AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0878380

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0878380 MtrunA17_Chr6g0460921 79.381 485 36 6 1 482 1 424 0.0 657
Msa0878380 MtrunA17_Chr5g0403241 33.520 179 116 3 300 477 1330 1506 9.04e-19 90.1
Msa0878380 MtrunA17_Chr7g0262001 34.161 161 98 4 299 455 519 675 1.06e-18 89.4
Msa0878380 MtrunA17_Chr4g0075321 36.111 180 110 4 300 477 887 1063 1.39e-18 89.4
Msa0878380 MtrunA17_Chr1g0183321 31.875 160 103 3 299 455 563 719 1.64e-18 89.0
Msa0878380 MtrunA17_Chr1g0190311 34.146 164 95 4 299 455 460 617 1.68e-17 85.5
Msa0878380 MtrunA17_Chr7g0255181 32.432 185 118 5 299 477 521 704 2.78e-17 84.7
Msa0878380 MtrunA17_Chr3g0125251 34.444 180 100 8 300 477 1301 1464 3.68e-17 85.1
Msa0878380 MtrunA17_Chr8g0373821 33.951 162 90 5 300 454 364 515 5.97e-17 83.6
Msa0878380 MtrunA17_Chr5g0399801 32.338 201 107 8 300 477 894 1088 3.69e-16 81.6
Msa0878380 MtrunA17_Chr1g0163051 26.697 221 136 6 274 469 440 659 1.76e-15 79.3
Msa0878380 MtrunA17_Chr4g0003511 30.348 201 111 7 300 477 857 1051 4.45e-15 78.2
Msa0878380 MtrunA17_Chr4g0003501 30.151 199 112 6 300 477 762 954 8.27e-15 77.4
Msa0878380 MtrunA17_Chr1g0201311 30.769 182 95 6 287 454 36 200 4.20e-14 74.3
Msa0878380 MtrunA17_Chr2g0305371 28.899 218 122 9 265 480 288 474 1.01e-13 73.2
Msa0878380 MtrunA17_Chr1g0201621 30.055 183 97 6 287 455 36 201 1.25e-13 72.8
Msa0878380 MtrunA17_Chr8g0368901 28.182 220 131 9 274 468 551 768 2.48e-13 72.4
Msa0878380 MtrunA17_Chr1g0149581 30.128 156 91 6 326 477 1524 1665 5.22e-13 72.0
Msa0878380 MtrunA17_Chr6g0477001 28.037 214 127 8 274 480 63 256 2.19e-12 68.2
Msa0878380 MtrunA17_Chr1g0163041 27.404 208 123 7 276 457 361 566 3.91e-12 68.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0878380 AT3G03750.2 59.556 225 79 4 269 482 131 354 1.50e-79 252
Msa0878380 AT3G03750.2 33.871 124 67 3 25 138 28 146 2.48e-13 71.6
Msa0878380 AT3G03750.1 55.111 225 73 5 269 482 131 338 3.35e-68 222
Msa0878380 AT3G03750.1 33.871 124 67 3 25 138 28 146 2.03e-13 71.6
Msa0878380 AT1G04050.3 33.951 162 100 3 296 455 436 592 7.49e-20 93.2
Msa0878380 AT1G04050.2 33.951 162 100 3 296 455 540 696 1.36e-19 92.4
Msa0878380 AT1G04050.1 33.951 162 100 3 296 455 540 696 1.36e-19 92.4
Msa0878380 AT2G23740.1 33.514 185 111 5 300 477 1195 1374 2.72e-18 89.0
Msa0878380 AT2G23740.3 33.514 185 111 5 300 477 1202 1381 2.87e-18 89.0
Msa0878380 AT2G23740.6 33.514 185 111 5 300 477 1202 1381 2.87e-18 89.0
Msa0878380 AT2G23740.2 33.514 185 111 5 300 477 1202 1381 2.87e-18 89.0
Msa0878380 AT3G04380.6 31.720 186 109 6 299 473 252 430 2.33e-17 84.7
Msa0878380 AT3G04380.2 31.720 186 109 6 299 473 252 430 2.80e-17 84.7
Msa0878380 AT3G04380.1 31.720 186 109 6 299 473 279 457 3.00e-17 84.7
Msa0878380 AT3G04380.4 31.720 186 109 6 299 473 279 457 3.08e-17 84.7
Msa0878380 AT3G04380.5 31.720 186 109 6 299 473 236 414 3.10e-17 84.3
Msa0878380 AT3G04380.3 32.044 181 115 4 299 473 263 441 3.67e-17 84.3
Msa0878380 AT5G43990.8 31.447 159 101 3 299 455 458 610 1.52e-16 82.8
Msa0878380 AT5G43990.12 31.447 159 101 3 299 455 458 610 1.52e-16 82.8
Msa0878380 AT5G43990.6 31.447 159 101 3 299 455 458 610 1.52e-16 82.8
Msa0878380 AT5G43990.13 31.447 159 101 3 299 455 458 610 1.52e-16 82.8
Msa0878380 AT5G43990.7 31.447 159 101 3 299 455 438 590 1.75e-16 82.8
Msa0878380 AT1G73100.1 30.000 240 130 10 275 477 430 668 1.82e-16 82.8
Msa0878380 AT5G43990.3 31.447 159 101 3 299 455 527 679 2.68e-16 82.4
Msa0878380 AT5G43990.11 31.447 159 101 3 299 455 527 679 2.68e-16 82.4
Msa0878380 AT5G43990.1 31.447 159 101 3 299 455 527 679 2.68e-16 82.4
Msa0878380 AT5G43990.4 31.447 159 101 3 299 455 527 679 2.68e-16 82.4
Msa0878380 AT5G43990.9 31.447 159 101 3 299 455 550 702 3.02e-16 82.0
Msa0878380 AT5G43990.2 31.447 159 101 3 299 455 550 702 3.02e-16 82.0
Msa0878380 AT5G43990.16 31.447 159 101 3 299 455 507 659 3.16e-16 82.0
Msa0878380 AT5G43990.5 31.447 159 101 3 299 455 507 659 3.16e-16 82.0
Msa0878380 AT5G43990.17 31.447 159 101 3 299 455 507 659 3.16e-16 82.0
Msa0878380 AT5G43990.14 31.447 159 101 3 299 455 507 659 3.16e-16 82.0
Msa0878380 AT5G43990.15 31.447 159 101 3 299 455 530 682 3.27e-16 82.0
Msa0878380 AT5G43990.10 31.447 159 101 3 299 455 530 682 3.27e-16 82.0
Msa0878380 AT2G33290.1 28.182 220 129 7 276 469 435 651 3.68e-15 78.6
Msa0878380 AT2G33290.3 28.182 220 129 7 276 469 435 651 3.68e-15 78.6
Msa0878380 AT2G33290.4 28.182 220 129 7 276 469 435 651 3.68e-15 78.6
Msa0878380 AT2G33290.2 28.182 220 129 7 276 469 435 651 3.68e-15 78.6
Msa0878380 AT2G35160.2 27.234 235 133 8 259 477 581 793 5.54e-15 78.2
Msa0878380 AT2G35160.3 27.234 235 133 8 259 477 581 793 5.54e-15 78.2
Msa0878380 AT2G35160.1 27.234 235 133 8 259 477 581 793 5.54e-15 78.2
Msa0878380 AT2G35160.4 27.234 235 133 8 259 477 581 793 5.54e-15 78.2
Msa0878380 AT2G35160.5 27.234 235 133 8 259 477 545 757 5.88e-15 78.2
Msa0878380 AT1G76710.4 30.726 179 107 5 300 477 66 228 1.79e-14 76.3
Msa0878380 AT1G76710.2 30.726 179 107 5 300 477 66 228 1.88e-14 75.9
Msa0878380 AT1G76710.1 30.726 179 107 5 300 477 66 228 1.88e-14 75.9
Msa0878380 AT1G76710.3 30.726 179 107 5 300 477 66 228 2.14e-14 75.9
Msa0878380 AT4G13460.1 28.774 212 133 6 274 469 441 650 2.15e-14 76.3
Msa0878380 AT4G13460.2 28.774 212 133 6 274 469 441 650 2.15e-14 76.3
Msa0878380 AT4G30860.1 28.049 246 140 11 244 477 244 464 4.62e-14 74.7
Msa0878380 AT5G04940.2 27.953 254 141 11 264 477 418 669 2.46e-13 72.8
Msa0878380 AT5G04940.1 27.953 254 141 11 264 477 418 669 2.46e-13 72.8
Msa0878380 AT2G22740.2 32.143 168 99 5 300 454 594 759 1.41e-12 70.5
Msa0878380 AT2G22740.1 32.143 168 99 5 300 454 594 759 1.41e-12 70.5
Msa0878380 AT5G42400.7 30.769 143 83 6 335 477 1261 1387 8.40e-12 68.6
Msa0878380 AT5G42400.2 30.769 143 83 6 335 477 1261 1387 8.40e-12 68.6
Msa0878380 AT5G42400.8 30.769 143 83 6 335 477 1261 1387 8.40e-12 68.6
Msa0878380 AT5G42400.5 30.769 143 83 6 335 477 1261 1387 8.40e-12 68.6
Msa0878380 AT5G42400.4 30.769 143 83 6 335 477 1261 1387 8.40e-12 68.6
Msa0878380 AT5G42400.1 30.769 143 83 6 335 477 1261 1387 8.40e-12 68.6
Msa0878380 AT5G42400.3 30.769 143 83 6 335 477 1261 1387 8.40e-12 68.6
Msa0878380 AT5G42400.6 30.769 143 83 6 335 477 1261 1387 8.40e-12 68.6

Find 162 sgRNAs with CRISPR-Local

Find 276 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGGTTAGGTATGGTAGAATT+AGG 0.190335 6_1:-19289744 None:intergenic
AATGGGTCAGTGGGAGGTTG+TGG 0.204627 6_1:+19290069 Msa0878380:CDS
TTTGAAGGTGTTTGTGATAA+TGG 0.215244 6_1:+19290051 Msa0878380:CDS
TTTGGTGTTGGTTGTGAAAA+TGG 0.223430 6_1:+19290369 Msa0878380:CDS
AGCACCCCATGATTGATAAT+TGG 0.228954 6_1:-19289968 None:intergenic
GATGGGTCTGTGGGAGATGG+TGG 0.241518 6_1:+19290285 Msa0878380:CDS
ATGGGGTTTGTTTGCGAATC+AGG 0.258812 6_1:+19290656 Msa0878380:CDS
GTCAAAATGGGGTTAATGTT+AGG 0.261254 6_1:+19290601 Msa0878380:CDS
TCATCATCGTCAACCGTTCT+AGG 0.277286 6_1:-19290438 None:intergenic
GTGGGAGGGAGTGTGGTAAT+AGG 0.291477 6_1:+19290574 Msa0878380:CDS
GGTAATAGGGTGAGTCAAAA+TGG 0.309553 6_1:+19290588 Msa0878380:CDS
TGATGATTTGGGTGAGTTTA+CGG 0.314004 6_1:-19289807 None:intergenic
TGGACTATTCTCGAAGGTTC+TGG 0.314263 6_1:-19289854 None:intergenic
GGTGTGGTGGTGGGAAAGGA+TGG 0.325731 6_1:+19290637 Msa0878380:CDS
GTGGGTTGGGTTGTTTATGT+GGG 0.337627 6_1:+19290556 Msa0878380:CDS
AACATAGACGCAACAAGAAT+TGG 0.340854 6_1:+19292496 Msa0878380:CDS
TGCGACGAAGGGTGATGATT+TGG 0.341064 6_1:-19289819 None:intergenic
GCACCCCATGATTGATAATT+GGG 0.342582 6_1:-19289967 None:intergenic
GGTTAGGTATGGTAGAATTA+GGG 0.344253 6_1:-19289743 None:intergenic
ATTGCTACTACTCGATTTCC+TGG 0.350453 6_1:-19289665 None:intergenic
GGGTCAGTGGGAGGTTGTGG+GGG 0.351533 6_1:+19290072 Msa0878380:CDS
TGTGGGTTGGGTTGTTTATG+TGG 0.352457 6_1:+19290555 Msa0878380:CDS
TGCAGCAGCCCTTCTTGCCT+TGG 0.352641 6_1:+19292703 Msa0878380:CDS
GGGTCTGTGGGAGATGGTGG+GGG 0.359874 6_1:+19290288 Msa0878380:CDS
TGGGTCTGTGGGAGATGGTG+GGG 0.360670 6_1:+19290287 Msa0878380:CDS
TTGTTGATGGTGTTGAGAAA+TGG 0.363547 6_1:-19289880 None:intergenic
ATTGGAAGAGAGTGTGGGTT+GGG 0.372465 6_1:+19290543 Msa0878380:CDS
ACGGAGTGATTTACATGTTA+AGG 0.372858 6_1:-19289788 None:intergenic
ATGGGTCAGTGGGAGGTTGT+GGG 0.374421 6_1:+19290070 Msa0878380:CDS
TTGAAGGTGTTTGTGATAAT+GGG 0.374671 6_1:+19290052 Msa0878380:CDS
TGGCAAGTTGTGTGTGGGTT+AGG 0.379336 6_1:-19289759 None:intergenic
TGGGTCAGTGGGAGGTTGTG+GGG 0.384730 6_1:+19290071 Msa0878380:CDS
TCATCATTGGGTGGTGGTGG+TGG 0.385071 6_1:-19290120 None:intergenic
TGGGAAGGTGGGAGGTGATG+GGG 0.385269 6_1:+19290389 Msa0878380:CDS
AATGGGAAGGTGGGAGGTGA+TGG 0.388316 6_1:+19290387 Msa0878380:CDS
GGGAAGGTGGGAGGTGATGG+GGG 0.389431 6_1:+19290390 Msa0878380:CDS
TCAACCGTTCTAGGCGGAAT+TGG 0.392353 6_1:-19290429 None:intergenic
CGCATGAATGATTTACAAAC+CGG 0.393320 6_1:-19292528 None:intergenic
AATTCTGTCATTTCAGATGA+TGG 0.394308 6_1:+19290000 Msa0878380:CDS
ATGGGTCTGTGGGAGATGGT+GGG 0.396576 6_1:+19290286 Msa0878380:CDS
ATGTTAGGGTTAAGATTGTA+TGG 0.402236 6_1:+19290616 Msa0878380:CDS
GATGATGAGTCGGTGAGTTT+TGG 0.402425 6_1:+19290453 Msa0878380:CDS
TTTGATGGGGTTGATGGTAT+TGG 0.404345 6_1:+19290525 Msa0878380:CDS
ACTCACTGACCCATCATCAT+TGG 0.404460 6_1:-19290133 None:intergenic
GTGTGGTGGTGGGAAAGGAT+GGG 0.406058 6_1:+19290638 Msa0878380:CDS
TGTGGTGGTGGGAAAGGATG+GGG 0.412443 6_1:+19290639 Msa0878380:CDS
GTAATAGGGTGAGTCAAAAT+GGG 0.414284 6_1:+19290589 Msa0878380:CDS
AAGGTGTATGTGATGATGGT+GGG 0.415438 6_1:+19290172 Msa0878380:CDS
TGGGAGGGAGTGTGGTAATA+GGG 0.418711 6_1:+19290575 Msa0878380:CDS
GTGTAGAGAAAGTAGGAGTA+AGG 0.418816 6_1:-19289916 None:intergenic
AAGATTGTATGGTGTGGTGG+TGG 0.420334 6_1:+19290627 Msa0878380:CDS
ATTCCGCCGGTTGATGAAGT+TGG 0.420784 6_1:+19290216 Msa0878380:CDS
GATGATGGGTCAGTGAGTTT+TGG 0.420958 6_1:+19290138 Msa0878380:CDS
TGTTTATGTGGGAGGGAGTG+TGG 0.424996 6_1:+19290567 Msa0878380:CDS
TTCCGCCGGTTGATGAAGTT+GGG 0.426029 6_1:+19290217 Msa0878380:CDS
TGTTGATGGTGTTGAGAAAT+GGG 0.426613 6_1:-19289879 None:intergenic
CAAGAATTGGAAACGTTGCC+CGG 0.432187 6_1:+19292509 Msa0878380:CDS
TCATTGGGTGGTGGTGGTGG+TGG 0.432692 6_1:-19290117 None:intergenic
TCAAAATGGGGTTAATGTTA+GGG 0.434140 6_1:+19290602 Msa0878380:CDS
GAAGTTGGGCCGGTGAGTTT+TGG 0.436292 6_1:+19290231 Msa0878380:CDS
CCATCATCATTGGGTGGTGG+TGG 0.438060 6_1:-19290123 None:intergenic
ACAACAACATTATGATGAAC+TGG 0.439102 6_1:+19292396 Msa0878380:CDS
CCACCACCACCCAATGATGA+TGG 0.443523 6_1:+19290123 Msa0878380:CDS
GTTGGGTTGTTTATGTGGGA+GGG 0.444408 6_1:+19290560 Msa0878380:CDS
ACCGGCCCAACTTCATCAAC+CGG 0.447528 6_1:-19290222 None:intergenic
ATGGGAAGGTGGGAGGTGAT+GGG 0.449835 6_1:+19290388 Msa0878380:CDS
GATGATGGGTCGGTGAGATT+TGG 0.451262 6_1:+19290015 Msa0878380:CDS
GATGATGGATCGGTGAGATT+TGG 0.454702 6_1:+19290351 Msa0878380:CDS
ATGAGATGATGATGGGGAGG+GGG 0.456174 6_1:+19292787 Msa0878380:three_prime_UTR
GCGACGAAGGGTGATGATTT+GGG 0.460306 6_1:-19289818 None:intergenic
TGAAGGTGTGTAGAGAAAGT+AGG 0.466495 6_1:-19289923 None:intergenic
GTATGGTGTGGTGGTGGGAA+AGG 0.470460 6_1:+19290633 Msa0878380:CDS
ACAAAGCTAGTCAGAAGTAC+AGG 0.473427 6_1:+19292568 Msa0878380:CDS
TTTCAAGGTGTATGTGATGA+TGG 0.478220 6_1:+19290267 Msa0878380:CDS
CTCAAACATGCCTTTCCTGA+TGG 0.478841 6_1:-19292469 None:intergenic
GATGATGGGTCTGTGGGAGA+TGG 0.479549 6_1:+19290282 Msa0878380:CDS
GGTTGGGTTGTTTATGTGGG+AGG 0.481940 6_1:+19290559 Msa0878380:CDS
GCAGTGACACAGCCGCCCAT+TGG 0.484176 6_1:-19292683 None:intergenic
GTAAGGGAACATCTTCCATC+AGG 0.484888 6_1:+19292454 Msa0878380:CDS
GATTTCCTGGGAATCTTCAT+CGG 0.485473 6_1:-19289652 None:intergenic
TTGGTGTTGGTTGTGAAAAT+GGG 0.487055 6_1:+19290370 Msa0878380:CDS
CCATCATCATCGATCGCTCT+AGG 0.487815 6_1:-19290336 None:intergenic
TAGAGAAAGTAGGAGTAAGG+AGG 0.488395 6_1:-19289913 None:intergenic
GAGTTCTTGTTTCAATATGC+AGG 0.491591 6_1:+19290693 Msa0878380:CDS
TTTACATGTTAAGGAGATGT+TGG 0.491846 6_1:-19289779 None:intergenic
CTCACTGACCCATCATCATT+GGG 0.494642 6_1:-19290132 None:intergenic
TGAGATGATGATGGGGAGGG+GGG 0.503274 6_1:+19292788 Msa0878380:three_prime_UTR
AGAGAAAGTAGGAGTAAGGA+GGG 0.510073 6_1:-19289912 None:intergenic
AACTTTCAAGTGTCTTCTGA+GGG 0.512350 6_1:-19292733 None:intergenic
CAACTTTCAAGTGTCTTCTG+AGG 0.513305 6_1:-19292734 None:intergenic
AATTATCAATCATGGGGTGC+TGG 0.513455 6_1:+19289970 Msa0878380:CDS
GAATCAGGTTGTTCGTAAAG+AGG 0.515528 6_1:+19290671 Msa0878380:CDS
GCCGGTTGATGAAGTTGGGC+CGG 0.518021 6_1:+19290221 Msa0878380:CDS
GGCAATGTTCCAAGGCAAGA+AGG 0.521194 6_1:-19292712 None:intergenic
ATTCTGTCATTTCAGATGAT+GGG 0.526380 6_1:+19290001 Msa0878380:CDS
AGTAATTTCACTAATTCCGC+CGG 0.536149 6_1:+19290203 Msa0878380:CDS
CAATCATGGGGTGCTGGAGA+GGG 0.536498 6_1:+19289976 Msa0878380:CDS
TCAATCATGGGGTGCTGGAG+AGG 0.538735 6_1:+19289975 Msa0878380:CDS
TGTGAAGGTGTATGTGATGA+TGG 0.541227 6_1:+19290168 Msa0878380:CDS
AATGAGATGATGATGGGGAG+GGG 0.543018 6_1:+19292786 Msa0878380:three_prime_UTR
CCTAGAGCGATCGATGATGA+TGG 0.545116 6_1:+19290336 Msa0878380:CDS
TGGTTGTGAAAATGGGAAGG+TGG 0.545226 6_1:+19290377 Msa0878380:CDS
TTGTCTCCTCTGTGCTTCTG+TGG 0.546997 6_1:-19292377 None:intergenic
GGTTGTGAAAATGGGAAGGT+GGG 0.549690 6_1:+19290378 Msa0878380:CDS
AGTTGTGTGTGGGTTAGGTA+TGG 0.551401 6_1:-19289754 None:intergenic
TTTGTAAATCATTCATGCGA+TGG 0.552323 6_1:+19292532 Msa0878380:CDS
GTTAAGATTGTATGGTGTGG+TGG 0.553358 6_1:+19290624 Msa0878380:CDS
GGATCGGTGAGATTTGGTGT+TGG 0.554300 6_1:+19290357 Msa0878380:CDS
TTCACCAATTCCGCCTAGAA+CGG 0.555345 6_1:+19290425 Msa0878380:CDS
CCACACCGATGAAGATTCCC+AGG 0.559732 6_1:+19289647 None:intergenic
ATGGTGTTGAGAAATGGGAT+TGG 0.561886 6_1:-19289874 None:intergenic
AGATGTTGGCAAGTTGTGTG+TGG 0.562457 6_1:-19289765 None:intergenic
TAATGAGATGATGATGGGGA+GGG 0.565437 6_1:+19292785 Msa0878380:three_prime_UTR
GCAATGTTCCAAGGCAAGAA+GGG 0.567672 6_1:-19292711 None:intergenic
CTCGAAGGTTCTGGAAGCGT+CGG 0.570963 6_1:-19289845 None:intergenic
GTTTGTGATAATGGGTCAGT+GGG 0.571580 6_1:+19290060 Msa0878380:CDS
GAAGGTGTATGTGATGATGG+TGG 0.577633 6_1:+19290171 Msa0878380:CDS
TGTGATAATGGGTCAGTGGG+AGG 0.578136 6_1:+19290063 Msa0878380:CDS
CACCACCACCCAATGATGAT+GGG 0.581008 6_1:+19290124 Msa0878380:CDS
AGGTGTATGTGATGATGGTG+GGG 0.581502 6_1:+19290173 Msa0878380:CDS
ATGGTATTGGAAGAGAGTGT+GGG 0.581994 6_1:+19290538 Msa0878380:CDS
TGTGAAAATGGGAAGGTGGG+AGG 0.582238 6_1:+19290381 Msa0878380:CDS
TATTGGAAGAGAGTGTGGGT+TGG 0.583102 6_1:+19290542 Msa0878380:CDS
GATGGTATTGGAAGAGAGTG+TGG 0.584769 6_1:+19290537 Msa0878380:CDS
GTATGTGATGATGGGTCTGT+GGG 0.586844 6_1:+19290276 Msa0878380:CDS
GACCCATCATCATTGGGTGG+TGG 0.588319 6_1:-19290126 None:intergenic
AGGGTTAAGATTGTATGGTG+TGG 0.589173 6_1:+19290621 Msa0878380:CDS
CTTCTGAGGGCAATGTTCCA+AGG 0.591471 6_1:-19292720 None:intergenic
AGATTGTATGGTGTGGTGGT+GGG 0.598218 6_1:+19290628 Msa0878380:CDS
GTAAATCATTCATGCGATGG+TGG 0.599638 6_1:+19292535 Msa0878380:CDS
TGTATGTGATGATGGGTCTG+TGG 0.599715 6_1:+19290275 Msa0878380:CDS
GATGTTGGCAAGTTGTGTGT+GGG 0.600318 6_1:-19289764 None:intergenic
TTCAAGGTGTATGTGATGAT+GGG 0.600792 6_1:+19290268 Msa0878380:CDS
AACGGTTGACGATGATGAGT+CGG 0.604298 6_1:+19290443 Msa0878380:CDS
TTGCTACTACTCGATTTCCT+GGG 0.606210 6_1:-19289664 None:intergenic
AGCGATCGATGATGATGGAT+CGG 0.610413 6_1:+19290341 Msa0878380:CDS
TTAATGAGATGATGATGGGG+AGG 0.612126 6_1:+19292784 Msa0878380:three_prime_UTR
CACCCCATGATTGATAATTG+GGG 0.614033 6_1:-19289966 None:intergenic
ACTTGAAAGTTGAAACATGT+AGG 0.614206 6_1:+19292745 Msa0878380:exon
AGCGTCGGAGATGCGACGAA+GGG 0.615193 6_1:-19289830 None:intergenic
TATGATGAACTGGCATCGCG+TGG 0.618128 6_1:+19292406 Msa0878380:CDS
GGAACATCTTCCATCAGGAA+AGG 0.618170 6_1:+19292459 Msa0878380:CDS
AAGCGTCGGAGATGCGACGA+AGG 0.618413 6_1:-19289831 None:intergenic
TGTCATTTCAGATGATGGGT+CGG 0.619359 6_1:+19290005 Msa0878380:CDS
TGTTGGTTGTGAAAATGGGA+AGG 0.619618 6_1:+19290374 Msa0878380:CDS
GGTGTATGTGATGATGGTGG+GGG 0.621180 6_1:+19290174 Msa0878380:CDS
GAAGCAAAGAAGCAAAGGCG+AGG 0.623414 6_1:-19292601 None:intergenic
AAGCAAAGAAGCAAAGGCGA+GGG 0.631296 6_1:-19292600 None:intergenic
TGGGATTGGACTATTCTCGA+AGG 0.643563 6_1:-19289860 None:intergenic
GGTGTGGGATGTGAATGTGA+AGG 0.645385 6_1:+19290474 Msa0878380:CDS
CATCCAACACCAAAACTCAC+CGG 0.646120 6_1:-19290240 None:intergenic
AGGAAATCGAGTAGTAGCAA+TGG 0.649367 6_1:+19289667 Msa0878380:CDS
TAATAGGGTGAGTCAAAATG+GGG 0.652968 6_1:+19290590 Msa0878380:CDS
ACCCCATGATTGATAATTGG+GGG 0.668281 6_1:-19289965 None:intergenic
GCATGAATGATTTACAAACC+GGG 0.668682 6_1:-19292527 None:intergenic
GGCCCAACTTCATCAACCGG+CGG 0.669512 6_1:-19290219 None:intergenic
TGTTTGTGATAATGGGTCAG+TGG 0.672547 6_1:+19290059 Msa0878380:CDS
TCATCGTCAACCGTTCTAGG+CGG 0.674847 6_1:-19290435 None:intergenic
TCATCATCGATCGCTCTAGG+CGG 0.687513 6_1:-19290333 None:intergenic
ACTGACCCATCATCATTGGG+TGG 0.691898 6_1:-19290129 None:intergenic
TTGTGAGACAGAATGAGTGA+AGG 0.699544 6_1:-19289940 None:intergenic
TGACAACCACAGAAGCACAG+AGG 0.762571 6_1:+19292371 Msa0878380:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! GAATTTTGTATTTAATTTTT+AGG + chr6_1:19291161-19291180 Msa0878380:intron 10.0%
!!! GATCAATTCTAAAATTTTAA+TGG - chr6_1:19290946-19290965 None:intergenic 15.0%
!! ATGTAAAAAAATTACTTTCT+AGG + chr6_1:19291645-19291664 Msa0878380:intron 15.0%
!!! TGAATTTAAGTTAGTATATA+AGG + chr6_1:19291814-19291833 Msa0878380:intron 15.0%
!!! TTTGATATTTTGACTAATAT+AGG + chr6_1:19291841-19291860 Msa0878380:intron 15.0%
!!! TTGATATTTTGACTAATATA+GGG + chr6_1:19291842-19291861 Msa0878380:intron 15.0%
!! AAACTTAATATTTCACTCAA+GGG - chr6_1:19291532-19291551 None:intergenic 20.0%
!! TCTTAACAAGCTAATAATTA+GGG - chr6_1:19291580-19291599 None:intergenic 20.0%
!! ATCTTAACAAGCTAATAATT+AGG - chr6_1:19291581-19291600 None:intergenic 20.0%
!! AATCCATAATATAAACTACT+TGG + chr6_1:19291786-19291805 Msa0878380:intron 20.0%
!! TTATCAAATATGAGTCTATT+TGG + chr6_1:19291913-19291932 Msa0878380:intron 20.0%
!!! AATAAGTTGAAAACAACTTA+TGG - chr6_1:19292009-19292028 None:intergenic 20.0%
!!! ACATGTAGGAATTTTTATTT+TGG + chr6_1:19292759-19292778 Msa0878380:three_prime_UTR 20.0%
!!! AGTGTATGTGTTTTTTTGAT+GGG + chr6_1:19290511-19290530 Msa0878380:CDS 25.0%
! GTGATTGTTTGATTGATTAT+AGG + chr6_1:19290748-19290767 Msa0878380:intron 25.0%
! TGATTATAGGATTGTAACAT+TGG + chr6_1:19290761-19290780 Msa0878380:intron 25.0%
!!! TTTTAGAATTGATCCGAATT+CGG + chr6_1:19290952-19290971 Msa0878380:intron 25.0%
! ATGATAAACCAGAAAATACT+TGG - chr6_1:19291369-19291388 None:intergenic 25.0%
!!! GTATTTTCTGGTTTATCATA+TGG + chr6_1:19291370-19291389 Msa0878380:intron 25.0%
! CAAACTTAATATTTCACTCA+AGG - chr6_1:19291533-19291552 None:intergenic 25.0%
!!! TTATTAGCTTGTTAAGATGA+CGG + chr6_1:19291583-19291602 Msa0878380:intron 25.0%
! CAAATTGCAATATGTTAAGT+AGG + chr6_1:19291754-19291773 Msa0878380:intron 25.0%
! AGTCCAAGTAGTTTATATTA+TGG - chr6_1:19291792-19291811 None:intergenic 25.0%
!!! TTTGTTTTCATAAGCTGTTT+CGG - chr6_1:19292044-19292063 None:intergenic 25.0%
!! CTTTAGTTCATATGCATATA+TGG - chr6_1:19292180-19292199 None:intergenic 25.0%
!!! TTTAGTTGTGTTTTTATGCA+TGG + chr6_1:19292279-19292298 Msa0878380:intron 25.0%
!! AATTTTACAAGCATTTGTGT+GGG - chr6_1:19292318-19292337 None:intergenic 25.0%
!! TAATTTTACAAGCATTTGTG+TGG - chr6_1:19292319-19292338 None:intergenic 25.0%
TTTACATGTTAAGGAGATGT+TGG - chr6_1:19289782-19289801 None:intergenic 30.0%
! AATTCTGTCATTTCAGATGA+TGG + chr6_1:19290000-19290019 Msa0878380:CDS 30.0%
! ATTCTGTCATTTCAGATGAT+GGG + chr6_1:19290001-19290020 Msa0878380:CDS 30.0%
!! TTTGAAGGTGTTTGTGATAA+TGG + chr6_1:19290051-19290070 Msa0878380:CDS 30.0%
!! TTGAAGGTGTTTGTGATAAT+GGG + chr6_1:19290052-19290071 Msa0878380:CDS 30.0%
!!! GAGTGTATGTGTTTTTTTGA+TGG + chr6_1:19290510-19290529 Msa0878380:CDS 30.0%
!!! GTGTATGTGTTTTTTTGATG+GGG + chr6_1:19290512-19290531 Msa0878380:CDS 30.0%
TCAAAATGGGGTTAATGTTA+GGG + chr6_1:19290602-19290621 Msa0878380:CDS 30.0%
ATGTTAGGGTTAAGATTGTA+TGG + chr6_1:19290616-19290635 Msa0878380:CDS 30.0%
!! AATTGATTTGAACTTGAACG+TGG + chr6_1:19290817-19290836 Msa0878380:intron 30.0%
!!! GTGTTTTTGTGTTTTAGAGT+TGG + chr6_1:19290910-19290929 Msa0878380:intron 30.0%
! CATCAGATTATTCACGTTTT+TGG - chr6_1:19291276-19291295 None:intergenic 30.0%
ATTTGTTCTACTTGAGAATG+TGG - chr6_1:19291473-19291492 None:intergenic 30.0%
TTAATATTTCACTCAAGGGA+AGG - chr6_1:19291528-19291547 None:intergenic 30.0%
TATAGTAGGAACATGTCTTT+GGG + chr6_1:19291696-19291715 Msa0878380:intron 30.0%
GACTAATATAGGGAATTGAA+AGG + chr6_1:19291852-19291871 Msa0878380:intron 30.0%
! TTTGCTATGTTAAGGTGATT+GGG + chr6_1:19292236-19292255 Msa0878380:intron 30.0%
! ATTTTACAAGCATTTGTGTG+GGG - chr6_1:19292317-19292336 None:intergenic 30.0%
ATGCTTGTAAAATTAATCCG+CGG + chr6_1:19292324-19292343 Msa0878380:intron 30.0%
ACAACAACATTATGATGAAC+TGG + chr6_1:19292396-19292415 Msa0878380:CDS 30.0%
! ATCTGCTCTTTTAGTAGTAA+GGG + chr6_1:19292438-19292457 Msa0878380:CDS 30.0%
TTTGTAAATCATTCATGCGA+TGG + chr6_1:19292532-19292551 Msa0878380:CDS 30.0%
AAATCAGGAAAAAGTCCAAT+GGG + chr6_1:19292668-19292687 Msa0878380:CDS 30.0%
ACTTGAAAGTTGAAACATGT+AGG + chr6_1:19292745-19292764 Msa0878380:exon 30.0%
!!! TGGTTTTAATGAGATGATGA+TGG + chr6_1:19292779-19292798 Msa0878380:three_prime_UTR 30.0%
!! GGTTTTAATGAGATGATGAT+GGG + chr6_1:19292780-19292799 Msa0878380:three_prime_UTR 30.0%
!! GTTTTAATGAGATGATGATG+GGG + chr6_1:19292781-19292800 Msa0878380:three_prime_UTR 30.0%
GGTTAGGTATGGTAGAATTA+GGG - chr6_1:19289746-19289765 None:intergenic 35.0%
ACGGAGTGATTTACATGTTA+AGG - chr6_1:19289791-19289810 None:intergenic 35.0%
! TGATGATTTGGGTGAGTTTA+CGG - chr6_1:19289810-19289829 None:intergenic 35.0%
!! TGTTGATGGTGTTGAGAAAT+GGG - chr6_1:19289882-19289901 None:intergenic 35.0%
!! TTGTTGATGGTGTTGAGAAA+TGG - chr6_1:19289883-19289902 None:intergenic 35.0%
!!! GGTGTTGATTGTGATTTTGA+AGG + chr6_1:19290036-19290055 Msa0878380:CDS 35.0%
AGTAATTTCACTAATTCCGC+CGG + chr6_1:19290203-19290222 Msa0878380:CDS 35.0%
!! GGTGTTGGATGTAATTTTCA+AGG + chr6_1:19290252-19290271 Msa0878380:CDS 35.0%
TTTCAAGGTGTATGTGATGA+TGG + chr6_1:19290267-19290286 Msa0878380:CDS 35.0%
TTCAAGGTGTATGTGATGAT+GGG + chr6_1:19290268-19290287 Msa0878380:CDS 35.0%
!! TTTGGTGTTGGTTGTGAAAA+TGG + chr6_1:19290369-19290388 Msa0878380:CDS 35.0%
!! TTGGTGTTGGTTGTGAAAAT+GGG + chr6_1:19290370-19290389 Msa0878380:CDS 35.0%
!!! TGTTTTTTTGATGGGGTTGA+TGG + chr6_1:19290519-19290538 Msa0878380:CDS 35.0%
GTAATAGGGTGAGTCAAAAT+GGG + chr6_1:19290589-19290608 Msa0878380:CDS 35.0%
TAATAGGGTGAGTCAAAATG+GGG + chr6_1:19290590-19290609 Msa0878380:CDS 35.0%
GTCAAAATGGGGTTAATGTT+AGG + chr6_1:19290601-19290620 Msa0878380:CDS 35.0%
! GAGTTCTTGTTTCAATATGC+AGG + chr6_1:19290693-19290712 Msa0878380:CDS 35.0%
TTGAACTTGAACGTGGAATT+TGG + chr6_1:19290824-19290843 Msa0878380:intron 35.0%
GAAATCATAACGTGCTTGTT+TGG + chr6_1:19291005-19291024 Msa0878380:intron 35.0%
GTGCTTGTTTGGATATATGT+TGG + chr6_1:19291016-19291035 Msa0878380:intron 35.0%
! ACCAGAAAATACTTGGTGAT+CGG - chr6_1:19291362-19291381 None:intergenic 35.0%
TGGCAATTGAAAATGTACAG+TGG - chr6_1:19291496-19291515 None:intergenic 35.0%
! TTGTTAAGATGACGGTCTAT+AGG + chr6_1:19291591-19291610 Msa0878380:intron 35.0%
!! TTCTAGGTGCTCTAAGAAAT+TGG + chr6_1:19291661-19291680 Msa0878380:intron 35.0%
!! TCTAGGTGCTCTAAGAAATT+GGG + chr6_1:19291662-19291681 Msa0878380:intron 35.0%
!! GGGAGGTTTTATACTATAGT+AGG + chr6_1:19291682-19291701 Msa0878380:intron 35.0%
CTATAGTAGGAACATGTCTT+TGG + chr6_1:19291695-19291714 Msa0878380:intron 35.0%
! ATTGATTTCGCCTTCTATGT+GGG - chr6_1:19291731-19291750 None:intergenic 35.0%
! AATTGATTTCGCCTTCTATG+TGG - chr6_1:19291732-19291751 None:intergenic 35.0%
!! TTGATAATGTCACCATCTCA+GGG - chr6_1:19291900-19291919 None:intergenic 35.0%
!! TTTGATAATGTCACCATCTC+AGG - chr6_1:19291901-19291920 None:intergenic 35.0%
! TATGCATATATGGCTCTGTT+TGG - chr6_1:19292170-19292189 None:intergenic 35.0%
!! GTTTGCTATGTTAAGGTGAT+TGG + chr6_1:19292235-19292254 Msa0878380:intron 35.0%
! CATCTGCTCTTTTAGTAGTA+AGG + chr6_1:19292437-19292456 Msa0878380:CDS 35.0%
AACATAGACGCAACAAGAAT+TGG + chr6_1:19292496-19292515 Msa0878380:CDS 35.0%
GCATGAATGATTTACAAACC+GGG - chr6_1:19292530-19292549 None:intergenic 35.0%
CGCATGAATGATTTACAAAC+CGG - chr6_1:19292531-19292550 None:intergenic 35.0%
!!! CTTTTGAAGCAAAGAAGCAA+AGG - chr6_1:19292609-19292628 None:intergenic 35.0%
! AAGCAAGCTCTTCATCTTTT+TGG - chr6_1:19292636-19292655 None:intergenic 35.0%
!! CTTTTAGCTATGGAGAAATC+AGG + chr6_1:19292653-19292672 Msa0878380:CDS 35.0%
GAAATCAGGAAAAAGTCCAA+TGG + chr6_1:19292667-19292686 Msa0878380:CDS 35.0%
! AACTTTCAAGTGTCTTCTGA+GGG - chr6_1:19292736-19292755 None:intergenic 35.0%
TTGCTACTACTCGATTTCCT+GGG - chr6_1:19289667-19289686 None:intergenic 40.0%
ATTGCTACTACTCGATTTCC+TGG - chr6_1:19289668-19289687 None:intergenic 40.0%
AGGAAATCGAGTAGTAGCAA+TGG + chr6_1:19289667-19289686 Msa0878380:CDS 40.0%
GGGTTAGGTATGGTAGAATT+AGG - chr6_1:19289747-19289766 None:intergenic 40.0%
! ATGGTGTTGAGAAATGGGAT+TGG - chr6_1:19289877-19289896 None:intergenic 40.0%
! AGGGTTGTTGTTGTTGTTGA+TGG - chr6_1:19289896-19289915 None:intergenic 40.0%
AGAGAAAGTAGGAGTAAGGA+GGG - chr6_1:19289915-19289934 None:intergenic 40.0%
TAGAGAAAGTAGGAGTAAGG+AGG - chr6_1:19289916-19289935 None:intergenic 40.0%
GTGTAGAGAAAGTAGGAGTA+AGG - chr6_1:19289919-19289938 None:intergenic 40.0%
! TGAAGGTGTGTAGAGAAAGT+AGG - chr6_1:19289926-19289945 None:intergenic 40.0%
TTGTGAGACAGAATGAGTGA+AGG - chr6_1:19289943-19289962 None:intergenic 40.0%
ACACCCCCAATTATCAATCA+TGG + chr6_1:19289962-19289981 Msa0878380:CDS 40.0%
CACCCCCAATTATCAATCAT+GGG + chr6_1:19289963-19289982 Msa0878380:CDS 40.0%
ACCCCCAATTATCAATCATG+GGG + chr6_1:19289964-19289983 Msa0878380:CDS 40.0%
! ACCCCATGATTGATAATTGG+GGG - chr6_1:19289968-19289987 None:intergenic 40.0%
! CACCCCATGATTGATAATTG+GGG - chr6_1:19289969-19289988 None:intergenic 40.0%
! GCACCCCATGATTGATAATT+GGG - chr6_1:19289970-19289989 None:intergenic 40.0%
! AGCACCCCATGATTGATAAT+TGG - chr6_1:19289971-19289990 None:intergenic 40.0%
AATTATCAATCATGGGGTGC+TGG + chr6_1:19289970-19289989 Msa0878380:CDS 40.0%
!! TGTCATTTCAGATGATGGGT+CGG + chr6_1:19290005-19290024 Msa0878380:CDS 40.0%
!! TGTTTGTGATAATGGGTCAG+TGG + chr6_1:19290059-19290078 Msa0878380:CDS 40.0%
!! GTTTGTGATAATGGGTCAGT+GGG + chr6_1:19290060-19290079 Msa0878380:CDS 40.0%
!!! AGTTTTGGTGATGGATGTGA+AGG + chr6_1:19290153-19290172 Msa0878380:CDS 40.0%
! TGTGAAGGTGTATGTGATGA+TGG + chr6_1:19290168-19290187 Msa0878380:CDS 40.0%
!! AAGGTGTATGTGATGATGGT+GGG + chr6_1:19290172-19290191 Msa0878380:CDS 40.0%
! TGTTGGTTGTGAAAATGGGA+AGG + chr6_1:19290374-19290393 Msa0878380:CDS 40.0%
!! TTTGATGGGGTTGATGGTAT+TGG + chr6_1:19290525-19290544 Msa0878380:CDS 40.0%
! ATGGTATTGGAAGAGAGTGT+GGG + chr6_1:19290538-19290557 Msa0878380:CDS 40.0%
GGTAATAGGGTGAGTCAAAA+TGG + chr6_1:19290588-19290607 Msa0878380:CDS 40.0%
AGGGTTAAGATTGTATGGTG+TGG + chr6_1:19290621-19290640 Msa0878380:CDS 40.0%
GTTAAGATTGTATGGTGTGG+TGG + chr6_1:19290624-19290643 Msa0878380:CDS 40.0%
! GAATCAGGTTGTTCGTAAAG+AGG + chr6_1:19290671-19290690 Msa0878380:CDS 40.0%
AACTTGAACGTGGAATTTGG+AGG + chr6_1:19290827-19290846 Msa0878380:intron 40.0%
CTAAATTCCAGCTCCGAATT+CGG - chr6_1:19290968-19290987 None:intergenic 40.0%
! TCCGATCACCAAGTATTTTC+TGG + chr6_1:19291358-19291377 Msa0878380:intron 40.0%
GAATCATACCAACACGTTGT+TGG - chr6_1:19291411-19291430 None:intergenic 40.0%
TCAAGGGAAGGTTGTCAAAA+TGG - chr6_1:19291516-19291535 None:intergenic 40.0%
!! GTTTTAGCAACCCACATAGA+AGG + chr6_1:19291718-19291737 Msa0878380:intron 40.0%
! TGATAATGTCACCATCTCAG+GGG - chr6_1:19291899-19291918 None:intergenic 40.0%
!! AAGCTCTTCTGAGACTGTTT+GGG + chr6_1:19291965-19291984 Msa0878380:intron 40.0%
GATTGATAGAAACTACCTCC+TGG + chr6_1:19292211-19292230 Msa0878380:intron 40.0%
TTAACATAGCAAACACCAGG+AGG - chr6_1:19292229-19292248 None:intergenic 40.0%
!! TCCTGGTGTTTGCTATGTTA+AGG + chr6_1:19292228-19292247 Msa0878380:intron 40.0%
ACCTTAACATAGCAAACACC+AGG - chr6_1:19292232-19292251 None:intergenic 40.0%
GTAAATCATTCATGCGATGG+TGG + chr6_1:19292535-19292554 Msa0878380:CDS 40.0%
! ACAAAGCTAGTCAGAAGTAC+AGG + chr6_1:19292568-19292587 Msa0878380:CDS 40.0%
!! GAAGAGCTTGCTTTTAGCTA+TGG + chr6_1:19292643-19292662 Msa0878380:CDS 40.0%
! CAACTTTCAAGTGTCTTCTG+AGG - chr6_1:19292737-19292756 None:intergenic 40.0%
!! TTAATGAGATGATGATGGGG+AGG + chr6_1:19292784-19292803 Msa0878380:three_prime_UTR 40.0%
!! TAATGAGATGATGATGGGGA+GGG + chr6_1:19292785-19292804 Msa0878380:three_prime_UTR 40.0%
!! AGTTGTGTGTGGGTTAGGTA+TGG - chr6_1:19289757-19289776 None:intergenic 45.0%
GATGTTGGCAAGTTGTGTGT+GGG - chr6_1:19289767-19289786 None:intergenic 45.0%
AGATGTTGGCAAGTTGTGTG+TGG - chr6_1:19289768-19289787 None:intergenic 45.0%
TGGACTATTCTCGAAGGTTC+TGG - chr6_1:19289857-19289876 None:intergenic 45.0%
TGGGATTGGACTATTCTCGA+AGG - chr6_1:19289863-19289882 None:intergenic 45.0%
CTCACTGACCCATCATCATT+GGG - chr6_1:19290135-19290154 None:intergenic 45.0%
ACTCACTGACCCATCATCAT+TGG - chr6_1:19290136-19290155 None:intergenic 45.0%
!!! GATGATGGGTCAGTGAGTTT+TGG + chr6_1:19290138-19290157 Msa0878380:CDS 45.0%
!! GAAGGTGTATGTGATGATGG+TGG + chr6_1:19290171-19290190 Msa0878380:CDS 45.0%
!! AGGTGTATGTGATGATGGTG+GGG + chr6_1:19290173-19290192 Msa0878380:CDS 45.0%
CATCCAACACCAAAACTCAC+CGG - chr6_1:19290243-19290262 None:intergenic 45.0%
!! TGTATGTGATGATGGGTCTG+TGG + chr6_1:19290275-19290294 Msa0878380:CDS 45.0%
!! GTATGTGATGATGGGTCTGT+GGG + chr6_1:19290276-19290295 Msa0878380:CDS 45.0%
!! AGCGATCGATGATGATGGAT+CGG + chr6_1:19290341-19290360 Msa0878380:CDS 45.0%
!! GATGATGGATCGGTGAGATT+TGG + chr6_1:19290351-19290370 Msa0878380:CDS 45.0%
TGGTTGTGAAAATGGGAAGG+TGG + chr6_1:19290377-19290396 Msa0878380:CDS 45.0%
GGTTGTGAAAATGGGAAGGT+GGG + chr6_1:19290378-19290397 Msa0878380:CDS 45.0%
TTCACCAATTCCGCCTAGAA+CGG + chr6_1:19290425-19290444 Msa0878380:CDS 45.0%
TCATCATCGTCAACCGTTCT+AGG - chr6_1:19290441-19290460 None:intergenic 45.0%
AACGGTTGACGATGATGAGT+CGG + chr6_1:19290443-19290462 Msa0878380:CDS 45.0%
! GATGATGAGTCGGTGAGTTT+TGG + chr6_1:19290453-19290472 Msa0878380:CDS 45.0%
! GATGGTATTGGAAGAGAGTG+TGG + chr6_1:19290537-19290556 Msa0878380:CDS 45.0%
! TATTGGAAGAGAGTGTGGGT+TGG + chr6_1:19290542-19290561 Msa0878380:CDS 45.0%
! ATTGGAAGAGAGTGTGGGTT+GGG + chr6_1:19290543-19290562 Msa0878380:CDS 45.0%
!! TGTGGGTTGGGTTGTTTATG+TGG + chr6_1:19290555-19290574 Msa0878380:CDS 45.0%
!! GTGGGTTGGGTTGTTTATGT+GGG + chr6_1:19290556-19290575 Msa0878380:CDS 45.0%
! GTTGGGTTGTTTATGTGGGA+GGG + chr6_1:19290560-19290579 Msa0878380:CDS 45.0%
AAGATTGTATGGTGTGGTGG+TGG + chr6_1:19290627-19290646 Msa0878380:CDS 45.0%
AGATTGTATGGTGTGGTGGT+GGG + chr6_1:19290628-19290647 Msa0878380:CDS 45.0%
! ATGGGGTTTGTTTGCGAATC+AGG + chr6_1:19290656-19290675 Msa0878380:CDS 45.0%
AATTGATCCGAATTCGGAGC+TGG + chr6_1:19290958-19290977 Msa0878380:intron 45.0%
AGATGGACAGGGATTGAACT+TGG - chr6_1:19291317-19291336 None:intergenic 45.0%
GTTCAATCCCTGTCCATCTA+CGG + chr6_1:19291318-19291337 Msa0878380:intron 45.0%
TTCAATCCCTGTCCATCTAC+GGG + chr6_1:19291319-19291338 Msa0878380:intron 45.0%
! AGATGACGGTCTATAGGTCA+AGG + chr6_1:19291597-19291616 Msa0878380:intron 45.0%
! GATGACGGTCTATAGGTCAA+GGG + chr6_1:19291598-19291617 Msa0878380:intron 45.0%
ATAGGTCAAGGGTGAAGTCT+TGG + chr6_1:19291609-19291628 Msa0878380:intron 45.0%
!! AGGTGCTCTAAGAAATTGGG+AGG + chr6_1:19291665-19291684 Msa0878380:intron 45.0%
GTCTCAGAAGAGCTTGTGTT+AGG - chr6_1:19291960-19291979 None:intergenic 45.0%
!! CAAGCTCTTCTGAGACTGTT+TGG + chr6_1:19291964-19291983 Msa0878380:intron 45.0%
! AAGCTGTTTCGGAGAGCTTA+TGG - chr6_1:19292033-19292052 None:intergenic 45.0%
ACCTTTCACACAGAAAACCG+CGG - chr6_1:19292344-19292363 None:intergenic 45.0%
GTAAGGGAACATCTTCCATC+AGG + chr6_1:19292454-19292473 Msa0878380:CDS 45.0%
GGAACATCTTCCATCAGGAA+AGG + chr6_1:19292459-19292478 Msa0878380:CDS 45.0%
CTCAAACATGCCTTTCCTGA+TGG - chr6_1:19292472-19292491 None:intergenic 45.0%
CAAGAATTGGAAACGTTGCC+CGG + chr6_1:19292509-19292528 Msa0878380:CDS 45.0%
AAGCAAAGAAGCAAAGGCGA+GGG - chr6_1:19292603-19292622 None:intergenic 45.0%
TCAGGAAAAAGTCCAATGGG+CGG + chr6_1:19292671-19292690 Msa0878380:CDS 45.0%
GCAATGTTCCAAGGCAAGAA+GGG - chr6_1:19292714-19292733 None:intergenic 45.0%
!! AATGAGATGATGATGGGGAG+GGG + chr6_1:19292786-19292805 Msa0878380:three_prime_UTR 45.0%
TGGCAAGTTGTGTGTGGGTT+AGG - chr6_1:19289762-19289781 None:intergenic 50.0%
GCGACGAAGGGTGATGATTT+GGG - chr6_1:19289821-19289840 None:intergenic 50.0%
TGCGACGAAGGGTGATGATT+TGG - chr6_1:19289822-19289841 None:intergenic 50.0%
!! GATGATGGGTCGGTGAGATT+TGG + chr6_1:19290015-19290034 Msa0878380:CDS 50.0%
!! TGTGATAATGGGTCAGTGGG+AGG + chr6_1:19290063-19290082 Msa0878380:CDS 50.0%
CACCACCACCCAATGATGAT+GGG + chr6_1:19290124-19290143 Msa0878380:CDS 50.0%
ACTGACCCATCATCATTGGG+TGG - chr6_1:19290132-19290151 None:intergenic 50.0%
!! GGGTCAGTGAGTTTTGGTGA+TGG + chr6_1:19290144-19290163 Msa0878380:CDS 50.0%
!! GGTGTATGTGATGATGGTGG+GGG + chr6_1:19290174-19290193 Msa0878380:CDS 50.0%
!! ATTCCGCCGGTTGATGAAGT+TGG + chr6_1:19290216-19290235 Msa0878380:CDS 50.0%
!! TTCCGCCGGTTGATGAAGTT+GGG + chr6_1:19290217-19290236 Msa0878380:CDS 50.0%
! TCATCATCGATCGCTCTAGG+CGG - chr6_1:19290336-19290355 None:intergenic 50.0%
CCATCATCATCGATCGCTCT+AGG - chr6_1:19290339-19290358 None:intergenic 50.0%
CCTAGAGCGATCGATGATGA+TGG + chr6_1:19290336-19290355 Msa0878380:CDS 50.0%
!! GGATCGGTGAGATTTGGTGT+TGG + chr6_1:19290357-19290376 Msa0878380:CDS 50.0%
TGTGAAAATGGGAAGGTGGG+AGG + chr6_1:19290381-19290400 Msa0878380:CDS 50.0%
! TCAACCGTTCTAGGCGGAAT+TGG - chr6_1:19290432-19290451 None:intergenic 50.0%
! TCATCGTCAACCGTTCTAGG+CGG - chr6_1:19290438-19290457 None:intergenic 50.0%
!! TGAGTCGGTGAGTTTTGGTG+TGG + chr6_1:19290458-19290477 Msa0878380:CDS 50.0%
!! GAGTCGGTGAGTTTTGGTGT+GGG + chr6_1:19290459-19290478 Msa0878380:CDS 50.0%
GGTGTGGGATGTGAATGTGA+AGG + chr6_1:19290474-19290493 Msa0878380:CDS 50.0%
! GGTTGGGTTGTTTATGTGGG+AGG + chr6_1:19290559-19290578 Msa0878380:CDS 50.0%
TGTTTATGTGGGAGGGAGTG+TGG + chr6_1:19290567-19290586 Msa0878380:CDS 50.0%
! TGGGAGGGAGTGTGGTAATA+GGG + chr6_1:19290575-19290594 Msa0878380:CDS 50.0%
CCAACACGTTGTTGGCAACA+AGG - chr6_1:19291403-19291422 None:intergenic 50.0%
CCTTGTTGCCAACAACGTGT+TGG + chr6_1:19291400-19291419 Msa0878380:intron 50.0%
! TGATGACGATACCCCTGAGA+TGG + chr6_1:19291885-19291904 Msa0878380:intron 50.0%
! TCCGCGGTTTTCTGTGTGAA+AGG + chr6_1:19292340-19292359 Msa0878380:intron 50.0%
! TGACAACCACAGAAGCACAG+AGG + chr6_1:19292371-19292390 Msa0878380:CDS 50.0%
TTGTCTCCTCTGTGCTTCTG+TGG - chr6_1:19292380-19292399 None:intergenic 50.0%
TATGATGAACTGGCATCGCG+TGG + chr6_1:19292406-19292425 Msa0878380:CDS 50.0%
GAAGCAAAGAAGCAAAGGCG+AGG - chr6_1:19292604-19292623 None:intergenic 50.0%
GGCAATGTTCCAAGGCAAGA+AGG - chr6_1:19292715-19292734 None:intergenic 50.0%
! CTTCTGAGGGCAATGTTCCA+AGG - chr6_1:19292723-19292742 None:intergenic 50.0%
!! ATGAGATGATGATGGGGAGG+GGG + chr6_1:19292787-19292806 Msa0878380:three_prime_UTR 50.0%
!! CTCGAAGGTTCTGGAAGCGT+CGG - chr6_1:19289848-19289867 None:intergenic 55.0%
!! TCAATCATGGGGTGCTGGAG+AGG + chr6_1:19289975-19289994 Msa0878380:CDS 55.0%
!! CAATCATGGGGTGCTGGAGA+GGG + chr6_1:19289976-19289995 Msa0878380:CDS 55.0%
AATGGGTCAGTGGGAGGTTG+TGG + chr6_1:19290069-19290088 Msa0878380:CDS 55.0%
ATGGGTCAGTGGGAGGTTGT+GGG + chr6_1:19290070-19290089 Msa0878380:CDS 55.0%
!! TCATCATTGGGTGGTGGTGG+TGG - chr6_1:19290123-19290142 None:intergenic 55.0%
! CCATCATCATTGGGTGGTGG+TGG - chr6_1:19290126-19290145 None:intergenic 55.0%
CCACCACCACCCAATGATGA+TGG + chr6_1:19290123-19290142 Msa0878380:CDS 55.0%
GACCCATCATCATTGGGTGG+TGG - chr6_1:19290129-19290148 None:intergenic 55.0%
ACCGGCCCAACTTCATCAAC+CGG - chr6_1:19290225-19290244 None:intergenic 55.0%
! GAAGTTGGGCCGGTGAGTTT+TGG + chr6_1:19290231-19290250 Msa0878380:CDS 55.0%
!! GATGATGGGTCTGTGGGAGA+TGG + chr6_1:19290282-19290301 Msa0878380:CDS 55.0%
ATGGGTCTGTGGGAGATGGT+GGG + chr6_1:19290286-19290305 Msa0878380:CDS 55.0%
! TCGATCGCTCTAGGCGGAAT+TGG - chr6_1:19290330-19290349 None:intergenic 55.0%
AATGGGAAGGTGGGAGGTGA+TGG + chr6_1:19290387-19290406 Msa0878380:CDS 55.0%
ATGGGAAGGTGGGAGGTGAT+GGG + chr6_1:19290388-19290407 Msa0878380:CDS 55.0%
! GTGGGAGGGAGTGTGGTAAT+AGG + chr6_1:19290574-19290593 Msa0878380:CDS 55.0%
!! GTATGGTGTGGTGGTGGGAA+AGG + chr6_1:19290633-19290652 Msa0878380:CDS 55.0%
!! GTGTGGTGGTGGGAAAGGAT+GGG + chr6_1:19290638-19290657 Msa0878380:CDS 55.0%
!! TGTGGTGGTGGGAAAGGATG+GGG + chr6_1:19290639-19290658 Msa0878380:CDS 55.0%
TGGCTTCCCGTAGATGGACA+GGG - chr6_1:19291328-19291347 None:intergenic 55.0%
GGTGATCGGATTTGCCAGAC+TGG - chr6_1:19291348-19291367 None:intergenic 55.0%
!! TGAGATGATGATGGGGAGGG+GGG + chr6_1:19292788-19292807 Msa0878380:three_prime_UTR 55.0%
! AGCGTCGGAGATGCGACGAA+GGG - chr6_1:19289833-19289852 None:intergenic 60.0%
!! AAGCGTCGGAGATGCGACGA+AGG - chr6_1:19289834-19289853 None:intergenic 60.0%
TGGGTCAGTGGGAGGTTGTG+GGG + chr6_1:19290071-19290090 Msa0878380:CDS 60.0%
!! TCATTGGGTGGTGGTGGTGG+TGG - chr6_1:19290120-19290139 None:intergenic 60.0%
GGCCCAACTTCATCAACCGG+CGG - chr6_1:19290222-19290241 None:intergenic 60.0%
!! GCCGGTTGATGAAGTTGGGC+CGG + chr6_1:19290221-19290240 Msa0878380:CDS 60.0%
!! GGGCCGGTGAGTTTTGGTGT+TGG + chr6_1:19290237-19290256 Msa0878380:CDS 60.0%
GATGGGTCTGTGGGAGATGG+TGG + chr6_1:19290285-19290304 Msa0878380:CDS 60.0%
TGGGTCTGTGGGAGATGGTG+GGG + chr6_1:19290287-19290306 Msa0878380:CDS 60.0%
TGGGAAGGTGGGAGGTGATG+GGG + chr6_1:19290389-19290408 Msa0878380:CDS 60.0%
!! GGTGTGGTGGTGGGAAAGGA+TGG + chr6_1:19290637-19290656 Msa0878380:CDS 60.0%
CTGGCTTCCCGTAGATGGAC+AGG - chr6_1:19291329-19291348 None:intergenic 60.0%
!! CCAGACTGGCTTCCCGTAGA+TGG - chr6_1:19291334-19291353 None:intergenic 60.0%
CCATCTACGGGAAGCCAGTC+TGG + chr6_1:19291331-19291350 Msa0878380:intron 60.0%
TGCAGCAGCCCTTCTTGCCT+TGG + chr6_1:19292703-19292722 Msa0878380:CDS 60.0%
GGGTCAGTGGGAGGTTGTGG+GGG + chr6_1:19290072-19290091 Msa0878380:CDS 65.0%
TCAGTGGGAGGTTGTGGGGG+TGG + chr6_1:19290075-19290094 Msa0878380:CDS 65.0%
! GGGTCTGTGGGAGATGGTGG+GGG + chr6_1:19290288-19290307 Msa0878380:CDS 65.0%
! GGGAAGGTGGGAGGTGATGG+GGG + chr6_1:19290390-19290409 Msa0878380:CDS 65.0%
!! AAGGTGGGAGGTGATGGGGG+TGG + chr6_1:19290393-19290412 Msa0878380:CDS 65.0%
GCAGTGACACAGCCGCCCAT+TGG - chr6_1:19292686-19292705 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr6_1 gene 19289655 19292818 19289655 ID=Msa0878380;Name=Msa0878380
chr6_1 mRNA 19289655 19292818 19289655 ID=Msa0878380-mRNA-1;Parent=Msa0878380;Name=Msa0878380-mRNA-1;_AED=0.01;_eAED=0.08;_QI=0|1|0.5|1|1|1|2|68|482
chr6_1 exon 19289655 19290714 19289655 ID=Msa0878380-mRNA-1:exon:5241;Parent=Msa0878380-mRNA-1
chr6_1 exon 19292362 19292818 19292362 ID=Msa0878380-mRNA-1:exon:5242;Parent=Msa0878380-mRNA-1
chr6_1 CDS 19289655 19290714 19289655 ID=Msa0878380-mRNA-1:cds;Parent=Msa0878380-mRNA-1
chr6_1 CDS 19292362 19292750 19292362 ID=Msa0878380-mRNA-1:cds;Parent=Msa0878380-mRNA-1
chr6_1 three_prime_UTR 19292751 19292818 19292751 ID=Msa0878380-mRNA-1:three_prime_utr;Parent=Msa0878380-mRNA-1
Gene Sequence

>Msa0878380

ATGAAGATTCCCAGGAAATCGAGTAGTAGCAATGGTGATTCAAACTCTTCATCGTCATCATCATCATCGTTTCTTGTTCAACACGCAACCCTAATTCTACCATACCTAACCCACACACAACTTGCCAACATCTCCTTAACATGTAAATCACTCCGTAAACTCACCCAAATCATCACCCTTCGTCGCATCTCCGACGCTTCCAGAACCTTCGAGAATAGTCCAATCCCATTTCTCAACACCATCAACAACAACAACAACCCTCCTTACTCCTACTTTCTCTACACACCTTCACTCATTCTGTCTCACAACACCCCCAATTATCAATCATGGGGTGCTGGAGAGGGTAATTCTGTCATTTCAGATGATGGGTCGGTGAGATTTGGTGTTGATTGTGATTTTGAAGGTGTTTGTGATAATGGGTCAGTGGGAGGTTGTGGGGGTGGTTCTGTCATTTCATCACTACCACCACCACCACCACCCAATGATGATGGGTCAGTGAGTTTTGGTGATGGATGTGAAGGTGTATGTGATGATGGTGGGGGTAAATCAGTAATTTCACTAATTCCGCCGGTTGATGAAGTTGGGCCGGTGAGTTTTGGTGTTGGATGTAATTTTCAAGGTGTATGTGATGATGGGTCTGTGGGAGATGGTGGGGGTAGTTCAGTAATTTCACCAATTCCGCCTAGAGCGATCGATGATGATGGATCGGTGAGATTTGGTGTTGGTTGTGAAAATGGGAAGGTGGGAGGTGATGGGGGTGGTTCAGTAATTTCACCAATTCCGCCTAGAACGGTTGACGATGATGAGTCGGTGAGTTTTGGTGTGGGATGTGAATGTGAAGGTGTTTGTGATGTTGAGTGTATGTGTTTTTTTGATGGGGTTGATGGTATTGGAAGAGAGTGTGGGTTGGGTTGTTTATGTGGGAGGGAGTGTGGTAATAGGGTGAGTCAAAATGGGGTTAATGTTAGGGTTAAGATTGTATGGTGTGGTGGTGGGAAAGGATGGGGTTTGTTTGCGAATCAGGTTGTTCGTAAAGAGGAGTTCTTGTTTCAATATGCAGGTGAACTACTGACAACCACAGAAGCACAGAGGAGACAACAACATTATGATGAACTGGCATCGCGTGGTCGTTTCTCATCTGCTCTTTTAGTAGTAAGGGAACATCTTCCATCAGGAAAGGCATGTTTGAGATTGAACATAGACGCAACAAGAATTGGAAACGTTGCCCGGTTTGTAAATCATTCATGCGATGGTGGTAATTTAAGCACAAAGCTAGTCAGAAGTACAGGAGCTTTGTTCCCTCGCCTTTGCTTCTTTGCTTCAAAAGATATCCAAAAAGATGAAGAGCTTGCTTTTAGCTATGGAGAAATCAGGAAAAAGTCCAATGGGCGGCTGTGTCACTGCAGCAGCCCTTCTTGCCTTGGAACATTGCCCTCAGAAGACACTTGA
Protein sequence

>Msa0878380

MKIPRKSSSSNGDSNSSSSSSSSFLVQHATLILPYLTHTQLANISLTCKSLRKLTQIITLRRISDASRTFENSPIPFLNTINNNNNPPYSYFLYTPSLILSHNTPNYQSWGAGEGNSVISDDGSVRFGVDCDFEGVCDNGSVGGCGGGSVISSLPPPPPPNDDGSVSFGDGCEGVCDDGGGKSVISLIPPVDEVGPVSFGVGCNFQGVCDDGSVGDGGGSSVISPIPPRAIDDDGSVRFGVGCENGKVGGDGGGSVISPIPPRTVDDDESVSFGVGCECEGVCDVECMCFFDGVDGIGRECGLGCLCGRECGNRVSQNGVNVRVKIVWCGGGKGWGLFANQVVRKEEFLFQYAGELLTTTEAQRRQQHYDELASRGRFSSALLVVREHLPSGKACLRLNIDATRIGNVARFVNHSCDGGNLSTKLVRSTGALFPRLCFFASKDIQKDEELAFSYGEIRKKSNGRLCHCSSPSCLGTLPSEDT*