Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0585840 | XP_003604238.1 | 98.810 | 336 | 4 | 0 | 1 | 336 | 1 | 336 | 0.0 | 689 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0585840 | sp|A0A059TC02|CCR1_PETHY | 75.460 | 326 | 78 | 1 | 9 | 334 | 3 | 326 | 0.0 | 521 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0013270 | Msa0585840 | 0.813965 | 1.959584e-51 | -8.615850e-47 |
| Msa0037180 | Msa0585840 | 0.810366 | 1.194738e-50 | -8.615850e-47 |
| Msa0045810 | Msa0585840 | 0.812922 | 3.322168e-51 | -8.615850e-47 |
| Msa0062190 | Msa0585840 | 0.820569 | 6.399422e-53 | -8.615850e-47 |
| Msa0072180 | Msa0585840 | 0.816292 | 5.962047e-52 | -8.615850e-47 |
| Msa0092220 | Msa0585840 | 0.818513 | 1.884615e-52 | -8.615850e-47 |
| Msa0106540 | Msa0585840 | 0.801306 | 9.582987e-49 | -8.615850e-47 |
| Msa0177320 | Msa0585840 | 0.817329 | 3.488573e-52 | -8.615850e-47 |
| Msa0204950 | Msa0585840 | 0.825180 | 5.395983e-54 | -8.615850e-47 |
| Msa0216340 | Msa0585840 | 0.832597 | 8.632413e-56 | -8.615850e-47 |
| Msa0378350 | Msa0585840 | 0.803428 | 3.503470e-49 | -8.615850e-47 |
| Msa0386880 | Msa0585840 | 0.804904 | 1.727075e-49 | -8.615850e-47 |
| Msa0389460 | Msa0585840 | 0.801405 | 9.145746e-49 | -8.615850e-47 |
| Msa0403740 | Msa0585840 | -0.809658 | 1.696885e-50 | -8.615850e-47 |
| Msa0441600 | Msa0585840 | 0.815999 | 6.931102e-52 | -8.615850e-47 |
| Msa0456450 | Msa0585840 | -0.809483 | 1.850335e-50 | -8.615850e-47 |
| Msa0457070 | Msa0585840 | -0.804071 | 2.575956e-49 | -8.615850e-47 |
| Msa0256540 | Msa0585840 | 0.802473 | 5.517913e-49 | -8.615850e-47 |
| Msa0266220 | Msa0585840 | 0.805939 | 1.047540e-49 | -8.615850e-47 |
| Msa0281470 | Msa0585840 | 0.812679 | 3.754204e-51 | -8.615850e-47 |
| Msa0318490 | Msa0585840 | 0.800892 | 1.164342e-48 | -8.615850e-47 |
| Msa0320600 | Msa0585840 | 0.811853 | 5.686584e-51 | -8.615850e-47 |
| Msa0334320 | Msa0585840 | 0.832990 | 6.894680e-56 | -8.615850e-47 |
| Msa0351780 | Msa0585840 | 0.805461 | 1.320089e-49 | -8.615850e-47 |
| Msa0364030 | Msa0585840 | -0.810775 | 9.745394e-51 | -8.615850e-47 |
| Msa0484210 | Msa0585840 | -0.806225 | 9.122659e-50 | -8.615850e-47 |
| Msa0489120 | Msa0585840 | 0.808085 | 3.682317e-50 | -8.615850e-47 |
| Msa0529850 | Msa0585840 | 0.859189 | 4.911066e-63 | -8.615850e-47 |
| Msa0565700 | Msa0585840 | 0.821765 | 3.392150e-53 | -8.615850e-47 |
| Msa0567440 | Msa0585840 | 0.804716 | 1.890246e-49 | -8.615850e-47 |
| Msa0579070 | Msa0585840 | -0.822141 | 2.776976e-53 | -8.615850e-47 |
| Msa0581350 | Msa0585840 | 0.802512 | 5.415434e-49 | -8.615850e-47 |
| Msa0585330 | Msa0585840 | 0.963390 | 5.007093e-122 | -8.615850e-47 |
| Msa0585840 | Msa0604220 | 0.801511 | 8.699407e-49 | -8.615850e-47 |
| Msa0585840 | Msa0610700 | -0.820637 | 6.175037e-53 | -8.615850e-47 |
| Msa0585840 | Msa0625780 | 0.982443 | 4.177966e-155 | -8.615850e-47 |
| Msa0585840 | Msa0663480 | 0.962801 | 2.597291e-121 | -8.615850e-47 |
| Msa0585840 | Msa0685060 | 0.824761 | 6.773311e-54 | -8.615850e-47 |
| Msa0585840 | Msa0687580 | 0.807776 | 4.284223e-50 | -8.615850e-47 |
| Msa0585840 | Msa0701660 | 0.803079 | 4.137511e-49 | -8.615850e-47 |
| Msa0585840 | Msa0772490 | 0.811941 | 5.441299e-51 | -8.615850e-47 |
| Msa0585840 | Msa0818720 | 0.800682 | 1.285294e-48 | -8.615850e-47 |
| Msa0585840 | Msa0818760 | 0.802002 | 6.897823e-49 | -8.615850e-47 |
| Msa0585840 | Msa0827870 | 0.801960 | 7.034840e-49 | -8.615850e-47 |
| Msa0585840 | Msa0838620 | -0.812430 | 4.256395e-51 | -8.615850e-47 |
| Msa0585840 | Msa0853590 | 0.816493 | 5.374240e-52 | -8.615850e-47 |
| Msa0585840 | Msa0878820 | 0.806406 | 8.354191e-50 | -8.615850e-47 |
| Msa0585840 | Msa0945030 | 0.811639 | 6.329881e-51 | -8.615850e-47 |
| Msa0585840 | Msa1029830 | 0.803825 | 2.897448e-49 | -8.615850e-47 |
| Msa0585840 | Msa1068950 | 0.825719 | 4.020291e-54 | -8.615850e-47 |
| Msa0585840 | Msa1088470 | 0.801417 | 9.091810e-49 | -8.615850e-47 |
| Msa0585840 | Msa1129200 | -0.807366 | 5.235939e-50 | -8.615850e-47 |
| Msa0585840 | Msa1155610 | 0.814435 | 1.542710e-51 | -8.615850e-47 |
| Msa0585840 | Msa1156720 | 0.850070 | 2.152884e-60 | -8.615850e-47 |
| Msa0585840 | Msa1160530 | 0.802236 | 6.174781e-49 | -8.615850e-47 |
| Msa0585840 | Msa1165460 | 0.800786 | 1.223699e-48 | -8.615850e-47 |
| Msa0585840 | Msa1205270 | -0.809715 | 1.650146e-50 | -8.615850e-47 |
| Msa0585840 | Msa1221270 | 0.810506 | 1.114594e-50 | -8.615850e-47 |
| Msa0585840 | Msa1342360 | -0.808890 | 2.479881e-50 | -8.615850e-47 |
| Msa0585840 | Msa1350700 | 0.807761 | 4.315970e-50 | -8.615850e-47 |
| Msa0585840 | Msa1360260 | 0.809290 | 2.035941e-50 | -8.615850e-47 |
| Msa0585840 | Msa1365820 | 0.813148 | 2.963861e-51 | -8.615850e-47 |
| Msa0585840 | Msa1368390 | 0.815385 | 9.499968e-52 | -8.615850e-47 |
| Msa0585840 | Msa1405830 | 0.801254 | 9.819172e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0585840 | MtrunA17_Chr4g0001321 | 98.810 | 336 | 4 | 0 | 1 | 336 | 1 | 336 | 0.0 | 689 |
| Msa0585840 | MtrunA17_Chr2g0333781 | 81.155 | 329 | 59 | 2 | 7 | 335 | 12 | 337 | 0.0 | 536 |
| Msa0585840 | MtrunA17_Chr3g0077221 | 51.242 | 322 | 148 | 6 | 9 | 323 | 2 | 321 | 2.18e-105 | 311 |
| Msa0585840 | MtrunA17_Chr3g0077231 | 50.159 | 315 | 148 | 6 | 16 | 323 | 5 | 317 | 5.34e-104 | 308 |
| Msa0585840 | MtrunA17_Chr4g0039311 | 48.125 | 320 | 157 | 6 | 11 | 323 | 5 | 322 | 9.67e-97 | 289 |
| Msa0585840 | MtrunA17_Chr5g0431311 | 46.519 | 316 | 162 | 3 | 15 | 324 | 3 | 317 | 1.92e-96 | 288 |
| Msa0585840 | MtrunA17_Chr8g0364051 | 47.531 | 324 | 160 | 6 | 10 | 326 | 1 | 321 | 1.19e-95 | 286 |
| Msa0585840 | MtrunA17_Chr4g0002661 | 46.296 | 324 | 162 | 4 | 11 | 326 | 4 | 323 | 2.29e-95 | 286 |
| Msa0585840 | MtrunA17_Chr4g0039321 | 47.500 | 320 | 159 | 7 | 11 | 323 | 3 | 320 | 6.94e-95 | 285 |
| Msa0585840 | MtrunA17_Chr8g0363831 | 47.352 | 321 | 159 | 6 | 10 | 323 | 2 | 319 | 3.67e-93 | 280 |
| Msa0585840 | MtrunA17_Chr4g0002961 | 46.914 | 324 | 160 | 4 | 11 | 326 | 4 | 323 | 9.93e-89 | 269 |
| Msa0585840 | MtrunA17_Chr3g0106111 | 42.089 | 316 | 176 | 3 | 15 | 324 | 3 | 317 | 1.29e-83 | 256 |
| Msa0585840 | MtrunA17_Chr5g0423551 | 41.456 | 316 | 177 | 5 | 18 | 326 | 5 | 319 | 3.17e-80 | 247 |
| Msa0585840 | MtrunA17_Chr1g0155411 | 41.411 | 326 | 173 | 11 | 15 | 327 | 6 | 326 | 1.47e-76 | 238 |
| Msa0585840 | MtrunA17_Chr2g0291541 | 41.176 | 323 | 177 | 6 | 14 | 326 | 7 | 326 | 2.82e-75 | 234 |
| Msa0585840 | MtrunA17_Chr2g0331211 | 39.506 | 324 | 185 | 5 | 17 | 332 | 5 | 325 | 8.01e-75 | 233 |
| Msa0585840 | MtrunA17_Chr1g0155431 | 41.159 | 328 | 171 | 12 | 15 | 327 | 6 | 326 | 1.86e-73 | 230 |
| Msa0585840 | MtrunA17_Chr4g0048961 | 35.385 | 325 | 189 | 9 | 18 | 324 | 15 | 336 | 4.16e-54 | 180 |
| Msa0585840 | MtrunA17_Chr7g0245741 | 33.333 | 327 | 201 | 9 | 13 | 326 | 4 | 326 | 4.32e-54 | 180 |
| Msa0585840 | MtrunA17_Chr7g0245671 | 33.837 | 331 | 197 | 12 | 13 | 326 | 4 | 329 | 1.26e-51 | 174 |
| Msa0585840 | MtrunA17_Chr7g0245641 | 34.242 | 330 | 197 | 11 | 13 | 326 | 41 | 366 | 3.93e-51 | 173 |
| Msa0585840 | MtrunA17_Chr4g0042101 | 34.328 | 335 | 190 | 10 | 18 | 327 | 25 | 354 | 1.28e-49 | 169 |
| Msa0585840 | MtrunA17_Chr7g0245731 | 33.028 | 327 | 202 | 10 | 13 | 326 | 54 | 376 | 1.37e-49 | 169 |
| Msa0585840 | MtrunA17_Chr7g0245691 | 32.335 | 334 | 199 | 12 | 13 | 326 | 4 | 330 | 5.51e-48 | 164 |
| Msa0585840 | MtrunA17_Chr4g0010991 | 33.846 | 325 | 197 | 10 | 17 | 326 | 8 | 329 | 1.91e-44 | 155 |
| Msa0585840 | MtrunA17_Chr7g0245631 | 32.622 | 328 | 202 | 12 | 13 | 326 | 4 | 326 | 3.53e-44 | 154 |
| Msa0585840 | MtrunA17_Chr6g0450211 | 34.333 | 300 | 178 | 8 | 13 | 299 | 51 | 344 | 3.22e-40 | 144 |
| Msa0585840 | MtrunA17_Chr7g0245711 | 30.000 | 290 | 186 | 10 | 50 | 326 | 3 | 288 | 5.69e-34 | 126 |
| Msa0585840 | MtrunA17_Chr5g0411071 | 30.449 | 312 | 192 | 10 | 2 | 306 | 3 | 296 | 9.71e-34 | 125 |
| Msa0585840 | MtrunA17_Chr2g0282001 | 27.219 | 338 | 217 | 10 | 17 | 328 | 7 | 341 | 1.86e-28 | 112 |
| Msa0585840 | MtrunA17_Chr7g0275521 | 27.059 | 340 | 212 | 13 | 17 | 326 | 7 | 340 | 2.22e-26 | 107 |
| Msa0585840 | MtrunA17_Chr2g0281991 | 27.874 | 348 | 202 | 13 | 17 | 328 | 8 | 342 | 2.90e-26 | 107 |
| Msa0585840 | MtrunA17_Chr2g0282011 | 26.393 | 341 | 208 | 11 | 17 | 324 | 8 | 338 | 2.02e-25 | 104 |
| Msa0585840 | MtrunA17_Chr3g0080551 | 41.284 | 109 | 61 | 3 | 107 | 212 | 17 | 125 | 1.08e-18 | 80.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0585840 | AT1G80820.1 | 73.968 | 315 | 82 | 0 | 15 | 329 | 6 | 320 | 3.08e-171 | 479 |
| Msa0585840 | AT1G15950.3 | 72.871 | 317 | 86 | 0 | 10 | 326 | 6 | 322 | 3.39e-167 | 469 |
| Msa0585840 | AT1G15950.1 | 72.871 | 317 | 86 | 0 | 10 | 326 | 6 | 322 | 3.39e-167 | 469 |
| Msa0585840 | AT1G15950.2 | 72.168 | 309 | 86 | 0 | 10 | 318 | 6 | 314 | 1.22e-159 | 450 |
| Msa0585840 | AT1G80820.2 | 73.308 | 266 | 71 | 0 | 15 | 280 | 6 | 271 | 4.14e-138 | 393 |
| Msa0585840 | AT1G15950.6 | 72.222 | 270 | 75 | 0 | 11 | 280 | 7 | 276 | 1.63e-136 | 389 |
| Msa0585840 | AT1G15950.4 | 71.533 | 274 | 78 | 0 | 11 | 284 | 7 | 280 | 1.90e-136 | 389 |
| Msa0585840 | AT1G15950.5 | 72.119 | 269 | 75 | 0 | 11 | 279 | 7 | 275 | 9.67e-136 | 387 |
| Msa0585840 | AT1G15950.7 | 75.893 | 224 | 54 | 0 | 103 | 326 | 1 | 224 | 7.38e-115 | 333 |
| Msa0585840 | AT5G19440.1 | 51.090 | 321 | 148 | 6 | 11 | 324 | 4 | 322 | 3.58e-105 | 311 |
| Msa0585840 | AT1G51410.1 | 48.457 | 324 | 156 | 7 | 11 | 326 | 3 | 323 | 3.35e-98 | 293 |
| Msa0585840 | AT5G58490.1 | 44.025 | 318 | 171 | 3 | 15 | 326 | 7 | 323 | 3.56e-87 | 265 |
| Msa0585840 | AT1G66800.1 | 47.385 | 325 | 150 | 8 | 10 | 323 | 1 | 315 | 1.08e-86 | 264 |
| Msa0585840 | AT1G09480.2 | 44.037 | 327 | 168 | 7 | 10 | 326 | 1 | 322 | 4.83e-86 | 262 |
| Msa0585840 | AT2G33590.1 | 47.436 | 312 | 154 | 5 | 17 | 322 | 9 | 316 | 1.26e-85 | 261 |
| Msa0585840 | AT1G09480.1 | 44.037 | 327 | 168 | 7 | 10 | 326 | 48 | 369 | 1.33e-85 | 263 |
| Msa0585840 | AT1G09510.1 | 45.031 | 322 | 166 | 7 | 10 | 323 | 1 | 319 | 3.26e-85 | 260 |
| Msa0585840 | AT1G09490.1 | 44.410 | 322 | 168 | 7 | 13 | 326 | 4 | 322 | 9.74e-85 | 259 |
| Msa0585840 | AT2G02400.1 | 41.509 | 318 | 177 | 4 | 15 | 326 | 4 | 318 | 9.50e-83 | 254 |
| Msa0585840 | AT1G09500.1 | 44.000 | 325 | 168 | 8 | 10 | 323 | 1 | 322 | 2.98e-81 | 250 |
| Msa0585840 | AT1G76470.1 | 43.614 | 321 | 171 | 3 | 15 | 327 | 5 | 323 | 4.19e-80 | 247 |
| Msa0585840 | AT4G35420.1 | 42.587 | 317 | 172 | 7 | 17 | 326 | 8 | 321 | 1.01e-79 | 246 |
| Msa0585840 | AT1G68540.1 | 40.379 | 317 | 179 | 5 | 19 | 326 | 6 | 321 | 7.25e-75 | 234 |
| Msa0585840 | AT1G09500.3 | 46.182 | 275 | 135 | 7 | 10 | 274 | 1 | 272 | 1.39e-74 | 231 |
| Msa0585840 | AT2G33600.1 | 45.513 | 312 | 160 | 5 | 17 | 322 | 9 | 316 | 1.24e-73 | 230 |
| Msa0585840 | AT1G25460.1 | 36.825 | 315 | 191 | 4 | 19 | 326 | 6 | 319 | 1.14e-66 | 213 |
| Msa0585840 | AT5G42800.1 | 39.264 | 326 | 182 | 10 | 15 | 328 | 6 | 327 | 7.31e-66 | 213 |
| Msa0585840 | AT1G09490.2 | 41.135 | 282 | 156 | 6 | 52 | 326 | 13 | 291 | 2.99e-64 | 205 |
| Msa0585840 | AT1G09500.2 | 41.667 | 288 | 154 | 8 | 47 | 323 | 4 | 288 | 2.45e-61 | 198 |
| Msa0585840 | AT2G45400.1 | 35.976 | 328 | 191 | 10 | 16 | 326 | 39 | 364 | 5.20e-53 | 179 |
| Msa0585840 | AT1G61720.1 | 34.084 | 311 | 185 | 9 | 13 | 306 | 9 | 316 | 6.98e-51 | 172 |
| Msa0585840 | AT2G45400.2 | 37.276 | 279 | 160 | 7 | 16 | 279 | 39 | 317 | 5.11e-49 | 167 |
| Msa0585840 | AT4G27250.1 | 35.647 | 317 | 171 | 12 | 18 | 306 | 14 | 325 | 1.35e-47 | 164 |
| Msa0585840 | AT4G27250.2 | 35.922 | 309 | 171 | 12 | 18 | 306 | 14 | 315 | 5.71e-47 | 162 |
| Msa0585840 | AT1G68540.2 | 37.441 | 211 | 130 | 2 | 117 | 326 | 5 | 214 | 3.35e-46 | 156 |
| Msa0585840 | AT2G23910.1 | 32.441 | 299 | 176 | 8 | 18 | 302 | 11 | 297 | 6.42e-44 | 153 |
| Msa0585840 | AT2G23910.2 | 32.971 | 276 | 160 | 7 | 18 | 280 | 11 | 274 | 7.42e-44 | 152 |
| Msa0585840 | AT2G23910.3 | 33.212 | 274 | 158 | 7 | 18 | 278 | 11 | 272 | 1.29e-43 | 151 |
| Msa0585840 | AT4G30470.1 | 30.952 | 294 | 186 | 6 | 18 | 302 | 11 | 296 | 1.24e-38 | 139 |
| Msa0585840 | AT2G45400.3 | 32.653 | 294 | 180 | 9 | 49 | 326 | 16 | 307 | 1.42e-35 | 131 |
| Msa0585840 | AT5G14700.1 | 33.213 | 277 | 161 | 8 | 12 | 270 | 50 | 320 | 1.74e-35 | 132 |
| Msa0585840 | AT2G23910.4 | 31.679 | 262 | 154 | 7 | 54 | 302 | 14 | 263 | 1.16e-34 | 128 |
| Msa0585840 | AT2G45400.4 | 37.037 | 216 | 122 | 6 | 16 | 217 | 39 | 254 | 5.41e-34 | 125 |
| Msa0585840 | AT5G14700.2 | 32.444 | 225 | 132 | 6 | 12 | 221 | 50 | 269 | 9.25e-27 | 107 |
| Msa0585840 | AT4G33360.2 | 28.279 | 244 | 152 | 8 | 17 | 253 | 15 | 242 | 1.11e-17 | 82.8 |
| Msa0585840 | AT4G33360.3 | 28.279 | 244 | 152 | 8 | 17 | 253 | 3 | 230 | 1.39e-17 | 82.8 |
| Msa0585840 | AT4G33360.1 | 28.279 | 244 | 152 | 8 | 17 | 253 | 15 | 242 | 1.81e-17 | 82.4 |
Find 88 sgRNAs with CRISPR-Local
Find 181 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACAACATCTCTACTCGTATT+TGG | 0.148678 | 4_2:+6963476 | None:intergenic |
| TAAGAAGAAATAAATTAATT+TGG | 0.207846 | 4_2:+6964269 | None:intergenic |
| CTGGCGGGTTCATAGCTTCT+TGG | 0.234598 | 4_2:-6964171 | Msa0585840:CDS |
| CACATCCTCAAGTACCTTAA+TGG | 0.244324 | 4_2:-6963130 | Msa0585840:CDS |
| GTGAACCCAGTTGTGGTTCT+TGG | 0.275623 | 4_2:-6963190 | Msa0585840:CDS |
| TCTTTCAAGTGATCATTCTT+TGG | 0.278143 | 4_2:+6963852 | None:intergenic |
| TGGTGAGGTTGTTGAAATTT+TGG | 0.282212 | 4_2:-6962975 | Msa0585840:CDS |
| ATGTGATAACTCAAATAATA+TGG | 0.289301 | 4_2:+6964363 | None:intergenic |
| AAAAGAAAATCAAGTTGATT+TGG | 0.293241 | 4_2:-6963218 | Msa0585840:CDS |
| ATCGATTGGAACGGTCTATA+TGG | 0.308610 | 4_2:-6963501 | Msa0585840:CDS |
| GAATGATCACTTGAAAGAAT+TGG | 0.322640 | 4_2:-6963847 | Msa0585840:CDS |
| TTGGCTTGTCAAACTTCTCT+TGG | 0.330178 | 4_2:-6964152 | Msa0585840:CDS |
| AATATGTATGGTTTCACTCT+TGG | 0.331350 | 4_2:+6961745 | None:intergenic |
| TCTATCCAATCTGTTGTTCA+TGG | 0.337063 | 4_2:-6963771 | Msa0585840:CDS |
| CTATAATATAGTACTCTTGT+AGG | 0.339137 | 4_2:-6961578 | Msa0585840:three_prime_UTR |
| TATGAGACAAATTCTGCTTC+TGG | 0.341001 | 4_2:-6963031 | Msa0585840:CDS |
| TTCTTTGTTCCATTCACTGC+TGG | 0.346517 | 4_2:+6963575 | None:intergenic |
| AATGTTTATATGAAACTGTT+AGG | 0.352716 | 4_2:-6961672 | Msa0585840:CDS |
| TGTTGCATTCACATAAGTTT+TGG | 0.352789 | 4_2:+6963102 | None:intergenic |
| GAAAGAGGTTACACTGTTAG+AGG | 0.360156 | 4_2:-6964130 | Msa0585840:CDS |
| AAATTTGCATACCTGGGTTT+CGG | 0.363831 | 4_2:+6964101 | None:intergenic |
| TCAAAGACTTGGTGGACATT+AGG | 0.371496 | 4_2:-6964467 | Msa0585840:five_prime_UTR |
| GTGCAGAACTGGTATTGTTA+TGG | 0.378304 | 4_2:-6963277 | Msa0585840:intron |
| CAACATCTCTACTCGTATTT+GGG | 0.380185 | 4_2:+6963477 | None:intergenic |
| TCTTCTTGCATGGGAGGAAT+AGG | 0.388850 | 4_2:+6961625 | None:intergenic |
| ACAATCTTATGTTCATGTTA+AGG | 0.400887 | 4_2:-6963080 | Msa0585840:CDS |
| TTATTCTTTGCTATCTCCAT+TGG | 0.403938 | 4_2:-6964341 | Msa0585840:five_prime_UTR |
| ATCGTGTGTGTCACCGGTGC+TGG | 0.407046 | 4_2:-6964190 | Msa0585840:CDS |
| CACCGGTGACACACACGATT+TGG | 0.409017 | 4_2:+6964194 | None:intergenic |
| AAGTGACACATTGAGCAATA+TGG | 0.424890 | 4_2:+6964407 | None:intergenic |
| TGCAGAACTGGTATTGTTAT+GGG | 0.425363 | 4_2:-6963276 | Msa0585840:intron |
| TTAATTGTTGGTTGAAGTAA+TGG | 0.425863 | 4_2:+6963166 | None:intergenic |
| TCATATAAACATTGCTTCAC+AGG | 0.433601 | 4_2:+6961682 | None:intergenic |
| AATGGTCCAAGAACCACAAC+TGG | 0.433883 | 4_2:+6963184 | None:intergenic |
| TATAATATAGTACTCTTGTA+GGG | 0.442040 | 4_2:-6961577 | Msa0585840:three_prime_UTR |
| GGAAGATAGATGCTTCTTGT+TGG | 0.442890 | 4_2:+6964384 | None:intergenic |
| ATTGTACTAGCATTAATTGT+TGG | 0.463159 | 4_2:+6963154 | None:intergenic |
| GTCAAACTTCTCTTGGAAAG+AGG | 0.467940 | 4_2:-6964145 | Msa0585840:CDS |
| AAAATAACTCACAGGGTTGT+CGG | 0.470932 | 4_2:+6963713 | None:intergenic |
| AGAGAGGCTAACTTTGCATA+AGG | 0.471199 | 4_2:-6963814 | Msa0585840:CDS |
| AAATCAAAAGCTGAAAGACT+TGG | 0.471600 | 4_2:-6961719 | Msa0585840:CDS |
| GATAACACTTCATCAGTCTC+TGG | 0.493312 | 4_2:-6964223 | Msa0585840:CDS |
| GACTGATGAAGTGTTATCAT+AGG | 0.499014 | 4_2:+6964228 | None:intergenic |
| CATATAATAGGATGAGATGT+TGG | 0.502572 | 4_2:-6963600 | Msa0585840:intron |
| AACACTTACTTGGTAGGAAG+TGG | 0.504048 | 4_2:+6962932 | None:intergenic |
| TTATGTTCATGTTAAGGATG+TGG | 0.505241 | 4_2:-6963074 | Msa0585840:CDS |
| GTTGTGTTCACTTCATCGAT+TGG | 0.505971 | 4_2:-6963515 | Msa0585840:CDS |
| AAAGCTGAAAGACTTGGGAT+TGG | 0.510048 | 4_2:-6961713 | Msa0585840:CDS |
| CTCACAGGGTTGTCGGTGAC+AGG | 0.510560 | 4_2:+6963720 | None:intergenic |
| GACCAAATCGTGTGTGTCAC+CGG | 0.524328 | 4_2:-6964196 | Msa0585840:CDS |
| AGCTATGAACCCGCCAGCAC+CGG | 0.525430 | 4_2:+6964177 | None:intergenic |
| TTGTAGTTGATGAATCGTAT+TGG | 0.525667 | 4_2:-6963457 | Msa0585840:CDS |
| GGCAACCATGAACAACAGAT+TGG | 0.526807 | 4_2:+6963766 | None:intergenic |
| TTAAGCAGAGTCTTCTTGCA+TGG | 0.532426 | 4_2:+6961615 | None:intergenic |
| ATGTTGGAGCCAGCAGTGAA+TGG | 0.533675 | 4_2:-6963584 | Msa0585840:CDS |
| TGTGTGTCACCGGTGCTGGC+GGG | 0.540247 | 4_2:-6964186 | Msa0585840:CDS |
| GATGAAGTGTTATCATAGGC+AGG | 0.541028 | 4_2:+6964232 | None:intergenic |
| GTGTGTGTCACCGGTGCTGG+CGG | 0.544302 | 4_2:-6964187 | Msa0585840:CDS |
| AATCAAAAGCTGAAAGACTT+GGG | 0.547219 | 4_2:-6961718 | Msa0585840:CDS |
| TTGGTAGGAAGTGGGTACTC+AGG | 0.551005 | 4_2:+6962941 | None:intergenic |
| TCTGTTGTTCATGGTTGCCA+TGG | 0.552494 | 4_2:-6963762 | Msa0585840:CDS |
| ATATGAAACACTTACTTGGT+AGG | 0.553678 | 4_2:+6962926 | None:intergenic |
| TAAGCAGAGTCTTCTTGCAT+GGG | 0.557099 | 4_2:+6961616 | None:intergenic |
| AGAGGAACCGTCCGAAACCC+AGG | 0.563011 | 4_2:-6964112 | Msa0585840:intron |
| GTTAGGAGTCTACAAGAGAA+AGG | 0.565801 | 4_2:-6961655 | Msa0585840:CDS |
| GGTTGTTGTGAACCCAGTTG+TGG | 0.566597 | 4_2:-6963197 | Msa0585840:CDS |
| TGGGTACTCAGGAAAATACT+TGG | 0.568031 | 4_2:+6962952 | None:intergenic |
| GCAGAGTCTTCTTGCATGGG+AGG | 0.572180 | 4_2:+6961619 | None:intergenic |
| GATCACTTGAAAGAATTGGA+AGG | 0.576295 | 4_2:-6963843 | Msa0585840:CDS |
| CAGCACCATTAAGGTACTTG+AGG | 0.581125 | 4_2:+6963125 | None:intergenic |
| TTGCATACCTGGGTTTCGGA+CGG | 0.587038 | 4_2:+6964105 | None:intergenic |
| CACATTGAGCAATATGGCAA+AGG | 0.590539 | 4_2:+6964413 | None:intergenic |
| GTTCACTTCATCGATTGGAA+CGG | 0.592538 | 4_2:-6963510 | Msa0585840:CDS |
| AACTGCTTTGCATCGTGGTG+AGG | 0.603860 | 4_2:-6962990 | Msa0585840:CDS |
| ATAATATAGTACTCTTGTAG+GGG | 0.610642 | 4_2:-6961576 | Msa0585840:three_prime_UTR |
| CAGTGGCTGAACAATCAGCA+TGG | 0.627131 | 4_2:-6963249 | Msa0585840:CDS |
| CACTTGAAAAGAAAGACCAA+TGG | 0.637319 | 4_2:+6964325 | None:intergenic |
| AGTGGCTGAACAATCAGCAT+GGG | 0.640259 | 4_2:-6963248 | Msa0585840:CDS |
| AACACTTCATCAGTCTCTGG+TGG | 0.644313 | 4_2:-6964220 | Msa0585840:CDS |
| CTTGCATGGGAGGAATAGGA+AGG | 0.645331 | 4_2:+6961629 | None:intergenic |
| AATTGGAAGGAGCAAGAGAG+AGG | 0.645670 | 4_2:-6963830 | Msa0585840:CDS |
| ACACTTACTTGGTAGGAAGT+GGG | 0.647055 | 4_2:+6962933 | None:intergenic |
| AAGCTGTGTGGAACACACCA+TGG | 0.653770 | 4_2:+6963745 | None:intergenic |
| ATGGTCCAAGAACCACAACT+GGG | 0.677277 | 4_2:+6963185 | None:intergenic |
| TGTGAAACTGCTTTGCATCG+TGG | 0.688310 | 4_2:-6962995 | Msa0585840:CDS |
| AGAGCATTGCAAGAACACCA+AGG | 0.704040 | 4_2:-6963426 | Msa0585840:intron |
| CGGTGACAGGAGAAGCTGTG+TGG | 0.708743 | 4_2:+6963733 | None:intergenic |
| GTATTGTTATGGGAAGACAG+TGG | 0.831616 | 4_2:-6963266 | Msa0585840:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAAGAAGAAATAAATTAATT+TGG | + | chr4_2:6961655-6961674 | None:intergenic | 10.0% |
| !! | GTTAAGTTAAATAAATAATT+TGG | - | chr4_2:6961949-6961968 | Msa0585840:intron | 10.0% |
| !!! | TTTTATTTGTATATAATTAG+AGG | - | chr4_2:6962044-6962063 | Msa0585840:intron | 10.0% |
| !!! | TTTTTAAGTTAATTATGTTA+TGG | - | chr4_2:6963031-6963050 | Msa0585840:CDS | 10.0% |
| !! | CATTTAGTTAATTAATATAA+GGG | - | chr4_2:6963632-6963651 | Msa0585840:intron | 10.0% |
| !! | ATTAAGAAAAATTTATTGAT+TGG | - | chr4_2:6963696-6963715 | Msa0585840:intron | 10.0% |
| !!! | TTAAGAAAAATTTATTGATT+GGG | - | chr4_2:6963697-6963716 | Msa0585840:intron | 10.0% |
| !! | AATTATTTATGATATATTCT+TGG | + | chr4_2:6963790-6963809 | None:intergenic | 10.0% |
| !! | AAACAATAAAAAATACTATT+AGG | + | chr4_2:6964484-6964503 | None:intergenic | 10.0% |
| !! | TTATATAAAAATCAAAGACT+TGG | - | chr4_2:6961443-6961462 | Msa0585840:three_prime_UTR | 15.0% |
| !! | TTTGGTATAAGAAAAAAAAA+TGG | + | chr4_2:6961637-6961656 | None:intergenic | 15.0% |
| !! | TGTGAAATTAAATTTACAAA+TGG | + | chr4_2:6962243-6962262 | None:intergenic | 15.0% |
| !! | TTTATAAAGAGTAACTTATA+AGG | - | chr4_2:6962277-6962296 | Msa0585840:intron | 15.0% |
| !! | ATTAAGATTAATTAATTAGG+TGG | - | chr4_2:6962599-6962618 | Msa0585840:intron | 15.0% |
| !! | TGACTTAATTATAAATTCTA+AGG | + | chr4_2:6963463-6963482 | None:intergenic | 15.0% |
| !! | TATTAATTAACTAAATGCTT+AGG | + | chr4_2:6963629-6963648 | None:intergenic | 15.0% |
| !! | GCATTTAGTTAATTAATATA+AGG | - | chr4_2:6963631-6963650 | Msa0585840:intron | 15.0% |
| !!! | AGTATATTAGAACTTTTAAT+TGG | + | chr4_2:6963671-6963690 | None:intergenic | 15.0% |
| !!! | ATATATCATAAATAATTTGC+TGG | - | chr4_2:6963793-6963812 | Msa0585840:CDS | 15.0% |
| !!! | CTTATTTAATCTTTTATTAC+TGG | + | chr4_2:6963866-6963885 | None:intergenic | 15.0% |
| !! | CATAATTTAACAAATACTTT+GGG | - | chr4_2:6964067-6964086 | Msa0585840:intron | 15.0% |
| !! | TAAAAAATACTATTAGGATT+AGG | + | chr4_2:6964478-6964497 | None:intergenic | 15.0% |
| !!! | AATTGTTTTTTACTCGTTTT+TGG | + | chr4_2:6961425-6961444 | None:intergenic | 20.0% |
| !! | ATGTGATAACTCAAATAATA+TGG | + | chr4_2:6961561-6961580 | None:intergenic | 20.0% |
| !! | AAATAATTGCTATGTTTATG+TGG | - | chr4_2:6961887-6961906 | Msa0585840:intron | 20.0% |
| !!! | AAGGTGAATTAATCATTTTA+TGG | - | chr4_2:6962296-6962315 | Msa0585840:intron | 20.0% |
| !!! | CATTTTATGGAACATATAAT+AGG | - | chr4_2:6962309-6962328 | Msa0585840:intron | 20.0% |
| !!! | AAAAGAAAATCAAGTTGATT+TGG | - | chr4_2:6962703-6962722 | Msa0585840:intron | 20.0% |
| !!! | ACTTTTGATCTCAAAATTTT+GGG | + | chr4_2:6963226-6963245 | None:intergenic | 20.0% |
| !!! | AAGTCTTAAATTAAGTTGTT+TGG | - | chr4_2:6963242-6963261 | Msa0585840:CDS | 20.0% |
| !!! | AATTATAAATTCTAAGGAGT+AGG | + | chr4_2:6963457-6963476 | None:intergenic | 20.0% |
| !!! | TATTAGAACTTTTAATTGGA+TGG | + | chr4_2:6963667-6963686 | None:intergenic | 20.0% |
| !! | TAGATGAACATATCATATAT+TGG | - | chr4_2:6963752-6963771 | Msa0585840:CDS | 20.0% |
| !! | AGATGAACATATCATATATT+GGG | - | chr4_2:6963753-6963772 | Msa0585840:CDS | 20.0% |
| !! | GCATAATTTAACAAATACTT+TGG | - | chr4_2:6964066-6964085 | Msa0585840:intron | 20.0% |
| !!! | TTTTGATTTGAGAATATGTA+TGG | + | chr4_2:6964191-6964210 | None:intergenic | 20.0% |
| !! | AATGTTTATATGAAACTGTT+AGG | - | chr4_2:6964249-6964268 | Msa0585840:exon | 20.0% |
| !! | TATAATATAGTACTCTTGTA+GGG | - | chr4_2:6964344-6964363 | Msa0585840:five_prime_UTR | 20.0% |
| ! | TATAAAAATCAAAGACTTGG+TGG | - | chr4_2:6961446-6961465 | Msa0585840:three_prime_UTR | 25.0% |
| !! | ACGTTTTCTCAATCTATAAA+AGG | - | chr4_2:6961482-6961501 | Msa0585840:three_prime_UTR | 25.0% |
| ! | GGTATAAGAAAAAAAAATGG+TGG | + | chr4_2:6961634-6961653 | None:intergenic | 25.0% |
| ! | AACATAGAAAATAACTCACA+GGG | + | chr4_2:6962218-6962237 | None:intergenic | 25.0% |
| ! | AAACATAGAAAATAACTCAC+AGG | + | chr4_2:6962219-6962238 | None:intergenic | 25.0% |
| !!! | AATTTTTTTTTGTGCAGAAC+TGG | - | chr4_2:6962633-6962652 | Msa0585840:intron | 25.0% |
| !! | TTAATTGTTGGTTGAAGTAA+TGG | + | chr4_2:6962758-6962777 | None:intergenic | 25.0% |
| ! | ATTGTACTAGCATTAATTGT+TGG | + | chr4_2:6962770-6962789 | None:intergenic | 25.0% |
| ! | ACAATCTTATGTTCATGTTA+AGG | - | chr4_2:6962841-6962860 | Msa0585840:intron | 25.0% |
| ! | CTTATGACTTATCTAGATTA+GGG | - | chr4_2:6963071-6963090 | Msa0585840:CDS | 25.0% |
| !! | CTTTTGATCTCAAAATTTTG+GGG | + | chr4_2:6963225-6963244 | None:intergenic | 25.0% |
| !! | GACTTTTGATCTCAAAATTT+TGG | + | chr4_2:6963227-6963246 | None:intergenic | 25.0% |
| ! | TAGATGTACACATTGAATAA+GGG | + | chr4_2:6963268-6963287 | None:intergenic | 25.0% |
| ! | TTAGATGTACACATTGAATA+AGG | + | chr4_2:6963269-6963288 | None:intergenic | 25.0% |
| !!! | TCGAGTTTTTTTGTTTGTTA+GGG | + | chr4_2:6963364-6963383 | None:intergenic | 25.0% |
| !!! | ATCGAGTTTTTTTGTTTGTT+AGG | + | chr4_2:6963365-6963384 | None:intergenic | 25.0% |
| ! | ATTACATTAAGAGTCAAAGT+TGG | + | chr4_2:6963430-6963449 | None:intergenic | 25.0% |
| !! | ACTTAAGTCAATGATTTTAC+AGG | - | chr4_2:6963503-6963522 | Msa0585840:CDS | 25.0% |
| ! | ATGATATATTCTTGGTTAGT+AGG | + | chr4_2:6963782-6963801 | None:intergenic | 25.0% |
| ! | TTTAAAGAAACATGCACTTA+AGG | + | chr4_2:6963821-6963840 | None:intergenic | 25.0% |
| ! | ATTCATCATAGCAATAGAAA+CGG | + | chr4_2:6963981-6964000 | None:intergenic | 25.0% |
| ! | TTCTATTGCTATGATGAATT+AGG | - | chr4_2:6963982-6964001 | Msa0585840:intron | 25.0% |
| ! | TCTATTGCTATGATGAATTA+GGG | - | chr4_2:6963983-6964002 | Msa0585840:intron | 25.0% |
| !!! | GCTAAAATTTTGAAAGTGAA+AGG | + | chr4_2:6964110-6964129 | None:intergenic | 25.0% |
| ! | CTATAATATAGTACTCTTGT+AGG | - | chr4_2:6964343-6964362 | Msa0585840:five_prime_UTR | 25.0% |
| ! | ATAATATAGTACTCTTGTAG+GGG | - | chr4_2:6964345-6964364 | Msa0585840:five_prime_UTR | 25.0% |
| ! | TTATTCTTTGCTATCTCCAT+TGG | - | chr4_2:6961580-6961599 | Msa0585840:three_prime_UTR | 30.0% |
| ! | TCTTTCAAGTGATCATTCTT+TGG | + | chr4_2:6962072-6962091 | None:intergenic | 30.0% |
| GAATGATCACTTGAAAGAAT+TGG | - | chr4_2:6962074-6962093 | Msa0585840:intron | 30.0% | |
| CATATAATAGGATGAGATGT+TGG | - | chr4_2:6962321-6962340 | Msa0585840:intron | 30.0% | |
| !! | TTGTAGTTGATGAATCGTAT+TGG | - | chr4_2:6962464-6962483 | Msa0585840:intron | 30.0% |
| GTAGTGAATTAATCAAACCT+TGG | + | chr4_2:6962515-6962534 | None:intergenic | 30.0% | |
| ! | TGTTGCATTCACATAAGTTT+TGG | + | chr4_2:6962822-6962841 | None:intergenic | 30.0% |
| TTATGTTCATGTTAAGGATG+TGG | - | chr4_2:6962847-6962866 | Msa0585840:intron | 30.0% | |
| ATATGAAACACTTACTTGGT+AGG | + | chr4_2:6962998-6963017 | None:intergenic | 30.0% | |
| GACTATATGAAACACTTACT+TGG | + | chr4_2:6963002-6963021 | None:intergenic | 30.0% | |
| GCTTATGACTTATCTAGATT+AGG | - | chr4_2:6963070-6963089 | Msa0585840:CDS | 30.0% | |
| GAAAAAAACTTAGTTGAGAG+AGG | + | chr4_2:6963116-6963135 | None:intergenic | 30.0% | |
| TGTACATCTAACTTGATCTT+GGG | - | chr4_2:6963278-6963297 | Msa0585840:intron | 30.0% | |
| !! | TGACTTGTTCATTCTAAACA+GGG | + | chr4_2:6963324-6963343 | None:intergenic | 30.0% |
| !! | TTGACTTGTTCATTCTAAAC+AGG | + | chr4_2:6963325-6963344 | None:intergenic | 30.0% |
| ! | ATTTTACAGGTAAAAACGAG+TGG | - | chr4_2:6963516-6963535 | Msa0585840:CDS | 30.0% |
| ATGACTTCTCCTAAAAATAG+TGG | + | chr4_2:6963571-6963590 | None:intergenic | 30.0% | |
| AGTAAAAGCTAATGAACACA+CGG | - | chr4_2:6963894-6963913 | Msa0585840:intron | 30.0% | |
| TTAAGTGTCTTGCATATATG+AGG | - | chr4_2:6964044-6964063 | Msa0585840:intron | 30.0% | |
| AATATGTATGGTTTCACTCT+TGG | + | chr4_2:6964179-6964198 | None:intergenic | 30.0% | |
| AAATCAAAAGCTGAAAGACT+TGG | - | chr4_2:6964202-6964221 | Msa0585840:CDS | 30.0% | |
| AATCAAAAGCTGAAAGACTT+GGG | - | chr4_2:6964203-6964222 | Msa0585840:CDS | 30.0% | |
| TCATATAAACATTGCTTCAC+AGG | + | chr4_2:6964242-6964261 | None:intergenic | 30.0% | |
| AAGTGACACATTGAGCAATA+TGG | + | chr4_2:6961517-6961536 | None:intergenic | 35.0% | |
| CACTTGAAAAGAAAGACCAA+TGG | + | chr4_2:6961599-6961618 | None:intergenic | 35.0% | |
| ! | GACTGATGAAGTGTTATCAT+AGG | + | chr4_2:6961696-6961715 | None:intergenic | 35.0% |
| AAATTTGCATACCTGGGTTT+CGG | + | chr4_2:6961823-6961842 | None:intergenic | 35.0% | |
| CGTGATAAATTTGCATACCT+GGG | + | chr4_2:6961829-6961848 | None:intergenic | 35.0% | |
| TCGTGATAAATTTGCATACC+TGG | + | chr4_2:6961830-6961849 | None:intergenic | 35.0% | |
| GATCACTTGAAAGAATTGGA+AGG | - | chr4_2:6962078-6962097 | Msa0585840:intron | 35.0% | |
| TCTATCCAATCTGTTGTTCA+TGG | - | chr4_2:6962150-6962169 | Msa0585840:intron | 35.0% | |
| AAAATAACTCACAGGGTTGT+CGG | + | chr4_2:6962211-6962230 | None:intergenic | 35.0% | |
| CAACATCTCTACTCGTATTT+GGG | + | chr4_2:6962447-6962466 | None:intergenic | 35.0% | |
| ACAACATCTCTACTCGTATT+TGG | + | chr4_2:6962448-6962467 | None:intergenic | 35.0% | |
| TGCAGAACTGGTATTGTTAT+GGG | - | chr4_2:6962645-6962664 | Msa0585840:intron | 35.0% | |
| TATGAGACAAATTCTGCTTC+TGG | - | chr4_2:6962890-6962909 | Msa0585840:intron | 35.0% | |
| ! | TGGTGAGGTTGTTGAAATTT+TGG | - | chr4_2:6962946-6962965 | Msa0585840:CDS | 35.0% |
| !! | GAACTCGAGATTTTGTTTAC+AGG | - | chr4_2:6963149-6963168 | Msa0585840:CDS | 35.0% |
| GTGTACATCTAACTTGATCT+TGG | - | chr4_2:6963277-6963296 | Msa0585840:intron | 35.0% | |
| GTACATCTAACTTGATCTTG+GGG | - | chr4_2:6963279-6963298 | Msa0585840:intron | 35.0% | |
| AAACACCAATTGATGCAGAA+AGG | - | chr4_2:6963388-6963407 | Msa0585840:intron | 35.0% | |
| !! | CATTACCAGCCACTATTTTT+AGG | - | chr4_2:6963559-6963578 | Msa0585840:CDS | 35.0% |
| TAATCTATAGTCGCAGAGAT+AGG | + | chr4_2:6963949-6963968 | None:intergenic | 35.0% | |
| !! | TCAAAGACTTGGTGGACATT+AGG | - | chr4_2:6961454-6961473 | Msa0585840:three_prime_UTR | 40.0% |
| CACATTGAGCAATATGGCAA+AGG | + | chr4_2:6961511-6961530 | None:intergenic | 40.0% | |
| GGAAGATAGATGCTTCTTGT+TGG | + | chr4_2:6961540-6961559 | None:intergenic | 40.0% | |
| ! | GATGAAGTGTTATCATAGGC+AGG | + | chr4_2:6961692-6961711 | None:intergenic | 40.0% |
| GATAACACTTCATCAGTCTC+TGG | - | chr4_2:6961698-6961717 | Msa0585840:CDS | 40.0% | |
| !! | TTGGCTTGTCAAACTTCTCT+TGG | - | chr4_2:6961769-6961788 | Msa0585840:intron | 40.0% |
| GTCAAACTTCTCTTGGAAAG+AGG | - | chr4_2:6961776-6961795 | Msa0585840:intron | 40.0% | |
| GAAAGAGGTTACACTGTTAG+AGG | - | chr4_2:6961791-6961810 | Msa0585840:intron | 40.0% | |
| AGAGAGGCTAACTTTGCATA+AGG | - | chr4_2:6962107-6962126 | Msa0585840:intron | 40.0% | |
| TTCTTTGTTCCATTCACTGC+TGG | + | chr4_2:6962349-6962368 | None:intergenic | 40.0% | |
| GTTGTGTTCACTTCATCGAT+TGG | - | chr4_2:6962406-6962425 | Msa0585840:intron | 40.0% | |
| ! | GTTCACTTCATCGATTGGAA+CGG | - | chr4_2:6962411-6962430 | Msa0585840:intron | 40.0% |
| ATCGATTGGAACGGTCTATA+TGG | - | chr4_2:6962420-6962439 | Msa0585840:intron | 40.0% | |
| GTGCAGAACTGGTATTGTTA+TGG | - | chr4_2:6962644-6962663 | Msa0585840:intron | 40.0% | |
| GTATTGTTATGGGAAGACAG+TGG | - | chr4_2:6962655-6962674 | Msa0585840:intron | 40.0% | |
| CACATCCTCAAGTACCTTAA+TGG | - | chr4_2:6962791-6962810 | Msa0585840:intron | 40.0% | |
| !! | AAGTTTTGGCAGCACCATTA+AGG | + | chr4_2:6962808-6962827 | None:intergenic | 40.0% |
| TGGGTACTCAGGAAAATACT+TGG | + | chr4_2:6962972-6962991 | None:intergenic | 40.0% | |
| ACACTTACTTGGTAGGAAGT+GGG | + | chr4_2:6962991-6963010 | None:intergenic | 40.0% | |
| AACACTTACTTGGTAGGAAG+TGG | + | chr4_2:6962992-6963011 | None:intergenic | 40.0% | |
| CTTAGTTGAGAGAGGAGAAT+TGG | + | chr4_2:6963108-6963127 | None:intergenic | 40.0% | |
| ATCTAACTTGATCTTGGGGT+GGG | - | chr4_2:6963283-6963302 | Msa0585840:intron | 40.0% | |
| ACCAATTGATGCAGAAAGGT+GGG | - | chr4_2:6963392-6963411 | Msa0585840:intron | 40.0% | |
| !! | GTCAAAGTTGGTATACCTAG+AGG | + | chr4_2:6963418-6963437 | None:intergenic | 40.0% |
| CTTCTCCTAAAAATAGTGGC+TGG | + | chr4_2:6963567-6963586 | None:intergenic | 40.0% | |
| GTGTGTGACAATACAATGGT+TGG | + | chr4_2:6963596-6963615 | None:intergenic | 40.0% | |
| GTGTGTGTGTGACAATACAA+TGG | + | chr4_2:6963600-6963619 | None:intergenic | 40.0% | |
| ! | ACACACGGTATTTGTTAACG+CGG | - | chr4_2:6963909-6963928 | Msa0585840:intron | 40.0% |
| AAAGCTGAAAGACTTGGGAT+TGG | - | chr4_2:6964208-6964227 | Msa0585840:CDS | 40.0% | |
| GTTAGGAGTCTACAAGAGAA+AGG | - | chr4_2:6964266-6964285 | Msa0585840:five_prime_UTR | 40.0% | |
| TAAGCAGAGTCTTCTTGCAT+GGG | + | chr4_2:6964308-6964327 | None:intergenic | 40.0% | |
| TTAAGCAGAGTCTTCTTGCA+TGG | + | chr4_2:6964309-6964328 | None:intergenic | 40.0% | |
| AACACTTCATCAGTCTCTGG+TGG | - | chr4_2:6961701-6961720 | Msa0585840:CDS | 45.0% | |
| AATTGGAAGGAGCAAGAGAG+AGG | - | chr4_2:6962091-6962110 | Msa0585840:intron | 45.0% | |
| GGCAACCATGAACAACAGAT+TGG | + | chr4_2:6962158-6962177 | None:intergenic | 45.0% | |
| TCTGTTGTTCATGGTTGCCA+TGG | - | chr4_2:6962159-6962178 | Msa0585840:intron | 45.0% | |
| !! | AGAGCATTGCAAGAACACCA+AGG | - | chr4_2:6962495-6962514 | Msa0585840:intron | 45.0% |
| AGTGGCTGAACAATCAGCAT+GGG | - | chr4_2:6962673-6962692 | Msa0585840:intron | 45.0% | |
| ATGGTCCAAGAACCACAACT+GGG | + | chr4_2:6962739-6962758 | None:intergenic | 45.0% | |
| AATGGTCCAAGAACCACAAC+TGG | + | chr4_2:6962740-6962759 | None:intergenic | 45.0% | |
| ! | CAGCACCATTAAGGTACTTG+AGG | + | chr4_2:6962799-6962818 | None:intergenic | 45.0% |
| TGTGAAACTGCTTTGCATCG+TGG | - | chr4_2:6962926-6962945 | Msa0585840:intron | 45.0% | |
| CATCTAACTTGATCTTGGGG+TGG | - | chr4_2:6963282-6963301 | Msa0585840:intron | 45.0% | |
| TCTAACTTGATCTTGGGGTG+GGG | - | chr4_2:6963284-6963303 | Msa0585840:intron | 45.0% | |
| CACCAATTGATGCAGAAAGG+TGG | - | chr4_2:6963391-6963410 | Msa0585840:intron | 45.0% | |
| ! | CGGTATTTGTTAACGCGGTT+TGG | - | chr4_2:6963914-6963933 | Msa0585840:intron | 45.0% |
| GTCGCAGAGATAGGTACAAT+TGG | + | chr4_2:6963940-6963959 | None:intergenic | 45.0% | |
| TCTTCTTGCATGGGAGGAAT+AGG | + | chr4_2:6964299-6964318 | None:intergenic | 45.0% | |
| !! | AATATTAAGATTAATTAATT+AGG | - | chr4_2:6962596-6962615 | Msa0585840:intron | 5.0% |
| !! | AAAAATTAAAATATGATAAA+AGG | + | chr4_2:6964420-6964439 | None:intergenic | 5.0% |
| GACCAAATCGTGTGTGTCAC+CGG | - | chr4_2:6961725-6961744 | Msa0585840:CDS | 50.0% | |
| TTGCATACCTGGGTTTCGGA+CGG | + | chr4_2:6961819-6961838 | None:intergenic | 50.0% | |
| AAGCTGTGTGGAACACACCA+TGG | + | chr4_2:6962179-6962198 | None:intergenic | 50.0% | |
| ATGTTGGAGCCAGCAGTGAA+TGG | - | chr4_2:6962337-6962356 | Msa0585840:intron | 50.0% | |
| CAGTGGCTGAACAATCAGCA+TGG | - | chr4_2:6962672-6962691 | Msa0585840:intron | 50.0% | |
| GGTTGTTGTGAACCCAGTTG+TGG | - | chr4_2:6962724-6962743 | Msa0585840:intron | 50.0% | |
| GTGAACCCAGTTGTGGTTCT+TGG | - | chr4_2:6962731-6962750 | Msa0585840:intron | 50.0% | |
| AACTGCTTTGCATCGTGGTG+AGG | - | chr4_2:6962931-6962950 | Msa0585840:intron | 50.0% | |
| TTGGTAGGAAGTGGGTACTC+AGG | + | chr4_2:6962983-6963002 | None:intergenic | 50.0% | |
| GCCCACCTTTCTGCATCAAT+TGG | + | chr4_2:6963396-6963415 | None:intergenic | 50.0% | |
| CTTGCATGGGAGGAATAGGA+AGG | + | chr4_2:6964295-6964314 | None:intergenic | 50.0% | |
| CACCGGTGACACACACGATT+TGG | + | chr4_2:6961730-6961749 | None:intergenic | 55.0% | |
| !! | CTGGCGGGTTCATAGCTTCT+TGG | - | chr4_2:6961750-6961769 | Msa0585840:CDS | 55.0% |
| AACTTGATCTTGGGGTGGGG+TGG | - | chr4_2:6963287-6963306 | Msa0585840:intron | 55.0% | |
| ACTTGATCTTGGGGTGGGGT+GGG | - | chr4_2:6963288-6963307 | Msa0585840:intron | 55.0% | |
| ATGCAGAAAGGTGGGCCTCT+AGG | - | chr4_2:6963400-6963419 | Msa0585840:intron | 55.0% | |
| GCAGAGTCTTCTTGCATGGG+AGG | + | chr4_2:6964305-6964324 | None:intergenic | 55.0% | |
| ATCGTGTGTGTCACCGGTGC+TGG | - | chr4_2:6961731-6961750 | Msa0585840:CDS | 60.0% | |
| AGCTATGAACCCGCCAGCAC+CGG | + | chr4_2:6961747-6961766 | None:intergenic | 60.0% | |
| AGAGGAACCGTCCGAAACCC+AGG | - | chr4_2:6961809-6961828 | Msa0585840:intron | 60.0% | |
| CGGTGACAGGAGAAGCTGTG+TGG | + | chr4_2:6962191-6962210 | None:intergenic | 60.0% | |
| CTCACAGGGTTGTCGGTGAC+AGG | + | chr4_2:6962204-6962223 | None:intergenic | 60.0% | |
| ! | GTGTGTGTCACCGGTGCTGG+CGG | - | chr4_2:6961734-6961753 | Msa0585840:CDS | 65.0% |
| !! | TGTGTGTCACCGGTGCTGGC+GGG | - | chr4_2:6961735-6961754 | Msa0585840:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_2 | gene | 6961397 | 6964546 | 6961397 | ID=Msa0585840;Name=Msa0585840 |
| chr4_2 | mRNA | 6961397 | 6964546 | 6961397 | ID=Msa0585840-mRNA-1;Parent=Msa0585840;Name=Msa0585840-mRNA-1;_AED=0.25;_eAED=0.25;_QI=289|1|1|1|1|1|5|218|336 |
| chr4_2 | exon | 6961397 | 6961786 | 6961397 | ID=Msa0585840-mRNA-1:exon:1758;Parent=Msa0585840-mRNA-1 |
| chr4_2 | exon | 6962941 | 6963293 | 6962941 | ID=Msa0585840-mRNA-1:exon:1757;Parent=Msa0585840-mRNA-1 |
| chr4_2 | exon | 6963427 | 6963612 | 6963427 | ID=Msa0585840-mRNA-1:exon:1756;Parent=Msa0585840-mRNA-1 |
| chr4_2 | exon | 6963725 | 6963879 | 6963725 | ID=Msa0585840-mRNA-1:exon:1755;Parent=Msa0585840-mRNA-1 |
| chr4_2 | exon | 6964113 | 6964546 | 6964113 | ID=Msa0585840-mRNA-1:exon:1754;Parent=Msa0585840-mRNA-1 |
| chr4_2 | five_prime_UTR | 6964258 | 6964546 | 6964258 | ID=Msa0585840-mRNA-1:five_prime_utr;Parent=Msa0585840-mRNA-1 |
| chr4_2 | CDS | 6964113 | 6964257 | 6964113 | ID=Msa0585840-mRNA-1:cds;Parent=Msa0585840-mRNA-1 |
| chr4_2 | CDS | 6963725 | 6963879 | 6963725 | ID=Msa0585840-mRNA-1:cds;Parent=Msa0585840-mRNA-1 |
| chr4_2 | CDS | 6963427 | 6963612 | 6963427 | ID=Msa0585840-mRNA-1:cds;Parent=Msa0585840-mRNA-1 |
| chr4_2 | CDS | 6962941 | 6963293 | 6962941 | ID=Msa0585840-mRNA-1:cds;Parent=Msa0585840-mRNA-1 |
| chr4_2 | CDS | 6961615 | 6961786 | 6961615 | ID=Msa0585840-mRNA-1:cds;Parent=Msa0585840-mRNA-1 |
| chr4_2 | three_prime_UTR | 6961397 | 6961614 | 6961397 | ID=Msa0585840-mRNA-1:three_prime_utr;Parent=Msa0585840-mRNA-1 |
| Gene Sequence |
| Protein sequence |
