT+TGG | 0.349658 | 6_1:+19066005 | Msa0878300:CDS |
| CAATATTTCCGGTTAGTGTT+TGG | 0.364426 | 6_1:-19065311 | None:intergenic |
| TGTCTCCTTAGTGGAGTGGC+TGG | 0.365845 | 6_1:+19066311 | Msa0878300:CDS |
| TTTGCAGGTTCGATTGGCTT+TGG | 0.390678 | 6_1:+19067436 | Msa0878300:intron |
| TTTCTTGTGTTTGGAATTGG+AGG | 0.403496 | 6_1:+19065807 | Msa0878300:CDS |
| CTATACCTTGGTAGAGTTTG+TGG | 0.406067 | 6_1:-19064839 | None:intergenic |
| TTCATTGGAAGTGTTTCAAT+TGG | 0.409381 | 6_1:+19066020 | Msa0878300:CDS |
| TCAATCCCTTTATAGTTGTT+GGG | 0.410200 | 6_1:+19065665 | Msa0878300:CDS |
| ATGTTGGAGTTTATAATAAA+GGG | 0.413420 | 6_1:+19066201 | Msa0878300:CDS |
| TTTCTAAACCAAACACTAAC+CGG | 0.416246 | 6_1:+19065303 | Msa0878300:CDS |
| AGTGGAGGGTACCATTTCAT+TGG | 0.419687 | 6_1:-19065447 | None:intergenic |
| GCAACTGCACCATGCGCATT+GGG | 0.426436 | 6_1:-19067538 | None:intergenic |
| GTGAGTTGTGGAAATAGGTT+TGG | 0.428707 | 6_1:+19066170 | Msa0878300:CDS |
| ACTGACCCAACAACTATAAA+GGG | 0.439021 | 6_1:-19065670 | None:intergenic |
| TTCAATGTACACAAACATAA+TGG | 0.439086 | 6_1:-19065592 | None:intergenic |
| ACAATTTCCATCCAATGAAA+TGG | 0.439986 | 6_1:+19065436 | Msa0878300:CDS |
| TCTCCTTAGTGGAGTGGCTG+GGG | 0.442367 | 6_1:+19066313 | Msa0878300:CDS |
| TCTCCAATAAGTCTTACAAT+AGG | 0.448899 | 6_1:+19065615 | Msa0878300:CDS |
| CCCCTAAAGGTTGAAACAAA+TGG | 0.456356 | 6_1:-19066056 | None:intergenic |
| AGTCAAAATGAGTGCTTTGT+GGG | 0.458332 | 6_1:-19067508 | None:intergenic |
| TGCAAGCATCATGTGATACT+TGG | 0.463779 | 6_1:+19066228 | Msa0878300:CDS |
| ATTTCATTGGATGGAAATTG+TGG | 0.466608 | 6_1:-19065434 | None:intergenic |
| TGCAACTGCACCATGCGCAT+TGG | 0.474036 | 6_1:-19067539 | None:intergenic |
| ATTGGTGCAACTTATAGACT+TGG | 0.485409 | 6_1:+19066271 | Msa0878300:CDS |
| TTTAGGTTGTGGAGTAATGA+TGG | 0.488119 | 6_1:+19065962 | Msa0878300:CDS |
| GAAATTGCATGGTCCATCCT+AGG | 0.493339 | 6_1:-19065893 | None:intergenic |
| TTCATCTCAATAGCATGTGC+TGG | 0.495444 | 6_1:+19065471 | Msa0878300:CDS |
| CCCTTTGCTTACATGTGCAA+TGG | 0.496721 | 6_1:+19065569 | Msa0878300:CDS |
| GGGTTTGAGAGGTAGAGATT+AGG | 0.500978 | 6_1:-19065413 | None:intergenic |
| TGACCTAGCAAATCCCCTAA+AGG | 0.513028 | 6_1:-19066069 | None:intergenic |
| TTTCATTGGATGGAAATTGT+GGG | 0.522682 | 6_1:-19065433 | None:intergenic |
| GCATCAATTCTTGTGAGTTG+TGG | 0.523891 | 6_1:+19066158 | Msa0878300:CDS |
| CACATTCTTAAGAAATTGCA+TGG | 0.527448 | 6_1:-19065904 | None:intergenic |
| CTTATAGACTTGGATCTCAC+TGG | 0.530964 | 6_1:+19066281 | Msa0878300:CDS |
| AAGTATATGAATTTAGGTTG+TGG | 0.531450 | 6_1:+19065951 | Msa0878300:CDS |
| GAGTCAAAATGAGTGCTTTG+TGG | 0.536742 | 6_1:-19067509 | None:intergenic |
| CAACCTTTAGGGGATTTGCT+AGG | 0.538750 | 6_1:+19066066 | Msa0878300:CDS |
| TGATTCAAGTCACAATTTCA+AGG | 0.542291 | 6_1:+19065925 | Msa0878300:CDS |
| GAGGGTACCATTTCATTGGA+TGG | 0.542842 | 6_1:-19065443 | None:intergenic |
| CTCCTTAGTGGAGTGGCTGG+GGG | 0.549201 | 6_1:+19066314 | Msa0878300:CDS |
| CCATTGCACATGTAAGCAAA+GGG | 0.550105 | 6_1:-19065569 | None:intergenic |
| GCCATTGCACATGTAAGCAA+AGG | 0.550947 | 6_1:-19065570 | None:intergenic |
| GATTCAAGTCACAATTTCAA+GGG | 0.576061 | 6_1:+19065926 | Msa0878300:CDS |
| CTCAACTATCCCAATGCGCA+TGG | 0.593055 | 6_1:+19067529 | Msa0878300:CDS |
| CTATTGAGATGAAGAGTGGA+GGG | 0.610256 | 6_1:-19065461 | None:intergenic |
| AAAGTGAAATTAGAAGCAAG+TGG | 0.610952 | 6_1:-19065365 | None:intergenic |
| CCATTTGTTTCAACCTTTAG+GGG | 0.619066 | 6_1:+19066056 | Msa0878300:CDS |
| AGATTAGGCCATAGATTGTG+AGG | 0.620407 | 6_1:-19065398 | None:intergenic |
| CATGCTATTGAGATGAAGAG+TGG | 0.626987 | 6_1:-19065465 | None:intergenic |
| ATGGAAATTGTGGGTTTGAG+AGG | 0.633454 | 6_1:-19065424 | None:intergenic |
| AGCAATAAAGAATTCCAATG+AGG | 0.636697 | 6_1:-19065782 | None:intergenic |
| GCTATTGAGATGAAGAGTGG+AGG | 0.638023 | 6_1:-19065462 | None:intergenic |
| TAAGCAGAAACACATGCTTG+TGG | 0.646760 | 6_1:-19067464 | None:intergenic |
| GCAAGCATCATGTGATACTT+GGG | 0.651754 | 6_1:+19066229 | Msa0878300:CDS |
| GCAGTTAGTAGCCTAGTGTG+TGG | 0.659768 | 6_1:+19066338 | Msa0878300:CDS |
| TGCTCCAAATTCCACACACT+AGG | 0.669628 | 6_1:-19066349 | None:intergenic |
| TTACCATAAAGTACCCAATG+AGG | 0.684583 | 6_1:-19066418 | None:intergenic |
| TGTCACCACAAACTCTACCA+AGG | 0.691496 | 6_1:+19064834 | Msa0878300:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTTTTGAAGAATAAAATT+AGG | - | chr6_1:19066718-19066737 | None:intergenic | 10.0% |
| !!! | CAAATTCATATATTTTAAAA+CGG | + | chr6_1:19067116-19067135 | Msa0878300:intron | 10.0% |
| !!! | AAATTCATATATTTTAAAAC+GGG | + | chr6_1:19067117-19067136 | Msa0878300:intron | 10.0% |
| !!! | AAATAAAAATTTGTTGATTT+TGG | + | chr6_1:19067193-19067212 | Msa0878300:intron | 10.0% |
| !! | AAAACTACATATAATGTAAA+AGG | - | chr6_1:19066689-19066708 | None:intergenic | 15.0% |
| !!! | ATTCCTAATTTTATTCAATA+TGG | + | chr6_1:19066741-19066760 | Msa0878300:intron | 15.0% |
| !! | AATTACTCAAAAAAAATAGA+AGG | - | chr6_1:19066776-19066795 | None:intergenic | 15.0% |
| !! | TAGAAGATTTAAAAAATTGA+GGG | - | chr6_1:19066831-19066850 | None:intergenic | 15.0% |
| !! | TTAGAAGATTTAAAAAATTG+AGG | - | chr6_1:19066832-19066851 | None:intergenic | 15.0% |
| !!! | AATTCATATATTTTAAAACG+GGG | + | chr6_1:19067118-19067137 | Msa0878300:intron | 15.0% |
| !!! | TTTGTTAAATTGAAGATTTT+TGG | - | chr6_1:19067146-19067165 | None:intergenic | 15.0% |
| !!! | ATATAAAGATATGTTACTTT+TGG | - | chr6_1:19067377-19067396 | None:intergenic | 15.0% |
| !! | ATAAAGTAAAATCTCATGTA+TGG | - | chr6_1:19064935-19064954 | None:intergenic | 20.0% |
| !! | TAGATATATAACAAATGCAA+TGG | - | chr6_1:19065224-19065243 | None:intergenic | 20.0% |
| !! | ATGTTGGAGTTTATAATAAA+GGG | + | chr6_1:19066201-19066220 | Msa0878300:CDS | 20.0% |
| !! | AAAATACCAATTAACTTCAT+CGG | + | chr6_1:19066507-19066526 | Msa0878300:intron | 20.0% |
| !! | TCTCCATATTGAATAAAATT+AGG | - | chr6_1:19066747-19066766 | None:intergenic | 20.0% |
| !!! | ATCCTTCCATTTTTATATTT+GGG | + | chr6_1:19066797-19066816 | Msa0878300:intron | 20.0% |
| !! | CAAAATCCCAAATATAAAAA+TGG | - | chr6_1:19066806-19066825 | None:intergenic | 20.0% |
| !!! | CATTTTTATATTTGGGATTT+TGG | + | chr6_1:19066804-19066823 | Msa0878300:intron | 20.0% |
| !! | AGAAGATTTAAAAAATTGAG+GGG | - | chr6_1:19066830-19066849 | None:intergenic | 20.0% |
| !! | ATTTCTATCTCAAAATTCAT+TGG | + | chr6_1:19067066-19067085 | Msa0878300:intron | 20.0% |
| !! | GAAAAAATGTCAAAAAATTG+TGG | + | chr6_1:19067091-19067110 | Msa0878300:intron | 20.0% |
| !!! | ATTCATATATTTTAAAACGG+GGG | + | chr6_1:19067119-19067138 | Msa0878300:intron | 20.0% |
| !! | TCTTCAATTTAACAAAATAG+TGG | + | chr6_1:19067150-19067169 | Msa0878300:intron | 20.0% |
| !! | TTTCTTTAACAATTTCATGT+GGG | - | chr6_1:19067354-19067373 | None:intergenic | 20.0% |
| !! | TATAGAGTTAAATATGTTTG+TGG | - | chr6_1:19067413-19067432 | None:intergenic | 20.0% |
| !!! | TTTAACTCTATATATTTTGC+AGG | + | chr6_1:19067421-19067440 | Msa0878300:intron | 20.0% |
| ! | TTTCTCATATTTCTCAAGTA+TGG | - | chr6_1:19064966-19064985 | None:intergenic | 25.0% |
| !!! | GATGCAATATATAGTTTTAG+AGG | - | chr6_1:19065036-19065055 | None:intergenic | 25.0% |
| ! | TTTGATATTGTTGAGAATTG+TGG | + | chr6_1:19065119-19065138 | Msa0878300:intron | 25.0% |
| ! | CAAATGCAATGGTTATATTA+GGG | - | chr6_1:19065213-19065232 | None:intergenic | 25.0% |
| ! | ACAAATGCAATGGTTATATT+AGG | - | chr6_1:19065214-19065233 | None:intergenic | 25.0% |
| !! | GATTTTTCTCACAATATTTC+CGG | - | chr6_1:19065325-19065344 | None:intergenic | 25.0% |
| !!! | TTGCTCTTAAAGCTTTTTTA+GGG | - | chr6_1:19065536-19065555 | None:intergenic | 25.0% |
| ! | TTCAATGTACACAAACATAA+TGG | - | chr6_1:19065595-19065614 | None:intergenic | 25.0% |
| !! | TGAAGTTGACAAAATTTTGT+TGG | - | chr6_1:19065712-19065731 | None:intergenic | 25.0% |
| !!! | TATTGCTTTTTTCTTGTGTT+TGG | + | chr6_1:19065798-19065817 | Msa0878300:CDS | 25.0% |
| !!! | TTTTTTCTTGTGTTTGGAAT+TGG | + | chr6_1:19065804-19065823 | Msa0878300:CDS | 25.0% |
| ! | CAAAATCACCAAAATGAATA+AGG | - | chr6_1:19065868-19065887 | None:intergenic | 25.0% |
| ! | AGGGTAAAGTATATGAATTT+AGG | + | chr6_1:19065945-19065964 | Msa0878300:CDS | 25.0% |
| !!! | AAGTATATGAATTTAGGTTG+TGG | + | chr6_1:19065951-19065970 | Msa0878300:CDS | 25.0% |
| ! | CATGTTGGAGTTTATAATAA+AGG | + | chr6_1:19066200-19066219 | Msa0878300:CDS | 25.0% |
| !! | ATACTTGGGACATTTTTAAT+AGG | + | chr6_1:19066243-19066262 | Msa0878300:CDS | 25.0% |
| !! | TACTTGGGACATTTTTAATA+GGG | + | chr6_1:19066244-19066263 | Msa0878300:CDS | 25.0% |
| ! | ATTTAAACCTCAAATTCCAT+CGG | - | chr6_1:19066574-19066593 | None:intergenic | 25.0% |
| !! | TCATTTCACACATTTAAGAT+TGG | + | chr6_1:19066651-19066670 | Msa0878300:intron | 25.0% |
| !! | CATTTCACACATTTAAGATT+GGG | + | chr6_1:19066652-19066671 | Msa0878300:intron | 25.0% |
| !!! | GATCCTTCCATTTTTATATT+TGG | + | chr6_1:19066796-19066815 | Msa0878300:intron | 25.0% |
| ! | ATCCCAAATATAAAAATGGA+AGG | - | chr6_1:19066802-19066821 | None:intergenic | 25.0% |
| !! | AAGTTATATGATGATGTGAA+AGG | - | chr6_1:19067033-19067052 | None:intergenic | 25.0% |
| ! | GTTTCTTTAACAATTTCATG+TGG | - | chr6_1:19067355-19067374 | None:intergenic | 25.0% |
| TTGTTCTTGACACATAAACA+AGG | - | chr6_1:19064907-19064926 | None:intergenic | 30.0% | |
| TTAAAAACCATGCCTATAAG+TGG | + | chr6_1:19065080-19065099 | Msa0878300:intron | 30.0% | |
| ! | TTGAGAATTGTGGAAGTATA+GGG | + | chr6_1:19065129-19065148 | Msa0878300:intron | 30.0% |
| TTTCTAAACCAAACACTAAC+CGG | + | chr6_1:19065303-19065322 | Msa0878300:CDS | 30.0% | |
| AAAGTGAAATTAGAAGCAAG+TGG | - | chr6_1:19065368-19065387 | None:intergenic | 30.0% | |
| ! | CTTGCTTCTAATTTCACTTT+TGG | + | chr6_1:19065368-19065387 | Msa0878300:CDS | 30.0% |
| GTAATTATCCTCACAATCTA+TGG | + | chr6_1:19065390-19065409 | Msa0878300:CDS | 30.0% | |
| TTTCATTGGATGGAAATTGT+GGG | - | chr6_1:19065436-19065455 | None:intergenic | 30.0% | |
| ATTTCATTGGATGGAAATTG+TGG | - | chr6_1:19065437-19065456 | None:intergenic | 30.0% | |
| ACAATTTCCATCCAATGAAA+TGG | + | chr6_1:19065436-19065455 | Msa0878300:CDS | 30.0% | |
| !!! | GTTGCTCTTAAAGCTTTTTT+AGG | - | chr6_1:19065537-19065556 | None:intergenic | 30.0% |
| !!! | AAGCTTTAAGAGCAACATTT+TGG | + | chr6_1:19065541-19065560 | Msa0878300:CDS | 30.0% |
| TCTCCAATAAGTCTTACAAT+AGG | + | chr6_1:19065615-19065634 | Msa0878300:CDS | 30.0% | |
| ACACCTATTGTAAGACTTAT+TGG | - | chr6_1:19065621-19065640 | None:intergenic | 30.0% | |
| !! | TACAATAGGTGTTATTGCTT+TGG | + | chr6_1:19065629-19065648 | Msa0878300:CDS | 30.0% |
| TTCAATCCCTTTATAGTTGT+TGG | + | chr6_1:19065664-19065683 | Msa0878300:CDS | 30.0% | |
| TCAATCCCTTTATAGTTGTT+GGG | + | chr6_1:19065665-19065684 | Msa0878300:CDS | 30.0% | |
| ! | ACATTTTCATCAATCCTCAT+TGG | + | chr6_1:19065768-19065787 | Msa0878300:CDS | 30.0% |
| AGCAATAAAGAATTCCAATG+AGG | - | chr6_1:19065785-19065804 | None:intergenic | 30.0% | |
| ! | GCTAACTTCCTTATTCATTT+TGG | + | chr6_1:19065857-19065876 | Msa0878300:CDS | 30.0% |
| CACATTCTTAAGAAATTGCA+TGG | - | chr6_1:19065907-19065926 | None:intergenic | 30.0% | |
| TGATTCAAGTCACAATTTCA+AGG | + | chr6_1:19065925-19065944 | Msa0878300:CDS | 30.0% | |
| GATTCAAGTCACAATTTCAA+GGG | + | chr6_1:19065926-19065945 | Msa0878300:CDS | 30.0% | |
| !! | TTCATTGGAAGTGTTTCAAT+TGG | + | chr6_1:19066020-19066039 | Msa0878300:CDS | 30.0% |
| TACCATTTGTTTCAACCTTT+AGG | + | chr6_1:19066054-19066073 | Msa0878300:CDS | 30.0% | |
| ACCATTTGTTTCAACCTTTA+GGG | + | chr6_1:19066055-19066074 | Msa0878300:CDS | 30.0% | |
| GCTAGGTCAATAAAAATTGT+TGG | + | chr6_1:19066083-19066102 | Msa0878300:CDS | 30.0% | |
| AGGTCAATAAAAATTGTTGG+AGG | + | chr6_1:19066086-19066105 | Msa0878300:CDS | 30.0% | |
| TTCTTGTGTTAGTTGCTATA+TGG | + | chr6_1:19066130-19066149 | Msa0878300:CDS | 30.0% | |
| TCTTGTGTTAGTTGCTATAT+GGG | + | chr6_1:19066131-19066150 | Msa0878300:CDS | 30.0% | |
| ! | CATTTTTAATAGGGTTGGAT+TGG | + | chr6_1:19066253-19066272 | Msa0878300:CDS | 30.0% |
| TAATTGCCGATGAAGTTAAT+TGG | - | chr6_1:19066516-19066535 | None:intergenic | 30.0% | |
| TAGTGTTTCTTAGCATTGTT+TGG | + | chr6_1:19066604-19066623 | Msa0878300:intron | 30.0% | |
| ! | ATTTTGCTCTCTTGTGAAAT+TGG | + | chr6_1:19066853-19066872 | Msa0878300:intron | 30.0% |
| ! | TTTTGCTCTCTTGTGAAATT+GGG | + | chr6_1:19066854-19066873 | Msa0878300:intron | 30.0% |
| TGTAAAACATTGCCAAAAAC+AGG | + | chr6_1:19066891-19066910 | Msa0878300:intron | 30.0% | |
| !! | CTTCAATTTTAGCCTGTTTT+TGG | - | chr6_1:19066906-19066925 | None:intergenic | 30.0% |
| CAGGCTAAAATTGAAGAAAT+AGG | + | chr6_1:19066910-19066929 | Msa0878300:intron | 30.0% | |
| TGAAGAAATAGGTGCATTAT+AGG | + | chr6_1:19066921-19066940 | Msa0878300:intron | 30.0% | |
| !!! | GCACTTAGTTTTGCATTTTA+AGG | + | chr6_1:19067322-19067341 | Msa0878300:intron | 30.0% |
| ! | ATATATTTTGCAGGTTCGAT+TGG | + | chr6_1:19067430-19067449 | Msa0878300:intron | 30.0% |
| TTGAGAGAGATACTATACCT+TGG | - | chr6_1:19064854-19064873 | None:intergenic | 35.0% | |
| ! | GTTGAGAATTGTGGAAGTAT+AGG | + | chr6_1:19065128-19065147 | Msa0878300:intron | 35.0% |
| AAAGTCCACAATTGCGATTT+CGG | - | chr6_1:19065183-19065202 | None:intergenic | 35.0% | |
| CAATATTTCCGGTTAGTGTT+TGG | - | chr6_1:19065314-19065333 | None:intergenic | 35.0% | |
| !!! | TTTTTGGTTTCACATGGCAA+TGG | + | chr6_1:19065496-19065515 | Msa0878300:CDS | 35.0% |
| ACTGACCCAACAACTATAAA+GGG | - | chr6_1:19065673-19065692 | None:intergenic | 35.0% | |
| ! | AACATCATCATGCTTTTGGA+AGG | - | chr6_1:19065747-19065766 | None:intergenic | 35.0% |
| ! | TGTCAACATCATCATGCTTT+TGG | - | chr6_1:19065751-19065770 | None:intergenic | 35.0% |
| ! | TTTCTTGTGTTTGGAATTGG+AGG | + | chr6_1:19065807-19065826 | Msa0878300:CDS | 35.0% |
| !! | TTTAGGTTGTGGAGTAATGA+TGG | + | chr6_1:19065962-19065981 | Msa0878300:CDS | 35.0% |
| !! | GACACTTTAAAGCACTTCAT+TGG | + | chr6_1:19066005-19066024 | Msa0878300:CDS | 35.0% |
| CCATTTGTTTCAACCTTTAG+GGG | + | chr6_1:19066056-19066075 | Msa0878300:CDS | 35.0% | |
| TTCTTGTGAGTTGTGGAAAT+AGG | + | chr6_1:19066165-19066184 | Msa0878300:CDS | 35.0% | |
| ! | TGGGACATTTTTAATAGGGT+TGG | + | chr6_1:19066248-19066267 | Msa0878300:CDS | 35.0% |
| ATTGGTGCAACTTATAGACT+TGG | + | chr6_1:19066271-19066290 | Msa0878300:CDS | 35.0% | |
| GCTACTGAATTGTCCATTTA+TGG | + | chr6_1:19066392-19066411 | Msa0878300:CDS | 35.0% | |
| TCCATTTATGGTTTCCTCAT+TGG | + | chr6_1:19066404-19066423 | Msa0878300:CDS | 35.0% | |
| CCATTTATGGTTTCCTCATT+GGG | + | chr6_1:19066405-19066424 | Msa0878300:CDS | 35.0% | |
| TTTCCTCATTGGGTACTTTA+TGG | + | chr6_1:19066415-19066434 | Msa0878300:CDS | 35.0% | |
| ! | TTACCATAAAGTACCCAATG+AGG | - | chr6_1:19066421-19066440 | None:intergenic | 35.0% |
| ! | ATTGTTGTTCCCACATCAAA+GGG | + | chr6_1:19066467-19066486 | Msa0878300:intron | 35.0% |
| ! | AACTGTCGATGGTTTTTAAC+CGG | + | chr6_1:19066535-19066554 | Msa0878300:intron | 35.0% |
| ! | AGGTGCATTATAGGTTTGTT+TGG | + | chr6_1:19066930-19066949 | Msa0878300:intron | 35.0% |
| ! | TGATGATGTGAACGTGATAT+TGG | - | chr6_1:19066985-19067004 | None:intergenic | 35.0% |
| TCTTAATGAGTGACTGATGA+AGG | - | chr6_1:19067296-19067315 | None:intergenic | 35.0% | |
| AGTCAAAATGAGTGCTTTGT+GGG | - | chr6_1:19067511-19067530 | None:intergenic | 35.0% | |
| CTATACCTTGGTAGAGTTTG+TGG | - | chr6_1:19064842-19064861 | None:intergenic | 40.0% | |
| GCATTCTACAATCGCAATTG+CGG | - | chr6_1:19065058-19065077 | None:intergenic | 40.0% | |
| ! | AAAATGCGACTGCCACTTAT+AGG | - | chr6_1:19065095-19065114 | None:intergenic | 40.0% |
| ! | CAACTTGTGTTTTCTTGTGC+AGG | + | chr6_1:19065266-19065285 | Msa0878300:intron | 40.0% |
| AGATTAGGCCATAGATTGTG+AGG | - | chr6_1:19065401-19065420 | None:intergenic | 40.0% | |
| ATGGAAATTGTGGGTTTGAG+AGG | - | chr6_1:19065427-19065446 | None:intergenic | 40.0% | |
| CTATTGAGATGAAGAGTGGA+GGG | - | chr6_1:19065464-19065483 | None:intergenic | 40.0% | |
| CATGCTATTGAGATGAAGAG+TGG | - | chr6_1:19065468-19065487 | None:intergenic | 40.0% | |
| TTCATCTCAATAGCATGTGC+TGG | + | chr6_1:19065471-19065490 | Msa0878300:CDS | 40.0% | |
| ! | ATAGCATGTGCTGGAGTTTT+TGG | + | chr6_1:19065480-19065499 | Msa0878300:CDS | 40.0% |
| !!! | CTGGAGTTTTTGGTTTCACA+TGG | + | chr6_1:19065490-19065509 | Msa0878300:CDS | 40.0% |
| CCATTGCACATGTAAGCAAA+GGG | - | chr6_1:19065572-19065591 | None:intergenic | 40.0% | |
| GACTGACCCAACAACTATAA+AGG | - | chr6_1:19065674-19065693 | None:intergenic | 40.0% | |
| !! | TTGGTGATTTTGTTGAGCCT+AGG | + | chr6_1:19065876-19065895 | Msa0878300:CDS | 40.0% |
| ! | TGATTTTGTTGAGCCTAGGA+TGG | + | chr6_1:19065880-19065899 | Msa0878300:CDS | 40.0% |
| CCCCTAAAGGTTGAAACAAA+TGG | - | chr6_1:19066059-19066078 | None:intergenic | 40.0% | |
| GCATCAATTCTTGTGAGTTG+TGG | + | chr6_1:19066158-19066177 | Msa0878300:CDS | 40.0% | |
| GTGAGTTGTGGAAATAGGTT+TGG | + | chr6_1:19066170-19066189 | Msa0878300:CDS | 40.0% | |
| !!! | AGGTTTGGTTTTGTGCATGT+TGG | + | chr6_1:19066185-19066204 | Msa0878300:CDS | 40.0% |
| TGCAAGCATCATGTGATACT+TGG | + | chr6_1:19066228-19066247 | Msa0878300:CDS | 40.0% | |
| GCAAGCATCATGTGATACTT+GGG | + | chr6_1:19066229-19066248 | Msa0878300:CDS | 40.0% | |
| CTTATAGACTTGGATCTCAC+TGG | + | chr6_1:19066281-19066300 | Msa0878300:CDS | 40.0% | |
| ! | GGATCATTTTGTCTCCTTAG+TGG | + | chr6_1:19066302-19066321 | Msa0878300:CDS | 40.0% |
| ! | ATTTTGTCTCCTTAGTGGAG+TGG | + | chr6_1:19066307-19066326 | Msa0878300:CDS | 40.0% |
| CCCAATGAGGAAACCATAAA+TGG | - | chr6_1:19066408-19066427 | None:intergenic | 40.0% | |
| ! | GATTGTTGTTCCCACATCAA+AGG | + | chr6_1:19066466-19066485 | Msa0878300:intron | 40.0% |
| TTCCTAACACCCTTTGATGT+GGG | - | chr6_1:19066479-19066498 | None:intergenic | 40.0% | |
| TTTCCTAACACCCTTTGATG+TGG | - | chr6_1:19066480-19066499 | None:intergenic | 40.0% | |
| !! | AAAGGGTGTTAGGAAACACT+AGG | + | chr6_1:19066484-19066503 | Msa0878300:intron | 40.0% |
| TAAACCTCAAATTCCATCGG+CGG | - | chr6_1:19066571-19066590 | None:intergenic | 40.0% | |
| TAAGCAGAAACACATGCTTG+TGG | - | chr6_1:19067467-19067486 | None:intergenic | 40.0% | |
| GAGTCAAAATGAGTGCTTTG+TGG | - | chr6_1:19067512-19067531 | None:intergenic | 40.0% | |
| TGTCACCACAAACTCTACCA+AGG | + | chr6_1:19064834-19064853 | Msa0878300:CDS | 45.0% | |
| ATGAGAAAATGTGACCGACG+CGG | + | chr6_1:19064978-19064997 | Msa0878300:intron | 45.0% | |
| GGGTTTGAGAGGTAGAGATT+AGG | - | chr6_1:19065416-19065435 | None:intergenic | 45.0% | |
| !! | GAGGGTACCATTTCATTGGA+TGG | - | chr6_1:19065446-19065465 | None:intergenic | 45.0% |
| !! | AGTGGAGGGTACCATTTCAT+TGG | - | chr6_1:19065450-19065469 | None:intergenic | 45.0% |
| GCTATTGAGATGAAGAGTGG+AGG | - | chr6_1:19065465-19065484 | None:intergenic | 45.0% | |
| CCCTTTGCTTACATGTGCAA+TGG | + | chr6_1:19065569-19065588 | Msa0878300:CDS | 45.0% | |
| GCCATTGCACATGTAAGCAA+AGG | - | chr6_1:19065573-19065592 | None:intergenic | 45.0% | |
| GAAATTGCATGGTCCATCCT+AGG | - | chr6_1:19065896-19065915 | None:intergenic | 45.0% | |
| ! | CAACCTTTAGGGGATTTGCT+AGG | + | chr6_1:19066066-19066085 | Msa0878300:CDS | 45.0% |
| TGACCTAGCAAATCCCCTAA+AGG | - | chr6_1:19066072-19066091 | None:intergenic | 45.0% | |
| GTAGCCTAGTGTGTGGAATT+TGG | + | chr6_1:19066345-19066364 | Msa0878300:CDS | 45.0% | |
| TGCTCCAAATTCCACACACT+AGG | - | chr6_1:19066352-19066371 | None:intergenic | 45.0% | |
| !! | TTCCCACATCAAAGGGTGTT+AGG | + | chr6_1:19066474-19066493 | Msa0878300:intron | 45.0% |
| CATCGGCAATTAACTGTCGA+TGG | + | chr6_1:19066524-19066543 | Msa0878300:intron | 45.0% | |
| ! | TGTCGATGGTTTTTAACCGG+CGG | + | chr6_1:19066538-19066557 | Msa0878300:intron | 45.0% |
| TTAACCGCCGATGGAATTTG+AGG | + | chr6_1:19066564-19066583 | Msa0878300:intron | 45.0% | |
| !! | TTTGCAGGTTCGATTGGCTT+TGG | + | chr6_1:19067436-19067455 | Msa0878300:intron | 45.0% |
| TTGCGATTTCGGCTGCGAAT+GGG | - | chr6_1:19065172-19065191 | None:intergenic | 50.0% | |
| ATTGCGATTTCGGCTGCGAA+TGG | - | chr6_1:19065173-19065192 | None:intergenic | 50.0% | |
| GCAGTTAGTAGCCTAGTGTG+TGG | + | chr6_1:19066338-19066357 | Msa0878300:CDS | 50.0% | |
| CTCAACTATCCCAATGCGCA+TGG | + | chr6_1:19067529-19067548 | Msa0878300:CDS | 50.0% | |
| TTGCGCAATTGTGACCGCGT+CGG | - | chr6_1:19064995-19065014 | None:intergenic | 55.0% | |
| ! | GCGACTGCCACTTATAGGCA+TGG | - | chr6_1:19065090-19065109 | None:intergenic | 55.0% |
| TGCGATTTCGGCTGCGAATG+GGG | - | chr6_1:19065171-19065190 | None:intergenic | 55.0% | |
| CGCAGCCGAAATCGCAATTG+TGG | + | chr6_1:19065175-19065194 | Msa0878300:intron | 55.0% | |
| TGTCTCCTTAGTGGAGTGGC+TGG | + | chr6_1:19066311-19066330 | Msa0878300:CDS | 55.0% | |
| GTCTCCTTAGTGGAGTGGCT+GGG | + | chr6_1:19066312-19066331 | Msa0878300:CDS | 55.0% | |
| TCTCCTTAGTGGAGTGGCTG+GGG | + | chr6_1:19066313-19066332 | Msa0878300:CDS | 55.0% | |
| GCAACTGCACCATGCGCATT+GGG | - | chr6_1:19067541-19067560 | None:intergenic | 55.0% | |
| TGCAACTGCACCATGCGCAT+TGG | - | chr6_1:19067542-19067561 | None:intergenic | 55.0% | |
| TCGGCTGCGAATGGGGATTG+AGG | - | chr6_1:19065164-19065183 | None:intergenic | 60.0% | |
| CTCCTTAGTGGAGTGGCTGG+GGG | + | chr6_1:19066314-19066333 | Msa0878300:CDS | 60.0% | |
| CACCCCCAGCCACTCCACTA+AGG | - | chr6_1:19066319-19066338 | None:intergenic | 65.0% | |
| CATCGGCGGTTAACTGCCGC+CGG | - | chr6_1:19066557-19066576 | None:intergenic | 65.0% | |
| CGGCGGCAGTTAACCGCCGA+TGG | + | chr6_1:19066555-19066574 | Msa0878300:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_1 | gene | 19064811 | 19067577 | 19064811 | ID=Msa0878300;Name=Msa0878300 |
| chr6_1 | mRNA | 19064811 | 19067577 | 19064811 | ID=Msa0878300-mRNA-1;Parent=Msa0878300;Name=Msa0878300-mRNA-1;_AED=0.02;_eAED=0.02;_QI=0|0|0|0.66|1|1|3|0|442 |
| chr6_1 | exon | 19064811 | 19064855 | 19064811 | ID=Msa0878300-mRNA-1:exon:5113;Parent=Msa0878300-mRNA-1 |
| chr6_1 | exon | 19065288 | 19066436 | 19065288 | ID=Msa0878300-mRNA-1:exon:5114;Parent=Msa0878300-mRNA-1 |
| chr6_1 | exon | 19067443 | 19067577 | 19067443 | ID=Msa0878300-mRNA-1:exon:5115;Parent=Msa0878300-mRNA-1 |
| chr6_1 | CDS | 19064811 | 19064855 | 19064811 | ID=Msa0878300-mRNA-1:cds;Parent=Msa0878300-mRNA-1 |
| chr6_1 | CDS | 19065288 | 19066436 | 19065288 | ID=Msa0878300-mRNA-1:cds;Parent=Msa0878300-mRNA-1 |
| chr6_1 | CDS | 19067443 | 19067577 | 19067443 | ID=Msa0878300-mRNA-1:cds;Parent=Msa0878300-mRNA-1 |
| Gene Sequence |
| Protein sequence |
