Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0944040 | sp|Q4I8E9|PNS1_GIBZE | 30.189 | 159 | 103 | 3 | 203 | 354 | 280 | 437 | 4.70e-12 | 71.6 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0944040 | A0A396HDR5 | 94.393 | 428 | 24 | 0 | 15 | 442 | 9 | 436 | 0.0 | 798 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0878300 | Msa0944040 | 0.967514 | 2.208671e-127 | -8.615850e-47 |
| Msa0944040 | Msa0980320 | 0.918981 | 7.951162e-87 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0944040 | MtrunA17_Chr6g0460811 | 94.393 | 428 | 24 | 0 | 15 | 442 | 9 | 436 | 0.0 | 798 |
| Msa0944040 | MtrunA17_Chr7g0254111 | 66.589 | 428 | 141 | 2 | 15 | 441 | 24 | 450 | 0.0 | 583 |
| Msa0944040 | MtrunA17_Chr3g0090051 | 32.126 | 414 | 268 | 5 | 33 | 438 | 152 | 560 | 1.17e-68 | 228 |
| Msa0944040 | MtrunA17_Chr5g0422761 | 23.920 | 301 | 214 | 6 | 132 | 421 | 149 | 445 | 4.00e-20 | 92.8 |
| Msa0944040 | MtrunA17_Chr1g0210161 | 24.252 | 301 | 213 | 6 | 132 | 421 | 155 | 451 | 1.02e-19 | 91.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0944040 | AT3G03700.1 | 51.319 | 417 | 198 | 4 | 23 | 438 | 45 | 457 | 2.06e-146 | 426 |
| Msa0944040 | AT3G04440.2 | 51.319 | 417 | 198 | 4 | 23 | 438 | 22 | 434 | 2.10e-146 | 425 |
| Msa0944040 | AT3G04440.1 | 51.559 | 417 | 197 | 4 | 23 | 438 | 45 | 457 | 4.27e-146 | 425 |
| Msa0944040 | AT5G17830.2 | 40.670 | 418 | 233 | 8 | 25 | 438 | 24 | 430 | 2.73e-100 | 307 |
| Msa0944040 | AT5G17830.1 | 40.670 | 418 | 233 | 8 | 25 | 438 | 45 | 451 | 5.43e-100 | 307 |
| Msa0944040 | AT5G13760.1 | 30.822 | 438 | 286 | 7 | 14 | 442 | 126 | 555 | 6.70e-65 | 218 |
| Msa0944040 | AT1G25500.3 | 24.324 | 296 | 210 | 6 | 137 | 421 | 102 | 394 | 2.29e-15 | 78.2 |
| Msa0944040 | AT1G25500.2 | 24.324 | 296 | 210 | 6 | 137 | 421 | 160 | 452 | 5.45e-15 | 77.4 |
| Msa0944040 | AT1G25500.1 | 24.074 | 270 | 191 | 6 | 137 | 395 | 34 | 300 | 1.49e-13 | 71.6 |
Find 82 sgRNAs with CRISPR-Local
Find 185 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCTACTGAATTGTCCATTTA+TGG | 0.064661 | 6_3:+20427238 | Msa0944040:CDS |
| TTTCCTCATTGGGTACTTTA+TGG | 0.147771 | 6_3:+20427261 | Msa0944040:CDS |
| GCTAACTTCCTTATTCATTT+TGG | 0.154021 | 6_3:+20426703 | Msa0944040:CDS |
| ACACCTATTGTAAGACTTAT+TGG | 0.168236 | 6_3:-20426464 | None:intergenic |
| ACCATTTGTTTCAACCTTTA+GGG | 0.222439 | 6_3:+20426901 | Msa0944040:CDS |
| TGTCAACATCATCATGCTTT+TGG | 0.230506 | 6_3:-20426594 | None:intergenic |
| AAGCTTTAAGAGCAACATTT+TGG | 0.236479 | 6_3:+20426387 | Msa0944040:CDS |
| TACCATTTGTTTCAACCTTT+AGG | 0.276772 | 6_3:+20426900 | Msa0944040:CDS |
| GTAATTATCCTCACAATCTA+TGG | 0.290297 | 6_3:+20426236 | Msa0944040:CDS |
| GTAGCCTAGTGTGTGGAATT+TGG | 0.290535 | 6_3:+20427191 | Msa0944040:CDS |
| CCATTTATGGTTTCCTCATT+GGG | 0.293802 | 6_3:+20427251 | Msa0944040:CDS |
| CTTGCTTCTAATTTCACTTT+TGG | 0.295934 | 6_3:+20426214 | Msa0944040:CDS |
| TTCAATCCCTTTATAGTTGT+TGG | 0.296085 | 6_3:+20426510 | Msa0944040:CDS |
| TTCTTGTGTTAGTTGCTATA+TGG | 0.298267 | 6_3:+20426976 | Msa0944040:CDS |
| CCCAATGAGGAAACCATAAA+TGG | 0.304813 | 6_3:-20427251 | None:intergenic |
| TACAATAGGTGTTATTGCTT+TGG | 0.307956 | 6_3:+20426475 | Msa0944040:CDS |
| GACTGACCCAACAACTATAA+AGG | 0.311474 | 6_3:-20426517 | None:intergenic |
| TCCATTTATGGTTTCCTCAT+TGG | 0.319191 | 6_3:+20427250 | Msa0944040:CDS |
| CATGTTGGAGTTTATAATAA+AGG | 0.330732 | 6_3:+20427046 | Msa0944040:CDS |
| CAAAATCACCAAAATGAATA+AGG | 0.335004 | 6_3:-20426711 | None:intergenic |
| TTCTTGTGAGTTGTGGAAAT+AGG | 0.337097 | 6_3:+20427011 | Msa0944040:CDS |
| TGTTTCCTTAGTGGAGTGGC+TGG | 0.342077 | 6_3:+20427157 | Msa0944040:CDS |
| AGGGTAAAGTATATGAATTT+AGG | 0.344465 | 6_3:+20426791 | Msa0944040:CDS |
| TCTTGTGTTAGTTGCTATAT+GGG | 0.346364 | 6_3:+20426977 | Msa0944040:CDS |
| GACACTTTAAAGCACTTCAT+TGG | 0.349658 | 6_3:+20426851 | Msa0944040:CDS |
| CAATATTTCCGGTTAGTGTT+TGG | 0.364426 | 6_3:-20426157 | None:intergenic |
| GTTTCCTTAGTGGAGTGGCT+GGG | 0.397305 | 6_3:+20427158 | Msa0944040:CDS |
| TTTCTTGTGTTTGGAATTGG+AGG | 0.403496 | 6_3:+20426653 | Msa0944040:CDS |
| CTATACCTTGGTAGAGTTTG+TGG | 0.406067 | 6_3:-20425716 | None:intergenic |
| TTCATTGGAAGTGTTTCAAT+TGG | 0.409381 | 6_3:+20426866 | Msa0944040:CDS |
| TCAATCCCTTTATAGTTGTT+GGG | 0.410200 | 6_3:+20426511 | Msa0944040:CDS |
| ATGTTGGAGTTTATAATAAA+GGG | 0.413420 | 6_3:+20427047 | Msa0944040:CDS |
| TTTCTAAACCAAACACTAAC+CGG | 0.416246 | 6_3:+20426149 | Msa0944040:CDS |
| AGTGGAGGGTACCATTTCAT+TGG | 0.419687 | 6_3:-20426293 | None:intergenic |
| GTGAGTTGTGGAAATAGGTT+TGG | 0.428707 | 6_3:+20427016 | Msa0944040:CDS |
| GCAACTGTTCCATACGCATT+GGG | 0.434805 | 6_3:-20428384 | None:intergenic |
| ACTGACCCAACAACTATAAA+GGG | 0.439021 | 6_3:-20426516 | None:intergenic |
| TTCAATGTACACAAACATAA+TGG | 0.439086 | 6_3:-20426438 | None:intergenic |
| ACAATTTCCATCCAATGAAA+TGG | 0.439986 | 6_3:+20426282 | Msa0944040:CDS |
| TTTCCTTAGTGGAGTGGCTG+GGG | 0.440707 | 6_3:+20427159 | Msa0944040:CDS |
| TCTCCAATAAGTCTTACAAT+AGG | 0.448899 | 6_3:+20426461 | Msa0944040:CDS |
| CCCCTAAAGGTTGAAACAAA+TGG | 0.456356 | 6_3:-20426902 | None:intergenic |
| AGTCAAAATGAGTGCTTTGT+GGG | 0.458332 | 6_3:-20428354 | None:intergenic |
| TGCAAGCATCATGTGATACT+TGG | 0.463779 | 6_3:+20427074 | Msa0944040:CDS |
| ATTTCATTGGATGGAAATTG+TGG | 0.466608 | 6_3:-20426280 | None:intergenic |
| TGCAACTGTTCCATACGCAT+TGG | 0.483863 | 6_3:-20428385 | None:intergenic |
| TTTAGGTTGTGGAGTAATGA+TGG | 0.488119 | 6_3:+20426808 | Msa0944040:CDS |
| TTTGGTGCAACTTATAGACT+TGG | 0.488204 | 6_3:+20427117 | Msa0944040:CDS |
| GAAATTGCATGGTCCATCCT+AGG | 0.493339 | 6_3:-20426739 | None:intergenic |
| TTCATCTCAATAGCATGTGC+TGG | 0.495444 | 6_3:+20426317 | Msa0944040:CDS |
| CCCTTTGCTTACATGTGCAA+TGG | 0.496721 | 6_3:+20426415 | Msa0944040:CDS |
| GGGTTTGAGAGGTAGAGATT+AGG | 0.500978 | 6_3:-20426259 | None:intergenic |
| TTTGCAGGTTCGATTGGCAT+TGG | 0.506596 | 6_3:+20428282 | Msa0944040:intron |
| TGACCTAGCAAATCCCCTAA+AGG | 0.513028 | 6_3:-20426915 | None:intergenic |
| CTCAACTATCCCAATGCGTA+TGG | 0.522405 | 6_3:+20428375 | Msa0944040:CDS |
| TTTCATTGGATGGAAATTGT+GGG | 0.522682 | 6_3:-20426279 | None:intergenic |
| GCATCAATTCTTGTGAGTTG+TGG | 0.523891 | 6_3:+20427004 | Msa0944040:CDS |
| CACATTCTTAAGAAATTGCA+TGG | 0.527448 | 6_3:-20426750 | None:intergenic |
| CTTATAGACTTGGATCTCAC+TGG | 0.530964 | 6_3:+20427127 | Msa0944040:CDS |
| AAGTATATGAATTTAGGTTG+TGG | 0.531450 | 6_3:+20426797 | Msa0944040:CDS |
| GAGTCAAAATGAGTGCTTTG+TGG | 0.536742 | 6_3:-20428355 | None:intergenic |
| CAACCTTTAGGGGATTTGCT+AGG | 0.538750 | 6_3:+20426912 | Msa0944040:CDS |
| TGATTCAAGTCACAATTTCA+AGG | 0.542291 | 6_3:+20426771 | Msa0944040:CDS |
| GAGGGTACCATTTCATTGGA+TGG | 0.542842 | 6_3:-20426289 | None:intergenic |
| TTCCTTAGTGGAGTGGCTGG+GGG | 0.548971 | 6_3:+20427160 | Msa0944040:CDS |
| CCATTGCACATGTAAGCAAA+GGG | 0.550105 | 6_3:-20426415 | None:intergenic |
| GCCATTGCACATGTAAGCAA+AGG | 0.550947 | 6_3:-20426416 | None:intergenic |
| GATTCAAGTCACAATTTCAA+GGG | 0.576061 | 6_3:+20426772 | Msa0944040:CDS |
| CTATTGAGATGAAGAGTGGA+GGG | 0.610256 | 6_3:-20426307 | None:intergenic |
| AAAGTGAAATTAGAAGCAAG+TGG | 0.610952 | 6_3:-20426211 | None:intergenic |
| CCATTTGTTTCAACCTTTAG+GGG | 0.619066 | 6_3:+20426902 | Msa0944040:CDS |
| AGATTAGGCCATAGATTGTG+AGG | 0.620407 | 6_3:-20426244 | None:intergenic |
| TAAGCAGAGACACATGCTTG+TGG | 0.623719 | 6_3:-20428310 | None:intergenic |
| CATGCTATTGAGATGAAGAG+TGG | 0.626987 | 6_3:-20426311 | None:intergenic |
| ATGGAAATTGTGGGTTTGAG+AGG | 0.633454 | 6_3:-20426270 | None:intergenic |
| AGCAATAAAGAATTCCAATG+AGG | 0.636697 | 6_3:-20426628 | None:intergenic |
| GCTATTGAGATGAAGAGTGG+AGG | 0.638023 | 6_3:-20426308 | None:intergenic |
| GCAAGCATCATGTGATACTT+GGG | 0.651754 | 6_3:+20427075 | Msa0944040:CDS |
| GCAGTTAGTAGCCTAGTGTG+TGG | 0.659768 | 6_3:+20427184 | Msa0944040:CDS |
| TGCTCCAAATTCCACACACT+AGG | 0.669628 | 6_3:-20427195 | None:intergenic |
| TTACCATAAAGTACCCAATG+AGG | 0.684583 | 6_3:-20427264 | None:intergenic |
| TGTCACCACAAACTCTACCA+AGG | 0.691496 | 6_3:+20425711 | Msa0944040:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTTTTGAAGAATAAAATT+AGG | - | chr6_3:20427564-20427583 | None:intergenic | 10.0% |
| !!! | CAAATTCATATATTTTAAAA+CGG | + | chr6_3:20427965-20427984 | Msa0944040:intron | 10.0% |
| !!! | AAATTCATATATTTTAAAAC+GGG | + | chr6_3:20427966-20427985 | Msa0944040:intron | 10.0% |
| !! | AAAACTACATATAATGTAAA+AGG | - | chr6_3:20427535-20427554 | None:intergenic | 15.0% |
| !!! | ATTCCTAATTTTATTCAATA+TGG | + | chr6_3:20427588-20427607 | Msa0944040:intron | 15.0% |
| !! | TTACTCAAAAAAAAAATAGA+AGG | - | chr6_3:20427623-20427642 | None:intergenic | 15.0% |
| !! | TAGAAGATTTAAAAAATTGA+GGG | - | chr6_3:20427680-20427699 | None:intergenic | 15.0% |
| !! | TTAGAAGATTTAAAAAATTG+AGG | - | chr6_3:20427681-20427700 | None:intergenic | 15.0% |
| !!! | AATTCATATATTTTAAAACG+GGG | + | chr6_3:20427967-20427986 | Msa0944040:intron | 15.0% |
| !!! | TTTGTTAAATTGAAGATTTT+TGG | - | chr6_3:20427995-20428014 | None:intergenic | 15.0% |
| !!! | ATATAAAGATATGTTACTTT+TGG | - | chr6_3:20428224-20428243 | None:intergenic | 15.0% |
| !! | TAGATATATAACAAATGCAA+TGG | - | chr6_3:20426070-20426089 | None:intergenic | 20.0% |
| !! | ATGTTGGAGTTTATAATAAA+GGG | + | chr6_3:20427047-20427066 | Msa0944040:CDS | 20.0% |
| !! | AAAATACCAATTAACTTCAT+CGG | + | chr6_3:20427353-20427372 | Msa0944040:intron | 20.0% |
| !!! | AGGTTTAAATTGTTATTTAC+TGG | + | chr6_3:20427430-20427449 | Msa0944040:intron | 20.0% |
| !! | TCTCCATATTGAATAAAATT+AGG | - | chr6_3:20427594-20427613 | None:intergenic | 20.0% |
| !!! | ATCCTTCCATTTTTATATTT+GGG | + | chr6_3:20427646-20427665 | Msa0944040:intron | 20.0% |
| !! | CAAAATCCCAAATATAAAAA+TGG | - | chr6_3:20427655-20427674 | None:intergenic | 20.0% |
| !!! | CATTTTTATATTTGGGATTT+TGG | + | chr6_3:20427653-20427672 | Msa0944040:intron | 20.0% |
| !! | AGAAGATTTAAAAAATTGAG+GGG | - | chr6_3:20427679-20427698 | None:intergenic | 20.0% |
| !! | ATTTCTATCTCAAAATTCAT+TGG | + | chr6_3:20427915-20427934 | Msa0944040:intron | 20.0% |
| !! | GAAAAAATGTCAAAAAATTG+TGG | + | chr6_3:20427940-20427959 | Msa0944040:intron | 20.0% |
| !!! | ATTCATATATTTTAAAACGG+GGG | + | chr6_3:20427968-20427987 | Msa0944040:intron | 20.0% |
| !! | TCTTCAATTTAACAAAATAG+TGG | + | chr6_3:20427999-20428018 | Msa0944040:intron | 20.0% |
| !! | TTTCTTTAACAATTTCATGT+GGG | - | chr6_3:20428201-20428220 | None:intergenic | 20.0% |
| !! | TATAGAGTTAAATATGTTTG+TGG | - | chr6_3:20428259-20428278 | None:intergenic | 20.0% |
| !!! | TTTAACTCTATATATTTTGC+AGG | + | chr6_3:20428267-20428286 | Msa0944040:intron | 20.0% |
| ! | TTTCTCATATTTCTCATGTA+TGG | - | chr6_3:20425812-20425831 | None:intergenic | 25.0% |
| ! | CAAATGCAATGGTTATATTA+GGG | - | chr6_3:20426059-20426078 | None:intergenic | 25.0% |
| ! | ACAAATGCAATGGTTATATT+AGG | - | chr6_3:20426060-20426079 | None:intergenic | 25.0% |
| !! | GATTTTTCTCACAATATTTC+CGG | - | chr6_3:20426171-20426190 | None:intergenic | 25.0% |
| !!! | TTGCTCTTAAAGCTTTTTTA+GGG | - | chr6_3:20426382-20426401 | None:intergenic | 25.0% |
| ! | TTCAATGTACACAAACATAA+TGG | - | chr6_3:20426441-20426460 | None:intergenic | 25.0% |
| !! | TGAAGTTGACAAAATTTTGT+TGG | - | chr6_3:20426558-20426577 | None:intergenic | 25.0% |
| !!! | TATTGCTTTTTTCTTGTGTT+TGG | + | chr6_3:20426644-20426663 | Msa0944040:CDS | 25.0% |
| !!! | TTTTTTCTTGTGTTTGGAAT+TGG | + | chr6_3:20426650-20426669 | Msa0944040:CDS | 25.0% |
| ! | CAAAATCACCAAAATGAATA+AGG | - | chr6_3:20426714-20426733 | None:intergenic | 25.0% |
| ! | AGGGTAAAGTATATGAATTT+AGG | + | chr6_3:20426791-20426810 | Msa0944040:CDS | 25.0% |
| !!! | AAGTATATGAATTTAGGTTG+TGG | + | chr6_3:20426797-20426816 | Msa0944040:CDS | 25.0% |
| ! | AGGTCAATAAAAATTGTTGA+AGG | + | chr6_3:20426932-20426951 | Msa0944040:CDS | 25.0% |
| ! | CATGTTGGAGTTTATAATAA+AGG | + | chr6_3:20427046-20427065 | Msa0944040:CDS | 25.0% |
| !! | ATACTTGGGACATTTTTAAT+AGG | + | chr6_3:20427089-20427108 | Msa0944040:CDS | 25.0% |
| !! | TACTTGGGACATTTTTAATA+GGG | + | chr6_3:20427090-20427109 | Msa0944040:CDS | 25.0% |
| ! | ATTTAAACCTCAAATTCCAT+CGG | - | chr6_3:20427420-20427439 | None:intergenic | 25.0% |
| ! | TTAAATGTGTGAAATGAAAG+AGG | - | chr6_3:20427494-20427513 | None:intergenic | 25.0% |
| !! | TCATTTCACACATTTAAGAT+TGG | + | chr6_3:20427497-20427516 | Msa0944040:intron | 25.0% |
| !! | CATTTCACACATTTAAGATT+GGG | + | chr6_3:20427498-20427517 | Msa0944040:intron | 25.0% |
| !!! | GATCCTTCCATTTTTATATT+TGG | + | chr6_3:20427645-20427664 | Msa0944040:intron | 25.0% |
| ! | ATCCCAAATATAAAAATGGA+AGG | - | chr6_3:20427651-20427670 | None:intergenic | 25.0% |
| !! | AAGTTATATGATGATGTGAA+AGG | - | chr6_3:20427882-20427901 | None:intergenic | 25.0% |
| ! | GTTTCTTTAACAATTTCATG+TGG | - | chr6_3:20428202-20428221 | None:intergenic | 25.0% |
| TTGTTCTTGACACATAAACA+AGG | - | chr6_3:20425784-20425803 | None:intergenic | 30.0% | |
| !! | GCTGCAATATAAAGTTTTAG+AGG | - | chr6_3:20425882-20425901 | None:intergenic | 30.0% |
| TTAAAAACCATGCCTATAAG+TGG | + | chr6_3:20425926-20425945 | Msa0944040:intron | 30.0% | |
| TTTGATATTGTCGAGAATTG+TGG | + | chr6_3:20425965-20425984 | Msa0944040:intron | 30.0% | |
| TTTCTAAACCAAACACTAAC+CGG | + | chr6_3:20426149-20426168 | Msa0944040:CDS | 30.0% | |
| AAAGTGAAATTAGAAGCAAG+TGG | - | chr6_3:20426214-20426233 | None:intergenic | 30.0% | |
| ! | CTTGCTTCTAATTTCACTTT+TGG | + | chr6_3:20426214-20426233 | Msa0944040:CDS | 30.0% |
| GTAATTATCCTCACAATCTA+TGG | + | chr6_3:20426236-20426255 | Msa0944040:CDS | 30.0% | |
| TTTCATTGGATGGAAATTGT+GGG | - | chr6_3:20426282-20426301 | None:intergenic | 30.0% | |
| ATTTCATTGGATGGAAATTG+TGG | - | chr6_3:20426283-20426302 | None:intergenic | 30.0% | |
| ACAATTTCCATCCAATGAAA+TGG | + | chr6_3:20426282-20426301 | Msa0944040:CDS | 30.0% | |
| !!! | GTTGCTCTTAAAGCTTTTTT+AGG | - | chr6_3:20426383-20426402 | None:intergenic | 30.0% |
| !!! | AAGCTTTAAGAGCAACATTT+TGG | + | chr6_3:20426387-20426406 | Msa0944040:CDS | 30.0% |
| TCTCCAATAAGTCTTACAAT+AGG | + | chr6_3:20426461-20426480 | Msa0944040:CDS | 30.0% | |
| ACACCTATTGTAAGACTTAT+TGG | - | chr6_3:20426467-20426486 | None:intergenic | 30.0% | |
| !! | TACAATAGGTGTTATTGCTT+TGG | + | chr6_3:20426475-20426494 | Msa0944040:CDS | 30.0% |
| TTCAATCCCTTTATAGTTGT+TGG | + | chr6_3:20426510-20426529 | Msa0944040:CDS | 30.0% | |
| TCAATCCCTTTATAGTTGTT+GGG | + | chr6_3:20426511-20426530 | Msa0944040:CDS | 30.0% | |
| ! | ACATTTTCATCAATCCTCAT+TGG | + | chr6_3:20426614-20426633 | Msa0944040:CDS | 30.0% |
| AGCAATAAAGAATTCCAATG+AGG | - | chr6_3:20426631-20426650 | None:intergenic | 30.0% | |
| ! | GCTAACTTCCTTATTCATTT+TGG | + | chr6_3:20426703-20426722 | Msa0944040:CDS | 30.0% |
| CACATTCTTAAGAAATTGCA+TGG | - | chr6_3:20426753-20426772 | None:intergenic | 30.0% | |
| TGATTCAAGTCACAATTTCA+AGG | + | chr6_3:20426771-20426790 | Msa0944040:CDS | 30.0% | |
| GATTCAAGTCACAATTTCAA+GGG | + | chr6_3:20426772-20426791 | Msa0944040:CDS | 30.0% | |
| !! | TTCATTGGAAGTGTTTCAAT+TGG | + | chr6_3:20426866-20426885 | Msa0944040:CDS | 30.0% |
| TACCATTTGTTTCAACCTTT+AGG | + | chr6_3:20426900-20426919 | Msa0944040:CDS | 30.0% | |
| ACCATTTGTTTCAACCTTTA+GGG | + | chr6_3:20426901-20426920 | Msa0944040:CDS | 30.0% | |
| TTCTTGTGTTAGTTGCTATA+TGG | + | chr6_3:20426976-20426995 | Msa0944040:CDS | 30.0% | |
| TCTTGTGTTAGTTGCTATAT+GGG | + | chr6_3:20426977-20426996 | Msa0944040:CDS | 30.0% | |
| !!! | CATTTTTAATAGGGTTGGTT+TGG | + | chr6_3:20427099-20427118 | Msa0944040:CDS | 30.0% |
| TAATTGCCGATGAAGTTAAT+TGG | - | chr6_3:20427362-20427381 | None:intergenic | 30.0% | |
| ! | ATTTTGCTCTCTTGTGAAAT+TGG | + | chr6_3:20427702-20427721 | Msa0944040:intron | 30.0% |
| ! | TTTTGCTCTCTTGTGAAATT+GGG | + | chr6_3:20427703-20427722 | Msa0944040:intron | 30.0% |
| TGTAAAACATTGCCAAAAAC+AGG | + | chr6_3:20427740-20427759 | Msa0944040:intron | 30.0% | |
| !! | CTTCAATTTTAGCCTGTTTT+TGG | - | chr6_3:20427755-20427774 | None:intergenic | 30.0% |
| CAGGCTAAAATTGAAGAAAT+AGG | + | chr6_3:20427759-20427778 | Msa0944040:intron | 30.0% | |
| TGAAGAAATAGGTGCATTAT+AGG | + | chr6_3:20427770-20427789 | Msa0944040:intron | 30.0% | |
| !!! | GCACTTAGTTTTGCATTTTA+AGG | + | chr6_3:20428169-20428188 | Msa0944040:intron | 30.0% |
| ! | ATATATTTTGCAGGTTCGAT+TGG | + | chr6_3:20428276-20428295 | Msa0944040:intron | 30.0% |
| TTGAGAGAGATACTATACCT+TGG | - | chr6_3:20425731-20425750 | None:intergenic | 35.0% | |
| ! | TCGAGAATTGTGGAAGTATA+GGG | + | chr6_3:20425975-20425994 | Msa0944040:intron | 35.0% |
| CAATATTTCCGGTTAGTGTT+TGG | - | chr6_3:20426160-20426179 | None:intergenic | 35.0% | |
| !!! | TTTTTGGTTTCACATGGCAA+TGG | + | chr6_3:20426342-20426361 | Msa0944040:CDS | 35.0% |
| ACTGACCCAACAACTATAAA+GGG | - | chr6_3:20426519-20426538 | None:intergenic | 35.0% | |
| ! | AACATCATCATGCTTTTGGA+AGG | - | chr6_3:20426593-20426612 | None:intergenic | 35.0% |
| ! | TGTCAACATCATCATGCTTT+TGG | - | chr6_3:20426597-20426616 | None:intergenic | 35.0% |
| ! | TTTCTTGTGTTTGGAATTGG+AGG | + | chr6_3:20426653-20426672 | Msa0944040:CDS | 35.0% |
| !! | TTTAGGTTGTGGAGTAATGA+TGG | + | chr6_3:20426808-20426827 | Msa0944040:CDS | 35.0% |
| !! | GACACTTTAAAGCACTTCAT+TGG | + | chr6_3:20426851-20426870 | Msa0944040:CDS | 35.0% |
| CCATTTGTTTCAACCTTTAG+GGG | + | chr6_3:20426902-20426921 | Msa0944040:CDS | 35.0% | |
| TTCTTGTGAGTTGTGGAAAT+AGG | + | chr6_3:20427011-20427030 | Msa0944040:CDS | 35.0% | |
| ! | TGGGACATTTTTAATAGGGT+TGG | + | chr6_3:20427094-20427113 | Msa0944040:CDS | 35.0% |
| ! | TTTGGTGCAACTTATAGACT+TGG | + | chr6_3:20427117-20427136 | Msa0944040:CDS | 35.0% |
| !! | GGATCATTTTGTTTCCTTAG+TGG | + | chr6_3:20427148-20427167 | Msa0944040:CDS | 35.0% |
| !! | ATTTTGTTTCCTTAGTGGAG+TGG | + | chr6_3:20427153-20427172 | Msa0944040:CDS | 35.0% |
| GCTACTGAATTGTCCATTTA+TGG | + | chr6_3:20427238-20427257 | Msa0944040:CDS | 35.0% | |
| TCCATTTATGGTTTCCTCAT+TGG | + | chr6_3:20427250-20427269 | Msa0944040:CDS | 35.0% | |
| CCATTTATGGTTTCCTCATT+GGG | + | chr6_3:20427251-20427270 | Msa0944040:CDS | 35.0% | |
| TTTCCTCATTGGGTACTTTA+TGG | + | chr6_3:20427261-20427280 | Msa0944040:CDS | 35.0% | |
| ! | TTACCATAAAGTACCCAATG+AGG | - | chr6_3:20427267-20427286 | None:intergenic | 35.0% |
| !! | AAAGGGTGTTATGAAACACT+AGG | + | chr6_3:20427330-20427349 | Msa0944040:intron | 35.0% |
| TGGTGTTTCTTAGCATTGTT+TGG | + | chr6_3:20427450-20427469 | Msa0944040:intron | 35.0% | |
| ! | AGGTGCATTATAGGTTTGTT+TGG | + | chr6_3:20427779-20427798 | Msa0944040:intron | 35.0% |
| ! | TGATGATGTGAACGTGATAT+TGG | - | chr6_3:20427834-20427853 | None:intergenic | 35.0% |
| TCTTAATGAGTGACTGATGA+AGG | - | chr6_3:20428143-20428162 | None:intergenic | 35.0% | |
| AGTCAAAATGAGTGCTTTGT+GGG | - | chr6_3:20428357-20428376 | None:intergenic | 35.0% | |
| CTATACCTTGGTAGAGTTTG+TGG | - | chr6_3:20425719-20425738 | None:intergenic | 40.0% | |
| AACAAGGATGCAACACAAGA+TGG | - | chr6_3:20425768-20425787 | None:intergenic | 40.0% | |
| ATGAGAAAATGTGACCGATG+TGG | + | chr6_3:20425824-20425843 | Msa0944040:intron | 40.0% | |
| GCATTCTACAATCGCAATTG+CGG | - | chr6_3:20425904-20425923 | None:intergenic | 40.0% | |
| ! | AAAATGCGACTGCCACTTAT+AGG | - | chr6_3:20425941-20425960 | None:intergenic | 40.0% |
| ! | GTCGAGAATTGTGGAAGTAT+AGG | + | chr6_3:20425974-20425993 | Msa0944040:intron | 40.0% |
| AAAGTCCACAACTGCGATTT+CGG | - | chr6_3:20426029-20426048 | None:intergenic | 40.0% | |
| ! | CAACTTGTGTTTTCTTGTGC+AGG | + | chr6_3:20426112-20426131 | Msa0944040:intron | 40.0% |
| AGATTAGGCCATAGATTGTG+AGG | - | chr6_3:20426247-20426266 | None:intergenic | 40.0% | |
| ATGGAAATTGTGGGTTTGAG+AGG | - | chr6_3:20426273-20426292 | None:intergenic | 40.0% | |
| CTATTGAGATGAAGAGTGGA+GGG | - | chr6_3:20426310-20426329 | None:intergenic | 40.0% | |
| CATGCTATTGAGATGAAGAG+TGG | - | chr6_3:20426314-20426333 | None:intergenic | 40.0% | |
| TTCATCTCAATAGCATGTGC+TGG | + | chr6_3:20426317-20426336 | Msa0944040:CDS | 40.0% | |
| ! | ATAGCATGTGCTGGAGTTTT+TGG | + | chr6_3:20426326-20426345 | Msa0944040:CDS | 40.0% |
| !!! | CTGGAGTTTTTGGTTTCACA+TGG | + | chr6_3:20426336-20426355 | Msa0944040:CDS | 40.0% |
| CCATTGCACATGTAAGCAAA+GGG | - | chr6_3:20426418-20426437 | None:intergenic | 40.0% | |
| GACTGACCCAACAACTATAA+AGG | - | chr6_3:20426520-20426539 | None:intergenic | 40.0% | |
| !! | TTGGTGATTTTGTTGAGCCT+AGG | + | chr6_3:20426722-20426741 | Msa0944040:CDS | 40.0% |
| ! | TGATTTTGTTGAGCCTAGGA+TGG | + | chr6_3:20426726-20426745 | Msa0944040:CDS | 40.0% |
| CCCCTAAAGGTTGAAACAAA+TGG | - | chr6_3:20426905-20426924 | None:intergenic | 40.0% | |
| GCATCAATTCTTGTGAGTTG+TGG | + | chr6_3:20427004-20427023 | Msa0944040:CDS | 40.0% | |
| GTGAGTTGTGGAAATAGGTT+TGG | + | chr6_3:20427016-20427035 | Msa0944040:CDS | 40.0% | |
| !!! | AGGTTTGGTTTTGTGCATGT+TGG | + | chr6_3:20427031-20427050 | Msa0944040:CDS | 40.0% |
| TGCAAGCATCATGTGATACT+TGG | + | chr6_3:20427074-20427093 | Msa0944040:CDS | 40.0% | |
| GCAAGCATCATGTGATACTT+GGG | + | chr6_3:20427075-20427094 | Msa0944040:CDS | 40.0% | |
| CTTATAGACTTGGATCTCAC+TGG | + | chr6_3:20427127-20427146 | Msa0944040:CDS | 40.0% | |
| CCCAATGAGGAAACCATAAA+TGG | - | chr6_3:20427254-20427273 | None:intergenic | 40.0% | |
| ! | ATTGTTGTTCCCACGTCAAA+GGG | + | chr6_3:20427313-20427332 | Msa0944040:intron | 40.0% |
| TTCATAACACCCTTTGACGT+GGG | - | chr6_3:20427325-20427344 | None:intergenic | 40.0% | |
| TTTCATAACACCCTTTGACG+TGG | - | chr6_3:20427326-20427345 | None:intergenic | 40.0% | |
| CATCGGCAATTAATTGTCGA+TGG | + | chr6_3:20427370-20427389 | Msa0944040:intron | 40.0% | |
| ! | TGTCGATGGTTTTTAACCGA+TGG | + | chr6_3:20427384-20427403 | Msa0944040:intron | 40.0% |
| TAAACCTCAAATTCCATCGG+CGG | - | chr6_3:20427417-20427436 | None:intergenic | 40.0% | |
| GAGTCAAAATGAGTGCTTTG+TGG | - | chr6_3:20428358-20428377 | None:intergenic | 40.0% | |
| TGTCACCACAAACTCTACCA+AGG | + | chr6_3:20425711-20425730 | Msa0944040:CDS | 45.0% | |
| TTGCGCAATTGTGACCACAT+CGG | - | chr6_3:20425841-20425860 | None:intergenic | 45.0% | |
| GGGTTTGAGAGGTAGAGATT+AGG | - | chr6_3:20426262-20426281 | None:intergenic | 45.0% | |
| !! | GAGGGTACCATTTCATTGGA+TGG | - | chr6_3:20426292-20426311 | None:intergenic | 45.0% |
| !! | AGTGGAGGGTACCATTTCAT+TGG | - | chr6_3:20426296-20426315 | None:intergenic | 45.0% |
| GCTATTGAGATGAAGAGTGG+AGG | - | chr6_3:20426311-20426330 | None:intergenic | 45.0% | |
| CCCTTTGCTTACATGTGCAA+TGG | + | chr6_3:20426415-20426434 | Msa0944040:CDS | 45.0% | |
| GCCATTGCACATGTAAGCAA+AGG | - | chr6_3:20426419-20426438 | None:intergenic | 45.0% | |
| GAAATTGCATGGTCCATCCT+AGG | - | chr6_3:20426742-20426761 | None:intergenic | 45.0% | |
| ! | CAACCTTTAGGGGATTTGCT+AGG | + | chr6_3:20426912-20426931 | Msa0944040:CDS | 45.0% |
| TGACCTAGCAAATCCCCTAA+AGG | - | chr6_3:20426918-20426937 | None:intergenic | 45.0% | |
| GTAGCCTAGTGTGTGGAATT+TGG | + | chr6_3:20427191-20427210 | Msa0944040:CDS | 45.0% | |
| TGCTCCAAATTCCACACACT+AGG | - | chr6_3:20427198-20427217 | None:intergenic | 45.0% | |
| ! | GATTGTTGTTCCCACGTCAA+AGG | + | chr6_3:20427312-20427331 | Msa0944040:intron | 45.0% |
| TTAACCGCCGATGGAATTTG+AGG | + | chr6_3:20427410-20427429 | Msa0944040:intron | 45.0% | |
| TTTGCAGGTTCGATTGGCAT+TGG | + | chr6_3:20428282-20428301 | Msa0944040:intron | 45.0% | |
| TAAGCAGAGACACATGCTTG+TGG | - | chr6_3:20428313-20428332 | None:intergenic | 45.0% | |
| CTCAACTATCCCAATGCGTA+TGG | + | chr6_3:20428375-20428394 | Msa0944040:CDS | 45.0% | |
| GCAACTGTTCCATACGCATT+GGG | - | chr6_3:20428387-20428406 | None:intergenic | 45.0% | |
| TGCAACTGTTCCATACGCAT+TGG | - | chr6_3:20428388-20428407 | None:intergenic | 45.0% | |
| TGTTTCCTTAGTGGAGTGGC+TGG | + | chr6_3:20427157-20427176 | Msa0944040:CDS | 50.0% | |
| GTTTCCTTAGTGGAGTGGCT+GGG | + | chr6_3:20427158-20427177 | Msa0944040:CDS | 50.0% | |
| TTTCCTTAGTGGAGTGGCTG+GGG | + | chr6_3:20427159-20427178 | Msa0944040:CDS | 50.0% | |
| GCAGTTAGTAGCCTAGTGTG+TGG | + | chr6_3:20427184-20427203 | Msa0944040:CDS | 50.0% | |
| ! | GCGACTGCCACTTATAGGCA+TGG | - | chr6_3:20425936-20425955 | None:intergenic | 55.0% |
| TGCGATTTCGGCTGCGAATG+GGG | - | chr6_3:20426017-20426036 | None:intergenic | 55.0% | |
| CTGCGATTTCGGCTGCGAAT+GGG | - | chr6_3:20426018-20426037 | None:intergenic | 55.0% | |
| ACTGCGATTTCGGCTGCGAA+TGG | - | chr6_3:20426019-20426038 | None:intergenic | 55.0% | |
| TTCCTTAGTGGAGTGGCTGG+GGG | + | chr6_3:20427160-20427179 | Msa0944040:CDS | 55.0% | |
| CATCGGCGGTTAACTGCCAT+CGG | - | chr6_3:20427403-20427422 | None:intergenic | 55.0% | |
| TCGGCTGCGAATGGGGATTG+AGG | - | chr6_3:20426010-20426029 | None:intergenic | 60.0% | |
| CGCAGCCGAAATCGCAGTTG+TGG | + | chr6_3:20426021-20426040 | Msa0944040:intron | 60.0% | |
| CGATGGCAGTTAACCGCCGA+TGG | + | chr6_3:20427401-20427420 | Msa0944040:intron | 60.0% | |
| CACCCCCAGCCACTCCACTA+AGG | - | chr6_3:20427165-20427184 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_3 | gene | 20425688 | 20428423 | 20425688 | ID=Msa0944040;Name=Msa0944040 |
| chr6_3 | mRNA | 20425688 | 20428423 | 20425688 | ID=Msa0944040-mRNA-1;Parent=Msa0944040;Name=Msa0944040-mRNA-1;_AED=0.02;_eAED=0.02;_QI=0|0|0|0.66|1|1|3|0|442 |
| chr6_3 | exon | 20425688 | 20425732 | 20425688 | ID=Msa0944040-mRNA-1:exon:6059;Parent=Msa0944040-mRNA-1 |
| chr6_3 | exon | 20426134 | 20427282 | 20426134 | ID=Msa0944040-mRNA-1:exon:6060;Parent=Msa0944040-mRNA-1 |
| chr6_3 | exon | 20428289 | 20428423 | 20428289 | ID=Msa0944040-mRNA-1:exon:6061;Parent=Msa0944040-mRNA-1 |
| chr6_3 | CDS | 20425688 | 20425732 | 20425688 | ID=Msa0944040-mRNA-1:cds;Parent=Msa0944040-mRNA-1 |
| chr6_3 | CDS | 20426134 | 20427282 | 20426134 | ID=Msa0944040-mRNA-1:cds;Parent=Msa0944040-mRNA-1 |
| chr6_3 | CDS | 20428289 | 20428423 | 20428289 | ID=Msa0944040-mRNA-1:cds;Parent=Msa0944040-mRNA-1 |
| Gene Sequence |
| Protein sequence |
