Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0980320 | XP_024641634.1 | 94.344 | 442 | 25 | 0 | 1 | 442 | 1 | 442 | 0.0 | 824 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0980320 | sp|Q4I8E9|PNS1_GIBZE | 25.000 | 304 | 196 | 9 | 76 | 354 | 141 | 437 | 4.92e-11 | 68.2 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0980320 | A0A396HDR5 | 93.925 | 428 | 26 | 0 | 15 | 442 | 9 | 436 | 0.0 | 795 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0669200 | Msa0980320 | 0.803712 | 3.057721e-49 | -8.615850e-47 |
| Msa0714340 | Msa0980320 | 0.806027 | 1.004255e-49 | -8.615850e-47 |
| Msa0878300 | Msa0980320 | 0.917007 | 8.966169e-86 | -8.615850e-47 |
| Msa0944040 | Msa0980320 | 0.918981 | 7.951162e-87 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0980320 | MtrunA17_Chr6g0460811 | 93.925 | 428 | 26 | 0 | 15 | 442 | 9 | 436 | 0.0 | 795 |
| Msa0980320 | MtrunA17_Chr7g0254111 | 66.589 | 428 | 141 | 2 | 15 | 441 | 24 | 450 | 0.0 | 583 |
| Msa0980320 | MtrunA17_Chr3g0090051 | 31.884 | 414 | 269 | 5 | 33 | 438 | 152 | 560 | 2.07e-67 | 225 |
| Msa0980320 | MtrunA17_Chr5g0422761 | 23.920 | 301 | 214 | 6 | 132 | 421 | 149 | 445 | 1.86e-19 | 90.5 |
| Msa0980320 | MtrunA17_Chr1g0210161 | 24.252 | 301 | 213 | 6 | 132 | 421 | 155 | 451 | 3.93e-19 | 89.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0980320 | AT3G04440.2 | 51.079 | 417 | 199 | 4 | 23 | 438 | 22 | 434 | 2.36e-145 | 422 |
| Msa0980320 | AT3G03700.1 | 51.079 | 417 | 199 | 4 | 23 | 438 | 45 | 457 | 2.89e-145 | 423 |
| Msa0980320 | AT3G04440.1 | 51.079 | 417 | 199 | 4 | 23 | 438 | 45 | 457 | 3.48e-145 | 423 |
| Msa0980320 | AT5G17830.2 | 40.431 | 418 | 234 | 8 | 25 | 438 | 24 | 430 | 2.84e-99 | 305 |
| Msa0980320 | AT5G17830.1 | 40.431 | 418 | 234 | 8 | 25 | 438 | 45 | 451 | 5.21e-99 | 305 |
| Msa0980320 | AT5G13760.1 | 30.822 | 438 | 286 | 7 | 14 | 442 | 126 | 555 | 4.94e-64 | 216 |
| Msa0980320 | AT1G25500.3 | 25.168 | 298 | 205 | 7 | 137 | 421 | 102 | 394 | 1.28e-15 | 79.0 |
| Msa0980320 | AT1G25500.2 | 25.168 | 298 | 205 | 7 | 137 | 421 | 160 | 452 | 2.64e-15 | 78.2 |
| Msa0980320 | AT1G25500.1 | 25.483 | 259 | 175 | 7 | 137 | 382 | 34 | 287 | 6.70e-14 | 72.8 |
Find 85 sgRNAs with CRISPR-Local
Find 186 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCTACTGAATCGTCCATTTA+TGG | 0.117952 | 6_4:+18339084 | Msa0980320:CDS |
| TTTCCTCATTGGGTACTTTA+TGG | 0.147771 | 6_4:+18339107 | Msa0980320:CDS |
| GCTAACTTCCTTATTCATTT+TGG | 0.154021 | 6_4:+18338549 | Msa0980320:CDS |
| ACACCTATTGTAAGACTTAT+TGG | 0.168236 | 6_4:-18338310 | None:intergenic |
| ACCATTTGTTTCAACCTTTA+GGG | 0.222439 | 6_4:+18338747 | Msa0980320:CDS |
| TGTCAACATCATCATGCTTT+TGG | 0.230506 | 6_4:-18338440 | None:intergenic |
| AAGCTTTAAGAGCAACATTT+TGG | 0.236479 | 6_4:+18338233 | Msa0980320:CDS |
| TACCATTTGTTTCAACCTTT+AGG | 0.276772 | 6_4:+18338746 | Msa0980320:CDS |
| ATAGCATGTGCTGGAGTTCT+TGG | 0.285904 | 6_4:+18338172 | Msa0980320:CDS |
| GTAATTATCCTCACAATCTA+TGG | 0.290297 | 6_4:+18338082 | Msa0980320:CDS |
| GTAGCCTAGTGTGTGGAATT+TGG | 0.290535 | 6_4:+18339037 | Msa0980320:CDS |
| CTTGCTTCTAATTTCACTTT+TGG | 0.295934 | 6_4:+18338060 | Msa0980320:CDS |
| TTCAATCCCTTTATAGTTGT+TGG | 0.296085 | 6_4:+18338356 | Msa0980320:CDS |
| TTCTTGTGTTAGTTGCTATA+TGG | 0.298267 | 6_4:+18338822 | Msa0980320:CDS |
| TACAATAGGTGTTATTGCTT+TGG | 0.307956 | 6_4:+18338321 | Msa0980320:CDS |
| GACTGACCCAACAACTATAA+AGG | 0.311474 | 6_4:-18338363 | None:intergenic |
| CCCAATGAGGAAACCATAAA+TGG | 0.313166 | 6_4:-18339097 | None:intergenic |
| CCATTTATGGTTTCCTCATT+GGG | 0.330085 | 6_4:+18339097 | Msa0980320:CDS |
| CATGTTGGAGTTTATAATAA+AGG | 0.330732 | 6_4:+18338892 | Msa0980320:CDS |
| CAAAATCACCAAAATGAATA+AGG | 0.335004 | 6_4:-18338557 | None:intergenic |
| TTCTTGTGAGTTGTGGAAAT+AGG | 0.337097 | 6_4:+18338857 | Msa0980320:CDS |
| TCCATTTATGGTTTCCTCAT+TGG | 0.341481 | 6_4:+18339096 | Msa0980320:CDS |
| TGTTTCCTTAGTGGAGTGGC+TGG | 0.342077 | 6_4:+18339003 | Msa0980320:CDS |
| AGGGTAAAGTATATGAATTT+AGG | 0.344465 | 6_4:+18338637 | Msa0980320:CDS |
| TCTTGTGTTAGTTGCTATAT+GGG | 0.346364 | 6_4:+18338823 | Msa0980320:CDS |
| GACACTTTAAAGCACTTCAT+TGG | 0.349658 | 6_4:+18338697 | Msa0980320:CDS |
| CAATATTTCCGGTTAGTGTT+TGG | 0.364426 | 6_4:-18338003 | None:intergenic |
| AATGGAGGGTACCATTTCAT+TGG | 0.379145 | 6_4:-18338139 | None:intergenic |
| GTTTCCTTAGTGGAGTGGCT+GGG | 0.397305 | 6_4:+18339004 | Msa0980320:CDS |
| TTTCTTGTGTTTGGAATTGG+AGG | 0.403496 | 6_4:+18338499 | Msa0980320:CDS |
| CTATACCTTGGTAGAGTTTG+TGG | 0.406067 | 6_4:-18337560 | None:intergenic |
| TTCATTGGAAGTGTTTCAAT+TGG | 0.409381 | 6_4:+18338712 | Msa0980320:CDS |
| TCAATCCCTTTATAGTTGTT+GGG | 0.410200 | 6_4:+18338357 | Msa0980320:CDS |
| ATGTTGGAGTTTATAATAAA+GGG | 0.413420 | 6_4:+18338893 | Msa0980320:CDS |
| TTTCTAAACCAAACACTAAC+CGG | 0.416246 | 6_4:+18337995 | Msa0980320:CDS |
| GTGAGTTGTGGAAATAGGTT+TGG | 0.428707 | 6_4:+18338862 | Msa0980320:CDS |
| GCAACTGTTCCATACGCATT+GGG | 0.434805 | 6_4:-18340227 | None:intergenic |
| ACTGACCCAACAACTATAAA+GGG | 0.439021 | 6_4:-18338362 | None:intergenic |
| TTCAATGTACACAAACATAA+TGG | 0.439086 | 6_4:-18338284 | None:intergenic |
| ACAATTTCCATCCAATGAAA+TGG | 0.439986 | 6_4:+18338128 | Msa0980320:CDS |
| TTTCCTTAGTGGAGTGGCTG+GGG | 0.440707 | 6_4:+18339005 | Msa0980320:CDS |
| TCTCCAATAAGTCTTACAAT+AGG | 0.448899 | 6_4:+18338307 | Msa0980320:CDS |
| CCCCTAAAGGTTGAAACAAA+TGG | 0.456356 | 6_4:-18338748 | None:intergenic |
| AGTCAAAATGAGTGCTTTGT+GGG | 0.458332 | 6_4:-18340197 | None:intergenic |
| TGCAAGCATCATGTGATACT+TGG | 0.463779 | 6_4:+18338920 | Msa0980320:CDS |
| ATTTCATTGGATGGAAATTG+TGG | 0.466608 | 6_4:-18338126 | None:intergenic |
| TGCAACTGTTCCATACGCAT+TGG | 0.483863 | 6_4:-18340228 | None:intergenic |
| TTCATCTCAATAGCATGTGC+TGG | 0.487108 | 6_4:+18338163 | Msa0980320:CDS |
| CTGGAGTTCTTGGTTTCACA+TGG | 0.487849 | 6_4:+18338182 | Msa0980320:CDS |
| TTTAGGTTGTGGAGTAATGA+TGG | 0.488119 | 6_4:+18338654 | Msa0980320:CDS |
| TTTGGTGCAACTTATAGACT+TGG | 0.488204 | 6_4:+18338963 | Msa0980320:CDS |
| GAAATTGCATGGTCCATCCT+AGG | 0.493339 | 6_4:-18338585 | None:intergenic |
| CCCTTTGCTTACATGTGCAA+TGG | 0.496721 | 6_4:+18338261 | Msa0980320:CDS |
| GGGTTTGAGAGGTAGAGATT+AGG | 0.500978 | 6_4:-18338105 | None:intergenic |
| TTCTTGGTTTCACATGGCAA+TGG | 0.505990 | 6_4:+18338188 | Msa0980320:CDS |
| TTTGCAGGTTCGATTGGCAT+TGG | 0.506596 | 6_4:+18340125 | Msa0980320:intron |
| CATGCTATTGAGATGAAGAA+TGG | 0.511986 | 6_4:-18338157 | None:intergenic |
| TGACCTAGCAAATCCCCTAA+AGG | 0.513028 | 6_4:-18338761 | None:intergenic |
| CTCAACTATCCCAATGCGTA+TGG | 0.522405 | 6_4:+18340218 | Msa0980320:CDS |
| TTTCATTGGATGGAAATTGT+GGG | 0.522682 | 6_4:-18338125 | None:intergenic |
| GCATCAATTCTTGTGAGTTG+TGG | 0.523891 | 6_4:+18338850 | Msa0980320:CDS |
| CACATTCTTAAGAAATTGCA+TGG | 0.527448 | 6_4:-18338596 | None:intergenic |
| GAGGGTACCATTTCATTGGA+TGG | 0.530856 | 6_4:-18338135 | None:intergenic |
| CTTATAGACTTGGATCTCAC+TGG | 0.530964 | 6_4:+18338973 | Msa0980320:CDS |
| AAGTATATGAATTTAGGTTG+TGG | 0.531450 | 6_4:+18338643 | Msa0980320:CDS |
| GAGTCAAAATGAGTGCTTTG+TGG | 0.536742 | 6_4:-18340198 | None:intergenic |
| CAACCTTTAGGGGATTTGCT+AGG | 0.538750 | 6_4:+18338758 | Msa0980320:CDS |
| TGATTCAAGTCACAATTTCA+AGG | 0.542291 | 6_4:+18338617 | Msa0980320:CDS |
| TTCCTTAGTGGAGTGGCTGG+GGG | 0.548971 | 6_4:+18339006 | Msa0980320:CDS |
| CCATTGCACATGTAAGCAAA+GGG | 0.550105 | 6_4:-18338261 | None:intergenic |
| GCCATTGCACATGTAAGCAA+AGG | 0.550947 | 6_4:-18338262 | None:intergenic |
| GATTCAAGTCACAATTTCAA+GGG | 0.576061 | 6_4:+18338618 | Msa0980320:CDS |
| AAAGTGAAATTAGAAGCAAG+TGG | 0.610952 | 6_4:-18338057 | None:intergenic |
| GCTATTGAGATGAAGAATGG+AGG | 0.611632 | 6_4:-18338154 | None:intergenic |
| CTATTGAGATGAAGAATGGA+GGG | 0.613362 | 6_4:-18338153 | None:intergenic |
| CCATTTGTTTCAACCTTTAG+GGG | 0.619066 | 6_4:+18338748 | Msa0980320:CDS |
| AGATTAGGCCATAGATTGTG+AGG | 0.620407 | 6_4:-18338090 | None:intergenic |
| TAAGCAGAGACACATGCTTG+TGG | 0.623719 | 6_4:-18340153 | None:intergenic |
| ATGGAAATTGTGGGTTTGAG+AGG | 0.633454 | 6_4:-18338116 | None:intergenic |
| AGCAATAAAGAATTCCAATG+AGG | 0.636697 | 6_4:-18338474 | None:intergenic |
| GCAAGCATCATGTGATACTT+GGG | 0.651754 | 6_4:+18338921 | Msa0980320:CDS |
| GCAGTTAGTAGCCTAGTGTG+TGG | 0.659768 | 6_4:+18339030 | Msa0980320:CDS |
| TGCTCCAAATTCCACACACT+AGG | 0.669628 | 6_4:-18339041 | None:intergenic |
| TTACCATAAAGTACCCAATG+AGG | 0.684583 | 6_4:-18339110 | None:intergenic |
| TGTCACCACAAACTCTACCA+AGG | 0.691496 | 6_4:+18337555 | Msa0980320:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTTTTGAAGAATAAAATT+AGG | - | chr6_4:18339409-18339428 | None:intergenic | 10.0% |
| !!! | CAAATTCATATATTTTAAAA+CGG | + | chr6_4:18339809-18339828 | Msa0980320:intron | 10.0% |
| !!! | AAATTCATATATTTTAAAAC+GGG | + | chr6_4:18339810-18339829 | Msa0980320:intron | 10.0% |
| !! | AAAACTACATATAATGTAAA+AGG | - | chr6_4:18339380-18339399 | None:intergenic | 15.0% |
| !!! | ATTCCTAATTTTATTCAATA+TGG | + | chr6_4:18339431-18339450 | Msa0980320:intron | 15.0% |
| !! | TACTCAAAAAAAAAAATAGA+AGG | - | chr6_4:18339466-18339485 | None:intergenic | 15.0% |
| !! | TAGAAGATTTAAAAAATTGA+GGG | - | chr6_4:18339524-18339543 | None:intergenic | 15.0% |
| !! | TTAGAAGATTTAAAAAATTG+AGG | - | chr6_4:18339525-18339544 | None:intergenic | 15.0% |
| !!! | AATTCATATATTTTAAAACG+GGG | + | chr6_4:18339811-18339830 | Msa0980320:intron | 15.0% |
| !!! | TTTGTTAAATTGAAGATTTT+TGG | - | chr6_4:18339839-18339858 | None:intergenic | 15.0% |
| !!! | ATATAAAGATATGTTACTTT+TGG | - | chr6_4:18340067-18340086 | None:intergenic | 15.0% |
| !! | TAGATATATAACAAATGCAA+TGG | - | chr6_4:18337916-18337935 | None:intergenic | 20.0% |
| !! | ATGTTGGAGTTTATAATAAA+GGG | + | chr6_4:18338893-18338912 | Msa0980320:CDS | 20.0% |
| !! | AAAATACCAATTAACTTCAT+CGG | + | chr6_4:18339199-18339218 | Msa0980320:intron | 20.0% |
| !!! | AGGTTTAAATTGTTATTTAC+TGG | + | chr6_4:18339276-18339295 | Msa0980320:intron | 20.0% |
| !! | TCTCCATATTGAATAAAATT+AGG | - | chr6_4:18339437-18339456 | None:intergenic | 20.0% |
| !!! | ATCCTTCCATTTTTATATTT+GGG | + | chr6_4:18339490-18339509 | Msa0980320:intron | 20.0% |
| !! | CAAAATCCCAAATATAAAAA+TGG | - | chr6_4:18339499-18339518 | None:intergenic | 20.0% |
| !!! | CATTTTTATATTTGGGATTT+TGG | + | chr6_4:18339497-18339516 | Msa0980320:intron | 20.0% |
| !! | AGAAGATTTAAAAAATTGAG+GGG | - | chr6_4:18339523-18339542 | None:intergenic | 20.0% |
| !! | ATTTCTATCTCAAAATTCAT+TGG | + | chr6_4:18339759-18339778 | Msa0980320:intron | 20.0% |
| !! | GAAAAAATGTCAAAAAATTG+TGG | + | chr6_4:18339784-18339803 | Msa0980320:intron | 20.0% |
| !!! | ATTCATATATTTTAAAACGG+GGG | + | chr6_4:18339812-18339831 | Msa0980320:intron | 20.0% |
| !! | TCTTCAATTTAACAAAATAG+TGG | + | chr6_4:18339843-18339862 | Msa0980320:intron | 20.0% |
| !! | TTTCTTTAACAATTTCATGT+GGG | - | chr6_4:18340044-18340063 | None:intergenic | 20.0% |
| !! | TATAGAGTTAAATATGTTTG+TGG | - | chr6_4:18340102-18340121 | None:intergenic | 20.0% |
| !!! | TTTAACTCTATATATTTTGC+AGG | + | chr6_4:18340110-18340129 | Msa0980320:intron | 20.0% |
| ! | TTTCTCATATTTCTCATGTA+TGG | - | chr6_4:18337656-18337675 | None:intergenic | 25.0% |
| ! | CAAATGCAATGGTTATATTA+GGG | - | chr6_4:18337905-18337924 | None:intergenic | 25.0% |
| ! | ACAAATGCAATGGTTATATT+AGG | - | chr6_4:18337906-18337925 | None:intergenic | 25.0% |
| !! | GATTTTTCTCACAATATTTC+CGG | - | chr6_4:18338017-18338036 | None:intergenic | 25.0% |
| !!! | TTGCTCTTAAAGCTTTTTTA+GGG | - | chr6_4:18338228-18338247 | None:intergenic | 25.0% |
| ! | TTCAATGTACACAAACATAA+TGG | - | chr6_4:18338287-18338306 | None:intergenic | 25.0% |
| !! | TGAAGTTGACAAAATTTTGT+TGG | - | chr6_4:18338404-18338423 | None:intergenic | 25.0% |
| !!! | TATTGCTTTTTTCTTGTGTT+TGG | + | chr6_4:18338490-18338509 | Msa0980320:CDS | 25.0% |
| !!! | TTTTTTCTTGTGTTTGGAAT+TGG | + | chr6_4:18338496-18338515 | Msa0980320:CDS | 25.0% |
| ! | CAAAATCACCAAAATGAATA+AGG | - | chr6_4:18338560-18338579 | None:intergenic | 25.0% |
| ! | AGGGTAAAGTATATGAATTT+AGG | + | chr6_4:18338637-18338656 | Msa0980320:CDS | 25.0% |
| !!! | AAGTATATGAATTTAGGTTG+TGG | + | chr6_4:18338643-18338662 | Msa0980320:CDS | 25.0% |
| ! | CATGTTGGAGTTTATAATAA+AGG | + | chr6_4:18338892-18338911 | Msa0980320:CDS | 25.0% |
| !! | ATACTTGGGACATTTTTAAT+AGG | + | chr6_4:18338935-18338954 | Msa0980320:CDS | 25.0% |
| !! | TACTTGGGACATTTTTAATA+GGG | + | chr6_4:18338936-18338955 | Msa0980320:CDS | 25.0% |
| ! | ATTTAAACCTCAAATTCCAT+CGG | - | chr6_4:18339266-18339285 | None:intergenic | 25.0% |
| !! | TCATTTCACACATTTAAGAT+TGG | + | chr6_4:18339343-18339362 | Msa0980320:intron | 25.0% |
| !! | CATTTCACACATTTAAGATT+GGG | + | chr6_4:18339344-18339363 | Msa0980320:intron | 25.0% |
| !!! | GATCCTTCCATTTTTATATT+TGG | + | chr6_4:18339489-18339508 | Msa0980320:intron | 25.0% |
| ! | ATCCCAAATATAAAAATGGA+AGG | - | chr6_4:18339495-18339514 | None:intergenic | 25.0% |
| !! | AAGTTATATGATGATGTGAA+AGG | - | chr6_4:18339726-18339745 | None:intergenic | 25.0% |
| ! | GTTTCTTTAACAATTTCATG+TGG | - | chr6_4:18340045-18340064 | None:intergenic | 25.0% |
| TTGTTCTTGACACATAAACA+AGG | - | chr6_4:18337628-18337647 | None:intergenic | 30.0% | |
| !! | GCTGCAATATAAAGTTTTAG+AGG | - | chr6_4:18337728-18337747 | None:intergenic | 30.0% |
| TTAAAAACCATGCCTATAAG+TGG | + | chr6_4:18337772-18337791 | Msa0980320:intron | 30.0% | |
| TTTGATATTGTCGAGAATTG+TGG | + | chr6_4:18337811-18337830 | Msa0980320:intron | 30.0% | |
| TTTCTAAACCAAACACTAAC+CGG | + | chr6_4:18337995-18338014 | Msa0980320:CDS | 30.0% | |
| AAAGTGAAATTAGAAGCAAG+TGG | - | chr6_4:18338060-18338079 | None:intergenic | 30.0% | |
| ! | CTTGCTTCTAATTTCACTTT+TGG | + | chr6_4:18338060-18338079 | Msa0980320:CDS | 30.0% |
| GTAATTATCCTCACAATCTA+TGG | + | chr6_4:18338082-18338101 | Msa0980320:CDS | 30.0% | |
| TTTCATTGGATGGAAATTGT+GGG | - | chr6_4:18338128-18338147 | None:intergenic | 30.0% | |
| ATTTCATTGGATGGAAATTG+TGG | - | chr6_4:18338129-18338148 | None:intergenic | 30.0% | |
| ACAATTTCCATCCAATGAAA+TGG | + | chr6_4:18338128-18338147 | Msa0980320:CDS | 30.0% | |
| !!! | GTTGCTCTTAAAGCTTTTTT+AGG | - | chr6_4:18338229-18338248 | None:intergenic | 30.0% |
| !!! | AAGCTTTAAGAGCAACATTT+TGG | + | chr6_4:18338233-18338252 | Msa0980320:CDS | 30.0% |
| TCTCCAATAAGTCTTACAAT+AGG | + | chr6_4:18338307-18338326 | Msa0980320:CDS | 30.0% | |
| ACACCTATTGTAAGACTTAT+TGG | - | chr6_4:18338313-18338332 | None:intergenic | 30.0% | |
| !! | TACAATAGGTGTTATTGCTT+TGG | + | chr6_4:18338321-18338340 | Msa0980320:CDS | 30.0% |
| TTCAATCCCTTTATAGTTGT+TGG | + | chr6_4:18338356-18338375 | Msa0980320:CDS | 30.0% | |
| TCAATCCCTTTATAGTTGTT+GGG | + | chr6_4:18338357-18338376 | Msa0980320:CDS | 30.0% | |
| ! | ACATTTTCATCAATCCTCAT+TGG | + | chr6_4:18338460-18338479 | Msa0980320:CDS | 30.0% |
| AGCAATAAAGAATTCCAATG+AGG | - | chr6_4:18338477-18338496 | None:intergenic | 30.0% | |
| ! | GCTAACTTCCTTATTCATTT+TGG | + | chr6_4:18338549-18338568 | Msa0980320:CDS | 30.0% |
| CACATTCTTAAGAAATTGCA+TGG | - | chr6_4:18338599-18338618 | None:intergenic | 30.0% | |
| TGATTCAAGTCACAATTTCA+AGG | + | chr6_4:18338617-18338636 | Msa0980320:CDS | 30.0% | |
| GATTCAAGTCACAATTTCAA+GGG | + | chr6_4:18338618-18338637 | Msa0980320:CDS | 30.0% | |
| !! | TTCATTGGAAGTGTTTCAAT+TGG | + | chr6_4:18338712-18338731 | Msa0980320:CDS | 30.0% |
| TACCATTTGTTTCAACCTTT+AGG | + | chr6_4:18338746-18338765 | Msa0980320:CDS | 30.0% | |
| ACCATTTGTTTCAACCTTTA+GGG | + | chr6_4:18338747-18338766 | Msa0980320:CDS | 30.0% | |
| GCTAGGTCAATAAAAATTGT+TGG | + | chr6_4:18338775-18338794 | Msa0980320:CDS | 30.0% | |
| AGGTCAATAAAAATTGTTGG+AGG | + | chr6_4:18338778-18338797 | Msa0980320:CDS | 30.0% | |
| TTCTTGTGTTAGTTGCTATA+TGG | + | chr6_4:18338822-18338841 | Msa0980320:CDS | 30.0% | |
| TCTTGTGTTAGTTGCTATAT+GGG | + | chr6_4:18338823-18338842 | Msa0980320:CDS | 30.0% | |
| !!! | CATTTTTAATAGGGTTGGTT+TGG | + | chr6_4:18338945-18338964 | Msa0980320:CDS | 30.0% |
| TAATTGCCGATGAAGTTAAT+TGG | - | chr6_4:18339208-18339227 | None:intergenic | 30.0% | |
| ! | AATTGTCGATGGTTTTTAAC+CGG | + | chr6_4:18339227-18339246 | Msa0980320:intron | 30.0% |
| ! | ATTTTGCTCTCTTGTGAAAT+TGG | + | chr6_4:18339546-18339565 | Msa0980320:intron | 30.0% |
| ! | TTTTGCTCTCTTGTGAAATT+GGG | + | chr6_4:18339547-18339566 | Msa0980320:intron | 30.0% |
| TGTAAAACATTGCCAAAAAC+AGG | + | chr6_4:18339584-18339603 | Msa0980320:intron | 30.0% | |
| !! | CTTCAATTTTAGCCTGTTTT+TGG | - | chr6_4:18339599-18339618 | None:intergenic | 30.0% |
| CAGGCTAAAATTGAAGAAAT+AGG | + | chr6_4:18339603-18339622 | Msa0980320:intron | 30.0% | |
| TGAAGAAATAGGTGCATTAT+AGG | + | chr6_4:18339614-18339633 | Msa0980320:intron | 30.0% | |
| !!! | GCACTTAGTTTTGCATTTTA+AGG | + | chr6_4:18340012-18340031 | Msa0980320:intron | 30.0% |
| ! | ATATATTTTGCAGGTTCGAT+TGG | + | chr6_4:18340119-18340138 | Msa0980320:intron | 30.0% |
| TTGAGAGAGATACTATACCT+TGG | - | chr6_4:18337575-18337594 | None:intergenic | 35.0% | |
| ! | TCGAGAATTGTGGAAGTATA+GGG | + | chr6_4:18337821-18337840 | Msa0980320:intron | 35.0% |
| CAATATTTCCGGTTAGTGTT+TGG | - | chr6_4:18338006-18338025 | None:intergenic | 35.0% | |
| CTATTGAGATGAAGAATGGA+GGG | - | chr6_4:18338156-18338175 | None:intergenic | 35.0% | |
| CATGCTATTGAGATGAAGAA+TGG | - | chr6_4:18338160-18338179 | None:intergenic | 35.0% | |
| ACTGACCCAACAACTATAAA+GGG | - | chr6_4:18338365-18338384 | None:intergenic | 35.0% | |
| ! | AACATCATCATGCTTTTGGA+AGG | - | chr6_4:18338439-18338458 | None:intergenic | 35.0% |
| ! | TGTCAACATCATCATGCTTT+TGG | - | chr6_4:18338443-18338462 | None:intergenic | 35.0% |
| ! | TTTCTTGTGTTTGGAATTGG+AGG | + | chr6_4:18338499-18338518 | Msa0980320:CDS | 35.0% |
| !! | TTTAGGTTGTGGAGTAATGA+TGG | + | chr6_4:18338654-18338673 | Msa0980320:CDS | 35.0% |
| !! | GACACTTTAAAGCACTTCAT+TGG | + | chr6_4:18338697-18338716 | Msa0980320:CDS | 35.0% |
| CCATTTGTTTCAACCTTTAG+GGG | + | chr6_4:18338748-18338767 | Msa0980320:CDS | 35.0% | |
| TTCTTGTGAGTTGTGGAAAT+AGG | + | chr6_4:18338857-18338876 | Msa0980320:CDS | 35.0% | |
| ! | TGGGACATTTTTAATAGGGT+TGG | + | chr6_4:18338940-18338959 | Msa0980320:CDS | 35.0% |
| ! | TTTGGTGCAACTTATAGACT+TGG | + | chr6_4:18338963-18338982 | Msa0980320:CDS | 35.0% |
| !! | GGATCATTTTGTTTCCTTAG+TGG | + | chr6_4:18338994-18339013 | Msa0980320:CDS | 35.0% |
| !! | ATTTTGTTTCCTTAGTGGAG+TGG | + | chr6_4:18338999-18339018 | Msa0980320:CDS | 35.0% |
| TCCATTTATGGTTTCCTCAT+TGG | + | chr6_4:18339096-18339115 | Msa0980320:CDS | 35.0% | |
| CCATTTATGGTTTCCTCATT+GGG | + | chr6_4:18339097-18339116 | Msa0980320:CDS | 35.0% | |
| TTTCCTCATTGGGTACTTTA+TGG | + | chr6_4:18339107-18339126 | Msa0980320:CDS | 35.0% | |
| ! | TTACCATAAAGTACCCAATG+AGG | - | chr6_4:18339113-18339132 | None:intergenic | 35.0% |
| ! | ATTGTTGTTCCCACATCAAA+GGG | + | chr6_4:18339159-18339178 | Msa0980320:intron | 35.0% |
| TGGTGTTTCTTAGCATTGTT+TGG | + | chr6_4:18339296-18339315 | Msa0980320:intron | 35.0% | |
| ! | AGGTGCATTATAGGTTTGTT+TGG | + | chr6_4:18339623-18339642 | Msa0980320:intron | 35.0% |
| ! | TGATGATGTGAACGTGATAT+TGG | - | chr6_4:18339678-18339697 | None:intergenic | 35.0% |
| TCTTAATGAGTGACTGATGA+AGG | - | chr6_4:18339986-18340005 | None:intergenic | 35.0% | |
| AGTCAAAATGAGTGCTTTGT+GGG | - | chr6_4:18340200-18340219 | None:intergenic | 35.0% | |
| CTATACCTTGGTAGAGTTTG+TGG | - | chr6_4:18337563-18337582 | None:intergenic | 40.0% | |
| ATGAGAAAATGTGACCGATG+TGG | + | chr6_4:18337668-18337687 | Msa0980320:intron | 40.0% | |
| GCATTCTACAATCGCAATTG+CGG | - | chr6_4:18337750-18337769 | None:intergenic | 40.0% | |
| ! | AAAATGCGACTGCCACTTAT+AGG | - | chr6_4:18337787-18337806 | None:intergenic | 40.0% |
| ! | GTCGAGAATTGTGGAAGTAT+AGG | + | chr6_4:18337820-18337839 | Msa0980320:intron | 40.0% |
| AAAGTCCACAACTGCGATTT+CGG | - | chr6_4:18337875-18337894 | None:intergenic | 40.0% | |
| ! | CAACTTGTGTTTTCTTGTGC+AGG | + | chr6_4:18337958-18337977 | Msa0980320:intron | 40.0% |
| AGATTAGGCCATAGATTGTG+AGG | - | chr6_4:18338093-18338112 | None:intergenic | 40.0% | |
| ATGGAAATTGTGGGTTTGAG+AGG | - | chr6_4:18338119-18338138 | None:intergenic | 40.0% | |
| !! | AATGGAGGGTACCATTTCAT+TGG | - | chr6_4:18338142-18338161 | None:intergenic | 40.0% |
| GCTATTGAGATGAAGAATGG+AGG | - | chr6_4:18338157-18338176 | None:intergenic | 40.0% | |
| TTCATCTCAATAGCATGTGC+TGG | + | chr6_4:18338163-18338182 | Msa0980320:CDS | 40.0% | |
| TTCTTGGTTTCACATGGCAA+TGG | + | chr6_4:18338188-18338207 | Msa0980320:CDS | 40.0% | |
| CCATTGCACATGTAAGCAAA+GGG | - | chr6_4:18338264-18338283 | None:intergenic | 40.0% | |
| GACTGACCCAACAACTATAA+AGG | - | chr6_4:18338366-18338385 | None:intergenic | 40.0% | |
| !! | TTGGTGATTTTGTTGAGCCT+AGG | + | chr6_4:18338568-18338587 | Msa0980320:CDS | 40.0% |
| ! | TGATTTTGTTGAGCCTAGGA+TGG | + | chr6_4:18338572-18338591 | Msa0980320:CDS | 40.0% |
| CCCCTAAAGGTTGAAACAAA+TGG | - | chr6_4:18338751-18338770 | None:intergenic | 40.0% | |
| GCATCAATTCTTGTGAGTTG+TGG | + | chr6_4:18338850-18338869 | Msa0980320:CDS | 40.0% | |
| GTGAGTTGTGGAAATAGGTT+TGG | + | chr6_4:18338862-18338881 | Msa0980320:CDS | 40.0% | |
| !!! | AGGTTTGGTTTTGTGCATGT+TGG | + | chr6_4:18338877-18338896 | Msa0980320:CDS | 40.0% |
| TGCAAGCATCATGTGATACT+TGG | + | chr6_4:18338920-18338939 | Msa0980320:CDS | 40.0% | |
| GCAAGCATCATGTGATACTT+GGG | + | chr6_4:18338921-18338940 | Msa0980320:CDS | 40.0% | |
| CTTATAGACTTGGATCTCAC+TGG | + | chr6_4:18338973-18338992 | Msa0980320:CDS | 40.0% | |
| GCTACTGAATCGTCCATTTA+TGG | + | chr6_4:18339084-18339103 | Msa0980320:CDS | 40.0% | |
| CCCAATGAGGAAACCATAAA+TGG | - | chr6_4:18339100-18339119 | None:intergenic | 40.0% | |
| ! | GATTGTTGTTCCCACATCAA+AGG | + | chr6_4:18339158-18339177 | Msa0980320:intron | 40.0% |
| TTCCTAACACCCTTTGATGT+GGG | - | chr6_4:18339171-18339190 | None:intergenic | 40.0% | |
| TTTCCTAACACCCTTTGATG+TGG | - | chr6_4:18339172-18339191 | None:intergenic | 40.0% | |
| !! | AAAGGGTGTTAGGAAACACT+AGG | + | chr6_4:18339176-18339195 | Msa0980320:intron | 40.0% |
| CATCGGCAATTAATTGTCGA+TGG | + | chr6_4:18339216-18339235 | Msa0980320:intron | 40.0% | |
| TAAACCTCAAATTCCATCGG+CGG | - | chr6_4:18339263-18339282 | None:intergenic | 40.0% | |
| GAGTCAAAATGAGTGCTTTG+TGG | - | chr6_4:18340201-18340220 | None:intergenic | 40.0% | |
| TGTCACCACAAACTCTACCA+AGG | + | chr6_4:18337555-18337574 | Msa0980320:CDS | 45.0% | |
| TTGCGCAATTGTGACCACAT+CGG | - | chr6_4:18337685-18337704 | None:intergenic | 45.0% | |
| GGGTTTGAGAGGTAGAGATT+AGG | - | chr6_4:18338108-18338127 | None:intergenic | 45.0% | |
| !! | GAGGGTACCATTTCATTGGA+TGG | - | chr6_4:18338138-18338157 | None:intergenic | 45.0% |
| ATAGCATGTGCTGGAGTTCT+TGG | + | chr6_4:18338172-18338191 | Msa0980320:CDS | 45.0% | |
| CTGGAGTTCTTGGTTTCACA+TGG | + | chr6_4:18338182-18338201 | Msa0980320:CDS | 45.0% | |
| CCCTTTGCTTACATGTGCAA+TGG | + | chr6_4:18338261-18338280 | Msa0980320:CDS | 45.0% | |
| GCCATTGCACATGTAAGCAA+AGG | - | chr6_4:18338265-18338284 | None:intergenic | 45.0% | |
| GAAATTGCATGGTCCATCCT+AGG | - | chr6_4:18338588-18338607 | None:intergenic | 45.0% | |
| ! | CAACCTTTAGGGGATTTGCT+AGG | + | chr6_4:18338758-18338777 | Msa0980320:CDS | 45.0% |
| TGACCTAGCAAATCCCCTAA+AGG | - | chr6_4:18338764-18338783 | None:intergenic | 45.0% | |
| GTAGCCTAGTGTGTGGAATT+TGG | + | chr6_4:18339037-18339056 | Msa0980320:CDS | 45.0% | |
| TGCTCCAAATTCCACACACT+AGG | - | chr6_4:18339044-18339063 | None:intergenic | 45.0% | |
| !! | TTCCCACATCAAAGGGTGTT+AGG | + | chr6_4:18339166-18339185 | Msa0980320:intron | 45.0% |
| ! | TGTCGATGGTTTTTAACCGG+CGG | + | chr6_4:18339230-18339249 | Msa0980320:intron | 45.0% |
| TTAACCGCCGATGGAATTTG+AGG | + | chr6_4:18339256-18339275 | Msa0980320:intron | 45.0% | |
| TTTGCAGGTTCGATTGGCAT+TGG | + | chr6_4:18340125-18340144 | Msa0980320:intron | 45.0% | |
| TAAGCAGAGACACATGCTTG+TGG | - | chr6_4:18340156-18340175 | None:intergenic | 45.0% | |
| CTCAACTATCCCAATGCGTA+TGG | + | chr6_4:18340218-18340237 | Msa0980320:CDS | 45.0% | |
| GCAACTGTTCCATACGCATT+GGG | - | chr6_4:18340230-18340249 | None:intergenic | 45.0% | |
| TGCAACTGTTCCATACGCAT+TGG | - | chr6_4:18340231-18340250 | None:intergenic | 45.0% | |
| TGTTTCCTTAGTGGAGTGGC+TGG | + | chr6_4:18339003-18339022 | Msa0980320:CDS | 50.0% | |
| GTTTCCTTAGTGGAGTGGCT+GGG | + | chr6_4:18339004-18339023 | Msa0980320:CDS | 50.0% | |
| TTTCCTTAGTGGAGTGGCTG+GGG | + | chr6_4:18339005-18339024 | Msa0980320:CDS | 50.0% | |
| GCAGTTAGTAGCCTAGTGTG+TGG | + | chr6_4:18339030-18339049 | Msa0980320:CDS | 50.0% | |
| ! | GCGACTGCCACTTATAGGCA+TGG | - | chr6_4:18337782-18337801 | None:intergenic | 55.0% |
| TGCGATTTCGGCTGCGAATG+GGG | - | chr6_4:18337863-18337882 | None:intergenic | 55.0% | |
| CTGCGATTTCGGCTGCGAAT+GGG | - | chr6_4:18337864-18337883 | None:intergenic | 55.0% | |
| ACTGCGATTTCGGCTGCGAA+TGG | - | chr6_4:18337865-18337884 | None:intergenic | 55.0% | |
| TTCCTTAGTGGAGTGGCTGG+GGG | + | chr6_4:18339006-18339025 | Msa0980320:CDS | 55.0% | |
| TCGGCTGCGAATGGGGATTG+AGG | - | chr6_4:18337856-18337875 | None:intergenic | 60.0% | |
| CGCAGCCGAAATCGCAGTTG+TGG | + | chr6_4:18337867-18337886 | Msa0980320:intron | 60.0% | |
| CACCCCCAGCCACTCCACTA+AGG | - | chr6_4:18339011-18339030 | None:intergenic | 65.0% | |
| CATCGGCGGTTAACTGCCGC+CGG | - | chr6_4:18339249-18339268 | None:intergenic | 65.0% | |
| CGGCGGCAGTTAACCGCCGA+TGG | + | chr6_4:18339247-18339266 | Msa0980320:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_4 | gene | 18337532 | 18340266 | 18337532 | ID=Msa0980320;Name=Msa0980320 |
| chr6_4 | mRNA | 18337532 | 18340266 | 18337532 | ID=Msa0980320-mRNA-1;Parent=Msa0980320;Name=Msa0980320-mRNA-1;_AED=0.02;_eAED=0.02;_QI=0|0|0|0.66|1|1|3|0|442 |
| chr6_4 | exon | 18337532 | 18337576 | 18337532 | ID=Msa0980320-mRNA-1:exon:5682;Parent=Msa0980320-mRNA-1 |
| chr6_4 | exon | 18337980 | 18339128 | 18337980 | ID=Msa0980320-mRNA-1:exon:5683;Parent=Msa0980320-mRNA-1 |
| chr6_4 | exon | 18340132 | 18340266 | 18340132 | ID=Msa0980320-mRNA-1:exon:5684;Parent=Msa0980320-mRNA-1 |
| chr6_4 | CDS | 18337532 | 18337576 | 18337532 | ID=Msa0980320-mRNA-1:cds;Parent=Msa0980320-mRNA-1 |
| chr6_4 | CDS | 18337980 | 18339128 | 18337980 | ID=Msa0980320-mRNA-1:cds;Parent=Msa0980320-mRNA-1 |
| chr6_4 | CDS | 18340132 | 18340266 | 18340132 | ID=Msa0980320-mRNA-1:cds;Parent=Msa0980320-mRNA-1 |
| Gene Sequence |
| Protein sequence |
