AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0478580


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0478580 MtrunA17_Chr3g0140951 96.372 441 13 2 1 438 1 441 0.0 882
Msa0478580 MtrunA17_Chr3g0140001 42.670 457 214 12 1 434 1 432 1.99e-111 335
Msa0478580 MtrunA17_Chr7g0263751 36.842 361 187 8 54 410 2 325 1.00e-72 232
Msa0478580 MtrunA17_Chr5g0401811 28.041 296 162 9 185 438 151 437 1.19e-24 106
Msa0478580 MtrunA17_Chr4g0053291 27.848 316 179 9 165 438 130 438 1.17e-22 100
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0478580 AT1G27600.2 56.009 441 144 7 1 438 1 394 2.74e-172 488
Msa0478580 AT1G27600.1 56.009 441 144 7 1 438 1 394 2.74e-172 488
Msa0478580 AT2G37090.1 35.829 374 186 12 57 412 4 341 5.43e-71 228
Msa0478580 AT5G67230.1 30.479 292 163 9 185 438 152 441 1.29e-29 120
Msa0478580 AT4G36890.1 28.754 313 171 10 169 438 148 451 1.24e-26 112

Find 136 sgRNAs with CRISPR-Local

Find 303 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TAACTTTGTGCAAGAAAATT+TGG 0.094968 3_3:+83370309 None:intergenic
ATTACAAATAAAATTCTTTA+TGG 0.108209 3_3:+83370700 None:intergenic
CGGAATGACGCCATTAATTT+AGG 0.156462 3_3:+83373548 None:intergenic
AAGCAAGAACAAGGCTATTT+TGG 0.178767 3_3:-83371224 Msa0478580:CDS
TCTTGAACTACATGAATTTC+AGG 0.191022 3_3:+83370482 None:intergenic
TGAAAAGTTTGTCTTATTCT+AGG 0.191970 3_3:-83370597 Msa0478580:three_prime_UTR
CAATATCAGTAACCTGTTTC+TGG 0.224531 3_3:+83370336 None:intergenic
ATTTCAATCCCTAGATTTCT+AGG 0.225591 3_3:-83373591 Msa0478580:five_prime_UTR
TCTTCATGTACCTAAATTAA+TGG 0.228573 3_3:-83373558 Msa0478580:exon
TAAAATTGTATGAAATAAAA+AGG 0.277506 3_3:+83373889 None:intergenic
TTCCACCAATTGTTCAATAA+AGG 0.288276 3_3:+83370917 None:intergenic
GGAAATGAATTCTGCTTCTA+TGG 0.295993 3_3:-83372874 Msa0478580:CDS
GCGATTATTGAGAATTGATT+TGG 0.304122 3_3:+83373184 None:intergenic
AGATTTCATGTTGATATGTC+TGG 0.307522 3_3:-83371133 Msa0478580:CDS
ACTGAGTCTAATTGCCGTAT+AGG 0.330564 3_3:+83371049 None:intergenic
GTAGGGCGCCGCCACCGCTT+TGG 0.351660 3_3:+83371079 None:intergenic
CATGAATTTCAGGTTGTTGC+TGG 0.352673 3_3:+83370492 None:intergenic
TGCGTTCTCTGTTTCTTCGT+TGG 0.355661 3_3:-83373323 Msa0478580:CDS
GATCAAAAGACAAGTTAAAT+TGG 0.360375 3_3:+83370423 None:intergenic
AACTTTGTGCAAGAAAATTT+GGG 0.366052 3_3:+83370310 None:intergenic
GACCACCTTTATTGAACAAT+TGG 0.367701 3_3:-83370922 Msa0478580:CDS
TTCTTCATTACACAGGTTAC+CGG 0.380960 3_3:-83373773 Msa0478580:five_prime_UTR
TTCTCAAGCATCCAACCCTT+TGG 0.387858 3_3:+83370807 None:intergenic
GCGTTCTCTGTTTCTTCGTT+GGG 0.390433 3_3:-83373322 Msa0478580:CDS
ATCGGAAACCCTAGAAATCT+AGG 0.394568 3_3:+83373582 None:intergenic
TATCACACACTCTATAGAAT+TGG 0.394651 3_3:+83370746 None:intergenic
ATTGAACATCATAAACTTGA+TGG 0.398247 3_3:-83372735 Msa0478580:CDS
GCCCTACTTCAAATCCTATA+CGG 0.399233 3_3:-83371063 Msa0478580:CDS
TCGTCGTTTCAGAGATTAAT+CGG 0.401703 3_3:-83373404 Msa0478580:CDS
TTCAGACAATCAGAGATATC+AGG 0.403188 3_3:-83372665 Msa0478580:intron
AAAATAGCCTTGTTCTTGCT+TGG 0.406483 3_3:+83371226 None:intergenic
TTATTAGGTATGTTCCCTTT+CGG 0.411490 3_3:-83373296 Msa0478580:CDS
CACGTCAGCGTCGGTGGTGG+TGG 0.416469 3_3:-83373149 Msa0478580:CDS
CTGTGTAATGAAGAAATTAC+AGG 0.420105 3_3:+83373781 None:intergenic
ATGCTATGTTGCCCAGAAAC+AGG 0.435073 3_3:-83370348 Msa0478580:three_prime_UTR
GTTGCAAGAAAATAATGAAT+TGG 0.437417 3_3:-83370863 Msa0478580:CDS
CACGACCGTCACTACATAAA+CGG 0.444334 3_3:-83373503 Msa0478580:CDS
AATTCTATAGAGTGTGTGAT+AGG 0.451944 3_3:-83370744 Msa0478580:three_prime_UTR
AATGGCGAAAAGTTGCTTTC+AGG 0.453308 3_3:-83373346 Msa0478580:CDS
CACAAACTTCCATCTTCAAA+CGG 0.454365 3_3:-83373446 Msa0478580:CDS
TGATGAGGATAAGGATAAGA+AGG 0.456919 3_3:-83373123 Msa0478580:CDS
AACTGAGATTTAGAAGTTAG+CGG 0.466415 3_3:+83370658 None:intergenic
TCAACGGATGTGAAGGATAG+AGG 0.473437 3_3:-83372789 Msa0478580:CDS
CACAAAGTTATTTGCAGAGG+TGG 0.474603 3_3:-83370296 Msa0478580:three_prime_UTR
CATAATATAGTTTATCCAAA+GGG 0.474680 3_3:-83370822 Msa0478580:CDS
GTTGCTGGGACCCAAAGAAT+GGG 0.475869 3_3:+83370507 None:intergenic
AATATCAGTAACCTGTTTCT+GGG 0.476110 3_3:+83370337 None:intergenic
GAGTAGTTTCCGTTTGAAGA+TGG 0.479126 3_3:+83373437 None:intergenic
GATTTCATGTTGATATGTCT+GGG 0.481532 3_3:-83371132 Msa0478580:CDS
TGTGGGATCCAAAGCGGTGG+CGG 0.482823 3_3:-83371087 Msa0478580:CDS
AGATGGAGACGACGGTGAAA+AGG 0.484318 3_3:+83373469 None:intergenic
TGTTGCTGGGACCCAAAGAA+TGG 0.485589 3_3:+83370506 None:intergenic
CACCTTTATTGAACAATTGG+TGG 0.486008 3_3:-83370919 Msa0478580:CDS
TGACGTGGATGACAGCATCT+AGG 0.490726 3_3:+83370781 None:intergenic
GGTGTCTGTGGTTATGAGTA+TGG 0.493038 3_3:+83373724 None:intergenic
TGGTGGTGATGATGAGGATA+AGG 0.495077 3_3:-83373132 Msa0478580:CDS
CTTGGTGCAAGCATGGCGAC+AGG 0.495355 3_3:+83371244 None:intergenic
ATGAATTTCAGGTTGTTGCT+GGG 0.496226 3_3:+83370493 None:intergenic
TGTGGTTATGAGTATGGATT+CGG 0.500729 3_3:+83373730 None:intergenic
GCCGTATAGGATTTGAAGTA+GGG 0.501903 3_3:+83371062 None:intergenic
ATAATGAAAAGCTGAAAGAG+AGG 0.501926 3_3:-83373049 Msa0478580:CDS
CATGAATGAGATTACCGAAA+GGG 0.506123 3_3:+83373282 None:intergenic
TAGTGACGGTCGTGATATGC+CGG 0.506800 3_3:+83373512 None:intergenic
CAACATAGCATTAGTGCCAC+TGG 0.513166 3_3:+83370360 None:intergenic
ATTCCGACGGACGTTATCTC+CGG 0.516727 3_3:-83373531 Msa0478580:CDS
GAAGATGGAAGTTTGTGAGA+TGG 0.518700 3_3:+83373452 None:intergenic
GTTCTTGCTTGGTGCAAGCA+TGG 0.519522 3_3:+83371237 None:intergenic
TGCCGTATAGGATTTGAAGT+AGG 0.523006 3_3:+83371061 None:intergenic
CACACACTCTATAGAATTGG+TGG 0.524728 3_3:+83370749 None:intergenic
TCTCTCTCTTCACACGAAGA+AGG 0.525805 3_3:-83373690 Msa0478580:five_prime_UTR
TTGAACATCATAAACTTGAT+GGG 0.527171 3_3:-83372734 Msa0478580:CDS
TATGGATTCGGTTCGGATCG+AGG 0.530374 3_3:+83373742 None:intergenic
TTTCAATCCCTAGATTTCTA+GGG 0.530676 3_3:-83373590 Msa0478580:five_prime_UTR
AAGCACGTCAGCGTCGGTGG+TGG 0.531902 3_3:-83373152 Msa0478580:CDS
GGGTGTGATGTATAGGCATT+TGG 0.535560 3_3:-83372826 Msa0478580:CDS
GCAATTAGACTCAGTGAAAG+AGG 0.535687 3_3:-83371041 Msa0478580:CDS
ATATAGTTTATCCAAAGGGT+TGG 0.536359 3_3:-83370818 Msa0478580:CDS
TGCAATGGAAGCCAAGTGCT+TGG 0.537309 3_3:-83371190 Msa0478580:CDS
ATTGATTTGGCATCAGATTG+TGG 0.537571 3_3:+83373197 None:intergenic
TTGTATGCCACCCAAGCACT+TGG 0.538534 3_3:+83371179 None:intergenic
GGTGGAAGATGAGAGTCAAA+TGG 0.541257 3_3:-83370901 Msa0478580:CDS
ATCTGAGAAAATTGATATTG+TGG 0.542030 3_3:-83373015 Msa0478580:CDS
TTATGAGTATGGATTCGGTT+CGG 0.543767 3_3:+83373735 None:intergenic
TCAAATGGAAGGTTCGCCAC+CGG 0.544013 3_3:-83370886 Msa0478580:CDS
CACCAATTGTTCAATAAAGG+TGG 0.551699 3_3:+83370920 None:intergenic
CAAATGGAAGGTTCGCCACC+GGG 0.554822 3_3:-83370885 Msa0478580:CDS
ATTTAGGTACATGAAGAGAT+CGG 0.556856 3_3:+83373564 None:intergenic
GCAATGGAAGCCAAGTGCTT+GGG 0.557871 3_3:-83371189 Msa0478580:CDS
AGAGAGAGAGACGGTGTCTG+TGG 0.559290 3_3:+83373712 None:intergenic
TAATGAAAAGCTGAAAGAGA+GGG 0.563255 3_3:-83373048 Msa0478580:CDS
TAAGAATTCAACGGATGTGA+AGG 0.565155 3_3:-83372796 Msa0478580:CDS
TTGGAGGGTCCGGTATGCAA+TGG 0.566859 3_3:-83371205 Msa0478580:CDS
ACTTGGCTTCCATTGCATAC+CGG 0.569129 3_3:+83371196 None:intergenic
TATAGAGTGTGTGATAGGTA+TGG 0.570408 3_3:-83370739 Msa0478580:three_prime_UTR
TCATCAGAGGAATAAAGCAT+TGG 0.572046 3_3:-83372763 Msa0478580:CDS
ACCACCCATAAAAGCGGCGG+CGG 0.572761 3_3:+83372900 None:intergenic
TGAAAAGCGCGGTTATAAGT+CGG 0.578372 3_3:+83372966 None:intergenic
ATGCGACGATACAATCGAAA+GGG 0.578550 3_3:-83373371 Msa0478580:CDS
GATGAGGATAAGGATAAGAA+GGG 0.579350 3_3:-83373122 Msa0478580:CDS
CTGTAATTTCTTCATTACAC+AGG 0.579666 3_3:-83373780 Msa0478580:five_prime_UTR
AATTAATGGCGTCATTCCGA+CGG 0.581992 3_3:-83373544 Msa0478580:exon
CATTCAACAGCACAATCCTG+TGG 0.583078 3_3:-83371105 Msa0478580:CDS
CTCAAACATGAACGCTGAGA+AGG 0.583981 3_3:-83373072 Msa0478580:CDS
TCATAATATAGTTTATCCAA+AGG 0.585209 3_3:-83370823 Msa0478580:CDS
GATACAATCGAAAGGGACAA+TGG 0.588516 3_3:-83373364 Msa0478580:CDS
TCGGAAACCCTAGAAATCTA+GGG 0.589072 3_3:+83373583 None:intergenic
TTGCACAAAGTTATTTGCAG+AGG 0.595116 3_3:-83370299 Msa0478580:three_prime_UTR
CGGTGGTGGTGGTGATGATG+AGG 0.599517 3_3:-83373138 Msa0478580:CDS
CAATTAGACTCAGTGAAAGA+GGG 0.602242 3_3:-83371040 Msa0478580:CDS
GCTTGCACCAAGCAAGAACA+AGG 0.606742 3_3:-83371233 Msa0478580:CDS
TCCTGTGGGATCCAAAGCGG+TGG 0.608772 3_3:-83371090 Msa0478580:CDS
GCCACCGCTTTGGATCCCAC+AGG 0.619308 3_3:+83371089 None:intergenic
TCGGATCGAGGTTGAAACTC+CGG 0.621620 3_3:+83373754 None:intergenic
AGGATAGAGGAGTTCATCAG+AGG 0.628437 3_3:-83372776 Msa0478580:CDS
CGTCACTACATAAACGGCGG+TGG 0.628520 3_3:-83373497 Msa0478580:CDS
ATGGAAGCCAAGTGCTTGGG+TGG 0.635295 3_3:-83371186 Msa0478580:CDS
TCCACCACCACCCATAAAAG+CGG 0.639611 3_3:+83372894 None:intergenic
TGGTGGAAGATTACTTGACG+TGG 0.643604 3_3:+83370766 None:intergenic
CATGCGACGATACAATCGAA+AGG 0.645339 3_3:-83373372 Msa0478580:CDS
TGGAGACGACGGTGAAAAGG+CGG 0.646294 3_3:+83373472 None:intergenic
GCTCATCAGTTAGCCACCAG+TGG 0.647141 3_3:-83370376 Msa0478580:three_prime_UTR
CACCGCCGTTTATGTAGTGA+CGG 0.648586 3_3:+83373498 None:intergenic
TCATGAATGAGATTACCGAA+AGG 0.650007 3_3:+83373281 None:intergenic
ATTCAACAGCACAATCCTGT+GGG 0.650054 3_3:-83371104 Msa0478580:CDS
AGAAAATTGATATTGTGGCG+AGG 0.651531 3_3:-83373010 Msa0478580:CDS
TTGCTGGGACCCAAAGAATG+GGG 0.653893 3_3:+83370508 None:intergenic
GAAGATGAGAGTCAAATGGA+AGG 0.657273 3_3:-83370897 Msa0478580:CDS
GGATACTCTTACAATTACAA+CGG 0.657840 3_3:+83370574 None:intergenic
ACCACCACCCATAAAAGCGG+CGG 0.658671 3_3:+83372897 None:intergenic
CATAGCATTAGTGCCACTGG+TGG 0.676902 3_3:+83370363 None:intergenic
TCGTTTCAGAGATTAATCGG+TGG 0.678331 3_3:-83373401 Msa0478580:CDS
GGTGTGTACTAAGAATTCAA+CGG 0.679123 3_3:-83372805 Msa0478580:CDS
ATGCCGGAGATAACGTCCGT+CGG 0.686418 3_3:+83373528 None:intergenic
GACCGTCACTACATAAACGG+CGG 0.698582 3_3:-83373500 Msa0478580:CDS
CAATCCTGTGGGATCCAAAG+CGG 0.703864 3_3:-83371093 Msa0478580:CDS
AGTTTGTGAGATGGAGACGA+CGG 0.778732 3_3:+83373461 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAAAATTGTATGAAATAAAA+AGG + chr3_3:83370256-83370275 None:intergenic 10.0%
!!! TTTTTTTTCTTAAATATCTT+TGG - chr3_3:83371806-83371825 Msa0478580:intron 10.0%
!! ATATTTGAAAAATTCAAATT+TGG + chr3_3:83372616-83372635 None:intergenic 10.0%
!! ATTACAAATAAAATTCTTTA+TGG + chr3_3:83373445-83373464 None:intergenic 10.0%
!! AATAATAATCCTAAAAAAGT+AGG + chr3_3:83371534-83371553 None:intergenic 15.0%
!!! ACTTTTTTAGGATTATTATT+CGG - chr3_3:83371534-83371553 Msa0478580:intron 15.0%
!! AACTTTAAGTATAAATTCAA+AGG + chr3_3:83371565-83371584 None:intergenic 15.0%
!! AAAAAAAAAACAATCATCAA+GGG + chr3_3:83371792-83371811 None:intergenic 15.0%
!! AAAAAAAAAAACAATCATCA+AGG + chr3_3:83371793-83371812 None:intergenic 15.0%
!! ATAAAATTCATACAAAGAAA+CGG + chr3_3:83371838-83371857 None:intergenic 15.0%
!!! TCTTTGTATGAATTTTATAA+CGG - chr3_3:83371840-83371859 Msa0478580:intron 15.0%
!! AAATCAAAACAATACAAATT+AGG + chr3_3:83372124-83372143 None:intergenic 15.0%
!!! ATTTTCCTTTTTTAATGAAA+TGG - chr3_3:83372587-83372606 Msa0478580:intron 15.0%
!! ATTAAATAAATTTGTGTGTT+TGG - chr3_3:83372646-83372665 Msa0478580:intron 15.0%
!!! TTCAGTCATATTTTTTGAAT+AGG - chr3_3:83371195-83371214 Msa0478580:CDS 20.0%
!!! TCATATTTTTTGAATAGGTT+AGG - chr3_3:83371200-83371219 Msa0478580:CDS 20.0%
!!! CATATTTTTTGAATAGGTTA+GGG - chr3_3:83371201-83371220 Msa0478580:CDS 20.0%
!!! TAAAGTTATATTGCTTGTTT+TGG - chr3_3:83371578-83371597 Msa0478580:intron 20.0%
!!! CTTTGTATGAATTTTATAAC+GGG - chr3_3:83371841-83371860 Msa0478580:intron 20.0%
!! AATCAATACATAACAATCAA+AGG + chr3_3:83372565-83372584 None:intergenic 20.0%
!! TAAATAAAAGTAATGATAGG+AGG + chr3_3:83373140-83373159 None:intergenic 20.0%
!! GTGTAAATAAAAGTAATGAT+AGG + chr3_3:83373143-83373162 None:intergenic 20.0%
!! TCATAATATAGTTTATCCAA+AGG - chr3_3:83373319-83373338 Msa0478580:CDS 20.0%
!! CATAATATAGTTTATCCAAA+GGG - chr3_3:83373320-83373339 Msa0478580:CDS 20.0%
!!! AATTTTTCTCTCTCTTTTTT+GGG + chr3_3:83373614-83373633 None:intergenic 20.0%
!!! TGTAGTTCAAGAAATTTTTA+TGG - chr3_3:83373671-83373690 Msa0478580:five_prime_UTR 20.0%
!!! GTAGTTCAAGAAATTTTTAT+GGG - chr3_3:83373672-83373691 Msa0478580:five_prime_UTR 20.0%
! TCTTCATGTACCTAAATTAA+TGG - chr3_3:83370584-83370603 Msa0478580:three_prime_UTR 25.0%
! ATCTGAGAAAATTGATATTG+TGG - chr3_3:83371127-83371146 Msa0478580:CDS 25.0%
! ATTGAACATCATAAACTTGA+TGG - chr3_3:83371407-83371426 Msa0478580:intron 25.0%
! TTGAACATCATAAACTTGAT+GGG - chr3_3:83371408-83371427 Msa0478580:intron 25.0%
!!! TGTGTTATACCTACTTTTTT+AGG - chr3_3:83371522-83371541 Msa0478580:intron 25.0%
! AAAACATGCTAATGTAACAA+AGG + chr3_3:83372226-83372245 None:intergenic 25.0%
! GGTGAAAACAAGATTTATAA+AGG + chr3_3:83372259-83372278 None:intergenic 25.0%
! CAGGAAATAAAGTGAAAATA+CGG - chr3_3:83372303-83372322 Msa0478580:intron 25.0%
!!! TTCCCTTTTTAATTAAGTGT+AGG - chr3_3:83372404-83372423 Msa0478580:intron 25.0%
! CTCCTACACTTAATTAAAAA+GGG + chr3_3:83372409-83372428 None:intergenic 25.0%
! GGATTCCATTTCATTAAAAA+AGG + chr3_3:83372595-83372614 None:intergenic 25.0%
!! ATAATACCTTTAACTTTGAC+AGG - chr3_3:83373196-83373215 Msa0478580:CDS 25.0%
! GTTGCAAGAAAATAATGAAT+TGG - chr3_3:83373279-83373298 Msa0478580:CDS 25.0%
!! TGAAAAGTTTGTCTTATTCT+AGG - chr3_3:83373545-83373564 Msa0478580:exon 25.0%
!!! ATTTTTCTCTCTCTTTTTTG+GGG + chr3_3:83373613-83373632 None:intergenic 25.0%
!! GAATTTTTCTCTCTCTTTTT+TGG + chr3_3:83373615-83373634 None:intergenic 25.0%
!!! GGTTTGTTATACTTTTTAAC+TGG - chr3_3:83373693-83373712 Msa0478580:five_prime_UTR 25.0%
! GATCAAAAGACAAGTTAAAT+TGG + chr3_3:83373722-83373741 None:intergenic 25.0%
!! TCATGACAATTTTCTCATAT+TGG - chr3_3:83373740-83373759 Msa0478580:five_prime_UTR 25.0%
!! CATGACAATTTTCTCATATT+GGG - chr3_3:83373741-83373760 Msa0478580:five_prime_UTR 25.0%
! AACTTTGTGCAAGAAAATTT+GGG + chr3_3:83373835-83373854 None:intergenic 25.0%
! TAACTTTGTGCAAGAAAATT+TGG + chr3_3:83373836-83373855 None:intergenic 25.0%
!! TATTGAGAAAGATTTTGCAA+AGG - chr3_3:83373892-83373911 Msa0478580:five_prime_UTR 25.0%
CTGTGTAATGAAGAAATTAC+AGG + chr3_3:83370364-83370383 None:intergenic 30.0%
CTGTAATTTCTTCATTACAC+AGG - chr3_3:83370362-83370381 Msa0478580:three_prime_UTR 30.0%
ATTTCAATCCCTAGATTTCT+AGG - chr3_3:83370551-83370570 Msa0478580:three_prime_UTR 30.0%
TTTCAATCCCTAGATTTCTA+GGG - chr3_3:83370552-83370571 Msa0478580:three_prime_UTR 30.0%
ATTTAGGTACATGAAGAGAT+CGG + chr3_3:83370581-83370600 None:intergenic 30.0%
! TTCTTCGTTGGGTTTTTATT+AGG - chr3_3:83370831-83370850 Msa0478580:CDS 30.0%
TTATTAGGTATGTTCCCTTT+CGG - chr3_3:83370846-83370865 Msa0478580:CDS 30.0%
GCGATTATTGAGAATTGATT+TGG + chr3_3:83370961-83370980 None:intergenic 30.0%
ATAATGAAAAGCTGAAAGAG+AGG - chr3_3:83371093-83371112 Msa0478580:CDS 30.0%
TAATGAAAAGCTGAAAGAGA+GGG - chr3_3:83371094-83371113 Msa0478580:CDS 30.0%
AAAAATATGACTGAAAAGCG+CGG + chr3_3:83371190-83371209 None:intergenic 30.0%
TGCTGAATTGTTGAGAAAAA+CGG - chr3_3:83371295-83371314 Msa0478580:intron 30.0%
AAAAGTAGGTATAACACAAC+AGG + chr3_3:83371520-83371539 None:intergenic 30.0%
!!! AGTTATATTGCTTGTTTTGG+AGG - chr3_3:83371581-83371600 Msa0478580:intron 30.0%
AAAAAACAATCATCAAGGGA+GGG + chr3_3:83371788-83371807 None:intergenic 30.0%
AAAAAAACAATCATCAAGGG+AGG + chr3_3:83371789-83371808 None:intergenic 30.0%
!! TGTATGAATTTTATAACGGG+CGG - chr3_3:83371844-83371863 Msa0478580:intron 30.0%
AGTTATGAAGGTGACATTTA+CGG + chr3_3:83371981-83372000 None:intergenic 30.0%
!!! TAAATTTGCGCCTTGTTTTT+GGG - chr3_3:83372159-83372178 Msa0478580:intron 30.0%
TCGAGAATTTATGAAGGAAA+AGG + chr3_3:83372280-83372299 None:intergenic 30.0%
!! CTGTTTTCGAGAATTTATGA+AGG + chr3_3:83372286-83372305 None:intergenic 30.0%
CTTCATAAATTCTCGAAAAC+AGG - chr3_3:83372284-83372303 Msa0478580:intron 30.0%
!!! ACTTTTTTCCCTTCCATTTT+CGG + chr3_3:83372376-83372395 None:intergenic 30.0%
CCTCCTACACTTAATTAAAA+AGG + chr3_3:83372410-83372429 None:intergenic 30.0%
!! CCTTTTTAATTAAGTGTAGG+AGG - chr3_3:83372407-83372426 Msa0478580:intron 30.0%
TTTAATTAAGTGTAGGAGGA+AGG - chr3_3:83372411-83372430 Msa0478580:intron 30.0%
AAAAACACAATTGCCAAAGA+TGG + chr3_3:83372542-83372561 None:intergenic 30.0%
AAGTTAAATGATGTACACAG+AGG + chr3_3:83372770-83372789 None:intergenic 30.0%
TTGGATGACACAATTCATAA+AGG + chr3_3:83372810-83372829 None:intergenic 30.0%
CAGTTCAACATTAGAACATA+GGG + chr3_3:83372853-83372872 None:intergenic 30.0%
!!! AACTGGTTTTATAGTCGTTT+TGG - chr3_3:83372868-83372887 Msa0478580:CDS 30.0%
AGATTTCATGTTGATATGTC+TGG - chr3_3:83373009-83373028 Msa0478580:CDS 30.0%
GATTTCATGTTGATATGTCT+GGG - chr3_3:83373010-83373029 Msa0478580:CDS 30.0%
TATCAGATAATACGAATTGC+AGG + chr3_3:83373179-83373198 None:intergenic 30.0%
TTCCACCAATTGTTCAATAA+AGG + chr3_3:83373228-83373247 None:intergenic 30.0%
! TTCATTATTTTCTTGCAACC+CGG + chr3_3:83373278-83373297 None:intergenic 30.0%
ATATAGTTTATCCAAAGGGT+TGG - chr3_3:83373324-83373343 Msa0478580:CDS 30.0%
TATCACACACTCTATAGAAT+TGG + chr3_3:83373399-83373418 None:intergenic 30.0%
AATTCTATAGAGTGTGTGAT+AGG - chr3_3:83373398-83373417 Msa0478580:CDS 30.0%
AACTGAGATTTAGAAGTTAG+CGG + chr3_3:83373487-83373506 None:intergenic 30.0%
!!! CTAAATCTCAGTTTTGTTAG+TGG - chr3_3:83373494-83373513 Msa0478580:CDS 30.0%
GGATACTCTTACAATTACAA+CGG + chr3_3:83373571-83373590 None:intergenic 30.0%
!!! TTTTTCTCTCTCTTTTTTGG+GGG + chr3_3:83373612-83373631 None:intergenic 30.0%
AGAAAAATTCCCCATTCTTT+GGG - chr3_3:83373625-83373644 Msa0478580:five_prime_UTR 30.0%
TCTTGAACTACATGAATTTC+AGG + chr3_3:83373663-83373682 None:intergenic 30.0%
! AATATCAGTAACCTGTTTCT+GGG + chr3_3:83373808-83373827 None:intergenic 30.0%
TTCTTCATTACACAGGTTAC+CGG - chr3_3:83370369-83370388 Msa0478580:three_prime_UTR 35.0%
! TTATGAGTATGGATTCGGTT+CGG + chr3_3:83370410-83370429 None:intergenic 35.0%
TGTGGTTATGAGTATGGATT+CGG + chr3_3:83370415-83370434 None:intergenic 35.0%
CACAAACTTCCATCTTCAAA+CGG - chr3_3:83370696-83370715 Msa0478580:three_prime_UTR 35.0%
TCGTCGTTTCAGAGATTAAT+CGG - chr3_3:83370738-83370757 Msa0478580:three_prime_UTR 35.0%
CATGAATGAGATTACCGAAA+GGG + chr3_3:83370863-83370882 None:intergenic 35.0%
TCATGAATGAGATTACCGAA+AGG + chr3_3:83370864-83370883 None:intergenic 35.0%
! TTGTTTTCACGATGTTGTTG+AGG + chr3_3:83370891-83370910 None:intergenic 35.0%
!! ATTGATTTGGCATCAGATTG+TGG + chr3_3:83370948-83370967 None:intergenic 35.0%
TGATGAGGATAAGGATAAGA+AGG - chr3_3:83371019-83371038 Msa0478580:intron 35.0%
GATGAGGATAAGGATAAGAA+GGG - chr3_3:83371020-83371039 Msa0478580:intron 35.0%
AGAAAATTGATATTGTGGCG+AGG - chr3_3:83371132-83371151 Msa0478580:CDS 35.0%
!!! TTTTTTGAATAGGTTAGGGC+AGG - chr3_3:83371205-83371224 Msa0478580:CDS 35.0%
GGAAATGAATTCTGCTTCTA+TGG - chr3_3:83371268-83371287 Msa0478580:intron 35.0%
GCTGAATTGTTGAGAAAAAC+GGG - chr3_3:83371296-83371315 Msa0478580:intron 35.0%
GGTGTGTACTAAGAATTCAA+CGG - chr3_3:83371337-83371356 Msa0478580:intron 35.0%
TAAGAATTCAACGGATGTGA+AGG - chr3_3:83371346-83371365 Msa0478580:intron 35.0%
TCATCAGAGGAATAAAGCAT+TGG - chr3_3:83371379-83371398 Msa0478580:intron 35.0%
TTCAGACAATCAGAGATATC+AGG - chr3_3:83371477-83371496 Msa0478580:intron 35.0%
!!! TATTGCTTGTTTTGGAGGTA+TGG - chr3_3:83371586-83371605 Msa0478580:intron 35.0%
!! ATCGTTTGCCTTTTGTTTGT+TGG - chr3_3:83371630-83371649 Msa0478580:intron 35.0%
ACCAAAAGCCAACAAACAAA+AGG + chr3_3:83371641-83371660 None:intergenic 35.0%
!! ATTTGGGAGTTTGGGTTTTT+GGG - chr3_3:83371756-83371775 Msa0478580:intron 35.0%
!!! GTATGAATTTTATAACGGGC+GGG - chr3_3:83371845-83371864 Msa0478580:intron 35.0%
!!! CTAAATTTGCGCCTTGTTTT+TGG - chr3_3:83372158-83372177 Msa0478580:intron 35.0%
CTTGTGAATACCCAAAAACA+AGG + chr3_3:83372172-83372191 None:intergenic 35.0%
! AATGACGTATTGACCGAAAA+TGG - chr3_3:83372360-83372379 Msa0478580:intron 35.0%
GTAGATACAACTCAGAAAAC+TGG + chr3_3:83372684-83372703 None:intergenic 35.0%
! GTTTTCTGAGTTGTATCTAC+TGG - chr3_3:83372684-83372703 Msa0478580:CDS 35.0%
AAATGATGTACACAGAGGAT+GGG + chr3_3:83372765-83372784 None:intergenic 35.0%
TAAATGATGTACACAGAGGA+TGG + chr3_3:83372766-83372785 None:intergenic 35.0%
TAGGAACTGAATGAACAAGT+TGG + chr3_3:83372829-83372848 None:intergenic 35.0%
CAACATTAGAACATAGGGTT+AGG + chr3_3:83372848-83372867 None:intergenic 35.0%
CCAGTTCAACATTAGAACAT+AGG + chr3_3:83372854-83372873 None:intergenic 35.0%
CCTATGTTCTAATGTTGAAC+TGG - chr3_3:83372851-83372870 Msa0478580:CDS 35.0%
!! TTTATAGTCGTTTTGGCACT+TGG - chr3_3:83372875-83372894 Msa0478580:CDS 35.0%
!! AAAATAGCCTTGTTCTTGCT+TGG + chr3_3:83372919-83372938 None:intergenic 35.0%
! AAGCAAGAACAAGGCTATTT+TGG - chr3_3:83372918-83372937 Msa0478580:CDS 35.0%
!! AAGAACAAGGCTATTTTGGA+GGG - chr3_3:83372922-83372941 Msa0478580:CDS 35.0%
CAATTAGACTCAGTGAAAGA+GGG - chr3_3:83373102-83373121 Msa0478580:CDS 35.0%
ATACGAATTGCAGGTGATAT+GGG + chr3_3:83373170-83373189 None:intergenic 35.0%
AATACGAATTGCAGGTGATA+TGG + chr3_3:83373171-83373190 None:intergenic 35.0%
GACCACCTTTATTGAACAAT+TGG - chr3_3:83373220-83373239 Msa0478580:CDS 35.0%
CACCAATTGTTCAATAAAGG+TGG + chr3_3:83373225-83373244 None:intergenic 35.0%
CACCTTTATTGAACAATTGG+TGG - chr3_3:83373223-83373242 Msa0478580:CDS 35.0%
TATAGAGTGTGTGATAGGTA+TGG - chr3_3:83373403-83373422 Msa0478580:CDS 35.0%
GAGAAAAATTCCCCATTCTT+TGG - chr3_3:83373624-83373643 Msa0478580:five_prime_UTR 35.0%
!! ATGAATTTCAGGTTGTTGCT+GGG + chr3_3:83373652-83373671 None:intergenic 35.0%
CAATATCAGTAACCTGTTTC+TGG + chr3_3:83373809-83373828 None:intergenic 35.0%
TTGCACAAAGTTATTTGCAG+AGG - chr3_3:83373843-83373862 Msa0478580:five_prime_UTR 35.0%
TCGGAAACCCTAGAAATCTA+GGG + chr3_3:83370562-83370581 None:intergenic 40.0%
ATCGGAAACCCTAGAAATCT+AGG + chr3_3:83370563-83370582 None:intergenic 40.0%
CGGAATGACGCCATTAATTT+AGG + chr3_3:83370597-83370616 None:intergenic 40.0%
AATTAATGGCGTCATTCCGA+CGG - chr3_3:83370598-83370617 Msa0478580:three_prime_UTR 40.0%
GAAGATGGAAGTTTGTGAGA+TGG + chr3_3:83370693-83370712 None:intergenic 40.0%
GAGTAGTTTCCGTTTGAAGA+TGG + chr3_3:83370708-83370727 None:intergenic 40.0%
TCGTTTCAGAGATTAATCGG+TGG - chr3_3:83370741-83370760 Msa0478580:three_prime_UTR 40.0%
ATGCGACGATACAATCGAAA+GGG - chr3_3:83370771-83370790 Msa0478580:exon 40.0%
GATACAATCGAAAGGGACAA+TGG - chr3_3:83370778-83370797 Msa0478580:CDS 40.0%
! AATGGCGAAAAGTTGCTTTC+AGG - chr3_3:83370796-83370815 Msa0478580:CDS 40.0%
! TGAAAAGCGCGGTTATAAGT+CGG + chr3_3:83371179-83371198 None:intergenic 40.0%
GAAAAACGGGTGTGATGTAT+AGG - chr3_3:83371309-83371328 Msa0478580:intron 40.0%
!!! GCCTTTTGTTTGTTGGCTTT+TGG - chr3_3:83371637-83371656 Msa0478580:intron 40.0%
TGTCTCAATGCAGTTGTAGT+TGG - chr3_3:83371677-83371696 Msa0478580:intron 40.0%
!!! AGTTGGTACTGTTGGCTTTT+AGG - chr3_3:83371694-83371713 Msa0478580:intron 40.0%
!!! GTTGGTACTGTTGGCTTTTA+GGG - chr3_3:83371695-83371714 Msa0478580:intron 40.0%
ATGTGTAGCATGTAAGTTCG+TGG - chr3_3:83371726-83371745 Msa0478580:intron 40.0%
TGTGTAGCATGTAAGTTCGT+GGG - chr3_3:83371727-83371746 Msa0478580:intron 40.0%
AAGTTCGTGGGATTGTGATT+TGG - chr3_3:83371739-83371758 Msa0478580:intron 40.0%
AGTTCGTGGGATTGTGATTT+GGG - chr3_3:83371740-83371759 Msa0478580:intron 40.0%
! GGATTGTGATTTGGGAGTTT+GGG - chr3_3:83371748-83371767 Msa0478580:intron 40.0%
!! GATTTGGGAGTTTGGGTTTT+TGG - chr3_3:83371755-83371774 Msa0478580:intron 40.0%
CCGTTAGACTACAAGTGTAT+CGG + chr3_3:83371873-83371892 None:intergenic 40.0%
CCGATACACTTGTAGTCTAA+CGG - chr3_3:83371870-83371889 Msa0478580:intron 40.0%
TACACTTGTAGTCTAACGGT+TGG - chr3_3:83371874-83371893 Msa0478580:intron 40.0%
TCTGCATTATCCAATGAGTC+TGG - chr3_3:83371908-83371927 Msa0478580:intron 40.0%
GGTTACAGTTATTGAGGCAT+TGG - chr3_3:83371932-83371951 Msa0478580:intron 40.0%
!! TACAGTTATTGAGGCATTGG+TGG - chr3_3:83371935-83371954 Msa0478580:intron 40.0%
TTGTCGGTAGCAAGTTATGA+AGG + chr3_3:83371993-83372012 None:intergenic 40.0%
!! ATAACTTGCTACCGACAAGT+TGG - chr3_3:83371995-83372014 Msa0478580:intron 40.0%
CTCAAGAACAACCAACTTGT+CGG + chr3_3:83372009-83372028 None:intergenic 40.0%
!! ACAAGTTGGTTGTTCTTGAG+AGG - chr3_3:83372009-83372028 Msa0478580:intron 40.0%
GTTCTTGAGAGGAGTTAATG+TGG - chr3_3:83372020-83372039 Msa0478580:intron 40.0%
GTTAATGTGGCCGAAATTTG+CGG - chr3_3:83372033-83372052 Msa0478580:intron 40.0%
! ACGTATTGACCGAAAATGGA+AGG - chr3_3:83372364-83372383 Msa0478580:intron 40.0%
! CGTATTGACCGAAAATGGAA+GGG - chr3_3:83372365-83372384 Msa0478580:intron 40.0%
ATTAAGTGTAGGAGGAAGGT+AGG - chr3_3:83372415-83372434 Msa0478580:intron 40.0%
TGAACCTTCATTGAAGCATG+TGG + chr3_3:83372468-83372487 None:intergenic 40.0%
GCTTCAATGAAGGTTCATAG+TGG - chr3_3:83372471-83372490 Msa0478580:intron 40.0%
ACACAATTGCCAAAGATGGT+TGG + chr3_3:83372538-83372557 None:intergenic 40.0%
!! CAAGAACAAGGCTATTTTGG+AGG - chr3_3:83372921-83372940 Msa0478580:CDS 40.0%
ATTCAACAGCACAATCCTGT+GGG - chr3_3:83373038-83373057 Msa0478580:CDS 40.0%
GCCCTACTTCAAATCCTATA+CGG - chr3_3:83373079-83373098 Msa0478580:CDS 40.0%
! GCCGTATAGGATTTGAAGTA+GGG + chr3_3:83373083-83373102 None:intergenic 40.0%
! TGCCGTATAGGATTTGAAGT+AGG + chr3_3:83373084-83373103 None:intergenic 40.0%
ACTGAGTCTAATTGCCGTAT+AGG + chr3_3:83373096-83373115 None:intergenic 40.0%
GCAATTAGACTCAGTGAAAG+AGG - chr3_3:83373101-83373120 Msa0478580:CDS 40.0%
TACGAATTGCAGGTGATATG+GGG + chr3_3:83373169-83373188 None:intergenic 40.0%
TGGTCTCCTGTCAAAGTTAA+AGG + chr3_3:83373205-83373224 None:intergenic 40.0%
GAAGATGAGAGTCAAATGGA+AGG - chr3_3:83373245-83373264 Msa0478580:CDS 40.0%
! ATTATTTTCTTGCAACCCGG+TGG + chr3_3:83373275-83373294 None:intergenic 40.0%
CACACACTCTATAGAATTGG+TGG + chr3_3:83373396-83373415 None:intergenic 40.0%
!! CATGAATTTCAGGTTGTTGC+TGG + chr3_3:83373653-83373672 None:intergenic 40.0%
CACAAAGTTATTTGCAGAGG+TGG - chr3_3:83373846-83373865 Msa0478580:five_prime_UTR 40.0%
GGTGTCTGTGGTTATGAGTA+TGG + chr3_3:83370421-83370440 None:intergenic 45.0%
AAGAGAGAGAGAGAGAGAGA+CGG + chr3_3:83370442-83370461 None:intergenic 45.0%
TCTCTCTCTTCACACGAAGA+AGG - chr3_3:83370452-83370471 Msa0478580:three_prime_UTR 45.0%
CACGACCGTCACTACATAAA+CGG - chr3_3:83370639-83370658 Msa0478580:three_prime_UTR 45.0%
AGTTTGTGAGATGGAGACGA+CGG + chr3_3:83370684-83370703 None:intergenic 45.0%
CATGCGACGATACAATCGAA+AGG - chr3_3:83370770-83370789 Msa0478580:exon 45.0%
! TGCGTTCTCTGTTTCTTCGT+TGG - chr3_3:83370819-83370838 Msa0478580:CDS 45.0%
! GCGTTCTCTGTTTCTTCGTT+GGG - chr3_3:83370820-83370839 Msa0478580:CDS 45.0%
! TTGAAAAAGCACGTCAGCGT+CGG - chr3_3:83370984-83371003 Msa0478580:intron 45.0%
! TGGTGGTGATGATGAGGATA+AGG - chr3_3:83371010-83371029 Msa0478580:intron 45.0%
CTCAAACATGAACGCTGAGA+AGG - chr3_3:83371070-83371089 Msa0478580:CDS 45.0%
! ATAGGTTAGGGCAGGTTTTG+AGG - chr3_3:83371213-83371232 Msa0478580:CDS 45.0%
GGGTGTGATGTATAGGCATT+TGG - chr3_3:83371316-83371335 Msa0478580:intron 45.0%
TCAACGGATGTGAAGGATAG+AGG - chr3_3:83371353-83371372 Msa0478580:intron 45.0%
AGGATAGAGGAGTTCATCAG+AGG - chr3_3:83371366-83371385 Msa0478580:intron 45.0%
! GCAGTTGTAGTTGGTACTGT+TGG - chr3_3:83371686-83371705 Msa0478580:intron 45.0%
! GGGATTGTGATTTGGGAGTT+TGG - chr3_3:83371747-83371766 Msa0478580:intron 45.0%
GCATTATCCAATGAGTCTGG+CGG - chr3_3:83371911-83371930 Msa0478580:intron 45.0%
TCTGGCGGTTACAGTTATTG+AGG - chr3_3:83371926-83371945 Msa0478580:intron 45.0%
GCCGAAATTTGCGGTTCTTT+GGG - chr3_3:83372042-83372061 Msa0478580:intron 45.0%
CCCCAAAGAACCGCAAATTT+CGG + chr3_3:83372046-83372065 None:intergenic 45.0%
CCGAAATTTGCGGTTCTTTG+GGG - chr3_3:83372043-83372062 Msa0478580:intron 45.0%
!! GGTTCTTTGGGGCATCAATT+CGG - chr3_3:83372054-83372073 Msa0478580:intron 45.0%
!! GTTCTTTGGGGCATCAATTC+GGG - chr3_3:83372055-83372074 Msa0478580:intron 45.0%
!! TTCTTTGGGGCATCAATTCG+GGG - chr3_3:83372056-83372075 Msa0478580:intron 45.0%
! TCGGGGTTTTTACATACGCA+AGG - chr3_3:83372073-83372092 Msa0478580:intron 45.0%
TGGGTATTCACAAGCTTGTC+TGG - chr3_3:83372178-83372197 Msa0478580:intron 45.0%
GGGTATTCACAAGCTTGTCT+GGG - chr3_3:83372179-83372198 Msa0478580:intron 45.0%
ACTTGGCTTCCATTGCATAC+CGG + chr3_3:83372949-83372968 None:intergenic 45.0%
CATTCAACAGCACAATCCTG+TGG - chr3_3:83373037-83373056 Msa0478580:CDS 45.0%
! CTCAGTGAAAGAGGGTTTTC+AGG - chr3_3:83373110-83373129 Msa0478580:CDS 45.0%
ACGAATTGCAGGTGATATGG+GGG + chr3_3:83373168-83373187 None:intergenic 45.0%
GGTGGAAGATGAGAGTCAAA+TGG - chr3_3:83373241-83373260 Msa0478580:CDS 45.0%
TTCTCAAGCATCCAACCCTT+TGG + chr3_3:83373338-83373357 None:intergenic 45.0%
TGGTGGAAGATTACTTGACG+TGG + chr3_3:83373379-83373398 None:intergenic 45.0%
!!! TCTCTCTCTTTTTTGGGGGA+GGG + chr3_3:83373608-83373627 None:intergenic 45.0%
!!! TTCTCTCTCTTTTTTGGGGG+AGG + chr3_3:83373609-83373628 None:intergenic 45.0%
CAACATAGCATTAGTGCCAC+TGG + chr3_3:83373785-83373804 None:intergenic 45.0%
ATGCTATGTTGCCCAGAAAC+AGG - chr3_3:83373794-83373813 Msa0478580:five_prime_UTR 45.0%
TCGGATCGAGGTTGAAACTC+CGG + chr3_3:83370391-83370410 None:intergenic 50.0%
!! TATGGATTCGGTTCGGATCG+AGG + chr3_3:83370403-83370422 None:intergenic 50.0%
ATTCCGACGGACGTTATCTC+CGG - chr3_3:83370611-83370630 Msa0478580:three_prime_UTR 50.0%
TAGTGACGGTCGTGATATGC+CGG + chr3_3:83370633-83370652 None:intergenic 50.0%
GACCGTCACTACATAAACGG+CGG - chr3_3:83370642-83370661 Msa0478580:three_prime_UTR 50.0%
CACCGCCGTTTATGTAGTGA+CGG + chr3_3:83370647-83370666 None:intergenic 50.0%
AGATGGAGACGACGGTGAAA+AGG + chr3_3:83370676-83370695 None:intergenic 50.0%
!!! GTTAGGGCAGGTTTTGAGGT+TGG - chr3_3:83371217-83371236 Msa0478580:CDS 50.0%
TCCACCACCACCCATAAAAG+CGG + chr3_3:83371251-83371270 None:intergenic 50.0%
ACTGTAACCGCCAGACTCAT+TGG + chr3_3:83371921-83371940 None:intergenic 50.0%
ACGGCGCACAAGTGTTTAAC+TGG + chr3_3:83371962-83371981 None:intergenic 50.0%
GGCCGAAATTTGCGGTTCTT+TGG - chr3_3:83372041-83372060 Msa0478580:intron 50.0%
CAGGCCACATGCTTCAATGA+AGG - chr3_3:83372461-83372480 Msa0478580:intron 50.0%
! CCAAAGATGGTTGGCTCAGT+AGG + chr3_3:83372529-83372548 None:intergenic 50.0%
CCTACTGAGCCAACCATCTT+TGG - chr3_3:83372526-83372545 Msa0478580:intron 50.0%
!! GTTCTTGCTTGGTGCAAGCA+TGG + chr3_3:83372908-83372927 None:intergenic 50.0%
GCTTGCACCAAGCAAGAACA+AGG - chr3_3:83372909-83372928 Msa0478580:CDS 50.0%
!! CAAGGCTATTTTGGAGGGTC+CGG - chr3_3:83372927-83372946 Msa0478580:CDS 50.0%
TGCAATGGAAGCCAAGTGCT+TGG - chr3_3:83372952-83372971 Msa0478580:CDS 50.0%
GCAATGGAAGCCAAGTGCTT+GGG - chr3_3:83372953-83372972 Msa0478580:CDS 50.0%
TTGTATGCCACCCAAGCACT+TGG + chr3_3:83372966-83372985 None:intergenic 50.0%
CAATCCTGTGGGATCCAAAG+CGG - chr3_3:83373049-83373068 Msa0478580:CDS 50.0%
AATTGCAGGTGATATGGGGG+TGG + chr3_3:83373165-83373184 None:intergenic 50.0%
TCAAATGGAAGGTTCGCCAC+CGG - chr3_3:83373256-83373275 Msa0478580:CDS 50.0%
TGACGTGGATGACAGCATCT+AGG + chr3_3:83373364-83373383 None:intergenic 50.0%
!!! TCTCTCTTTTTTGGGGGAGG+GGG + chr3_3:83373606-83373625 None:intergenic 50.0%
!!! CTCTCTCTTTTTTGGGGGAG+GGG + chr3_3:83373607-83373626 None:intergenic 50.0%
TTGCTGGGACCCAAAGAATG+GGG + chr3_3:83373637-83373656 None:intergenic 50.0%
GTTGCTGGGACCCAAAGAAT+GGG + chr3_3:83373638-83373657 None:intergenic 50.0%
TGTTGCTGGGACCCAAAGAA+TGG + chr3_3:83373639-83373658 None:intergenic 50.0%
! CATAGCATTAGTGCCACTGG+TGG + chr3_3:83373782-83373801 None:intergenic 50.0%
AGAGAGAGAGACGGTGTCTG+TGG + chr3_3:83370433-83370452 None:intergenic 55.0%
ATGCCGGAGATAACGTCCGT+CGG + chr3_3:83370617-83370636 None:intergenic 55.0%
CGTCACTACATAAACGGCGG+TGG - chr3_3:83370645-83370664 Msa0478580:three_prime_UTR 55.0%
TGGAGACGACGGTGAAAAGG+CGG + chr3_3:83370673-83370692 None:intergenic 55.0%
! AAAAAGCACGTCAGCGTCGG+TGG - chr3_3:83370987-83371006 Msa0478580:intron 55.0%
ACCACCACCCATAAAAGCGG+CGG + chr3_3:83371248-83371267 None:intergenic 55.0%
ATGTGGCCTGTCTCGACCAT+GGG + chr3_3:83372451-83372470 None:intergenic 55.0%
TTGGAGGGTCCGGTATGCAA+TGG - chr3_3:83372937-83372956 Msa0478580:CDS 55.0%
ATGGAAGCCAAGTGCTTGGG+TGG - chr3_3:83372956-83372975 Msa0478580:CDS 55.0%
CAAATGGAAGGTTCGCCACC+GGG - chr3_3:83373257-83373276 Msa0478580:CDS 55.0%
!!! TTTTTTGGGGGAGGGGGCTA+AGG + chr3_3:83373600-83373619 None:intergenic 55.0%
GCTCATCAGTTAGCCACCAG+TGG - chr3_3:83373766-83373785 Msa0478580:five_prime_UTR 55.0%
!! CGGTGGTGGTGGTGATGATG+AGG - chr3_3:83371004-83371023 Msa0478580:intron 60.0%
ACCACCCATAAAAGCGGCGG+CGG + chr3_3:83371245-83371264 None:intergenic 60.0%
!!! GCCGCTTTTATGGGTGGTGG+TGG - chr3_3:83371247-83371266 Msa0478580:CDS 60.0%
! GGTAGGTTGACCCACTCCCA+TGG - chr3_3:83372432-83372451 Msa0478580:intron 60.0%
CCTGTCTCGACCATGGGAGT+GGG + chr3_3:83372445-83372464 None:intergenic 60.0%
CATGTGGCCTGTCTCGACCA+TGG + chr3_3:83372452-83372471 None:intergenic 60.0%
! CTTGGTGCAAGCATGGCGAC+AGG + chr3_3:83372901-83372920 None:intergenic 60.0%
TCCTGTGGGATCCAAAGCGG+TGG - chr3_3:83373052-83373071 Msa0478580:CDS 60.0%
TGTGGGATCCAAAGCGGTGG+CGG - chr3_3:83373055-83373074 Msa0478580:CDS 60.0%
!! AAGCACGTCAGCGTCGGTGG+TGG - chr3_3:83370990-83371009 Msa0478580:intron 65.0%
!!! TGGTGCCGCCGCCGCTTTTA+TGG - chr3_3:83371237-83371256 Msa0478580:CDS 65.0%
!!! GGTGCCGCCGCCGCTTTTAT+GGG - chr3_3:83371238-83371257 Msa0478580:CDS 65.0%
!!! GCCGCCGCTTTTATGGGTGG+TGG - chr3_3:83371244-83371263 Msa0478580:CDS 65.0%
CCCACTCCCATGGTCGAGAC+AGG - chr3_3:83372442-83372461 Msa0478580:intron 65.0%
GCCTGTCTCGACCATGGGAG+TGG + chr3_3:83372446-83372465 None:intergenic 65.0%
! GCCACCGCTTTGGATCCCAC+AGG + chr3_3:83373056-83373075 None:intergenic 65.0%
GGGAGGGGGCTAAGGATGAC+GGG + chr3_3:83373592-83373611 None:intergenic 65.0%
GGGGAGGGGGCTAAGGATGA+CGG + chr3_3:83373593-83373612 None:intergenic 65.0%
!! CACGTCAGCGTCGGTGGTGG+TGG - chr3_3:83370993-83371012 Msa0478580:intron 70.0%
!!! GCCGCCGCCGCTTTTATGGG+TGG - chr3_3:83371241-83371260 Msa0478580:CDS 70.0%
!! GTAGGGCGCCGCCACCGCTT+TGG + chr3_3:83373066-83373085 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
chr3_3 gene 83370195 83373969 83370195 ID=Msa0478580;Name=Msa0478580
chr3_3 mRNA 83370195 83373969 83370195 ID=Msa0478580-mRNA-1;Parent=Msa0478580;Name=Msa0478580-mRNA-1;_AED=0.00;_eAED=0.00;_QI=408|1|1|1|1|1|3|581|438
chr3_3 exon 83370195 83370946 83370195 ID=Msa0478580-mRNA-1:exon:23399;Parent=Msa0478580-mRNA-1
chr3_3 exon 83371033 83371282 83371033 ID=Msa0478580-mRNA-1:exon:23398;Parent=Msa0478580-mRNA-1
chr3_3 exon 83372666 83373969 83372666 ID=Msa0478580-mRNA-1:exon:23397;Parent=Msa0478580-mRNA-1
chr3_3 five_prime_UTR 83373562 83373969 83373562 ID=Msa0478580-mRNA-1:five_prime_utr;Parent=Msa0478580-mRNA-1
chr3_3 CDS 83372666 83373561 83372666 ID=Msa0478580-mRNA-1:cds;Parent=Msa0478580-mRNA-1
chr3_3 CDS 83371033 83371282 83371033 ID=Msa0478580-mRNA-1:cds;Parent=Msa0478580-mRNA-1
chr3_3 CDS 83370776 83370946 83370776 ID=Msa0478580-mRNA-1:cds;Parent=Msa0478580-mRNA-1
chr3_3 three_prime_UTR 83370195 83370775 83370195 ID=Msa0478580-mRNA-1:three_prime_utr;Parent=Msa0478580-mRNA-1
Gene Sequence

>Msa0478580

ATGGCGTCATTCCGACGGACGTTATCTCCGGCATATCACGACCGTCACTACATAAACGGCGGTGGTGCCGCCTTTTCACCGTCGTCTCCATCTCACAAACTTCCATCTTCAAACGGAAACTACTCTGCAATAGCTTCGTCGTTTCAGAGATTAATCGGTGGCGTTTTCATGCGACGATACAATCGAAAGGGACAATGGCGAAAAGTTGCTTTCAGGTGCGTTCTCTGTTTCTTCGTTGGGTTTTTATTAGGTATGTTCCCTTTCGGTAATCTCATTCATGAAATTCCTCAACAACATCGTGAAAACAACAACAATATCATTGCTTTTGATATCAATAAAACTCCACAATCTGATGCCAAATCAATTCTCAATAATCGCGTTTTGAAAAAGCACGTCAGCGTCGGTGGTGGTGGTGATGATGAGGATAAGGATAAGAAGGGTTTTTTGATTGAACAAGTAAGTTTGAGCTCAAACATGAACGCTGAGAAGGATAATGAAAAGCTGAAAGAGAGGGAATTGATCGAATCTGAGAAAATTGATATTGTGGCGAGGAAGCAATTGATTATTGTGACACCGACTTATAACCGCGCTTTTCAGTCATATTTTTTGAATAGGTTAGGGCAGGTTTTGAGGTTGGTGCCGCCGCCGCTTTTATGGGTGGTGGTGGAAATGAATTCTGCTTCTATGGAAACTGCTGAATTGTTGAGAAAAACGGGTGTGATGTATAGGCATTTGGTGTGTACTAAGAATTCAACGGATGTGAAGGATAGAGGAGTTCATCAGAGGAATAAAGCATTGGAGCATATTGAACATCATAAACTTGATGGGATTGTTTACTTTGCTGATGATGATAATGTATATTCTCTTGAATTGTTTCAGACAATCAGAGATATCAGTCGTTTTGGCACTTGGCCTGTCGCCATGCTTGCACCAAGCAAGAACAAGGCTATTTTGGAGGGTCCGGTATGCAATGGAAGCCAAGTGCTTGGGTGGCATACAAATGAGAAAAGTAAAAGACTTCGAAGATTTCATGTTGATATGTCTGGGTTTGCATTCAACAGCACAATCCTGTGGGATCCAAAGCGGTGGCGGCGCCCTACTTCAAATCCTATACGGCAATTAGACTCAGTGAAAGAGGGTTTTCAGGAGACCACCTTTATTGAACAATTGGTGGAAGATGAGAGTCAAATGGAAGGTTCGCCACCGGGTTGCAAGAAAATAATGAATTGGCATCTTCATTTGAATGTTCATAATATAGTTTATCCAAAGGGTTGGATGCTTGAGAAAAACCTAGATGCTGTCATCCACGTCAAGTAA

Protein sequence

>Msa0478580

MASFRRTLSPAYHDRHYINGGGAAFSPSSPSHKLPSSNGNYSAIASSFQRLIGGVFMRRYNRKGQWRKVAFRCVLCFFVGFLLGMFPFGNLIHEIPQQHRENNNNIIAFDINKTPQSDAKSILNNRVLKKHVSVGGGGDDEDKDKKGFLIEQVSLSSNMNAEKDNEKLKERELIESEKIDIVARKQLIIVTPTYNRAFQSYFLNRLGQVLRLVPPPLLWVVVEMNSASMETAELLRKTGVMYRHLVCTKNSTDVKDRGVHQRNKALEHIEHHKLDGIVYFADDDNVYSLELFQTIRDISRFGTWPVAMLAPSKNKAILEGPVCNGSQVLGWHTNEKSKRLRRFHVDMSGFAFNSTILWDPKRWRRPTSNPIRQLDSVKEGFQETTFIEQLVEDESQMEGSPPGCKKIMNWHLHLNVHNIVYPKGWMLEKNLDAVIHVK*