Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0625780 | XP_003604238.1 | 98.810 | 336 | 4 | 0 | 1 | 336 | 1 | 336 | 0.0 | 689 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0625780 | sp|A0A059TC02|CCR1_PETHY | 75.460 | 326 | 78 | 1 | 9 | 334 | 3 | 326 | 0.0 | 521 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0013270 | Msa0625780 | 0.817242 | 3.649862e-52 | -8.615850e-47 |
| Msa0037180 | Msa0625780 | 0.811609 | 6.427043e-51 | -8.615850e-47 |
| Msa0045810 | Msa0625780 | 0.809476 | 1.857061e-50 | -8.615850e-47 |
| Msa0062190 | Msa0625780 | 0.820204 | 7.762802e-53 | -8.615850e-47 |
| Msa0072180 | Msa0625780 | 0.815106 | 1.095890e-51 | -8.615850e-47 |
| Msa0081120 | Msa0625780 | -0.801703 | 7.944012e-49 | -8.615850e-47 |
| Msa0092220 | Msa0625780 | 0.813844 | 2.083109e-51 | -8.615850e-47 |
| Msa0106540 | Msa0625780 | 0.810005 | 1.428827e-50 | -8.615850e-47 |
| Msa0610700 | Msa0625780 | -0.828229 | 1.009803e-54 | -8.615850e-47 |
| Msa0625780 | Msa0663480 | 0.965143 | 3.179956e-124 | -8.615850e-47 |
| Msa0625780 | Msa0685060 | 0.828818 | 7.275125e-55 | -8.615850e-47 |
| Msa0625780 | Msa0772490 | 0.807451 | 5.022075e-50 | -8.615850e-47 |
| Msa0625780 | Msa0818720 | 0.811988 | 5.316076e-51 | -8.615850e-47 |
| Msa0625780 | Msa0818760 | 0.815178 | 1.056035e-51 | -8.615850e-47 |
| Msa0625780 | Msa0827870 | 0.815315 | 9.843943e-52 | -8.615850e-47 |
| Msa0625780 | Msa0833200 | -0.800807 | 1.212182e-48 | -8.615850e-47 |
| Msa0625780 | Msa0838620 | -0.809468 | 1.864452e-50 | -8.615850e-47 |
| Msa0625780 | Msa0853590 | 0.827000 | 1.991983e-54 | -8.615850e-47 |
| Msa0625780 | Msa0878820 | 0.804395 | 2.205666e-49 | -8.615850e-47 |
| Msa0625780 | Msa0945030 | 0.823043 | 1.712763e-53 | -8.615850e-47 |
| Msa0625780 | Msa0965950 | 0.802896 | 4.513846e-49 | -8.615850e-47 |
| Msa0625780 | Msa0998660 | -0.804294 | 2.314673e-49 | -8.615850e-47 |
| Msa0625780 | Msa1029830 | 0.807361 | 5.247885e-50 | -8.615850e-47 |
| Msa0625780 | Msa1068720 | 0.808212 | 3.460989e-50 | -8.615850e-47 |
| Msa0625780 | Msa1068950 | 0.823992 | 1.027392e-53 | -8.615850e-47 |
| Msa0625780 | Msa1129200 | -0.808917 | 2.446278e-50 | -8.615850e-47 |
| Msa0625780 | Msa1155610 | 0.806962 | 6.376514e-50 | -8.615850e-47 |
| Msa0625780 | Msa1156720 | 0.850329 | 1.821817e-60 | -8.615850e-47 |
| Msa0625780 | Msa1160530 | 0.817392 | 3.376432e-52 | -8.615850e-47 |
| Msa0625780 | Msa1170890 | 0.809096 | 2.240025e-50 | -8.615850e-47 |
| Msa0625780 | Msa1203650 | 0.805678 | 1.188622e-49 | -8.615850e-47 |
| Msa0625780 | Msa1205270 | -0.817481 | 3.225645e-52 | -8.615850e-47 |
| Msa0625780 | Msa1221270 | 0.814292 | 1.659547e-51 | -8.615850e-47 |
| Msa0625780 | Msa1263110 | 0.800384 | 1.477965e-48 | -8.615850e-47 |
| Msa0625780 | Msa1323260 | -0.811067 | 8.424879e-51 | -8.615850e-47 |
| Msa0625780 | Msa1337350 | 0.804466 | 2.131600e-49 | -8.615850e-47 |
| Msa0625780 | Msa1342360 | -0.821679 | 3.551200e-53 | -8.615850e-47 |
| Msa0625780 | Msa1365820 | 0.816423 | 5.574101e-52 | -8.615850e-47 |
| Msa0625780 | Msa1368390 | 0.821863 | 3.219337e-53 | -8.615850e-47 |
| Msa0625780 | Msa1405830 | 0.810179 | 1.311012e-50 | -8.615850e-47 |
| Msa0625780 | Msa1412330 | -0.801352 | 9.377088e-49 | -8.615850e-47 |
| Msa0177320 | Msa0625780 | 0.816528 | 5.278228e-52 | -8.615850e-47 |
| Msa0204950 | Msa0625780 | 0.832283 | 1.032675e-55 | -8.615850e-47 |
| Msa0216340 | Msa0625780 | 0.827636 | 1.402489e-54 | -8.615850e-47 |
| Msa0378350 | Msa0625780 | 0.807287 | 5.442570e-50 | -8.615850e-47 |
| Msa0382020 | Msa0625780 | -0.800270 | 1.559109e-48 | -8.615850e-47 |
| Msa0386880 | Msa0625780 | 0.813938 | 1.986872e-51 | -8.615850e-47 |
| Msa0389460 | Msa0625780 | 0.812826 | 3.487614e-51 | -8.615850e-47 |
| Msa0403740 | Msa0625780 | -0.822256 | 2.610741e-53 | -8.615850e-47 |
| Msa0431270 | Msa0625780 | -0.815785 | 7.736351e-52 | -8.615850e-47 |
| Msa0441600 | Msa0625780 | 0.803394 | 3.560409e-49 | -8.615850e-47 |
| Msa0456450 | Msa0625780 | -0.821873 | 3.202460e-53 | -8.615850e-47 |
| Msa0457070 | Msa0625780 | -0.814835 | 1.258061e-51 | -8.615850e-47 |
| Msa0467170 | Msa0625780 | 0.800570 | 1.354394e-48 | -8.615850e-47 |
| Msa0467330 | Msa0625780 | 0.813821 | 2.108476e-51 | -8.615850e-47 |
| Msa0256540 | Msa0625780 | 0.809398 | 1.930243e-50 | -8.615850e-47 |
| Msa0281470 | Msa0625780 | 0.813064 | 3.092923e-51 | -8.615850e-47 |
| Msa0320600 | Msa0625780 | 0.816877 | 4.408286e-52 | -8.615850e-47 |
| Msa0334320 | Msa0625780 | 0.841347 | 5.021674e-58 | -8.615850e-47 |
| Msa0364030 | Msa0625780 | -0.822896 | 1.853766e-53 | -8.615850e-47 |
| Msa0484210 | Msa0625780 | -0.802594 | 5.210354e-49 | -8.615850e-47 |
| Msa0529850 | Msa0625780 | 0.854494 | 1.185684e-61 | -8.615850e-47 |
| Msa0565700 | Msa0625780 | 0.818760 | 1.656974e-52 | -8.615850e-47 |
| Msa0567440 | Msa0625780 | 0.803682 | 3.102312e-49 | -8.615850e-47 |
| Msa0579070 | Msa0625780 | -0.838624 | 2.574247e-57 | -8.615850e-47 |
| Msa0581350 | Msa0625780 | 0.811750 | 5.989048e-51 | -8.615850e-47 |
| Msa0585330 | Msa0625780 | 0.963245 | 7.535491e-122 | -8.615850e-47 |
| Msa0585840 | Msa0625780 | 0.982443 | 4.177966e-155 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0625780 | MtrunA17_Chr4g0001321 | 98.810 | 336 | 4 | 0 | 1 | 336 | 1 | 336 | 0.0 | 689 |
| Msa0625780 | MtrunA17_Chr2g0333781 | 81.155 | 329 | 59 | 2 | 7 | 335 | 12 | 337 | 0.0 | 536 |
| Msa0625780 | MtrunA17_Chr3g0077221 | 51.242 | 322 | 148 | 6 | 9 | 323 | 2 | 321 | 2.18e-105 | 311 |
| Msa0625780 | MtrunA17_Chr3g0077231 | 50.159 | 315 | 148 | 6 | 16 | 323 | 5 | 317 | 5.34e-104 | 308 |
| Msa0625780 | MtrunA17_Chr4g0039311 | 48.125 | 320 | 157 | 6 | 11 | 323 | 5 | 322 | 9.67e-97 | 289 |
| Msa0625780 | MtrunA17_Chr5g0431311 | 46.519 | 316 | 162 | 3 | 15 | 324 | 3 | 317 | 1.92e-96 | 288 |
| Msa0625780 | MtrunA17_Chr8g0364051 | 47.531 | 324 | 160 | 6 | 10 | 326 | 1 | 321 | 1.19e-95 | 286 |
| Msa0625780 | MtrunA17_Chr4g0002661 | 46.296 | 324 | 162 | 4 | 11 | 326 | 4 | 323 | 2.29e-95 | 286 |
| Msa0625780 | MtrunA17_Chr4g0039321 | 47.500 | 320 | 159 | 7 | 11 | 323 | 3 | 320 | 6.94e-95 | 285 |
| Msa0625780 | MtrunA17_Chr8g0363831 | 47.352 | 321 | 159 | 6 | 10 | 323 | 2 | 319 | 3.67e-93 | 280 |
| Msa0625780 | MtrunA17_Chr4g0002961 | 46.914 | 324 | 160 | 4 | 11 | 326 | 4 | 323 | 9.93e-89 | 269 |
| Msa0625780 | MtrunA17_Chr3g0106111 | 42.089 | 316 | 176 | 3 | 15 | 324 | 3 | 317 | 1.29e-83 | 256 |
| Msa0625780 | MtrunA17_Chr5g0423551 | 41.456 | 316 | 177 | 5 | 18 | 326 | 5 | 319 | 3.17e-80 | 247 |
| Msa0625780 | MtrunA17_Chr1g0155411 | 41.411 | 326 | 173 | 11 | 15 | 327 | 6 | 326 | 1.47e-76 | 238 |
| Msa0625780 | MtrunA17_Chr2g0291541 | 41.176 | 323 | 177 | 6 | 14 | 326 | 7 | 326 | 2.82e-75 | 234 |
| Msa0625780 | MtrunA17_Chr2g0331211 | 39.506 | 324 | 185 | 5 | 17 | 332 | 5 | 325 | 8.01e-75 | 233 |
| Msa0625780 | MtrunA17_Chr1g0155431 | 41.159 | 328 | 171 | 12 | 15 | 327 | 6 | 326 | 1.86e-73 | 230 |
| Msa0625780 | MtrunA17_Chr4g0048961 | 35.385 | 325 | 189 | 9 | 18 | 324 | 15 | 336 | 4.16e-54 | 180 |
| Msa0625780 | MtrunA17_Chr7g0245741 | 33.333 | 327 | 201 | 9 | 13 | 326 | 4 | 326 | 4.32e-54 | 180 |
| Msa0625780 | MtrunA17_Chr7g0245671 | 33.837 | 331 | 197 | 12 | 13 | 326 | 4 | 329 | 1.26e-51 | 174 |
| Msa0625780 | MtrunA17_Chr7g0245641 | 34.242 | 330 | 197 | 11 | 13 | 326 | 41 | 366 | 3.93e-51 | 173 |
| Msa0625780 | MtrunA17_Chr4g0042101 | 34.328 | 335 | 190 | 10 | 18 | 327 | 25 | 354 | 1.28e-49 | 169 |
| Msa0625780 | MtrunA17_Chr7g0245731 | 33.028 | 327 | 202 | 10 | 13 | 326 | 54 | 376 | 1.37e-49 | 169 |
| Msa0625780 | MtrunA17_Chr7g0245691 | 32.335 | 334 | 199 | 12 | 13 | 326 | 4 | 330 | 5.51e-48 | 164 |
| Msa0625780 | MtrunA17_Chr4g0010991 | 33.846 | 325 | 197 | 10 | 17 | 326 | 8 | 329 | 1.91e-44 | 155 |
| Msa0625780 | MtrunA17_Chr7g0245631 | 32.622 | 328 | 202 | 12 | 13 | 326 | 4 | 326 | 3.53e-44 | 154 |
| Msa0625780 | MtrunA17_Chr6g0450211 | 34.333 | 300 | 178 | 8 | 13 | 299 | 51 | 344 | 3.22e-40 | 144 |
| Msa0625780 | MtrunA17_Chr7g0245711 | 30.000 | 290 | 186 | 10 | 50 | 326 | 3 | 288 | 5.69e-34 | 126 |
| Msa0625780 | MtrunA17_Chr5g0411071 | 30.449 | 312 | 192 | 10 | 2 | 306 | 3 | 296 | 9.71e-34 | 125 |
| Msa0625780 | MtrunA17_Chr2g0282001 | 27.219 | 338 | 217 | 10 | 17 | 328 | 7 | 341 | 1.86e-28 | 112 |
| Msa0625780 | MtrunA17_Chr7g0275521 | 27.059 | 340 | 212 | 13 | 17 | 326 | 7 | 340 | 2.22e-26 | 107 |
| Msa0625780 | MtrunA17_Chr2g0281991 | 27.874 | 348 | 202 | 13 | 17 | 328 | 8 | 342 | 2.90e-26 | 107 |
| Msa0625780 | MtrunA17_Chr2g0282011 | 26.393 | 341 | 208 | 11 | 17 | 324 | 8 | 338 | 2.02e-25 | 104 |
| Msa0625780 | MtrunA17_Chr3g0080551 | 41.284 | 109 | 61 | 3 | 107 | 212 | 17 | 125 | 1.08e-18 | 80.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0625780 | AT1G80820.1 | 73.968 | 315 | 82 | 0 | 15 | 329 | 6 | 320 | 3.08e-171 | 479 |
| Msa0625780 | AT1G15950.3 | 72.871 | 317 | 86 | 0 | 10 | 326 | 6 | 322 | 3.39e-167 | 469 |
| Msa0625780 | AT1G15950.1 | 72.871 | 317 | 86 | 0 | 10 | 326 | 6 | 322 | 3.39e-167 | 469 |
| Msa0625780 | AT1G15950.2 | 72.168 | 309 | 86 | 0 | 10 | 318 | 6 | 314 | 1.22e-159 | 450 |
| Msa0625780 | AT1G80820.2 | 73.308 | 266 | 71 | 0 | 15 | 280 | 6 | 271 | 4.14e-138 | 393 |
| Msa0625780 | AT1G15950.6 | 72.222 | 270 | 75 | 0 | 11 | 280 | 7 | 276 | 1.63e-136 | 389 |
| Msa0625780 | AT1G15950.4 | 71.533 | 274 | 78 | 0 | 11 | 284 | 7 | 280 | 1.90e-136 | 389 |
| Msa0625780 | AT1G15950.5 | 72.119 | 269 | 75 | 0 | 11 | 279 | 7 | 275 | 9.67e-136 | 387 |
| Msa0625780 | AT1G15950.7 | 75.893 | 224 | 54 | 0 | 103 | 326 | 1 | 224 | 7.38e-115 | 333 |
| Msa0625780 | AT5G19440.1 | 51.090 | 321 | 148 | 6 | 11 | 324 | 4 | 322 | 3.58e-105 | 311 |
| Msa0625780 | AT1G51410.1 | 48.457 | 324 | 156 | 7 | 11 | 326 | 3 | 323 | 3.35e-98 | 293 |
| Msa0625780 | AT5G58490.1 | 44.025 | 318 | 171 | 3 | 15 | 326 | 7 | 323 | 3.56e-87 | 265 |
| Msa0625780 | AT1G66800.1 | 47.385 | 325 | 150 | 8 | 10 | 323 | 1 | 315 | 1.08e-86 | 264 |
| Msa0625780 | AT1G09480.2 | 44.037 | 327 | 168 | 7 | 10 | 326 | 1 | 322 | 4.83e-86 | 262 |
| Msa0625780 | AT2G33590.1 | 47.436 | 312 | 154 | 5 | 17 | 322 | 9 | 316 | 1.26e-85 | 261 |
| Msa0625780 | AT1G09480.1 | 44.037 | 327 | 168 | 7 | 10 | 326 | 48 | 369 | 1.33e-85 | 263 |
| Msa0625780 | AT1G09510.1 | 45.031 | 322 | 166 | 7 | 10 | 323 | 1 | 319 | 3.26e-85 | 260 |
| Msa0625780 | AT1G09490.1 | 44.410 | 322 | 168 | 7 | 13 | 326 | 4 | 322 | 9.74e-85 | 259 |
| Msa0625780 | AT2G02400.1 | 41.509 | 318 | 177 | 4 | 15 | 326 | 4 | 318 | 9.50e-83 | 254 |
| Msa0625780 | AT1G09500.1 | 44.000 | 325 | 168 | 8 | 10 | 323 | 1 | 322 | 2.98e-81 | 250 |
| Msa0625780 | AT1G76470.1 | 43.614 | 321 | 171 | 3 | 15 | 327 | 5 | 323 | 4.19e-80 | 247 |
| Msa0625780 | AT4G35420.1 | 42.587 | 317 | 172 | 7 | 17 | 326 | 8 | 321 | 1.01e-79 | 246 |
| Msa0625780 | AT1G68540.1 | 40.379 | 317 | 179 | 5 | 19 | 326 | 6 | 321 | 7.25e-75 | 234 |
| Msa0625780 | AT1G09500.3 | 46.182 | 275 | 135 | 7 | 10 | 274 | 1 | 272 | 1.39e-74 | 231 |
| Msa0625780 | AT2G33600.1 | 45.513 | 312 | 160 | 5 | 17 | 322 | 9 | 316 | 1.24e-73 | 230 |
| Msa0625780 | AT1G25460.1 | 36.825 | 315 | 191 | 4 | 19 | 326 | 6 | 319 | 1.14e-66 | 213 |
| Msa0625780 | AT5G42800.1 | 39.264 | 326 | 182 | 10 | 15 | 328 | 6 | 327 | 7.31e-66 | 213 |
| Msa0625780 | AT1G09490.2 | 41.135 | 282 | 156 | 6 | 52 | 326 | 13 | 291 | 2.99e-64 | 205 |
| Msa0625780 | AT1G09500.2 | 41.667 | 288 | 154 | 8 | 47 | 323 | 4 | 288 | 2.45e-61 | 198 |
| Msa0625780 | AT2G45400.1 | 35.976 | 328 | 191 | 10 | 16 | 326 | 39 | 364 | 5.20e-53 | 179 |
| Msa0625780 | AT1G61720.1 | 34.084 | 311 | 185 | 9 | 13 | 306 | 9 | 316 | 6.98e-51 | 172 |
| Msa0625780 | AT2G45400.2 | 37.276 | 279 | 160 | 7 | 16 | 279 | 39 | 317 | 5.11e-49 | 167 |
| Msa0625780 | AT4G27250.1 | 35.647 | 317 | 171 | 12 | 18 | 306 | 14 | 325 | 1.35e-47 | 164 |
| Msa0625780 | AT4G27250.2 | 35.922 | 309 | 171 | 12 | 18 | 306 | 14 | 315 | 5.71e-47 | 162 |
| Msa0625780 | AT1G68540.2 | 37.441 | 211 | 130 | 2 | 117 | 326 | 5 | 214 | 3.35e-46 | 156 |
| Msa0625780 | AT2G23910.1 | 32.441 | 299 | 176 | 8 | 18 | 302 | 11 | 297 | 6.42e-44 | 153 |
| Msa0625780 | AT2G23910.2 | 32.971 | 276 | 160 | 7 | 18 | 280 | 11 | 274 | 7.42e-44 | 152 |
| Msa0625780 | AT2G23910.3 | 33.212 | 274 | 158 | 7 | 18 | 278 | 11 | 272 | 1.29e-43 | 151 |
| Msa0625780 | AT4G30470.1 | 30.952 | 294 | 186 | 6 | 18 | 302 | 11 | 296 | 1.24e-38 | 139 |
| Msa0625780 | AT2G45400.3 | 32.653 | 294 | 180 | 9 | 49 | 326 | 16 | 307 | 1.42e-35 | 131 |
| Msa0625780 | AT5G14700.1 | 33.213 | 277 | 161 | 8 | 12 | 270 | 50 | 320 | 1.74e-35 | 132 |
| Msa0625780 | AT2G23910.4 | 31.679 | 262 | 154 | 7 | 54 | 302 | 14 | 263 | 1.16e-34 | 128 |
| Msa0625780 | AT2G45400.4 | 37.037 | 216 | 122 | 6 | 16 | 217 | 39 | 254 | 5.41e-34 | 125 |
| Msa0625780 | AT5G14700.2 | 32.444 | 225 | 132 | 6 | 12 | 221 | 50 | 269 | 9.25e-27 | 107 |
| Msa0625780 | AT4G33360.2 | 28.279 | 244 | 152 | 8 | 17 | 253 | 15 | 242 | 1.11e-17 | 82.8 |
| Msa0625780 | AT4G33360.3 | 28.279 | 244 | 152 | 8 | 17 | 253 | 3 | 230 | 1.39e-17 | 82.8 |
| Msa0625780 | AT4G33360.1 | 28.279 | 244 | 152 | 8 | 17 | 253 | 15 | 242 | 1.81e-17 | 82.4 |
Find 88 sgRNAs with CRISPR-Local
Find 178 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACAACATCTCTACTCGTATT+TGG | 0.148678 | 4_3:-5085844 | None:intergenic |
| TAAGAAGAAATAAATTAATT+TGG | 0.207846 | 4_3:-5085051 | None:intergenic |
| CTGGCGGGTTCATAGCTTCT+TGG | 0.234598 | 4_3:+5085149 | Msa0625780:CDS |
| CACATCCTCAAGTACCTTAA+TGG | 0.244324 | 4_3:+5086190 | Msa0625780:CDS |
| GTGAACCCAGTTGTGGTTCT+TGG | 0.275623 | 4_3:+5086130 | Msa0625780:CDS |
| TCTTTCAAGTGATCATTCTT+TGG | 0.278143 | 4_3:-5085468 | None:intergenic |
| TGGTGAGGTTGTTGAAATTT+TGG | 0.282212 | 4_3:+5086345 | Msa0625780:CDS |
| AAAAGAAAATCAAGTTGATT+TGG | 0.293241 | 4_3:+5086102 | Msa0625780:CDS |
| ATCGATTGGAACGGTCTATA+TGG | 0.308610 | 4_3:+5085819 | Msa0625780:CDS |
| GAATGATCACTTGAAAGAAT+TGG | 0.322640 | 4_3:+5085473 | Msa0625780:CDS |
| TTGGCTTGTCAAACTTCTCT+TGG | 0.330178 | 4_3:+5085168 | Msa0625780:CDS |
| AATATGTATGGTTTCACTCT+TGG | 0.331350 | 4_3:-5087574 | None:intergenic |
| TCTATCCAATCTGTTGTTCA+TGG | 0.337063 | 4_3:+5085549 | Msa0625780:CDS |
| CTATAATATAGTACTCTTGT+AGG | 0.339137 | 4_3:+5087741 | Msa0625780:three_prime_UTR |
| TATGAGACAAATTCTGCTTC+TGG | 0.341001 | 4_3:+5086289 | Msa0625780:CDS |
| ATAATGTGATAACTCAAATA+TGG | 0.343716 | 4_3:-5084961 | None:intergenic |
| TTCTTTGTTCCATTCACTGC+TGG | 0.346517 | 4_3:-5085745 | None:intergenic |
| AATGTTTATATGAAACTGTT+AGG | 0.352716 | 4_3:+5087647 | Msa0625780:CDS |
| TGTTGCATTCACATAAGTTT+TGG | 0.352789 | 4_3:-5086218 | None:intergenic |
| GAAAGAGGTTACACTGTTAG+AGG | 0.360156 | 4_3:+5085190 | Msa0625780:CDS |
| AAATTTGCATACCTGGGTTT+CGG | 0.363831 | 4_3:-5085219 | None:intergenic |
| TCAAAGACTTGGTGGACATT+AGG | 0.371496 | 4_3:+5084856 | Msa0625780:five_prime_UTR |
| GTGCAGAACTGGTATTGTTA+TGG | 0.378304 | 4_3:+5086043 | Msa0625780:intron |
| CAACATCTCTACTCGTATTT+GGG | 0.380185 | 4_3:-5085843 | None:intergenic |
| TCTTCTTGCATGGGAGGAAT+AGG | 0.388850 | 4_3:-5087694 | None:intergenic |
| ACAATCTTATGTTCATGTTA+AGG | 0.400887 | 4_3:+5086240 | Msa0625780:CDS |
| TTATTCTTTGCTATCTCCAT+TGG | 0.403938 | 4_3:+5084980 | Msa0625780:five_prime_UTR |
| ATCGTGTGTGTCACCGGTGC+TGG | 0.407046 | 4_3:+5085130 | Msa0625780:CDS |
| CACCGGTGACACACACGATT+TGG | 0.409017 | 4_3:-5085126 | None:intergenic |
| AAGTGACACACTAAGCAATA+TGG | 0.414623 | 4_3:-5084917 | None:intergenic |
| TGCAGAACTGGTATTGTTAT+GGG | 0.425363 | 4_3:+5086044 | Msa0625780:intron |
| TTAATTGTTGGTTGAAGTAA+TGG | 0.425863 | 4_3:-5086154 | None:intergenic |
| TCATATAAACATTGCTTCAC+AGG | 0.433601 | 4_3:-5087637 | None:intergenic |
| AATGGTCCAAGAACCACAAC+TGG | 0.433883 | 4_3:-5086136 | None:intergenic |
| TATAATATAGTACTCTTGTA+GGG | 0.442040 | 4_3:+5087742 | Msa0625780:three_prime_UTR |
| GGAAGATAGATGCTTCTTGT+TGG | 0.442890 | 4_3:-5084940 | None:intergenic |
| TTGTAGTTGATGAATCATAT+TGG | 0.460618 | 4_3:+5085863 | Msa0625780:CDS |
| ATTGTACTAGCATTAATTGT+TGG | 0.463159 | 4_3:-5086166 | None:intergenic |
| GTCAAACTTCTCTTGGAAAG+AGG | 0.467940 | 4_3:+5085175 | Msa0625780:CDS |
| AAAATAACTCACAGGGTTGT+CGG | 0.470932 | 4_3:-5085607 | None:intergenic |
| AGAGAGGCTAACTTTGCATA+AGG | 0.471199 | 4_3:+5085506 | Msa0625780:CDS |
| AAATCAAAAGCTGAAAGACT+TGG | 0.471600 | 4_3:+5087600 | Msa0625780:CDS |
| GATAACACTTCATCAGTCTC+TGG | 0.493312 | 4_3:+5085097 | Msa0625780:CDS |
| GACTGATGAAGTGTTATCAT+AGG | 0.499014 | 4_3:-5085092 | None:intergenic |
| CATATAATAGGATGAGATGT+TGG | 0.502572 | 4_3:+5085720 | Msa0625780:intron |
| AACACTTACTTGGTAGGAAG+TGG | 0.504048 | 4_3:-5086388 | None:intergenic |
| TTATGTTCATGTTAAGGATG+TGG | 0.505241 | 4_3:+5086246 | Msa0625780:CDS |
| GTTGTGTTCACTTCATCGAT+TGG | 0.505971 | 4_3:+5085805 | Msa0625780:CDS |
| AAAGCTGAAAGACTTGGGAT+TGG | 0.510048 | 4_3:+5087606 | Msa0625780:CDS |
| CTCACAGGGTTGTCGGTGAC+AGG | 0.510560 | 4_3:-5085600 | None:intergenic |
| GACCAAATCGTGTGTGTCAC+CGG | 0.524328 | 4_3:+5085124 | Msa0625780:CDS |
| AGCTATGAACCCGCCAGCAC+CGG | 0.525430 | 4_3:-5085143 | None:intergenic |
| GGCAACCATGAACAACAGAT+TGG | 0.526807 | 4_3:-5085554 | None:intergenic |
| TTAAGCAGAGTCTTCTTGCA+TGG | 0.532426 | 4_3:-5087704 | None:intergenic |
| ATGTTGGAGCCAGCAGTGAA+TGG | 0.533675 | 4_3:+5085736 | Msa0625780:CDS |
| TGTGTGTCACCGGTGCTGGC+GGG | 0.540247 | 4_3:+5085134 | Msa0625780:CDS |
| GATGAAGTGTTATCATAGGC+AGG | 0.541028 | 4_3:-5085088 | None:intergenic |
| GTGTGTGTCACCGGTGCTGG+CGG | 0.544302 | 4_3:+5085133 | Msa0625780:CDS |
| AATCAAAAGCTGAAAGACTT+GGG | 0.547219 | 4_3:+5087601 | Msa0625780:CDS |
| TTGGTAGGAAGTGGGTACTC+AGG | 0.551005 | 4_3:-5086379 | None:intergenic |
| TCTGTTGTTCATGGTTGCCA+TGG | 0.552494 | 4_3:+5085558 | Msa0625780:CDS |
| ATATGAAACACTTACTTGGT+AGG | 0.553678 | 4_3:-5086394 | None:intergenic |
| TAAGCAGAGTCTTCTTGCAT+GGG | 0.557099 | 4_3:-5087703 | None:intergenic |
| AGAGGAACCGTCCGAAACCC+AGG | 0.563011 | 4_3:+5085208 | Msa0625780:CDS |
| GTTAGGAGTCTACAAGAGAA+AGG | 0.565801 | 4_3:+5087664 | Msa0625780:CDS |
| GGTTGTTGTGAACCCAGTTG+TGG | 0.566597 | 4_3:+5086123 | Msa0625780:CDS |
| TGGGTACTCAGGAAAATACT+TGG | 0.568031 | 4_3:-5086368 | None:intergenic |
| GCAGAGTCTTCTTGCATGGG+AGG | 0.572180 | 4_3:-5087700 | None:intergenic |
| GATCACTTGAAAGAATTGGA+AGG | 0.576295 | 4_3:+5085477 | Msa0625780:CDS |
| CAGCACCATTAAGGTACTTG+AGG | 0.581125 | 4_3:-5086195 | None:intergenic |
| TTGCATACCTGGGTTTCGGA+CGG | 0.587038 | 4_3:-5085215 | None:intergenic |
| GTTCACTTCATCGATTGGAA+CGG | 0.592538 | 4_3:+5085810 | Msa0625780:CDS |
| AACTGCTTTGCATCGTGGTG+AGG | 0.603860 | 4_3:+5086330 | Msa0625780:CDS |
| ATAATATAGTACTCTTGTAG+GGG | 0.610642 | 4_3:+5087743 | Msa0625780:three_prime_UTR |
| CACTAGAAAAGAAAGACCAA+TGG | 0.621788 | 4_3:-5084996 | None:intergenic |
| ACACTAAGCAATATGGACAA+TGG | 0.626504 | 4_3:-5084910 | None:intergenic |
| CAGTGGCTGAACAATCAGCA+TGG | 0.627131 | 4_3:+5086071 | Msa0625780:CDS |
| AGTGGCTGAACAATCAGCAT+GGG | 0.640259 | 4_3:+5086072 | Msa0625780:CDS |
| AACACTTCATCAGTCTCTGG+TGG | 0.644313 | 4_3:+5085100 | Msa0625780:CDS |
| CTTGCATGGGAGGAATAGGA+AGG | 0.645331 | 4_3:-5087690 | None:intergenic |
| AATTGGAAGGAGCAAGAGAG+AGG | 0.645670 | 4_3:+5085490 | Msa0625780:CDS |
| ACACTTACTTGGTAGGAAGT+GGG | 0.647055 | 4_3:-5086387 | None:intergenic |
| AAGCTGTGTGGAACACACCA+TGG | 0.653770 | 4_3:-5085575 | None:intergenic |
| ATGGTCCAAGAACCACAACT+GGG | 0.677277 | 4_3:-5086135 | None:intergenic |
| TGTGAAACTGCTTTGCATCG+TGG | 0.688310 | 4_3:+5086325 | Msa0625780:CDS |
| AGAGCATTGCAAGAACACCA+AGG | 0.704040 | 4_3:+5085894 | Msa0625780:CDS |
| CGGTGACAGGAGAAGCTGTG+TGG | 0.708743 | 4_3:-5085587 | None:intergenic |
| GTATTGTTATGGGAAGACAG+TGG | 0.831616 | 4_3:+5086054 | Msa0625780:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAAGAAGAAATAAATTAATT+TGG | - | chr4_3:5085054-5085073 | None:intergenic | 10.0% |
| !! | GTTAAGTTAAATAAATAATT+TGG | + | chr4_3:5085348-5085367 | Msa0625780:intron | 10.0% |
| !!! | TTTTATTTGTATATAATTAG+AGG | + | chr4_3:5085443-5085462 | Msa0625780:intron | 10.0% |
| !!! | TTTTTAAGTTAATTATGTTA+TGG | + | chr4_3:5086430-5086449 | Msa0625780:intron | 10.0% |
| !! | CATTTAGTTAATTAATATAA+GGG | + | chr4_3:5087031-5087050 | Msa0625780:intron | 10.0% |
| !! | ATTAAGAAAAATTTATTGAT+TGG | + | chr4_3:5087094-5087113 | Msa0625780:intron | 10.0% |
| !!! | TTAAGAAAAATTTATTGATT+GGG | + | chr4_3:5087095-5087114 | Msa0625780:intron | 10.0% |
| !! | AATTATTTATGATATATTCT+TGG | - | chr4_3:5087188-5087207 | None:intergenic | 10.0% |
| !! | TTATATAAAAATCAAAGACT+TGG | + | chr4_3:5084845-5084864 | Msa0625780:five_prime_UTR | 15.0% |
| !! | ATTTGGTATAAGAAAAAAAA+TGG | - | chr4_3:5085037-5085056 | None:intergenic | 15.0% |
| !! | TGTGAAATTAAATTTACAAA+TGG | - | chr4_3:5085642-5085661 | None:intergenic | 15.0% |
| !! | TTTATAAAGAGTAACTTATA+AGG | + | chr4_3:5085676-5085695 | Msa0625780:intron | 15.0% |
| !! | ATTAAGATTAATTAATTAGG+TGG | + | chr4_3:5085998-5086017 | Msa0625780:intron | 15.0% |
| !! | TGACTTAATTATAAATTCTA+AGG | - | chr4_3:5086862-5086881 | None:intergenic | 15.0% |
| !! | TATTAATTAACTAAATGCTT+AGG | - | chr4_3:5087028-5087047 | None:intergenic | 15.0% |
| !! | GCATTTAGTTAATTAATATA+AGG | + | chr4_3:5087030-5087049 | Msa0625780:intron | 15.0% |
| !!! | AGTATATTAGAACTTTTAAT+TGG | - | chr4_3:5087070-5087089 | None:intergenic | 15.0% |
| !!! | ATATATCATAAATAATTTGC+TGG | + | chr4_3:5087191-5087210 | Msa0625780:intron | 15.0% |
| !!! | CTTATTTAATCTTTTATTAC+TGG | - | chr4_3:5087264-5087283 | None:intergenic | 15.0% |
| !! | CATAATTTAACAAATACTTT+GGG | + | chr4_3:5087465-5087484 | Msa0625780:intron | 15.0% |
| !!! | AATTGTTTTTTACTCGTTTT+TGG | - | chr4_3:5084827-5084846 | None:intergenic | 20.0% |
| !! | ATAATGTGATAACTCAAATA+TGG | - | chr4_3:5084964-5084983 | None:intergenic | 20.0% |
| !! | AAATAATTGCTATGTTTATG+TGG | + | chr4_3:5085286-5085305 | Msa0625780:intron | 20.0% |
| !!! | AAGGTGAATTAATCATTTTA+TGG | + | chr4_3:5085695-5085714 | Msa0625780:intron | 20.0% |
| !!! | CATTTTATGGAACATATAAT+AGG | + | chr4_3:5085708-5085727 | Msa0625780:intron | 20.0% |
| !!! | AAAAGAAAATCAAGTTGATT+TGG | + | chr4_3:5086102-5086121 | Msa0625780:CDS | 20.0% |
| !!! | ACTTTTGATCTCAAAATTTT+GGG | - | chr4_3:5086625-5086644 | None:intergenic | 20.0% |
| !!! | AAGTCTTAAATTAAGTTGTT+TGG | + | chr4_3:5086641-5086660 | Msa0625780:intron | 20.0% |
| !!! | TTGAGTTTTTTTGTTTGTTA+GGG | - | chr4_3:5086763-5086782 | None:intergenic | 20.0% |
| !!! | ATTGAGTTTTTTTGTTTGTT+AGG | - | chr4_3:5086764-5086783 | None:intergenic | 20.0% |
| !!! | AATTATAAATTCTAAGGAGT+AGG | - | chr4_3:5086856-5086875 | None:intergenic | 20.0% |
| !!! | TATTAGAACTTTTAATTGGA+TGG | - | chr4_3:5087066-5087085 | None:intergenic | 20.0% |
| !! | TAGATGAACATATCATATAT+TGG | + | chr4_3:5087150-5087169 | Msa0625780:intron | 20.0% |
| !! | AGATGAACATATCATATATT+GGG | + | chr4_3:5087151-5087170 | Msa0625780:intron | 20.0% |
| !! | GCATAATTTAACAAATACTT+TGG | + | chr4_3:5087464-5087483 | Msa0625780:intron | 20.0% |
| !!! | TTTTGATTTGAGAATATGTA+TGG | - | chr4_3:5087589-5087608 | None:intergenic | 20.0% |
| !! | AATGTTTATATGAAACTGTT+AGG | + | chr4_3:5087647-5087666 | Msa0625780:CDS | 20.0% |
| !! | TATAATATAGTACTCTTGTA+GGG | + | chr4_3:5087742-5087761 | Msa0625780:three_prime_UTR | 20.0% |
| ! | TATAAAAATCAAAGACTTGG+TGG | + | chr4_3:5084848-5084867 | Msa0625780:five_prime_UTR | 25.0% |
| !! | ACGTTTTCTCAATCTATAAA+AGG | + | chr4_3:5084884-5084903 | Msa0625780:five_prime_UTR | 25.0% |
| ! | TGGTATAAGAAAAAAAATGG+TGG | - | chr4_3:5085034-5085053 | None:intergenic | 25.0% |
| ! | AACATAGAAAATAACTCACA+GGG | - | chr4_3:5085617-5085636 | None:intergenic | 25.0% |
| ! | AAACATAGAAAATAACTCAC+AGG | - | chr4_3:5085618-5085637 | None:intergenic | 25.0% |
| !!! | TTGTAGTTGATGAATCATAT+TGG | + | chr4_3:5085863-5085882 | Msa0625780:CDS | 25.0% |
| !!! | AATTTTTTTTTGTGCAGAAC+TGG | + | chr4_3:5086032-5086051 | Msa0625780:intron | 25.0% |
| !! | TTAATTGTTGGTTGAAGTAA+TGG | - | chr4_3:5086157-5086176 | None:intergenic | 25.0% |
| ! | ATTGTACTAGCATTAATTGT+TGG | - | chr4_3:5086169-5086188 | None:intergenic | 25.0% |
| ! | ACAATCTTATGTTCATGTTA+AGG | + | chr4_3:5086240-5086259 | Msa0625780:CDS | 25.0% |
| ! | CTTATGACTTATCTAGATTA+GGG | + | chr4_3:5086470-5086489 | Msa0625780:intron | 25.0% |
| !! | CTTTTGATCTCAAAATTTTG+GGG | - | chr4_3:5086624-5086643 | None:intergenic | 25.0% |
| !! | GACTTTTGATCTCAAAATTT+TGG | - | chr4_3:5086626-5086645 | None:intergenic | 25.0% |
| ! | TAGATGTACACATTGAATAA+GGG | - | chr4_3:5086667-5086686 | None:intergenic | 25.0% |
| ! | TTAGATGTACACATTGAATA+AGG | - | chr4_3:5086668-5086687 | None:intergenic | 25.0% |
| ! | ATTACATTAAGAGTCAAAGT+TGG | - | chr4_3:5086829-5086848 | None:intergenic | 25.0% |
| !! | ACTTAAGTCAATGATTTTAC+AGG | + | chr4_3:5086902-5086921 | Msa0625780:intron | 25.0% |
| ! | ATGATATATTCTTGGTTAGT+AGG | - | chr4_3:5087180-5087199 | None:intergenic | 25.0% |
| ! | TTTAAAGAAACATGCACTTA+AGG | - | chr4_3:5087219-5087238 | None:intergenic | 25.0% |
| ! | ATTCATCATAGCAATAGAAA+CGG | - | chr4_3:5087379-5087398 | None:intergenic | 25.0% |
| ! | TTCTATTGCTATGATGAATT+AGG | + | chr4_3:5087380-5087399 | Msa0625780:intron | 25.0% |
| ! | TCTATTGCTATGATGAATTA+GGG | + | chr4_3:5087381-5087400 | Msa0625780:intron | 25.0% |
| !!! | GCTAAAATTTTGAAAGTGAA+AGG | - | chr4_3:5087508-5087527 | None:intergenic | 25.0% |
| ! | CTATAATATAGTACTCTTGT+AGG | + | chr4_3:5087741-5087760 | Msa0625780:three_prime_UTR | 25.0% |
| ! | ATAATATAGTACTCTTGTAG+GGG | + | chr4_3:5087743-5087762 | Msa0625780:three_prime_UTR | 25.0% |
| ! | TTATTCTTTGCTATCTCCAT+TGG | + | chr4_3:5084980-5084999 | Msa0625780:five_prime_UTR | 30.0% |
| ! | TCTTTCAAGTGATCATTCTT+TGG | - | chr4_3:5085471-5085490 | None:intergenic | 30.0% |
| GAATGATCACTTGAAAGAAT+TGG | + | chr4_3:5085473-5085492 | Msa0625780:CDS | 30.0% | |
| CATATAATAGGATGAGATGT+TGG | + | chr4_3:5085720-5085739 | Msa0625780:intron | 30.0% | |
| GTAGTGAATTAATCAAACCT+TGG | - | chr4_3:5085914-5085933 | None:intergenic | 30.0% | |
| ! | TGTTGCATTCACATAAGTTT+TGG | - | chr4_3:5086221-5086240 | None:intergenic | 30.0% |
| TTATGTTCATGTTAAGGATG+TGG | + | chr4_3:5086246-5086265 | Msa0625780:CDS | 30.0% | |
| ATATGAAACACTTACTTGGT+AGG | - | chr4_3:5086397-5086416 | None:intergenic | 30.0% | |
| GACTATATGAAACACTTACT+TGG | - | chr4_3:5086401-5086420 | None:intergenic | 30.0% | |
| GCTTATGACTTATCTAGATT+AGG | + | chr4_3:5086469-5086488 | Msa0625780:intron | 30.0% | |
| GAAAAAAACTTAGTTGAGAG+AGG | - | chr4_3:5086515-5086534 | None:intergenic | 30.0% | |
| TGTACATCTAACTTGATCTT+GGG | + | chr4_3:5086677-5086696 | Msa0625780:intron | 30.0% | |
| !! | TGACTTGTTCATTCTAAACA+GGG | - | chr4_3:5086723-5086742 | None:intergenic | 30.0% |
| !! | TTGACTTGTTCATTCTAAAC+AGG | - | chr4_3:5086724-5086743 | None:intergenic | 30.0% |
| ! | ATTTTACAGGTAAAAACGAG+TGG | + | chr4_3:5086915-5086934 | Msa0625780:intron | 30.0% |
| ATGACTTCTCCTAAAAATAG+TGG | - | chr4_3:5086970-5086989 | None:intergenic | 30.0% | |
| TTAAGTGTCTTGCATATATG+AGG | + | chr4_3:5087442-5087461 | Msa0625780:intron | 30.0% | |
| AATATGTATGGTTTCACTCT+TGG | - | chr4_3:5087577-5087596 | None:intergenic | 30.0% | |
| AAATCAAAAGCTGAAAGACT+TGG | + | chr4_3:5087600-5087619 | Msa0625780:CDS | 30.0% | |
| AATCAAAAGCTGAAAGACTT+GGG | + | chr4_3:5087601-5087620 | Msa0625780:CDS | 30.0% | |
| TCATATAAACATTGCTTCAC+AGG | - | chr4_3:5087640-5087659 | None:intergenic | 30.0% | |
| ACACTAAGCAATATGGACAA+TGG | - | chr4_3:5084913-5084932 | None:intergenic | 35.0% | |
| AAGTGACACACTAAGCAATA+TGG | - | chr4_3:5084920-5084939 | None:intergenic | 35.0% | |
| CACTAGAAAAGAAAGACCAA+TGG | - | chr4_3:5084999-5085018 | None:intergenic | 35.0% | |
| ! | GACTGATGAAGTGTTATCAT+AGG | - | chr4_3:5085095-5085114 | None:intergenic | 35.0% |
| AAATTTGCATACCTGGGTTT+CGG | - | chr4_3:5085222-5085241 | None:intergenic | 35.0% | |
| CGTGATAAATTTGCATACCT+GGG | - | chr4_3:5085228-5085247 | None:intergenic | 35.0% | |
| TCGTGATAAATTTGCATACC+TGG | - | chr4_3:5085229-5085248 | None:intergenic | 35.0% | |
| GATCACTTGAAAGAATTGGA+AGG | + | chr4_3:5085477-5085496 | Msa0625780:CDS | 35.0% | |
| TCTATCCAATCTGTTGTTCA+TGG | + | chr4_3:5085549-5085568 | Msa0625780:CDS | 35.0% | |
| AAAATAACTCACAGGGTTGT+CGG | - | chr4_3:5085610-5085629 | None:intergenic | 35.0% | |
| CAACATCTCTACTCGTATTT+GGG | - | chr4_3:5085846-5085865 | None:intergenic | 35.0% | |
| ACAACATCTCTACTCGTATT+TGG | - | chr4_3:5085847-5085866 | None:intergenic | 35.0% | |
| TGCAGAACTGGTATTGTTAT+GGG | + | chr4_3:5086044-5086063 | Msa0625780:intron | 35.0% | |
| TATGAGACAAATTCTGCTTC+TGG | + | chr4_3:5086289-5086308 | Msa0625780:CDS | 35.0% | |
| ! | TGGTGAGGTTGTTGAAATTT+TGG | + | chr4_3:5086345-5086364 | Msa0625780:CDS | 35.0% |
| !! | GAACTCGAGATTTTGTTTAC+AGG | + | chr4_3:5086548-5086567 | Msa0625780:intron | 35.0% |
| GTGTACATCTAACTTGATCT+TGG | + | chr4_3:5086676-5086695 | Msa0625780:intron | 35.0% | |
| GTACATCTAACTTGATCTTG+GGG | + | chr4_3:5086678-5086697 | Msa0625780:intron | 35.0% | |
| AAACACCAATTGATGCAGAA+AGG | + | chr4_3:5086787-5086806 | Msa0625780:intron | 35.0% | |
| !! | CATTACCAGCCACTATTTTT+AGG | + | chr4_3:5086958-5086977 | Msa0625780:intron | 35.0% |
| ! | ACACACGATATTTGTTAACG+CGG | + | chr4_3:5087307-5087326 | Msa0625780:intron | 35.0% |
| TAATCTATAGTCGCAGAGAT+AGG | - | chr4_3:5087347-5087366 | None:intergenic | 35.0% | |
| !! | TCAAAGACTTGGTGGACATT+AGG | + | chr4_3:5084856-5084875 | Msa0625780:five_prime_UTR | 40.0% |
| GGAAGATAGATGCTTCTTGT+TGG | - | chr4_3:5084943-5084962 | None:intergenic | 40.0% | |
| ! | GATGAAGTGTTATCATAGGC+AGG | - | chr4_3:5085091-5085110 | None:intergenic | 40.0% |
| GATAACACTTCATCAGTCTC+TGG | + | chr4_3:5085097-5085116 | Msa0625780:CDS | 40.0% | |
| !! | TTGGCTTGTCAAACTTCTCT+TGG | + | chr4_3:5085168-5085187 | Msa0625780:CDS | 40.0% |
| GTCAAACTTCTCTTGGAAAG+AGG | + | chr4_3:5085175-5085194 | Msa0625780:CDS | 40.0% | |
| GAAAGAGGTTACACTGTTAG+AGG | + | chr4_3:5085190-5085209 | Msa0625780:CDS | 40.0% | |
| AGAGAGGCTAACTTTGCATA+AGG | + | chr4_3:5085506-5085525 | Msa0625780:CDS | 40.0% | |
| TTCTTTGTTCCATTCACTGC+TGG | - | chr4_3:5085748-5085767 | None:intergenic | 40.0% | |
| GTTGTGTTCACTTCATCGAT+TGG | + | chr4_3:5085805-5085824 | Msa0625780:CDS | 40.0% | |
| ! | GTTCACTTCATCGATTGGAA+CGG | + | chr4_3:5085810-5085829 | Msa0625780:CDS | 40.0% |
| ATCGATTGGAACGGTCTATA+TGG | + | chr4_3:5085819-5085838 | Msa0625780:CDS | 40.0% | |
| GTGCAGAACTGGTATTGTTA+TGG | + | chr4_3:5086043-5086062 | Msa0625780:intron | 40.0% | |
| GTATTGTTATGGGAAGACAG+TGG | + | chr4_3:5086054-5086073 | Msa0625780:CDS | 40.0% | |
| CACATCCTCAAGTACCTTAA+TGG | + | chr4_3:5086190-5086209 | Msa0625780:CDS | 40.0% | |
| !! | AAGTTTTGGCAGCACCATTA+AGG | - | chr4_3:5086207-5086226 | None:intergenic | 40.0% |
| TGGGTACTCAGGAAAATACT+TGG | - | chr4_3:5086371-5086390 | None:intergenic | 40.0% | |
| ACACTTACTTGGTAGGAAGT+GGG | - | chr4_3:5086390-5086409 | None:intergenic | 40.0% | |
| AACACTTACTTGGTAGGAAG+TGG | - | chr4_3:5086391-5086410 | None:intergenic | 40.0% | |
| ATCTAACTTGATCTTGGGGT+GGG | + | chr4_3:5086682-5086701 | Msa0625780:intron | 40.0% | |
| ACCAATTGATGCAGAAAGGT+GGG | + | chr4_3:5086791-5086810 | Msa0625780:intron | 40.0% | |
| !! | GTCAAAGTTGGTATACCTAG+AGG | - | chr4_3:5086817-5086836 | None:intergenic | 40.0% |
| CTTCTCCTAAAAATAGTGGC+TGG | - | chr4_3:5086966-5086985 | None:intergenic | 40.0% | |
| GTGTGTGACAATACAATGGT+TGG | - | chr4_3:5086995-5087014 | None:intergenic | 40.0% | |
| GTGTGTGTGTGACAATACAA+TGG | - | chr4_3:5086999-5087018 | None:intergenic | 40.0% | |
| ! | CGATATTTGTTAACGCGGTT+TGG | + | chr4_3:5087312-5087331 | Msa0625780:intron | 40.0% |
| AAAGCTGAAAGACTTGGGAT+TGG | + | chr4_3:5087606-5087625 | Msa0625780:CDS | 40.0% | |
| GTTAGGAGTCTACAAGAGAA+AGG | + | chr4_3:5087664-5087683 | Msa0625780:CDS | 40.0% | |
| TAAGCAGAGTCTTCTTGCAT+GGG | - | chr4_3:5087706-5087725 | None:intergenic | 40.0% | |
| TTAAGCAGAGTCTTCTTGCA+TGG | - | chr4_3:5087707-5087726 | None:intergenic | 40.0% | |
| AACACTTCATCAGTCTCTGG+TGG | + | chr4_3:5085100-5085119 | Msa0625780:CDS | 45.0% | |
| AATTGGAAGGAGCAAGAGAG+AGG | + | chr4_3:5085490-5085509 | Msa0625780:CDS | 45.0% | |
| GGCAACCATGAACAACAGAT+TGG | - | chr4_3:5085557-5085576 | None:intergenic | 45.0% | |
| TCTGTTGTTCATGGTTGCCA+TGG | + | chr4_3:5085558-5085577 | Msa0625780:CDS | 45.0% | |
| !! | AGAGCATTGCAAGAACACCA+AGG | + | chr4_3:5085894-5085913 | Msa0625780:CDS | 45.0% |
| AGTGGCTGAACAATCAGCAT+GGG | + | chr4_3:5086072-5086091 | Msa0625780:CDS | 45.0% | |
| ATGGTCCAAGAACCACAACT+GGG | - | chr4_3:5086138-5086157 | None:intergenic | 45.0% | |
| AATGGTCCAAGAACCACAAC+TGG | - | chr4_3:5086139-5086158 | None:intergenic | 45.0% | |
| ! | CAGCACCATTAAGGTACTTG+AGG | - | chr4_3:5086198-5086217 | None:intergenic | 45.0% |
| TGTGAAACTGCTTTGCATCG+TGG | + | chr4_3:5086325-5086344 | Msa0625780:CDS | 45.0% | |
| CTTAGTTGAGAGAGGAGAGT+TGG | - | chr4_3:5086507-5086526 | None:intergenic | 45.0% | |
| CATCTAACTTGATCTTGGGG+TGG | + | chr4_3:5086681-5086700 | Msa0625780:intron | 45.0% | |
| TCTAACTTGATCTTGGGGTG+GGG | + | chr4_3:5086683-5086702 | Msa0625780:intron | 45.0% | |
| CACCAATTGATGCAGAAAGG+TGG | + | chr4_3:5086790-5086809 | Msa0625780:intron | 45.0% | |
| GTCGCAGAGATAGGTACAAT+TGG | - | chr4_3:5087338-5087357 | None:intergenic | 45.0% | |
| TCTTCTTGCATGGGAGGAAT+AGG | - | chr4_3:5087697-5087716 | None:intergenic | 45.0% | |
| !! | AATATTAAGATTAATTAATT+AGG | + | chr4_3:5085995-5086014 | Msa0625780:intron | 5.0% |
| !! | AAAAATTAAAATATGATAAA+AGG | - | chr4_3:5087841-5087860 | None:intergenic | 5.0% |
| GACCAAATCGTGTGTGTCAC+CGG | + | chr4_3:5085124-5085143 | Msa0625780:CDS | 50.0% | |
| TTGCATACCTGGGTTTCGGA+CGG | - | chr4_3:5085218-5085237 | None:intergenic | 50.0% | |
| AAGCTGTGTGGAACACACCA+TGG | - | chr4_3:5085578-5085597 | None:intergenic | 50.0% | |
| ATGTTGGAGCCAGCAGTGAA+TGG | + | chr4_3:5085736-5085755 | Msa0625780:CDS | 50.0% | |
| CAGTGGCTGAACAATCAGCA+TGG | + | chr4_3:5086071-5086090 | Msa0625780:CDS | 50.0% | |
| GGTTGTTGTGAACCCAGTTG+TGG | + | chr4_3:5086123-5086142 | Msa0625780:CDS | 50.0% | |
| GTGAACCCAGTTGTGGTTCT+TGG | + | chr4_3:5086130-5086149 | Msa0625780:CDS | 50.0% | |
| AACTGCTTTGCATCGTGGTG+AGG | + | chr4_3:5086330-5086349 | Msa0625780:CDS | 50.0% | |
| TTGGTAGGAAGTGGGTACTC+AGG | - | chr4_3:5086382-5086401 | None:intergenic | 50.0% | |
| GCCCACCTTTCTGCATCAAT+TGG | - | chr4_3:5086795-5086814 | None:intergenic | 50.0% | |
| CTTGCATGGGAGGAATAGGA+AGG | - | chr4_3:5087693-5087712 | None:intergenic | 50.0% | |
| CACCGGTGACACACACGATT+TGG | - | chr4_3:5085129-5085148 | None:intergenic | 55.0% | |
| !! | CTGGCGGGTTCATAGCTTCT+TGG | + | chr4_3:5085149-5085168 | Msa0625780:CDS | 55.0% |
| AACTTGATCTTGGGGTGGGG+TGG | + | chr4_3:5086686-5086705 | Msa0625780:intron | 55.0% | |
| ACTTGATCTTGGGGTGGGGT+GGG | + | chr4_3:5086687-5086706 | Msa0625780:intron | 55.0% | |
| ATGCAGAAAGGTGGGCCTCT+AGG | + | chr4_3:5086799-5086818 | Msa0625780:intron | 55.0% | |
| GCAGAGTCTTCTTGCATGGG+AGG | - | chr4_3:5087703-5087722 | None:intergenic | 55.0% | |
| ATCGTGTGTGTCACCGGTGC+TGG | + | chr4_3:5085130-5085149 | Msa0625780:CDS | 60.0% | |
| AGCTATGAACCCGCCAGCAC+CGG | - | chr4_3:5085146-5085165 | None:intergenic | 60.0% | |
| AGAGGAACCGTCCGAAACCC+AGG | + | chr4_3:5085208-5085227 | Msa0625780:CDS | 60.0% | |
| CGGTGACAGGAGAAGCTGTG+TGG | - | chr4_3:5085590-5085609 | None:intergenic | 60.0% | |
| CTCACAGGGTTGTCGGTGAC+AGG | - | chr4_3:5085603-5085622 | None:intergenic | 60.0% | |
| ! | GTGTGTGTCACCGGTGCTGG+CGG | + | chr4_3:5085133-5085152 | Msa0625780:CDS | 65.0% |
| !! | TGTGTGTCACCGGTGCTGGC+GGG | + | chr4_3:5085134-5085153 | Msa0625780:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_3 | gene | 5084799 | 5087897 | 5084799 | ID=Msa0625780;Name=Msa0625780 |
| chr4_3 | mRNA | 5084799 | 5087897 | 5084799 | ID=Msa0625780-mRNA-1;Parent=Msa0625780;Name=Msa0625780-mRNA-1;_AED=0.24;_eAED=0.24;_QI=286|1|1|1|0.8|0.66|6|148|336 |
| chr4_3 | exon | 5084799 | 5085229 | 5084799 | ID=Msa0625780-mRNA-1:exon:1396;Parent=Msa0625780-mRNA-1 |
| chr4_3 | exon | 5085463 | 5085617 | 5085463 | ID=Msa0625780-mRNA-1:exon:1397;Parent=Msa0625780-mRNA-1 |
| chr4_3 | exon | 5085730 | 5085915 | 5085730 | ID=Msa0625780-mRNA-1:exon:1398;Parent=Msa0625780-mRNA-1 |
| chr4_3 | exon | 5086049 | 5086401 | 5086049 | ID=Msa0625780-mRNA-1:exon:1399;Parent=Msa0625780-mRNA-1 |
| chr4_3 | exon | 5087555 | 5087790 | 5087555 | ID=Msa0625780-mRNA-1:exon:1400;Parent=Msa0625780-mRNA-1 |
| chr4_3 | exon | 5087814 | 5087897 | 5087814 | ID=Msa0625780-mRNA-1:exon:1401;Parent=Msa0625780-mRNA-1 |
| chr4_3 | five_prime_UTR | 5084799 | 5085084 | 5084799 | ID=Msa0625780-mRNA-1:five_prime_utr;Parent=Msa0625780-mRNA-1 |
| chr4_3 | CDS | 5085085 | 5085229 | 5085085 | ID=Msa0625780-mRNA-1:cds;Parent=Msa0625780-mRNA-1 |
| chr4_3 | CDS | 5085463 | 5085617 | 5085463 | ID=Msa0625780-mRNA-1:cds;Parent=Msa0625780-mRNA-1 |
| chr4_3 | CDS | 5085730 | 5085915 | 5085730 | ID=Msa0625780-mRNA-1:cds;Parent=Msa0625780-mRNA-1 |
| chr4_3 | CDS | 5086049 | 5086401 | 5086049 | ID=Msa0625780-mRNA-1:cds;Parent=Msa0625780-mRNA-1 |
| chr4_3 | CDS | 5087555 | 5087726 | 5087555 | ID=Msa0625780-mRNA-1:cds;Parent=Msa0625780-mRNA-1 |
| chr4_3 | three_prime_UTR | 5087727 | 5087790 | 5087727 | ID=Msa0625780-mRNA-1:three_prime_utr;Parent=Msa0625780-mRNA-1 |
| chr4_3 | three_prime_UTR | 5087814 | 5087897 | 5087814 | ID=Msa0625780-mRNA-1:three_prime_utr;Parent=Msa0625780-mRNA-1 |
| Gene Sequence |
| Protein sequence |
