AlfalfaGEDB | Msa0478580

M. sativa cultivar zhongmu-4 / Msa0478580

KEGG: K20869
GO: GO:0000139 GO:0000271 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005975 GO:0005976 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009555 GO:0009653 GO:0009832 GO:0009834 GO:0009987 GO:0010208 GO:0010383 GO:0010410 GO:0010413 GO:0010417 GO:0010584 GO:0010927 GO:0012505 GO:0016020 GO:0016043 GO:0016051 GO:0016740 GO:0016757 GO:0016763 GO:0022607 GO:0030198 GO:0031090 GO:0031984 GO:0032501 GO:0032502 GO:0032989 GO:0033692 GO:0034637 GO:0034645 GO:0042285 GO:0042546 GO:0043062 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044036 GO:0044038 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044262 GO:0044264 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0045229 GO:0045491 GO:0045492 GO:0048229 GO:0048646 GO:0048856 GO:0048869 GO:0070589 GO:0070592 GO:0071554 GO:0071669 GO:0071704 GO:0071840 GO:0085029 GO:0098588 GO:0098791 GO:1901576
PFAM: PF03360.19

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0478580	XP_003603680.1	96.372	441	13	2	1	438	1	441	0.0	882

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0478580	sp\|Q9SXC4\|IRX9H_ARATH	56.009	441	144	7	1	438	1	394	2.70e-171	488

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0478580	Q50HW4	96.372	441	13	2	1	438	1	441	0.0	882

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0002560	Msa0478580	0.813032	3.142709e-51	-8.615850e-47
Msa0002680	Msa0478580	0.830045	3.662296e-55	-8.615850e-47
Msa0003220	Msa0478580	0.845789	3.262736e-59	-8.615850e-47
Msa0003270	Msa0478580	0.833729	4.510765e-56	-8.615850e-47
Msa0004060	Msa0478580	0.804129	2.505312e-49	-8.615850e-47
Msa0004540	Msa0478580	0.850646	1.483848e-60	-8.615850e-47
Msa0006880	Msa0478580	0.843692	1.198533e-58	-8.615850e-47
Msa0007850	Msa0478580	0.836887	7.191159e-57	-8.615850e-47
Msa0008090	Msa0478580	0.813991	1.933738e-51	-8.615850e-47
Msa0008220	Msa0478580	0.818991	1.468033e-52	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0478580	MtrunA17_Chr3g0140951	96.372	441	13	2	1	438	1	441	0.0	882
Msa0478580	MtrunA17_Chr3g0140001	42.670	457	214	12	1	434	1	432	1.99e-111	335
Msa0478580	MtrunA17_Chr7g0263751	36.842	361	187	8	54	410	2	325	1.00e-72	232
Msa0478580	MtrunA17_Chr5g0401811	28.041	296	162	9	185	438	151	437	1.19e-24	106
Msa0478580	MtrunA17_Chr4g0053291	27.848	316	179	9	165	438	130	438	1.17e-22	100

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0478580	AT1G27600.2	56.009	441	144	7	1	438	1	394	2.74e-172	488
Msa0478580	AT1G27600.1	56.009	441	144	7	1	438	1	394	2.74e-172	488
Msa0478580	AT2G37090.1	35.829	374	186	12	57	412	4	341	5.43e-71	228
Msa0478580	AT5G67230.1	30.479	292	163	9	185	438	152	441	1.29e-29	120
Msa0478580	AT4G36890.1	28.754	313	171	10	169	438	148	451	1.24e-26	112

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Find 136 sgRNAs with CRISPR-Local

Find 303 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATAGCCTTGTTCTTGCT+TGG	0.406483	3_3:+83371226	None:intergenic
AACTGAGATTTAGAAGTTAG+CGG	0.466415	3_3:+83370658	None:intergenic
AACTTTGTGCAAGAAAATTT+GGG	0.366052	3_3:+83370310	None:intergenic
AAGCAAGAACAAGGCTATTT+TGG	0.178767	3_3:-83371224	Msa0478580:CDS
AAGCACGTCAGCGTCGGTGG+TGG	0.531902	3_3:-83373152	Msa0478580:CDS
AATATCAGTAACCTGTTTCT+GGG	0.476110	3_3:+83370337	None:intergenic
AATGGCGAAAAGTTGCTTTC+AGG	0.453308	3_3:-83373346	Msa0478580:CDS
AATTAATGGCGTCATTCCGA+CGG	0.581992	3_3:-83373544	Msa0478580:exon
AATTCTATAGAGTGTGTGAT+AGG	0.451944	3_3:-83370744	Msa0478580:three_prime_UTR
ACCACCACCCATAAAAGCGG+CGG	0.658671	3_3:+83372897	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
CTGTGTAATGAAGAAATTAC+AGG	+	chr3_3:83370364-83370383	None:intergenic	30.0%
CTGTAATTTCTTCATTACAC+AGG	-	chr3_3:83370362-83370381	Msa0478580:three_prime_UTR	30.0%
ATTTCAATCCCTAGATTTCT+AGG	-	chr3_3:83370551-83370570	Msa0478580:three_prime_UTR	30.0%
TTTCAATCCCTAGATTTCTA+GGG	-	chr3_3:83370552-83370571	Msa0478580:three_prime_UTR	30.0%
ATTTAGGTACATGAAGAGAT+CGG	+	chr3_3:83370581-83370600	None:intergenic	30.0%
TTATTAGGTATGTTCCCTTT+CGG	-	chr3_3:83370846-83370865	Msa0478580:CDS	30.0%
GCGATTATTGAGAATTGATT+TGG	+	chr3_3:83370961-83370980	None:intergenic	30.0%
ATAATGAAAAGCTGAAAGAG+AGG	-	chr3_3:83371093-83371112	Msa0478580:CDS	30.0%
TAATGAAAAGCTGAAAGAGA+GGG	-	chr3_3:83371094-83371113	Msa0478580:CDS	30.0%
AAAAATATGACTGAAAAGCG+CGG	+	chr3_3:83371190-83371209	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr3_3	gene	83370195	83373969	83370195	ID=Msa0478580;Name=Msa0478580
chr3_3	mRNA	83370195	83373969	83370195	ID=Msa0478580-mRNA-1;Parent=Msa0478580;Name=Msa0478580-mRNA-1;_AED=0.00;_eAED=0.00;_QI=408\|1\|1\|1\|1\|1\|3\|581\|438
chr3_3	exon	83370195	83370946	83370195	ID=Msa0478580-mRNA-1:exon:23399;Parent=Msa0478580-mRNA-1
chr3_3	exon	83371033	83371282	83371033	ID=Msa0478580-mRNA-1:exon:23398;Parent=Msa0478580-mRNA-1
chr3_3	exon	83372666	83373969	83372666	ID=Msa0478580-mRNA-1:exon:23397;Parent=Msa0478580-mRNA-1
chr3_3	five_prime_UTR	83373562	83373969	83373562	ID=Msa0478580-mRNA-1:five_prime_utr;Parent=Msa0478580-mRNA-1
chr3_3	CDS	83372666	83373561	83372666	ID=Msa0478580-mRNA-1:cds;Parent=Msa0478580-mRNA-1
chr3_3	CDS	83371033	83371282	83371033	ID=Msa0478580-mRNA-1:cds;Parent=Msa0478580-mRNA-1
chr3_3	CDS	83370776	83370946	83370776	ID=Msa0478580-mRNA-1:cds;Parent=Msa0478580-mRNA-1
chr3_3	three_prime_UTR	83370195	83370775	83370195	ID=Msa0478580-mRNA-1:three_prime_utr;Parent=Msa0478580-mRNA-1

Gene Sequence

>Msa0478580

ATGGCGTCATTCCGACGGACGTTATCTCCGGCATATCACGACCGTCACTACATAAACGGCGGTGGTGCCGCCTTTTCACCGTCGTCTCCATCTCACAAACTTCCATCTTCAAACGGAAACTACTCTGCAATAGCTTCGTCGTTTCAGAGATTAATCGGTGGCGTTTTCATGCGACGATACAATCGAAAGGGACAATGGCGAAAAGTTGCTTTCAGGTGCGTTCTCTGTTTCTTCGTTGGGTTTTTATTAGGTATGTTCCCTTTCGGTAATCTCATTCATGAAATTCCTCAACAACATCGTGAAAACAACAACAATATCATTGCTTTTGATATCAATAAAACTCCACAATCTGATGCCAAATCAATTCTCAATAATCGCGTTTTGAAAAAGCACGTCAGCGTCGGTGGTGGTGGTGATGATGAGGATAAGGATAAGAAGGGTTTTTTGATTGAACAAGTAAGTTTGAGCTCAAACATGAACGCTGAGAAGGATAATGAAAAGCTGAAAGAGAGGGAATTGATCGAATCTGAGAAAATTGATATTGTGGCGAGGAAGCAATTGATTATTGTGACACCGACTTATAACCGCGCTTTTCAGTCATATTTTTTGAATAGGTTAGGGCAGGTTTTGAGGTTGGTGCCGCCGCCGCTTTTATGGGTGGTGGTGGAAATGAATTCTGCTTCTATGGAAACTGCTGAATTGTTGAGAAAAACGGGTGTGATGTATAGGCATTTGGTGTGTACTAAGAATTCAACGGATGTGAAGGATAGAGGAGTTCATCAGAGGAATAAAGCATTGGAGCATATTGAACATCATAAACTTGATGGGATTGTTTACTTTGCTGATGATGATAATGTATATTCTCTTGAATTGTTTCAGACAATCAGAGATATCAGTCGTTTTGGCACTTGGCCTGTCGCCATGCTTGCACCAAGCAAGAACAAGGCTATTTTGGAGGGTCCGGTATGCAATGGAAGCCAAGTGCTTGGGTGGCATACAAATGAGAAAAGTAAAAGACTTCGAAGATTTCATGTTGATATGTCTGGGTTTGCATTCAACAGCACAATCCTGTGGGATCCAAAGCGGTGGCGGCGCCCTACTTCAAATCCTATACGGCAATTAGACTCAGTGAAAGAGGGTTTTCAGGAGACCACCTTTATTGAACAATTGGTGGAAGATGAGAGTCAAATGGAAGGTTCGCCACCGGGTTGCAAGAAAATAATGAATTGGCATCTTCATTTGAATGTTCATAATATAGTTTATCCAAAGGGTTGGATGCTTGAGAAAAACCTAGATGCTGTCATCCACGTCAAGTAA

Protein sequence

>Msa0478580

MASFRRTLSPAYHDRHYINGGGAAFSPSSPSHKLPSSNGNYSAIASSFQRLIGGVFMRRYNRKGQWRKVAFRCVLCFFVGFLLGMFPFGNLIHEIPQQHRENNNNIIAFDINKTPQSDAKSILNNRVLKKHVSVGGGGDDEDKDKKGFLIEQVSLSSNMNAEKDNEKLKERELIESEKIDIVARKQLIIVTPTYNRAFQSYFLNRLGQVLRLVPPPLLWVVVEMNSASMETAELLRKTGVMYRHLVCTKNSTDVKDRGVHQRNKALEHIEHHKLDGIVYFADDDNVYSLELFQTIRDISRFGTWPVAMLAPSKNKAILEGPVCNGSQVLGWHTNEKSKRLRRFHVDMSGFAFNSTILWDPKRWRRPTSNPIRQLDSVKEGFQETTFIEQLVEDESQMEGSPPGCKKIMNWHLHLNVHNIVYPKGWMLEKNLDAVIHVK*