Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0070430 | Msa1057420 | 0.814353 | 1.608677e-51 | -8.615850e-47 |
| Msa0108870 | Msa1057420 | 0.821038 | 4.993885e-53 | -8.615850e-47 |
| Msa0658480 | Msa1057420 | 0.803546 | 3.311511e-49 | -8.615850e-47 |
| Msa0659990 | Msa1057420 | 0.810248 | 1.266986e-50 | -8.615850e-47 |
| Msa0704800 | Msa1057420 | 0.825001 | 5.945632e-54 | -8.615850e-47 |
| Msa0744090 | Msa1057420 | 0.810882 | 9.239045e-51 | -8.615850e-47 |
| Msa0756930 | Msa1057420 | 0.805846 | 1.095876e-49 | -8.615850e-47 |
| Msa0793420 | Msa1057420 | 0.886751 | 2.604304e-72 | -8.615850e-47 |
| Msa0795660 | Msa1057420 | 0.804132 | 2.501540e-49 | -8.615850e-47 |
| Msa0822170 | Msa1057420 | 0.803010 | 4.274721e-49 | -8.615850e-47 |
| Msa0825280 | Msa1057420 | 0.808664 | 2.771984e-50 | -8.615850e-47 |
| Msa0832820 | Msa1057420 | 0.809679 | 1.679752e-50 | -8.615850e-47 |
| Msa0215360 | Msa1057420 | 0.806511 | 7.939810e-50 | -8.615850e-47 |
| Msa0221600 | Msa1057420 | 0.816573 | 5.159324e-52 | -8.615850e-47 |
| Msa0431770 | Msa1057420 | 0.812075 | 5.088930e-51 | -8.615850e-47 |
| Msa0478580 | Msa1057420 | 0.816451 | 5.494239e-52 | -8.615850e-47 |
| Msa0989280 | Msa1057420 | 0.808352 | 3.231391e-50 | -8.615850e-47 |
| Msa1057420 | Msa1057430 | 0.897831 | 9.596344e-77 | -8.615850e-47 |
| Msa1057420 | Msa1323990 | 0.806664 | 7.370169e-50 | -8.615850e-47 |
| Msa1057420 | Msa1329450 | 0.802727 | 4.890291e-49 | -8.615850e-47 |
| Msa1057420 | Msa1421620 | 0.816238 | 6.129466e-52 | -8.615850e-47 |
| Msa0323510 | Msa1057420 | 0.877804 | 4.684937e-69 | -8.615850e-47 |
| Msa0332750 | Msa1057420 | 0.818057 | 2.390585e-52 | -8.615850e-47 |
| Msa0358510 | Msa1057420 | 0.803412 | 3.529738e-49 | -8.615850e-47 |
| Msa0534080 | Msa1057420 | 0.806392 | 8.412227e-50 | -8.615850e-47 |
| Msa0537530 | Msa1057420 | 0.803416 | 3.523282e-49 | -8.615850e-47 |
| Msa0851470 | Msa1057420 | 0.807583 | 4.709579e-50 | -8.615850e-47 |
| Msa0869010 | Msa1057420 | 0.806707 | 7.216436e-50 | -8.615850e-47 |
| Msa0878380 | Msa1057420 | 0.828693 | 7.803167e-55 | -8.615850e-47 |
| Msa0937120 | Msa1057420 | 0.800289 | 1.545402e-48 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 40 sgRNAs with CRISPR-Local
Find 127 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTTACTTCTCTCATCTTATA+AGG | 0.247292 | 7_2:-39189179 | Msa1057420:CDS |
| ACTGTTGGTGCTGGTGTTGC+TGG | 0.278594 | 7_2:-39188805 | Msa1057420:CDS |
| TTAGTGTTCTGTTGCAAATC+AGG | 0.302736 | 7_2:-39187980 | Msa1057420:intron |
| CGATGTAGGCGAAGTTAATT+CGG | 0.329255 | 7_2:-39188857 | Msa1057420:intron |
| TATTGCTCTGGTTGTACTCT+TGG | 0.344765 | 7_2:-39188782 | Msa1057420:CDS |
| AAAGGTGGTTTCCTATGATA+TGG | 0.387309 | 7_2:-39188014 | Msa1057420:three_prime_UTR |
| TTCATCACATTGGCAATCAT+TGG | 0.392408 | 7_2:+39186975 | None:intergenic |
| GGGTTCAATTTCATTGATGA+TGG | 0.393070 | 7_2:+39189358 | None:intergenic |
| CTCATCAACATATCGGCATC+AGG | 0.407565 | 7_2:-39188340 | Msa1057420:CDS |
| AGAAAGTGAACTGGGAAACT+TGG | 0.423349 | 7_2:-39188193 | Msa1057420:three_prime_UTR |
| ATCTCAACACGCCATATCAT+AGG | 0.436205 | 7_2:+39188003 | None:intergenic |
| ATTGCTCTGGTTGTACTCTT+GGG | 0.449876 | 7_2:-39188781 | Msa1057420:CDS |
| TGGTGTTGCTGGTATTGCTC+TGG | 0.454038 | 7_2:-39188794 | Msa1057420:CDS |
| AATGTTATCACTGTTGGTGC+TGG | 0.466483 | 7_2:-39188814 | Msa1057420:CDS |
| CATTTCCCTCATCAACATAT+CGG | 0.470848 | 7_2:-39188347 | Msa1057420:CDS |
| TCAAGAGCAAGAACTGGAAC+AGG | 0.482132 | 7_2:+39189216 | None:intergenic |
| GCAGTTATCAACATCTTCGT+TGG | 0.491361 | 7_2:-39188384 | Msa1057420:intron |
| CTCTGGTTGTACTCTTGGGA+AGG | 0.498339 | 7_2:-39188777 | Msa1057420:intron |
| ATCAGTGATGATAAGCTAGC+AGG | 0.503324 | 7_2:-39187752 | Msa1057420:three_prime_UTR |
| TGAACAAACATGATGAAAAG+AGG | 0.506916 | 7_2:+39189150 | None:intergenic |
| GAGCAGGAATGTTGTGTGTA+GGG | 0.507902 | 7_2:-39187831 | Msa1057420:three_prime_UTR |
| CAGGCATAAGCAAGTGATGT+AGG | 0.511195 | 7_2:-39187001 | Msa1057420:three_prime_UTR |
| CTGACGTCAAGAGCAAGAAC+TGG | 0.511846 | 7_2:+39189210 | None:intergenic |
| GGTTCAATTTCATTGATGAT+GGG | 0.521972 | 7_2:+39189359 | None:intergenic |
| TCTTGACAAGTGACAAGAGC+AGG | 0.523090 | 7_2:-39187847 | Msa1057420:three_prime_UTR |
| ATATCGGCATCAGGGCAACT+TGG | 0.528755 | 7_2:-39188331 | Msa1057420:intron |
| TTGAGGCTTCTTCATCACAT+TGG | 0.542685 | 7_2:+39186965 | None:intergenic |
| AGAGCAGGAATGTTGTGTGT+AGG | 0.557288 | 7_2:-39187832 | Msa1057420:three_prime_UTR |
| TCAGTGATGATAAGCTAGCA+GGG | 0.587456 | 7_2:-39187751 | Msa1057420:three_prime_UTR |
| TAAGCTAGCAGGGAATTAAG+AGG | 0.588536 | 7_2:-39187741 | Msa1057420:intron |
| TAATTAGAGTTACTCAAAGG+TGG | 0.588769 | 7_2:-39188029 | Msa1057420:three_prime_UTR |
| GATGCTAATGTTATCACTGT+TGG | 0.589755 | 7_2:-39188820 | Msa1057420:CDS |
| AAAAGTTGAGAAAGTGAACT+GGG | 0.600211 | 7_2:-39188201 | Msa1057420:three_prime_UTR |
| TCATCAACATATCGGCATCA+GGG | 0.604907 | 7_2:-39188339 | Msa1057420:CDS |
| GTCTAATTAGAGTTACTCAA+AGG | 0.623856 | 7_2:-39188032 | Msa1057420:three_prime_UTR |
| AACTGGAACAGGAACAACAA+AGG | 0.628523 | 7_2:+39189227 | None:intergenic |
| CTGATGCCGATATGTTGATG+AGG | 0.666580 | 7_2:+39188341 | None:intergenic |
| GTGAACTGGGAAACTTGGAT+AGG | 0.670748 | 7_2:-39188188 | Msa1057420:intron |
| GTATTCGGGAGATATTCTTG+AGG | 0.675734 | 7_2:+39186948 | None:intergenic |
| TGATGCCGATATGTTGATGA+GGG | 0.679239 | 7_2:+39188342 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTATTTTTTTTTTGCATA+TGG | - | chr7_2:39188270-39188289 | Msa1057420:intron | 10.0% |
| !!! | GTAATAATTATTTTACAATA+TGG | - | chr7_2:39188728-39188747 | Msa1057420:intron | 10.0% |
| !!! | TTTATATAATTTTTTCCTAA+AGG | - | chr7_2:39188794-39188813 | Msa1057420:CDS | 10.0% |
| !! | TTACTGGATTTATTATATTT+AGG | - | chr7_2:39187124-39187143 | Msa1057420:intron | 15.0% |
| !! | TACTGGATTTATTATATTTA+GGG | - | chr7_2:39187125-39187144 | Msa1057420:intron | 15.0% |
| !!! | AAGTTTTGATTTGATTTATT+TGG | - | chr7_2:39187500-39187519 | Msa1057420:intron | 15.0% |
| !!! | TATAGATTGATTTTATATCT+GGG | - | chr7_2:39187776-39187795 | Msa1057420:three_prime_UTR | 15.0% |
| !!! | AAAATCTTTTACAAGATTTA+GGG | + | chr7_2:39188925-39188944 | None:intergenic | 15.0% |
| !!! | TAAAATCTTTTACAAGATTT+AGG | + | chr7_2:39188926-39188945 | None:intergenic | 15.0% |
| !! | ACTGGATTTATTATATTTAG+GGG | - | chr7_2:39187126-39187145 | Msa1057420:intron | 20.0% |
| !! | TTACATATAAACAAAACACA+CGG | + | chr7_2:39187685-39187704 | None:intergenic | 20.0% |
| !!! | CTATAGATTGATTTTATATC+TGG | - | chr7_2:39187775-39187794 | Msa1057420:three_prime_UTR | 20.0% |
| !!! | AGTATTTTAGTTACAATTCT+TGG | - | chr7_2:39188128-39188147 | Msa1057420:intron | 20.0% |
| !!! | ATAAATTTTCTCCATTGAAA+AGG | + | chr7_2:39188610-39188629 | None:intergenic | 20.0% |
| !! | TTCATAAAATTACATCCTTT+AGG | + | chr7_2:39188812-39188831 | None:intergenic | 20.0% |
| !!! | GTTTTTTTTTACTATTGTAC+AGG | - | chr7_2:39189177-39189196 | Msa1057420:CDS | 20.0% |
| !!! | ACAATGACTTTTATTGTATT+CGG | + | chr7_2:39189267-39189286 | None:intergenic | 20.0% |
| !! | AAAATCTGGAACTTAACTAA+CGG | + | chr7_2:39186864-39186883 | None:intergenic | 25.0% |
| ! | AAAATAATTCTGATGAGATG+AGG | + | chr7_2:39187106-39187125 | None:intergenic | 25.0% |
| !!! | TCTCATCAGAATTATTTTAC+TGG | - | chr7_2:39187108-39187127 | Msa1057420:intron | 25.0% |
| !! | CTTAAGAAGTGTAATTATGA+AGG | - | chr7_2:39187291-39187310 | Msa1057420:intron | 25.0% |
| ! | GTTAATTCGGAAAAATTCAA+CGG | - | chr7_2:39187353-39187372 | Msa1057420:intron | 25.0% |
| ! | TTGTAATTTAGTCAAACCAT+TGG | - | chr7_2:39187445-39187464 | Msa1057420:intron | 25.0% |
| ! | AATGAAACAAACAGGAAAAT+AGG | + | chr7_2:39187661-39187680 | None:intergenic | 25.0% |
| ! | AAGTGAGAATAATAAAGACA+AGG | + | chr7_2:39187925-39187944 | None:intergenic | 25.0% |
| !! | GTCTTTATTATTCTCACTTT+TGG | - | chr7_2:39187926-39187945 | Msa1057420:intron | 25.0% |
| !! | AAATATGCATAAAAAAGTGC+AGG | + | chr7_2:39188250-39188269 | None:intergenic | 25.0% |
| ! | TATGGTATACTTATTTGAGT+AGG | - | chr7_2:39188288-39188307 | Msa1057420:intron | 25.0% |
| !!! | CTCTATTTTTTGCTGATTAA+TGG | - | chr7_2:39188394-39188413 | Msa1057420:intron | 25.0% |
| !!! | GAAGAGTTTAATTTGTTTTG+TGG | - | chr7_2:39188490-39188509 | Msa1057420:intron | 25.0% |
| !! | AGTTTCTTTAACCTTTTCAA+TGG | - | chr7_2:39188596-39188615 | Msa1057420:intron | 25.0% |
| ! | TTATCAGCTTCATTACTAAA+CGG | - | chr7_2:39188626-39188645 | Msa1057420:intron | 25.0% |
| !!! | TTATGTGACATTCAAGTTTT+AGG | + | chr7_2:39188849-39188868 | None:intergenic | 25.0% |
| !!! | TTGATGATTTTGACATTGAA+TGG | - | chr7_2:39189132-39189151 | Msa1057420:intron | 25.0% |
| !! | CAATGACTTTTATTGTATTC+GGG | + | chr7_2:39189266-39189285 | None:intergenic | 25.0% |
| ! | GGTTCAATTTCATTGATGAT+GGG | + | chr7_2:39186841-39186860 | None:intergenic | 30.0% |
| ! | AAATCTGGAACTTAACTAAC+GGG | + | chr7_2:39186863-39186882 | None:intergenic | 30.0% |
| ! | GTTAAGTTCCAGATTTTCAA+TGG | - | chr7_2:39186867-39186886 | Msa1057420:three_prime_UTR | 30.0% |
| ! | AAATCAACAAAATCTGGAAC+AGG | + | chr7_2:39186921-39186940 | None:intergenic | 30.0% |
| GTTACTTCTCTCATCTTATA+AGG | - | chr7_2:39187018-39187037 | Msa1057420:intron | 30.0% | |
| TGAACAAACATGATGAAAAG+AGG | + | chr7_2:39187050-39187069 | None:intergenic | 30.0% | |
| ATATTTAGGGGATAGAATGA+AGG | - | chr7_2:39187138-39187157 | Msa1057420:intron | 30.0% | |
| ! | ACTTCTTAAGCATCTTTTCA+AGG | + | chr7_2:39187281-39187300 | None:intergenic | 30.0% |
| ! | GTTCACTTTCTCAACTTTTT+GGG | + | chr7_2:39187995-39188014 | None:intergenic | 30.0% |
| ! | AGTTCACTTTCTCAACTTTT+TGG | + | chr7_2:39187996-39188015 | None:intergenic | 30.0% |
| AAAAAGTTGAGAAAGTGAAC+TGG | - | chr7_2:39187995-39188014 | Msa1057420:three_prime_UTR | 30.0% | |
| AAAAGTTGAGAAAGTGAACT+GGG | - | chr7_2:39187996-39188015 | Msa1057420:three_prime_UTR | 30.0% | |
| GTCTAATTAGAGTTACTCAA+AGG | - | chr7_2:39188165-39188184 | Msa1057420:intron | 30.0% | |
| TAATTAGAGTTACTCAAAGG+TGG | - | chr7_2:39188168-39188187 | Msa1057420:intron | 30.0% | |
| ! | GAATTAAGAGGTATGGATTA+TGG | - | chr7_2:39188468-39188487 | Msa1057420:intron | 30.0% |
| ! | GGTTAGTTAGTTGAATAAGA+TGG | - | chr7_2:39188511-39188530 | Msa1057420:intron | 30.0% |
| GGGTTCAATTTCATTGATGA+TGG | + | chr7_2:39186842-39186861 | None:intergenic | 35.0% | |
| ! | AATCTGGAACTTAACTAACG+GGG | + | chr7_2:39186862-39186881 | None:intergenic | 35.0% |
| ACGCGAAAATCAACAAAATC+TGG | + | chr7_2:39186927-39186946 | None:intergenic | 35.0% | |
| AAGTTCGTTCAATCACAAGT+GGG | - | chr7_2:39187069-39187088 | Msa1057420:intron | 35.0% | |
| ! | TGAAGGTGATTCTTGTGTTT+TGG | - | chr7_2:39187155-39187174 | Msa1057420:intron | 35.0% |
| ! | GAAGGTGATTCTTGTGTTTT+GGG | - | chr7_2:39187156-39187175 | Msa1057420:intron | 35.0% |
| ATTGTGACGATTATCGATGT+AGG | - | chr7_2:39187326-39187345 | Msa1057420:intron | 35.0% | |
| GATGCTAATGTTATCACTGT+TGG | - | chr7_2:39187377-39187396 | Msa1057420:intron | 35.0% | |
| ACAAGCAGCAAATTCAATCA+AGG | + | chr7_2:39187614-39187633 | None:intergenic | 35.0% | |
| CATTTCCCTCATCAACATAT+CGG | - | chr7_2:39187850-39187869 | Msa1057420:three_prime_UTR | 35.0% | |
| AGGAATGTGAAAGACAAAAG+TGG | + | chr7_2:39187905-39187924 | None:intergenic | 35.0% | |
| !! | TCTCACTTTTGGTTAAATGC+AGG | - | chr7_2:39187937-39187956 | Msa1057420:intron | 35.0% |
| AAAGGTGGTTTCCTATGATA+TGG | - | chr7_2:39188183-39188202 | Msa1057420:intron | 35.0% | |
| TTAGTGTTCTGTTGCAAATC+AGG | - | chr7_2:39188217-39188236 | Msa1057420:three_prime_UTR | 35.0% | |
| TTCATATGCTTCATCACTTG+AGG | + | chr7_2:39188542-39188561 | None:intergenic | 35.0% | |
| !! | CTAGCTATACTGTTGTTTCA+AGG | - | chr7_2:39188679-39188698 | Msa1057420:intron | 35.0% |
| ! | ACAATATGGCTTGTCTTTGA+TGG | - | chr7_2:39188742-39188761 | Msa1057420:intron | 35.0% |
| !!! | GACATTCAAGTTTTAGGTCA+CGG | + | chr7_2:39188843-39188862 | None:intergenic | 35.0% |
| TGTCACATAAAATCATGCAC+AGG | - | chr7_2:39188859-39188878 | Msa1057420:intron | 35.0% | |
| CAAATGTGATGTAGAACAGA+AGG | - | chr7_2:39189052-39189071 | Msa1057420:intron | 35.0% | |
| TTCATCACATTGGCAATCAT+TGG | + | chr7_2:39189225-39189244 | None:intergenic | 35.0% | |
| GAACAGGACCATTGAAAATC+TGG | + | chr7_2:39186878-39186897 | None:intergenic | 40.0% | |
| ! | AATCTGGAACAGGAACAACA+CGG | + | chr7_2:39186911-39186930 | None:intergenic | 40.0% |
| AACTGGAACAGGAACAACAA+AGG | + | chr7_2:39186973-39186992 | None:intergenic | 40.0% | |
| CAAGTTCGTTCAATCACAAG+TGG | - | chr7_2:39187068-39187087 | Msa1057420:intron | 40.0% | |
| !!! | ATTCTTGTGTTTTGGGAGGT+AGG | - | chr7_2:39187163-39187182 | Msa1057420:intron | 40.0% |
| TTGGGAGGTAGGAGTAAAAA+TGG | - | chr7_2:39187174-39187193 | Msa1057420:intron | 40.0% | |
| GTTGGATGGCAAATTCTTGT+TGG | + | chr7_2:39187246-39187265 | None:intergenic | 40.0% | |
| CAAGAATTTGCCATCCAACA+TGG | - | chr7_2:39187247-39187266 | Msa1057420:intron | 40.0% | |
| TCAAGGATCTTAAGCCATGT+TGG | + | chr7_2:39187264-39187283 | None:intergenic | 40.0% | |
| CGATGTAGGCGAAGTTAATT+CGG | - | chr7_2:39187340-39187359 | Msa1057420:intron | 40.0% | |
| AATGTTATCACTGTTGGTGC+TGG | - | chr7_2:39187383-39187402 | Msa1057420:intron | 40.0% | |
| TATTGCTCTGGTTGTACTCT+TGG | - | chr7_2:39187415-39187434 | Msa1057420:intron | 40.0% | |
| ATTGCTCTGGTTGTACTCTT+GGG | - | chr7_2:39187416-39187435 | Msa1057420:intron | 40.0% | |
| AGAGATGAACTTGGATCCAA+TGG | + | chr7_2:39187464-39187483 | None:intergenic | 40.0% | |
| CATGCAACAAGAGATGAACT+TGG | + | chr7_2:39187473-39187492 | None:intergenic | 40.0% | |
| CACACGGAAATGAAACAAAC+AGG | + | chr7_2:39187669-39187688 | None:intergenic | 40.0% | |
| GCAGTTATCAACATCTTCGT+TGG | - | chr7_2:39187813-39187832 | Msa1057420:three_prime_UTR | 40.0% | |
| ! | TGATGCCGATATGTTGATGA+GGG | + | chr7_2:39187858-39187877 | None:intergenic | 40.0% |
| TCATCAACATATCGGCATCA+GGG | - | chr7_2:39187858-39187877 | Msa1057420:three_prime_UTR | 40.0% | |
| AGAAAGTGAACTGGGAAACT+TGG | - | chr7_2:39188004-39188023 | Msa1057420:three_prime_UTR | 40.0% | |
| ATCTCAACACGCCATATCAT+AGG | + | chr7_2:39188197-39188216 | None:intergenic | 40.0% | |
| TGAGTAGGAATGTTGTGTGT+AGG | - | chr7_2:39188303-39188322 | Msa1057420:intron | 40.0% | |
| GAGTAGGAATGTTGTGTGTA+GGG | - | chr7_2:39188304-39188323 | Msa1057420:intron | 40.0% | |
| ATCAGTGATGATAAGCTAGC+AGG | - | chr7_2:39188445-39188464 | Msa1057420:intron | 40.0% | |
| TCAGTGATGATAAGCTAGCA+GGG | - | chr7_2:39188446-39188465 | Msa1057420:intron | 40.0% | |
| TAAGCTAGCAGGGAATTAAG+AGG | - | chr7_2:39188456-39188475 | Msa1057420:intron | 40.0% | |
| TAGCAGGGAATTAAGAGGTA+TGG | - | chr7_2:39188461-39188480 | Msa1057420:intron | 40.0% | |
| GGTAATCCTCGTTGTAGTTA+AGG | - | chr7_2:39188647-39188666 | Msa1057420:intron | 40.0% | |
| TCAAGTCCTTAACTACAACG+AGG | + | chr7_2:39188656-39188675 | None:intergenic | 40.0% | |
| TTACTAGTGACCTCTAGTGT+TGG | - | chr7_2:39188989-39189008 | Msa1057420:intron | 40.0% | |
| TACTAGTGACCTCTAGTGTT+GGG | - | chr7_2:39188990-39189009 | Msa1057420:intron | 40.0% | |
| TTGAGGCTTCTTCATCACAT+TGG | + | chr7_2:39189235-39189254 | None:intergenic | 40.0% | |
| GTATTCGGGAGATATTCTTG+AGG | + | chr7_2:39189252-39189271 | None:intergenic | 40.0% | |
| ACAAAGGCGATGAGAAAAGC+TGG | + | chr7_2:39186957-39186976 | None:intergenic | 45.0% | |
| TCAAGAGCAAGAACTGGAAC+AGG | + | chr7_2:39186984-39187003 | None:intergenic | 45.0% | |
| !! | GGTGATTCTTGTGTTTTGGG+AGG | - | chr7_2:39187159-39187178 | Msa1057420:intron | 45.0% |
| GGATCTTAAGCCATGTTGGA+TGG | + | chr7_2:39187260-39187279 | None:intergenic | 45.0% | |
| CTGATGCCGATATGTTGATG+AGG | + | chr7_2:39187859-39187878 | None:intergenic | 45.0% | |
| CTCATCAACATATCGGCATC+AGG | - | chr7_2:39187857-39187876 | Msa1057420:three_prime_UTR | 45.0% | |
| GTGAACTGGGAAACTTGGAT+AGG | - | chr7_2:39188009-39188028 | Msa1057420:three_prime_UTR | 45.0% | |
| TCTTGACAAGTGACAAGAGC+AGG | - | chr7_2:39188350-39188369 | Msa1057420:CDS | 45.0% | |
| AGAGCAGGAATGTTGTGTGT+AGG | - | chr7_2:39188365-39188384 | Msa1057420:CDS | 45.0% | |
| GAGCAGGAATGTTGTGTGTA+GGG | - | chr7_2:39188366-39188385 | Msa1057420:CDS | 45.0% | |
| ! | GGCTTGTCTTTGATGGCTAT+TGG | - | chr7_2:39188749-39188768 | Msa1057420:intron | 45.0% |
| TTGATTGTGCCCAACACTAG+AGG | + | chr7_2:39189002-39189021 | None:intergenic | 45.0% | |
| ! | CTAGTGTTGGGCACAATCAA+TGG | - | chr7_2:39189002-39189021 | Msa1057420:intron | 45.0% |
| CAGGCATAAGCAAGTGATGT+AGG | - | chr7_2:39189196-39189215 | Msa1057420:CDS | 45.0% | |
| ACACGGTGGAAAACTGGAAC+AGG | + | chr7_2:39186894-39186913 | None:intergenic | 50.0% | |
| GGAACAACACGGTGGAAAAC+TGG | + | chr7_2:39186900-39186919 | None:intergenic | 50.0% | |
| CTGACGTCAAGAGCAAGAAC+TGG | + | chr7_2:39186990-39187009 | None:intergenic | 50.0% | |
| !! | TGGTGTTGCTGGTATTGCTC+TGG | - | chr7_2:39187403-39187422 | Msa1057420:intron | 50.0% |
| CTCTGGTTGTACTCTTGGGA+AGG | - | chr7_2:39187420-39187439 | Msa1057420:intron | 50.0% | |
| ATATCGGCATCAGGGCAACT+TGG | - | chr7_2:39187866-39187885 | Msa1057420:three_prime_UTR | 50.0% | |
| CTGGAACAGGAACAACACGG+TGG | + | chr7_2:39186908-39186927 | None:intergenic | 55.0% | |
| !! | ACTGTTGGTGCTGGTGTTGC+TGG | - | chr7_2:39187392-39187411 | Msa1057420:intron | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_2 | gene | 39186826 | 39189393 | 39186826 | ID=Msa1057420;Name=Msa1057420 |
| chr7_2 | mRNA | 39186826 | 39189393 | 39186826 | ID=Msa1057420-mRNA-1;Parent=Msa1057420;Name=Msa1057420-mRNA-1;_AED=0.20;_eAED=0.32;_QI=0|0.71|0.75|1|0.57|0.62|8|488|114 |
| chr7_2 | exon | 39186826 | 39187020 | 39186826 | ID=Msa1057420-mRNA-1:exon:7345;Parent=Msa1057420-mRNA-1 |
| chr7_2 | exon | 39187742 | 39187894 | 39187742 | ID=Msa1057420-mRNA-1:exon:7344;Parent=Msa1057420-mRNA-1 |
| chr7_2 | exon | 39187981 | 39188062 | 39187981 | ID=Msa1057420-mRNA-1:exon:7343;Parent=Msa1057420-mRNA-1 |
| chr7_2 | exon | 39188189 | 39188260 | 39188189 | ID=Msa1057420-mRNA-1:exon:7342;Parent=Msa1057420-mRNA-1 |
| chr7_2 | exon | 39188332 | 39188402 | 39188332 | ID=Msa1057420-mRNA-1:exon:7341;Parent=Msa1057420-mRNA-1 |
| chr7_2 | exon | 39188778 | 39188871 | 39188778 | ID=Msa1057420-mRNA-1:exon:7340;Parent=Msa1057420-mRNA-1 |
| chr7_2 | exon | 39189133 | 39189261 | 39189133 | ID=Msa1057420-mRNA-1:exon:7339;Parent=Msa1057420-mRNA-1 |
| chr7_2 | exon | 39189357 | 39189393 | 39189357 | ID=Msa1057420-mRNA-1:exon:7338;Parent=Msa1057420-mRNA-1 |
| chr7_2 | CDS | 39189357 | 39189393 | 39189357 | ID=Msa1057420-mRNA-1:cds;Parent=Msa1057420-mRNA-1 |
| chr7_2 | CDS | 39189133 | 39189261 | 39189133 | ID=Msa1057420-mRNA-1:cds;Parent=Msa1057420-mRNA-1 |
| chr7_2 | CDS | 39188778 | 39188871 | 39188778 | ID=Msa1057420-mRNA-1:cds;Parent=Msa1057420-mRNA-1 |
| chr7_2 | CDS | 39188332 | 39188402 | 39188332 | ID=Msa1057420-mRNA-1:cds;Parent=Msa1057420-mRNA-1 |
| chr7_2 | CDS | 39188247 | 39188260 | 39188247 | ID=Msa1057420-mRNA-1:cds;Parent=Msa1057420-mRNA-1 |
| chr7_2 | three_prime_UTR | 39188189 | 39188246 | 39188189 | ID=Msa1057420-mRNA-1:three_prime_utr;Parent=Msa1057420-mRNA-1 |
| chr7_2 | three_prime_UTR | 39187981 | 39188062 | 39187981 | ID=Msa1057420-mRNA-1:three_prime_utr;Parent=Msa1057420-mRNA-1 |
| chr7_2 | three_prime_UTR | 39187742 | 39187894 | 39187742 | ID=Msa1057420-mRNA-1:three_prime_utr;Parent=Msa1057420-mRNA-1 |
| chr7_2 | three_prime_UTR | 39186826 | 39187020 | 39186826 | ID=Msa1057420-mRNA-1:three_prime_utr;Parent=Msa1057420-mRNA-1 |
| Gene Sequence |
| Protein sequence |
