Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0878820 | XP_013451571.1 | 99.016 | 305 | 3 | 0 | 1 | 305 | 1 | 305 | 0.0 | 616 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0878820 | sp|Q9SRV7|SY131_ARATH | 73.856 | 306 | 79 | 1 | 1 | 305 | 1 | 306 | 1.04e-155 | 440 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0878820 | I3T5G8 | 99.016 | 305 | 3 | 0 | 1 | 305 | 1 | 305 | 0.0 | 616 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0625780 | Msa0878820 | 0.804395 | 2.205666e-49 | -8.615850e-47 |
| Msa0585840 | Msa0878820 | 0.806406 | 8.354191e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0878820 | MtrunA17_Chr6g0461261 | 99.016 | 305 | 3 | 0 | 1 | 305 | 1 | 305 | 0.0 | 616 |
| Msa0878820 | MtrunA17_Chr2g0322801 | 62.171 | 304 | 110 | 3 | 1 | 299 | 1 | 304 | 8.73e-124 | 356 |
| Msa0878820 | MtrunA17_Chr4g0048121 | 48.592 | 284 | 138 | 2 | 1 | 280 | 1 | 280 | 5.11e-91 | 273 |
| Msa0878820 | MtrunA17_Chr2g0281201 | 48.780 | 246 | 126 | 0 | 51 | 296 | 4 | 249 | 3.66e-87 | 261 |
| Msa0878820 | MtrunA17_Chr1g0177121 | 44.792 | 288 | 148 | 3 | 1 | 279 | 1 | 286 | 1.26e-79 | 244 |
| Msa0878820 | MtrunA17_Chr1g0177131 | 47.388 | 268 | 141 | 0 | 32 | 299 | 43 | 310 | 1.32e-79 | 245 |
| Msa0878820 | MtrunA17_Chr5g0398891 | 40.878 | 296 | 157 | 2 | 1 | 278 | 1 | 296 | 1.81e-73 | 228 |
| Msa0878820 | MtrunA17_Chr7g0267551 | 44.939 | 247 | 136 | 0 | 34 | 280 | 28 | 274 | 1.05e-70 | 221 |
| Msa0878820 | MtrunA17_Chr5g0404401 | 32.867 | 286 | 173 | 4 | 1 | 277 | 1 | 276 | 8.14e-43 | 149 |
| Msa0878820 | MtrunA17_Chr2g0322811 | 31.000 | 100 | 58 | 2 | 206 | 299 | 80 | 174 | 6.23e-12 | 63.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0878820 | AT3G03800.2 | 73.856 | 306 | 79 | 1 | 1 | 305 | 1 | 306 | 2.57e-157 | 441 |
| Msa0878820 | AT3G03800.1 | 73.856 | 306 | 79 | 1 | 1 | 305 | 1 | 306 | 2.57e-157 | 441 |
| Msa0878820 | AT5G08080.1 | 75.000 | 304 | 72 | 2 | 1 | 302 | 1 | 302 | 1.77e-141 | 401 |
| Msa0878820 | AT5G08080.4 | 75.000 | 304 | 72 | 2 | 1 | 302 | 1 | 302 | 1.77e-141 | 401 |
| Msa0878820 | AT5G08080.3 | 71.111 | 315 | 76 | 4 | 1 | 302 | 1 | 313 | 1.24e-138 | 394 |
| Msa0878820 | AT4G03330.1 | 49.296 | 284 | 138 | 2 | 1 | 280 | 1 | 282 | 1.82e-89 | 269 |
| Msa0878820 | AT3G11820.1 | 48.421 | 285 | 146 | 1 | 16 | 299 | 25 | 309 | 9.91e-87 | 264 |
| Msa0878820 | AT5G08080.5 | 72.772 | 202 | 51 | 2 | 1 | 200 | 1 | 200 | 1.13e-86 | 259 |
| Msa0878820 | AT5G08080.2 | 72.772 | 202 | 51 | 2 | 1 | 200 | 1 | 200 | 1.13e-86 | 259 |
| Msa0878820 | AT1G11250.1 | 47.500 | 280 | 141 | 2 | 1 | 280 | 1 | 274 | 3.11e-86 | 261 |
| Msa0878820 | AT1G61290.1 | 43.421 | 304 | 162 | 3 | 1 | 300 | 1 | 298 | 3.20e-86 | 261 |
| Msa0878820 | AT1G61290.2 | 43.421 | 304 | 162 | 3 | 1 | 300 | 1 | 298 | 3.20e-86 | 261 |
| Msa0878820 | AT3G11820.2 | 49.265 | 272 | 138 | 0 | 28 | 299 | 7 | 278 | 6.93e-85 | 258 |
| Msa0878820 | AT3G52400.1 | 46.753 | 308 | 155 | 2 | 1 | 299 | 1 | 308 | 4.88e-80 | 246 |
| Msa0878820 | AT1G08560.1 | 38.966 | 290 | 161 | 5 | 1 | 278 | 1 | 286 | 4.73e-64 | 204 |
| Msa0878820 | AT2G18260.2 | 33.762 | 311 | 182 | 8 | 1 | 294 | 1 | 304 | 3.04e-50 | 169 |
| Msa0878820 | AT2G18260.1 | 33.762 | 311 | 182 | 8 | 1 | 294 | 1 | 304 | 3.04e-50 | 169 |
Find 73 sgRNAs with CRISPR-Local
Find 250 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTTGCATCTTCTTTGCCTTT+TGG | 0.201747 | 6_1:-20305841 | None:intergenic |
| GGAGAAGATGGCTGAATTTC+AGG | 0.218009 | 6_1:+20304579 | Msa0878820:CDS |
| CATGTCTTTGCAGACATTTA+TGG | 0.234570 | 6_1:+20305434 | Msa0878820:intron |
| AGTACATTAATCTCTTTAAA+AGG | 0.236901 | 6_1:-20306068 | None:intergenic |
| CTTGGATAGTTTCTTCAAAA+AGG | 0.237559 | 6_1:+20303418 | Msa0878820:CDS |
| CAAACCATGGGTTACCAAAA+AGG | 0.240236 | 6_1:+20305940 | Msa0878820:CDS |
| TGCAAAGAAACTCAAGAAAA+TGG | 0.259809 | 6_1:+20305858 | Msa0878820:CDS |
| GACATTGAGTTGGGAGAATA+TGG | 0.285392 | 6_1:+20303374 | Msa0878820:CDS |
| GTTGAGAGACGCGTATTTAC+AGG | 0.291706 | 6_1:+20304728 | Msa0878820:CDS |
| GGAGAATATGGAAGGAATTC+AGG | 0.293975 | 6_1:+20303386 | Msa0878820:CDS |
| CTTGTTCCTGAATAGCCTTC+TGG | 0.311534 | 6_1:-20305113 | None:intergenic |
| AGGAGCTTTGGTCACAGCTT+TGG | 0.343471 | 6_1:-20303809 | None:intergenic |
| ATCATTCATTGTTGGTGAAA+AGG | 0.353109 | 6_1:-20301631 | None:intergenic |
| CTTCATGGATGGCTTCTCTC+AGG | 0.356838 | 6_1:-20304691 | None:intergenic |
| ACCCTTCATGGCAGGAGCTT+TGG | 0.358201 | 6_1:-20303821 | None:intergenic |
| TTTGTCTAGCTCTTCAACTT+TGG | 0.365108 | 6_1:-20304076 | None:intergenic |
| TTATACTAACTAACCCTTCA+TGG | 0.370897 | 6_1:-20303833 | None:intergenic |
| CAACCTCACGATATTCTTCA+TGG | 0.383779 | 6_1:-20304706 | None:intergenic |
| GAAAATTTGTTCGCTGTCTC+CGG | 0.396264 | 6_1:-20305091 | None:intergenic |
| TTACCTGGAGCTTTCTCAAA+AGG | 0.414308 | 6_1:-20303664 | None:intergenic |
| TCACAGCTTTGGACTCCTCA+TGG | 0.432679 | 6_1:-20303798 | None:intergenic |
| TCATTCATTGTTGGTGAAAA+GGG | 0.437174 | 6_1:-20301630 | None:intergenic |
| CAAAAGCCTGCTTGTGGGAA+AGG | 0.450864 | 6_1:+20304199 | Msa0878820:CDS |
| AAAGAGAGAGAATTTGAAGC+TGG | 0.459053 | 6_1:-20301581 | None:intergenic |
| GAAACTGCTTGATTTACAAC+AGG | 0.463087 | 6_1:+20305344 | Msa0878820:CDS |
| GTTAGAAGATCATTCATTGT+TGG | 0.476131 | 6_1:-20301639 | None:intergenic |
| CTCTTCATCAGCTCTTGCGC+CGG | 0.479421 | 6_1:-20304964 | None:intergenic |
| ATCCCTCGTGGTCGTGGAGG+TGG | 0.479586 | 6_1:+20303350 | Msa0878820:CDS |
| TTCATGGATGGCTTCTCTCA+GGG | 0.480734 | 6_1:-20304690 | None:intergenic |
| TTTGAGATCCCTCGTGGTCG+TGG | 0.486500 | 6_1:+20303344 | Msa0878820:CDS |
| ATAGACAAAAGCCTGCTTGT+GGG | 0.489101 | 6_1:+20304194 | Msa0878820:CDS |
| CACAGCTTTGGACTCCTCAT+GGG | 0.496697 | 6_1:-20303797 | None:intergenic |
| GGAAGGAATTCAGGAGAGCT+TGG | 0.498053 | 6_1:+20303395 | Msa0878820:CDS |
| CTATTAATACTTAATTGTTG+TGG | 0.498958 | 6_1:-20305992 | None:intergenic |
| GCTGATCCTTTCCCACAAGC+AGG | 0.500760 | 6_1:-20304205 | None:intergenic |
| GACCAAAGCTCCTGCCATGA+AGG | 0.502565 | 6_1:+20303819 | Msa0878820:CDS |
| GTCGTTCTTGAATTTCTGCA+AGG | 0.506487 | 6_1:-20305296 | None:intergenic |
| AAAGAAACTGAAGGAGAAGA+TGG | 0.512507 | 6_1:+20304567 | Msa0878820:CDS |
| TGCAGCTATAAAGCAGAGAA+TGG | 0.520725 | 6_1:+20304008 | Msa0878820:intron |
| AGGCAATAATTCCCTCCAAA+AGG | 0.521264 | 6_1:+20305826 | Msa0878820:CDS |
| TGGAGGTGGTGACATTGAGT+TGG | 0.525299 | 6_1:+20303364 | Msa0878820:CDS |
| TCAGGAACAAGGACGAGGCC+AGG | 0.529870 | 6_1:+20305125 | Msa0878820:CDS |
| CTCACGATATTCTTCATGGA+TGG | 0.530670 | 6_1:-20304702 | None:intergenic |
| TGTTTCTGTCATCAAACCAT+GGG | 0.533401 | 6_1:+20305928 | Msa0878820:CDS |
| TCGTTCTTGAATTTCTGCAA+GGG | 0.536427 | 6_1:-20305295 | None:intergenic |
| ATTGACAGATTAATTGAGAC+CGG | 0.539615 | 6_1:+20305072 | Msa0878820:CDS |
| GAATTCAGGAGAGCTTGGCT+TGG | 0.539903 | 6_1:+20303400 | Msa0878820:CDS |
| TTGTTTCTGTCATCAAACCA+TGG | 0.549299 | 6_1:+20305927 | Msa0878820:CDS |
| ACTAACTAACCCTTCATGGC+AGG | 0.553497 | 6_1:-20303829 | None:intergenic |
| TTCATTGTTGGTGAAAAGGG+TGG | 0.553741 | 6_1:-20301627 | None:intergenic |
| AGTTGAAGAGCTAGACAAAG+AGG | 0.554537 | 6_1:+20304080 | Msa0878820:CDS |
| CAGAAGGCTATTCAGGAACA+AGG | 0.557963 | 6_1:+20305114 | Msa0878820:CDS |
| AACAATGAGAAGTATCATGA+TGG | 0.567362 | 6_1:-20305891 | None:intergenic |
| GGAGGTGGTGACATTGAGTT+GGG | 0.570184 | 6_1:+20303365 | Msa0878820:CDS |
| GCTTGACAACATAGAATCAC+AGG | 0.577422 | 6_1:+20305491 | Msa0878820:CDS |
| GGAAAGGATCAGCTGTTGAT+CGG | 0.580005 | 6_1:+20304215 | Msa0878820:CDS |
| ACCAAAGCTCCTGCCATGAA+GGG | 0.585683 | 6_1:+20303820 | Msa0878820:CDS |
| ATTTGAAGCTGGTTAAGACC+TGG | 0.587356 | 6_1:-20301570 | None:intergenic |
| GGAAAATTGAAGAATGTGAG+AGG | 0.589464 | 6_1:-20301606 | None:intergenic |
| AATAGACAAAAGCCTGCTTG+TGG | 0.591505 | 6_1:+20304193 | Msa0878820:CDS |
| AACAATGAATGATCTTCTAA+CGG | 0.594528 | 6_1:+20301641 | Msa0878820:exon |
| TTGAGTTGGGAGAATATGGA+AGG | 0.601130 | 6_1:+20303378 | Msa0878820:CDS |
| CGGCGCAAGAGCTGATGAAG+AGG | 0.606104 | 6_1:+20304965 | Msa0878820:CDS |
| GCTATTCAGGAACAAGGACG+AGG | 0.633215 | 6_1:+20305120 | Msa0878820:CDS |
| AAGCAGTCAGAGATGTTGAG+AGG | 0.633421 | 6_1:+20305322 | Msa0878820:CDS |
| GAGATCCCTCGTGGTCGTGG+AGG | 0.639075 | 6_1:+20303347 | Msa0878820:CDS |
| GCAGTAGATCATGTGCAGCA+AGG | 0.646558 | 6_1:+20305806 | Msa0878820:CDS |
| CTTTATGCAGGATGCCCATG+AGG | 0.649549 | 6_1:+20303783 | Msa0878820:intron |
| GCAGTGTTAGTTGACGCACA+AGG | 0.666710 | 6_1:+20305462 | Msa0878820:CDS |
| TCACCACCTCCACGACCACG+AGG | 0.693877 | 6_1:-20303353 | None:intergenic |
| CATCCATGAAGAATATCGTG+AGG | 0.699809 | 6_1:+20304703 | Msa0878820:CDS |
| GAATCGTTTGAGATCCCTCG+TGG | 0.704785 | 6_1:+20303338 | Msa0878820:CDS |
| CACCACCTCCACGACCACGA+GGG | 0.725442 | 6_1:-20303352 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAAAAATAAAATAAAAAAAA+TGG | - | chr6_1:20301682-20301701 | None:intergenic | 0.0% |
| !! | ATCAAACAAAAATTAAATAA+TGG | + | chr6_1:20302692-20302711 | Msa0878820:intron | 10.0% |
| !! | AAATAATTTGATTAATTACT+AGG | - | chr6_1:20303512-20303531 | None:intergenic | 10.0% |
| !!! | AAATTATTTTGTATAATTTG+CGG | + | chr6_1:20303523-20303542 | Msa0878820:intron | 10.0% |
| !!! | AGTTTTGATTTTTTTTTTTG+TGG | + | chr6_1:20301725-20301744 | Msa0878820:intron | 15.0% |
| !!! | GTTTTGATTTTTTTTTTTGT+GGG | + | chr6_1:20301726-20301745 | Msa0878820:intron | 15.0% |
| !!! | TGATTTTCTCAAATAATTAT+CGG | + | chr6_1:20302178-20302197 | Msa0878820:intron | 15.0% |
| !!! | AACAAAAATTAAATAATGGA+TGG | + | chr6_1:20302696-20302715 | Msa0878820:intron | 15.0% |
| !!! | TTAATTTGATTTTCTTTTTC+AGG | + | chr6_1:20303316-20303335 | Msa0878820:intron | 15.0% |
| !! | TTAAATAATAGATAAAACGA+TGG | - | chr6_1:20304273-20304292 | None:intergenic | 15.0% |
| !! | ATAATATAACACAAAAAACA+AGG | - | chr6_1:20304531-20304550 | None:intergenic | 15.0% |
| !! | AAGATAAAAAAATAGAGTAA+TGG | + | chr6_1:20305553-20305572 | Msa0878820:intron | 15.0% |
| !!! | TTTTTTTTGTTATGCTTGTT+TGG | + | chr6_1:20301838-20301857 | Msa0878820:intron | 20.0% |
| !!! | TTAGTATTGATTTTTGTCTA+TGG | + | chr6_1:20302388-20302407 | Msa0878820:intron | 20.0% |
| !!! | AATTATAATAAGTATTGCCA+TGG | + | chr6_1:20302642-20302661 | Msa0878820:intron | 20.0% |
| !!! | GAACTTTTTAAATACCAAAA+AGG | - | chr6_1:20302806-20302825 | None:intergenic | 20.0% |
| !! | TTTGGTATTTAAAAAGTTCA+TGG | + | chr6_1:20302807-20302826 | Msa0878820:intron | 20.0% |
| !! | AGAATAGTCTATGAAAATAT+TGG | - | chr6_1:20303017-20303036 | None:intergenic | 20.0% |
| !!! | ATTCTAACAGTTTTAGATTT+TGG | + | chr6_1:20303087-20303106 | Msa0878820:intron | 20.0% |
| !!! | TTTTGATTTTTTAAGAGTAC+AGG | + | chr6_1:20303210-20303229 | Msa0878820:intron | 20.0% |
| !!! | TTTGATTTTTTAAGAGTACA+GGG | + | chr6_1:20303211-20303230 | Msa0878820:intron | 20.0% |
| !! | TACTCTTGTGAAATATTTAT+CGG | + | chr6_1:20303724-20303743 | Msa0878820:intron | 20.0% |
| !! | TGAAATAAATCAATCAAAAC+AGG | - | chr6_1:20303905-20303924 | None:intergenic | 20.0% |
| !! | TAGTTATAATGCTGAAATTT+GGG | - | chr6_1:20304466-20304485 | None:intergenic | 20.0% |
| !!! | AAGAAATTAAGTTGAAGATT+AGG | - | chr6_1:20304648-20304667 | None:intergenic | 20.0% |
| !!! | NAACAATTTTATGTTTTCTC+TGG | + | chr6_1:20304922-20304941 | Msa0878820:intron | 20.0% |
| !! | TAACAGTAGAATTAATTGAA+TGG | - | chr6_1:20305382-20305401 | None:intergenic | 20.0% |
| !!! | AAAAAAATAGAGTAATGGAA+AGG | + | chr6_1:20305558-20305577 | Msa0878820:intron | 20.0% |
| !!! | TCGATACTTTTCAATTTTTA+GGG | - | chr6_1:20305626-20305645 | None:intergenic | 20.0% |
| !!! | ATCGATACTTTTCAATTTTT+AGG | - | chr6_1:20305627-20305646 | None:intergenic | 20.0% |
| !!! | ACAATTGAAATTTTTGAAGA+TGG | - | chr6_1:20305713-20305732 | None:intergenic | 20.0% |
| !! | CTATTAATACTTAATTGTTG+TGG | - | chr6_1:20305995-20306014 | None:intergenic | 20.0% |
| !!! | AAAAAGAATGGATTATGAAT+AGG | - | chr6_1:20306019-20306038 | None:intergenic | 20.0% |
| !! | CTTAATAATCACAAAAAGAA+TGG | - | chr6_1:20306031-20306050 | None:intergenic | 20.0% |
| !! | AGTACATTAATCTCTTTAAA+AGG | - | chr6_1:20306071-20306090 | None:intergenic | 20.0% |
| ! | AACAATGAATGATCTTCTAA+CGG | + | chr6_1:20301641-20301660 | Msa0878820:exon | 25.0% |
| !! | GATCTAGGTTTTTGAATAAT+TGG | + | chr6_1:20301757-20301776 | Msa0878820:intron | 25.0% |
| !!! | TTTTTGTGTTTTGTGTTGTT+GGG | + | chr6_1:20301789-20301808 | Msa0878820:intron | 25.0% |
| !!! | ATTTGGTGAATTTGGTTTTT+TGG | + | chr6_1:20301882-20301901 | Msa0878820:intron | 25.0% |
| !!! | ATTTGGTTTTTTGGATTAAG+AGG | + | chr6_1:20301891-20301910 | Msa0878820:intron | 25.0% |
| !!! | TTTGGTTTTTTGGATTAAGA+GGG | + | chr6_1:20301892-20301911 | Msa0878820:intron | 25.0% |
| !! | TTGTAGTTGTATTTAGGTTA+TGG | + | chr6_1:20301951-20301970 | Msa0878820:intron | 25.0% |
| !! | ATTTAGGTTATGGATAATGT+TGG | + | chr6_1:20301961-20301980 | Msa0878820:intron | 25.0% |
| !!! | AGATGTTTTTGTTCTGAAAT+TGG | + | chr6_1:20302014-20302033 | Msa0878820:intron | 25.0% |
| ! | TGATTTATAGAAAAAGCTAG+AGG | + | chr6_1:20302611-20302630 | Msa0878820:intron | 25.0% |
| ! | GAAATTAAGAACTTCAAAGA+CGG | - | chr6_1:20302847-20302866 | None:intergenic | 25.0% |
| !! | CCATTTTCTCAAATTATTAC+CGG | + | chr6_1:20302923-20302942 | Msa0878820:intron | 25.0% |
| ! | CTATTGAACAATTAATCGAT+AGG | - | chr6_1:20303606-20303625 | None:intergenic | 25.0% |
| !! | CTATCGATTAATTGTTCAAT+AGG | + | chr6_1:20303604-20303623 | Msa0878820:intron | 25.0% |
| !! | AATATGTTTTCAGAAACTTC+TGG | - | chr6_1:20304345-20304364 | None:intergenic | 25.0% |
| ! | AGTTATAATGCTGAAATTTG+GGG | - | chr6_1:20304465-20304484 | None:intergenic | 25.0% |
| ! | GTAGTTATAATGCTGAAATT+TGG | - | chr6_1:20304467-20304486 | None:intergenic | 25.0% |
| ! | TTCAGCATTATAACTACTAT+TGG | + | chr6_1:20304470-20304489 | Msa0878820:intron | 25.0% |
| !!! | TATAACTACTATTGGCTTTT+AGG | + | chr6_1:20304478-20304497 | Msa0878820:intron | 25.0% |
| !!! | ATAACTACTATTGGCTTTTA+GGG | + | chr6_1:20304479-20304498 | Msa0878820:intron | 25.0% |
| ! | AATTAATCAATGGGAAAACT+TGG | - | chr6_1:20304787-20304806 | None:intergenic | 25.0% |
| ! | AAAGCAAAATCTACCTTATA+AGG | + | chr6_1:20305229-20305248 | Msa0878820:intron | 25.0% |
| !! | GAGTTATCTTTTGTAGATAA+TGG | + | chr6_1:20305269-20305288 | Msa0878820:intron | 25.0% |
| ! | AAGACATGAAAATAATCATC+AGG | - | chr6_1:20305422-20305441 | None:intergenic | 25.0% |
| !!! | TTTTTATCTTGATTCGATGA+TGG | - | chr6_1:20305543-20305562 | None:intergenic | 25.0% |
| ! | AATTTCAATTGTCTCTGATA+CGG | + | chr6_1:20305721-20305740 | Msa0878820:intron | 25.0% |
| ! | TGACTAATTTGATCAAATTC+AGG | + | chr6_1:20305775-20305794 | Msa0878820:intron | 25.0% |
| ! | TCATTCATTGTTGGTGAAAA+GGG | - | chr6_1:20301633-20301652 | None:intergenic | 30.0% |
| ! | ATCATTCATTGTTGGTGAAA+AGG | - | chr6_1:20301634-20301653 | None:intergenic | 30.0% |
| GTTAGAAGATCATTCATTGT+TGG | - | chr6_1:20301642-20301661 | None:intergenic | 30.0% | |
| ! | GTTTTTGTGTTTTGTGTTGT+TGG | + | chr6_1:20301788-20301807 | Msa0878820:intron | 30.0% |
| AAATTGAGGGTTGTTGAATT+TGG | + | chr6_1:20301865-20301884 | Msa0878820:intron | 30.0% | |
| ! | GTTGTTGAATTTGGTGAATT+TGG | + | chr6_1:20301874-20301893 | Msa0878820:intron | 30.0% |
| !!! | TAATGTTGGTGGATTTTTCA+TGG | + | chr6_1:20301975-20301994 | Msa0878820:intron | 30.0% |
| !!! | TTTTGTTCTGAAATTGGTGT+TGG | + | chr6_1:20302020-20302039 | Msa0878820:intron | 30.0% |
| !!! | TTGGTGTTGGTTTTTGTTTA+AGG | + | chr6_1:20302033-20302052 | Msa0878820:intron | 30.0% |
| TTCAGTGTAATTACATGTGT+CGG | - | chr6_1:20302153-20302172 | None:intergenic | 30.0% | |
| TCTCAAATAATTATCGGTGT+CGG | + | chr6_1:20302184-20302203 | Msa0878820:intron | 30.0% | |
| AAAAACTGAACTGAATCAGA+CGG | + | chr6_1:20302271-20302290 | Msa0878820:intron | 30.0% | |
| !! | TTGATTCGATTTTTGAACAC+TGG | + | chr6_1:20302573-20302592 | Msa0878820:intron | 30.0% |
| ! | TGATTCGATTTTTGAACACT+GGG | + | chr6_1:20302574-20302593 | Msa0878820:intron | 30.0% |
| ! | ATTTTTGAACACTGGGTTTT+GGG | + | chr6_1:20302581-20302600 | Msa0878820:intron | 30.0% |
| ! | GCATTTAACATGTTTTTCAC+TGG | + | chr6_1:20302720-20302739 | Msa0878820:intron | 30.0% |
| ! | AACATGTTTTTCACTGGATT+TGG | + | chr6_1:20302726-20302745 | Msa0878820:intron | 30.0% |
| ! | TTCTGAACTATGAACCTTTT+TGG | + | chr6_1:20302789-20302808 | Msa0878820:intron | 30.0% |
| TGCATTCAATACAAGCATAT+TGG | - | chr6_1:20302869-20302888 | None:intergenic | 30.0% | |
| CCGGTAATAATTTGAGAAAA+TGG | - | chr6_1:20302926-20302945 | None:intergenic | 30.0% | |
| TCTCAAATTATTACCGGTAT+TGG | + | chr6_1:20302929-20302948 | Msa0878820:intron | 30.0% | |
| ATTAAGGTCTATCTAGTGAT+AGG | - | chr6_1:20303118-20303137 | None:intergenic | 30.0% | |
| !!! | TGTCGTTTTAAGCACTATTA+AGG | - | chr6_1:20303134-20303153 | None:intergenic | 30.0% |
| ! | ATTTTACAGGCATCTAATGT+CGG | + | chr6_1:20303187-20303206 | Msa0878820:intron | 30.0% |
| AAGATGTCGATAGTTTAACT+AGG | + | chr6_1:20303249-20303268 | Msa0878820:intron | 30.0% | |
| CTTGGATAGTTTCTTCAAAA+AGG | + | chr6_1:20303418-20303437 | Msa0878820:CDS | 30.0% | |
| ATTGTGAAAGAAAAGTTACC+TGG | - | chr6_1:20303682-20303701 | None:intergenic | 30.0% | |
| ! | TTTTATGCAAACCTTTATGC+AGG | + | chr6_1:20303771-20303790 | Msa0878820:intron | 30.0% |
| TTATACTAACTAACCCTTCA+TGG | - | chr6_1:20303836-20303855 | None:intergenic | 30.0% | |
| ! | AAGTGTTATTGATACGAAGA+AGG | + | chr6_1:20303871-20303890 | Msa0878820:intron | 30.0% |
| ATTGATACGAAGAAGGATTT+AGG | + | chr6_1:20303878-20303897 | Msa0878820:intron | 30.0% | |
| !!! | GATCTCTACTGAAAGTTTTT+TGG | + | chr6_1:20304106-20304125 | Msa0878820:intron | 30.0% |
| AAACAAGGTAAAGATGAGTT+CGG | - | chr6_1:20304516-20304535 | None:intergenic | 30.0% | |
| AGTCGAGGTAATTAATCAAT+GGG | - | chr6_1:20304796-20304815 | None:intergenic | 30.0% | |
| AAGTCGAGGTAATTAATCAA+TGG | - | chr6_1:20304797-20304816 | None:intergenic | 30.0% | |
| ATTGATTAATTACCTCGACT+TGG | + | chr6_1:20304796-20304815 | Msa0878820:intron | 30.0% | |
| ! | TTTTCATGATTGTCAGTAAC+CGG | + | chr6_1:20304945-20304964 | Msa0878820:intron | 30.0% |
| ATTGACAGATTAATTGAGAC+CGG | + | chr6_1:20305072-20305091 | Msa0878820:CDS | 30.0% | |
| ATCGTTGAATGTCAAAATCA+GGG | - | chr6_1:20305179-20305198 | None:intergenic | 30.0% | |
| AATCGTTGAATGTCAAAATC+AGG | - | chr6_1:20305180-20305199 | None:intergenic | 30.0% | |
| TTTCAAATGTTCGAACTATC+TGG | + | chr6_1:20305661-20305680 | Msa0878820:intron | 30.0% | |
| ! | TCAACACTTTTCAGTTTTCA+AGG | - | chr6_1:20305688-20305707 | None:intergenic | 30.0% |
| TGCAAAGAAACTCAAGAAAA+TGG | + | chr6_1:20305858-20305877 | Msa0878820:CDS | 30.0% | |
| !! | AACAATGAGAAGTATCATGA+TGG | - | chr6_1:20305894-20305913 | None:intergenic | 30.0% |
| ! | AATTAACTATGCACCCTTTT+TGG | - | chr6_1:20305957-20305976 | None:intergenic | 30.0% |
| ! | AAAAAGGGTGCATAGTTAAT+TGG | + | chr6_1:20305956-20305975 | Msa0878820:exon | 30.0% |
| ! | AAAGAGAGAGAATTTGAAGC+TGG | - | chr6_1:20301584-20301603 | None:intergenic | 35.0% |
| GGAAAATTGAAGAATGTGAG+AGG | - | chr6_1:20301609-20301628 | None:intergenic | 35.0% | |
| ! | TTGTGGGTTTGTTTAGATCT+AGG | + | chr6_1:20301742-20301761 | Msa0878820:intron | 35.0% |
| CTTGTTTGGCAAGAAATTGA+GGG | + | chr6_1:20301852-20301871 | Msa0878820:intron | 35.0% | |
| ! | TTGGATTAAGAGGGAGATTT+TGG | + | chr6_1:20301901-20301920 | Msa0878820:intron | 35.0% |
| GCTGCATTGTAGTTGTATTT+AGG | + | chr6_1:20301945-20301964 | Msa0878820:intron | 35.0% | |
| TAGGTTATGGATAATGTTGG+TGG | + | chr6_1:20301964-20301983 | Msa0878820:intron | 35.0% | |
| !!! | TTGGTGGATTTTTCATGGTT+TGG | + | chr6_1:20301980-20301999 | Msa0878820:intron | 35.0% |
| AACGAAATCGTATACAGTGT+CGG | - | chr6_1:20302324-20302343 | None:intergenic | 35.0% | |
| ! | TGTCTAGGGTTGTTTATTTG+AGG | + | chr6_1:20302487-20302506 | Msa0878820:intron | 35.0% |
| ! | GTCTAGGGTTGTTTATTTGA+GGG | + | chr6_1:20302488-20302507 | Msa0878820:intron | 35.0% |
| GGTTGTTTATTTGAGGGATT+CGG | + | chr6_1:20302494-20302513 | Msa0878820:intron | 35.0% | |
| AAAGCAGTTGAAACATGATC+CGG | + | chr6_1:20302546-20302565 | Msa0878820:intron | 35.0% | |
| CAAAAATCGAATCAAACCTC+CGG | - | chr6_1:20302568-20302587 | None:intergenic | 35.0% | |
| ! | GATTTTTGAACACTGGGTTT+TGG | + | chr6_1:20302580-20302599 | Msa0878820:intron | 35.0% |
| CCAAACATAGTTACTATCCA+TGG | - | chr6_1:20302662-20302681 | None:intergenic | 35.0% | |
| CCATGGATAGTAACTATGTT+TGG | + | chr6_1:20302659-20302678 | Msa0878820:intron | 35.0% | |
| ! | TCACTGGATTTGGTTATTAG+TGG | + | chr6_1:20302736-20302755 | Msa0878820:intron | 35.0% |
| !! | TGGTTATTAGTGGACAGTTT+TGG | + | chr6_1:20302746-20302765 | Msa0878820:intron | 35.0% |
| GGAAGTGATTACATAACTCA+AGG | - | chr6_1:20302905-20302924 | None:intergenic | 35.0% | |
| AAGAAGTCATGACATAGTCA+CGG | - | chr6_1:20302978-20302997 | None:intergenic | 35.0% | |
| !! | GTCCATGCTTTGAATTTTAC+AGG | + | chr6_1:20303174-20303193 | Msa0878820:intron | 35.0% |
| TGCCTGTAAAATTCAAAGCA+TGG | - | chr6_1:20303179-20303198 | None:intergenic | 35.0% | |
| !! | TTTGTCTAGCTCTTCAACTT+TGG | - | chr6_1:20304079-20304098 | None:intergenic | 35.0% |
| ACATTATGTGTCGCAGAATT+TGG | + | chr6_1:20304168-20304187 | Msa0878820:intron | 35.0% | |
| ATTCTTAGACCTCAACAAGT+AGG | - | chr6_1:20304391-20304410 | None:intergenic | 35.0% | |
| !!! | TTTTGTAAGGATGATGGGTT+AGG | + | chr6_1:20304439-20304458 | Msa0878820:intron | 35.0% |
| TGCCTTGAAAAAGAAACTGA+AGG | + | chr6_1:20304558-20304577 | Msa0878820:CDS | 35.0% | |
| !! | CTCCTTCAGTTTCTTTTTCA+AGG | - | chr6_1:20304563-20304582 | None:intergenic | 35.0% |
| AAAGAAACTGAAGGAGAAGA+TGG | + | chr6_1:20304567-20304586 | Msa0878820:CDS | 35.0% | |
| TGAAAGAAAATGCGTGCTTA+AGG | + | chr6_1:20305014-20305033 | Msa0878820:intron | 35.0% | |
| ! | AATTTTCCAGAAGGCTATTC+AGG | + | chr6_1:20305107-20305126 | Msa0878820:CDS | 35.0% |
| AGGGATGGAATGAAGAAATA+AGG | - | chr6_1:20305160-20305179 | None:intergenic | 35.0% | |
| TTGAATGTCAAAATCAGGGA+TGG | - | chr6_1:20305175-20305194 | None:intergenic | 35.0% | |
| GTGTGAGAGATAACCTTATA+AGG | - | chr6_1:20305245-20305264 | None:intergenic | 35.0% | |
| TCGTTCTTGAATTTCTGCAA+GGG | - | chr6_1:20305298-20305317 | None:intergenic | 35.0% | |
| GAAACTGCTTGATTTACAAC+AGG | + | chr6_1:20305344-20305363 | Msa0878820:CDS | 35.0% | |
| CATGTCTTTGCAGACATTTA+TGG | + | chr6_1:20305434-20305453 | Msa0878820:intron | 35.0% | |
| !! | CTTTTCAATTTTTAGGGACC+AGG | - | chr6_1:20305620-20305639 | None:intergenic | 35.0% |
| ! | TTTGCATCTTCTTTGCCTTT+TGG | - | chr6_1:20305844-20305863 | None:intergenic | 35.0% |
| !! | TTGTTTCTGTCATCAAACCA+TGG | + | chr6_1:20305927-20305946 | Msa0878820:CDS | 35.0% |
| ! | TGTTTCTGTCATCAAACCAT+GGG | + | chr6_1:20305928-20305947 | Msa0878820:CDS | 35.0% |
| ! | AAACCATGGGTTACCAAAAA+GGG | + | chr6_1:20305941-20305960 | Msa0878820:CDS | 35.0% |
| ! | ATTTGAAGCTGGTTAAGACC+TGG | - | chr6_1:20301573-20301592 | None:intergenic | 40.0% |
| ! | TTCATTGTTGGTGAAAAGGG+TGG | - | chr6_1:20301630-20301649 | None:intergenic | 40.0% |
| GCTTGTTTGGCAAGAAATTG+AGG | + | chr6_1:20301851-20301870 | Msa0878820:intron | 40.0% | |
| TCTGTGTTTCCTATGAAGCA+CGG | + | chr6_1:20302075-20302094 | Msa0878820:intron | 40.0% | |
| ! | GTAATTACATGTGTCGGTGT+CGG | - | chr6_1:20302147-20302166 | None:intergenic | 40.0% |
| !! | AAACGTATGAAGCACCGATA+CGG | - | chr6_1:20302234-20302253 | None:intergenic | 40.0% |
| ! | TTCATGGTTCAGCTTTGGTT+CGG | - | chr6_1:20302460-20302479 | None:intergenic | 40.0% |
| TAAACAACCCTAGACAGTGT+TGG | - | chr6_1:20302483-20302502 | None:intergenic | 40.0% | |
| ! | TTATTTGAGGGATTCGGTCA+CGG | + | chr6_1:20302500-20302519 | Msa0878820:intron | 40.0% |
| ! | TGCTTTAAACCGCTTGAATC+AGG | - | chr6_1:20302532-20302551 | None:intergenic | 40.0% |
| AGCAGAATACACTTGCACTA+AGG | + | chr6_1:20303047-20303066 | Msa0878820:intron | 40.0% | |
| ATAGTGCTTAAAACGACACG+TGG | + | chr6_1:20303136-20303155 | Msa0878820:intron | 40.0% | |
| !! | TTTTAAGAGTACAGGGTGTG+TGG | + | chr6_1:20303218-20303237 | Msa0878820:intron | 40.0% |
| !! | GACATTGAGTTGGGAGAATA+TGG | + | chr6_1:20303374-20303393 | Msa0878820:CDS | 40.0% |
| !! | TTGAGTTGGGAGAATATGGA+AGG | + | chr6_1:20303378-20303397 | Msa0878820:CDS | 40.0% |
| GGAGAATATGGAAGGAATTC+AGG | + | chr6_1:20303386-20303405 | Msa0878820:CDS | 40.0% | |
| !! | TAACCTTTTGAGAAAGCTCC+AGG | + | chr6_1:20303661-20303680 | Msa0878820:CDS | 40.0% |
| TTACCTGGAGCTTTCTCAAA+AGG | - | chr6_1:20303667-20303686 | None:intergenic | 40.0% | |
| TGCAGCTATAAAGCAGAGAA+TGG | + | chr6_1:20304008-20304027 | Msa0878820:intron | 40.0% | |
| AGTTGAAGAGCTAGACAAAG+AGG | + | chr6_1:20304080-20304099 | Msa0878820:CDS | 40.0% | |
| AATAGACAAAAGCCTGCTTG+TGG | + | chr6_1:20304193-20304212 | Msa0878820:CDS | 40.0% | |
| ATAGACAAAAGCCTGCTTGT+GGG | + | chr6_1:20304194-20304213 | Msa0878820:CDS | 40.0% | |
| ! | GATGTCATTCCTACTTGTTG+AGG | + | chr6_1:20304379-20304398 | Msa0878820:intron | 40.0% |
| ACCCATCATCCTTACAAAAC+CGG | - | chr6_1:20304438-20304457 | None:intergenic | 40.0% | |
| CTCACGATATTCTTCATGGA+TGG | - | chr6_1:20304705-20304724 | None:intergenic | 40.0% | |
| CATCCATGAAGAATATCGTG+AGG | + | chr6_1:20304703-20304722 | Msa0878820:CDS | 40.0% | |
| CAACCTCACGATATTCTTCA+TGG | - | chr6_1:20304709-20304728 | None:intergenic | 40.0% | |
| ! | GAAAATTTGTTCGCTGTCTC+CGG | - | chr6_1:20305094-20305113 | None:intergenic | 40.0% |
| ! | CAGCGAACAAATTTTCCAGA+AGG | + | chr6_1:20305098-20305117 | Msa0878820:CDS | 40.0% |
| GAAATAAGGAGAGATGAACC+TGG | - | chr6_1:20305146-20305165 | None:intergenic | 40.0% | |
| GTCGTTCTTGAATTTCTGCA+AGG | - | chr6_1:20305299-20305318 | None:intergenic | 40.0% | |
| GCTTGACAACATAGAATCAC+AGG | + | chr6_1:20305491-20305510 | Msa0878820:CDS | 40.0% | |
| !! | GCGTGTTTTTACTCAAACAC+AGG | - | chr6_1:20305590-20305609 | None:intergenic | 40.0% |
| !! | TCAATTTTTAGGGACCAGGT+AGG | - | chr6_1:20305616-20305635 | None:intergenic | 40.0% |
| AGGCAATAATTCCCTCCAAA+AGG | + | chr6_1:20305826-20305845 | Msa0878820:CDS | 40.0% | |
| ! | CATCTTCTTTGCCTTTTGGA+GGG | - | chr6_1:20305840-20305859 | None:intergenic | 40.0% |
| ! | CAAACCATGGGTTACCAAAA+AGG | + | chr6_1:20305940-20305959 | Msa0878820:CDS | 40.0% |
| GATTAGGCGTGTCCTAGTTT+CGG | + | chr6_1:20302108-20302127 | Msa0878820:intron | 45.0% | |
| !! | ATGAAGCACCGATACGGATA+CGG | - | chr6_1:20302228-20302247 | None:intergenic | 45.0% |
| ACTGAATCAGACGGTTCAAC+TGG | + | chr6_1:20302280-20302299 | Msa0878820:intron | 45.0% | |
| !! | TCGTATACAGTGTCGGTTCA+CGG | - | chr6_1:20302317-20302336 | None:intergenic | 45.0% |
| ! | GTTGGTTCATGGTTCAGCTT+TGG | - | chr6_1:20302465-20302484 | None:intergenic | 45.0% |
| ACCATGAACCAACACTGTCT+AGG | + | chr6_1:20302472-20302491 | Msa0878820:intron | 45.0% | |
| CCATGAACCAACACTGTCTA+GGG | + | chr6_1:20302473-20302492 | Msa0878820:intron | 45.0% | |
| !! | CGGTTTTGTCCTGATTCAAG+CGG | + | chr6_1:20302520-20302539 | Msa0878820:intron | 45.0% |
| ACTAACTAACCCTTCATGGC+AGG | - | chr6_1:20303832-20303851 | None:intergenic | 45.0% | |
| GGAAAGGATCAGCTGTTGAT+CGG | + | chr6_1:20304215-20304234 | Msa0878820:CDS | 45.0% | |
| TAAGTCCTCACCTTACAAGC+CGG | + | chr6_1:20304416-20304435 | Msa0878820:intron | 45.0% | |
| !! | CCTTACAAAACCGGCTTGTA+AGG | - | chr6_1:20304429-20304448 | None:intergenic | 45.0% |
| !! | CCTTACAAGCCGGTTTTGTA+AGG | + | chr6_1:20304426-20304445 | Msa0878820:intron | 45.0% |
| !! | AGCCGGTTTTGTAAGGATGA+TGG | + | chr6_1:20304433-20304452 | Msa0878820:intron | 45.0% |
| !! | GCCGGTTTTGTAAGGATGAT+GGG | + | chr6_1:20304434-20304453 | Msa0878820:intron | 45.0% |
| GGAGAAGATGGCTGAATTTC+AGG | + | chr6_1:20304579-20304598 | Msa0878820:CDS | 45.0% | |
| TTCATGGATGGCTTCTCTCA+GGG | - | chr6_1:20304693-20304712 | None:intergenic | 45.0% | |
| GTTGAGAGACGCGTATTTAC+AGG | + | chr6_1:20304728-20304747 | Msa0878820:CDS | 45.0% | |
| CTTGTTCCTGAATAGCCTTC+TGG | - | chr6_1:20305116-20305135 | None:intergenic | 45.0% | |
| CAGAAGGCTATTCAGGAACA+AGG | + | chr6_1:20305114-20305133 | Msa0878820:CDS | 45.0% | |
| AAGCAGTCAGAGATGTTGAG+AGG | + | chr6_1:20305322-20305341 | Msa0878820:CDS | 45.0% | |
| TAAAAACACGCAGACCTACC+TGG | + | chr6_1:20305599-20305618 | Msa0878820:intron | 45.0% | |
| ! | GCATCTTCTTTGCCTTTTGG+AGG | - | chr6_1:20305841-20305860 | None:intergenic | 45.0% |
| ACTAGGACACGCCTAATCTG+AGG | - | chr6_1:20302106-20302125 | None:intergenic | 50.0% | |
| CACGACACATGTCCGAAACT+AGG | - | chr6_1:20302123-20302142 | None:intergenic | 50.0% | |
| TCCGATGTCCGTATCCGTAT+CGG | + | chr6_1:20302217-20302236 | Msa0878820:intron | 50.0% | |
| ACCGATACGGATACGGACAT+CGG | - | chr6_1:20302221-20302240 | None:intergenic | 50.0% | |
| !! | CCCTAGACAGTGTTGGTTCA+TGG | - | chr6_1:20302476-20302495 | None:intergenic | 50.0% |
| GCAGTTGAAACATGATCCGG+AGG | + | chr6_1:20302549-20302568 | Msa0878820:intron | 50.0% | |
| ! | GAATCGTTTGAGATCCCTCG+TGG | + | chr6_1:20303338-20303357 | Msa0878820:CDS | 50.0% |
| TGGAGGTGGTGACATTGAGT+TGG | + | chr6_1:20303364-20303383 | Msa0878820:CDS | 50.0% | |
| GGAGGTGGTGACATTGAGTT+GGG | + | chr6_1:20303365-20303384 | Msa0878820:CDS | 50.0% | |
| GGAAGGAATTCAGGAGAGCT+TGG | + | chr6_1:20303395-20303414 | Msa0878820:CDS | 50.0% | |
| GAATTCAGGAGAGCTTGGCT+TGG | + | chr6_1:20303400-20303419 | Msa0878820:CDS | 50.0% | |
| CTCATGGGCATCCTGCATAA+AGG | - | chr6_1:20303785-20303804 | None:intergenic | 50.0% | |
| CTTTATGCAGGATGCCCATG+AGG | + | chr6_1:20303783-20303802 | Msa0878820:intron | 50.0% | |
| !! | CACAGCTTTGGACTCCTCAT+GGG | - | chr6_1:20303800-20303819 | None:intergenic | 50.0% |
| !! | TCACAGCTTTGGACTCCTCA+TGG | - | chr6_1:20303801-20303820 | None:intergenic | 50.0% |
| ! | AGGAGCTTTGGTCACAGCTT+TGG | - | chr6_1:20303812-20303831 | None:intergenic | 50.0% |
| ACCAAAGCTCCTGCCATGAA+GGG | + | chr6_1:20303820-20303839 | Msa0878820:CDS | 50.0% | |
| CAAAAGCCTGCTTGTGGGAA+AGG | + | chr6_1:20304199-20304218 | Msa0878820:CDS | 50.0% | |
| !! | CAAAACCGGCTTGTAAGGTG+AGG | - | chr6_1:20304424-20304443 | None:intergenic | 50.0% |
| CTTCATGGATGGCTTCTCTC+AGG | - | chr6_1:20304694-20304713 | None:intergenic | 50.0% | |
| GCTATTCAGGAACAAGGACG+AGG | + | chr6_1:20305120-20305139 | Msa0878820:CDS | 50.0% | |
| GCAGTGTTAGTTGACGCACA+AGG | + | chr6_1:20305462-20305481 | Msa0878820:CDS | 50.0% | |
| GCAGTAGATCATGTGCAGCA+AGG | + | chr6_1:20305806-20305825 | Msa0878820:CDS | 50.0% | |
| !! | GCACCCTTTTTGGTAACCCA+TGG | - | chr6_1:20305947-20305966 | None:intergenic | 50.0% |
| !! | GAGGAGTGTCCGTGCTTCAT+AGG | - | chr6_1:20302087-20302106 | None:intergenic | 55.0% |
| GCACGGACACTCCTCAGATT+AGG | + | chr6_1:20302092-20302111 | Msa0878820:intron | 55.0% | |
| !! | ACAGTGTCGGTTCACGGTTC+AGG | - | chr6_1:20302311-20302330 | None:intergenic | 55.0% |
| TGACGCTGACACGCCAATAC+CGG | - | chr6_1:20302945-20302964 | None:intergenic | 55.0% | |
| ! | TTTGAGATCCCTCGTGGTCG+TGG | + | chr6_1:20303344-20303363 | Msa0878820:CDS | 55.0% |
| GACCAAAGCTCCTGCCATGA+AGG | + | chr6_1:20303819-20303838 | Msa0878820:CDS | 55.0% | |
| ACCCTTCATGGCAGGAGCTT+TGG | - | chr6_1:20303824-20303843 | None:intergenic | 55.0% | |
| GCTGATCCTTTCCCACAAGC+AGG | - | chr6_1:20304208-20304227 | None:intergenic | 55.0% | |
| CTCTTCATCAGCTCTTGCGC+CGG | - | chr6_1:20304967-20304986 | None:intergenic | 55.0% | |
| CGGCGCAAGAGCTGATGAAG+AGG | + | chr6_1:20304965-20304984 | Msa0878820:CDS | 60.0% | |
| TCAGGAACAAGGACGAGGCC+AGG | + | chr6_1:20305125-20305144 | Msa0878820:CDS | 60.0% | |
| GAGATCCCTCGTGGTCGTGG+AGG | + | chr6_1:20303347-20303366 | Msa0878820:CDS | 65.0% | |
| ATCCCTCGTGGTCGTGGAGG+TGG | + | chr6_1:20303350-20303369 | Msa0878820:CDS | 65.0% | |
| CACCACCTCCACGACCACGA+GGG | - | chr6_1:20303355-20303374 | None:intergenic | 65.0% | |
| TCACCACCTCCACGACCACG+AGG | - | chr6_1:20303356-20303375 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_1 | gene | 20301570 | 20306116 | 20301570 | ID=Msa0878820;Name=Msa0878820 |
| chr6_1 | mRNA | 20301570 | 20306116 | 20301570 | ID=Msa0878820-mRNA-1;Parent=Msa0878820;Name=Msa0878820-mRNA-1;_AED=0.05;_eAED=0.05;_QI=75|1|1|1|1|1|13|146|305 |
| chr6_1 | exon | 20301570 | 20301662 | 20301570 | ID=Msa0878820-mRNA-1:exon:5442;Parent=Msa0878820-mRNA-1 |
| chr6_1 | exon | 20303338 | 20303439 | 20303338 | ID=Msa0878820-mRNA-1:exon:5443;Parent=Msa0878820-mRNA-1 |
| chr6_1 | exon | 20303626 | 20303682 | 20303626 | ID=Msa0878820-mRNA-1:exon:5444;Parent=Msa0878820-mRNA-1 |
| chr6_1 | exon | 20303793 | 20303841 | 20303793 | ID=Msa0878820-mRNA-1:exon:5445;Parent=Msa0878820-mRNA-1 |
| chr6_1 | exon | 20304013 | 20304101 | 20304013 | ID=Msa0878820-mRNA-1:exon:5446;Parent=Msa0878820-mRNA-1 |
| chr6_1 | exon | 20304184 | 20304257 | 20304184 | ID=Msa0878820-mRNA-1:exon:5447;Parent=Msa0878820-mRNA-1 |
| chr6_1 | exon | 20304558 | 20304600 | 20304558 | ID=Msa0878820-mRNA-1:exon:5448;Parent=Msa0878820-mRNA-1 |
| chr6_1 | exon | 20304689 | 20304749 | 20304689 | ID=Msa0878820-mRNA-1:exon:5449;Parent=Msa0878820-mRNA-1 |
| chr6_1 | exon | 20304961 | 20304986 | 20304961 | ID=Msa0878820-mRNA-1:exon:5450;Parent=Msa0878820-mRNA-1 |
| chr6_1 | exon | 20305069 | 20305146 | 20305069 | ID=Msa0878820-mRNA-1:exon:5451;Parent=Msa0878820-mRNA-1 |
| chr6_1 | exon | 20305285 | 20305365 | 20305285 | ID=Msa0878820-mRNA-1:exon:5452;Parent=Msa0878820-mRNA-1 |
| chr6_1 | exon | 20305447 | 20305512 | 20305447 | ID=Msa0878820-mRNA-1:exon:5453;Parent=Msa0878820-mRNA-1 |
| chr6_1 | exon | 20305797 | 20306116 | 20305797 | ID=Msa0878820-mRNA-1:exon:5454;Parent=Msa0878820-mRNA-1 |
| chr6_1 | five_prime_UTR | 20301570 | 20301644 | 20301570 | ID=Msa0878820-mRNA-1:five_prime_utr;Parent=Msa0878820-mRNA-1 |
| chr6_1 | CDS | 20301645 | 20301662 | 20301645 | ID=Msa0878820-mRNA-1:cds;Parent=Msa0878820-mRNA-1 |
| chr6_1 | CDS | 20303338 | 20303439 | 20303338 | ID=Msa0878820-mRNA-1:cds;Parent=Msa0878820-mRNA-1 |
| chr6_1 | CDS | 20303626 | 20303682 | 20303626 | ID=Msa0878820-mRNA-1:cds;Parent=Msa0878820-mRNA-1 |
| chr6_1 | CDS | 20303793 | 20303841 | 20303793 | ID=Msa0878820-mRNA-1:cds;Parent=Msa0878820-mRNA-1 |
| chr6_1 | CDS | 20304013 | 20304101 | 20304013 | ID=Msa0878820-mRNA-1:cds;Parent=Msa0878820-mRNA-1 |
| chr6_1 | CDS | 20304184 | 20304257 | 20304184 | ID=Msa0878820-mRNA-1:cds;Parent=Msa0878820-mRNA-1 |
| chr6_1 | CDS | 20304558 | 20304600 | 20304558 | ID=Msa0878820-mRNA-1:cds;Parent=Msa0878820-mRNA-1 |
| chr6_1 | CDS | 20304689 | 20304749 | 20304689 | ID=Msa0878820-mRNA-1:cds;Parent=Msa0878820-mRNA-1 |
| chr6_1 | CDS | 20304961 | 20304986 | 20304961 | ID=Msa0878820-mRNA-1:cds;Parent=Msa0878820-mRNA-1 |
| chr6_1 | CDS | 20305069 | 20305146 | 20305069 | ID=Msa0878820-mRNA-1:cds;Parent=Msa0878820-mRNA-1 |
| chr6_1 | CDS | 20305285 | 20305365 | 20305285 | ID=Msa0878820-mRNA-1:cds;Parent=Msa0878820-mRNA-1 |
| chr6_1 | CDS | 20305447 | 20305512 | 20305447 | ID=Msa0878820-mRNA-1:cds;Parent=Msa0878820-mRNA-1 |
| chr6_1 | CDS | 20305797 | 20305970 | 20305797 | ID=Msa0878820-mRNA-1:cds;Parent=Msa0878820-mRNA-1 |
| chr6_1 | three_prime_UTR | 20305971 | 20306116 | 20305971 | ID=Msa0878820-mRNA-1:three_prime_utr;Parent=Msa0878820-mRNA-1 |
| Gene Sequence |
| Protein sequence |
