Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0879110 | KEH17161.1 | 78.114 | 297 | 39 | 6 | 62 | 349 | 1 | 280 | 4.47e-152 | 439 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0879110 | sp|Q0IGK1|MBD4L_ARATH | 52.795 | 161 | 63 | 2 | 188 | 348 | 296 | 443 | 6.14e-51 | 178 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0879110 | A0A072TIV9 | 78.114 | 297 | 39 | 6 | 62 | 349 | 1 | 280 | 2.14e-152 | 439 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0662410 | Msa0879110 | 0.859741 | 3.353037e-63 | -8.615850e-47 |
| Msa0484780 | Msa0879110 | 0.808358 | 3.221535e-50 | -8.615850e-47 |
| Msa0879110 | Msa1362750 | 0.893214 | 7.740858e-75 | -8.615850e-47 |
| Msa0879110 | Msa1365560 | 0.919697 | 3.253954e-87 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0879110 | MtrunA17_Chr5g0421951 | 77.441 | 297 | 41 | 6 | 62 | 349 | 1 | 280 | 4.28e-155 | 436 |
| Msa0879110 | MtrunA17_Chr5g0422001 | 72.542 | 295 | 49 | 7 | 62 | 344 | 1 | 275 | 1.25e-138 | 395 |
| Msa0879110 | MtrunA17_Chr6g0461801 | 70.000 | 180 | 27 | 6 | 62 | 227 | 1 | 167 | 1.78e-68 | 214 |
| Msa0879110 | MtrunA17_Chr6g0465351 | 84.375 | 64 | 10 | 0 | 249 | 312 | 4 | 67 | 4.36e-33 | 118 |
| Msa0879110 | MtrunA17_Chr6g0458841 | 47.368 | 95 | 33 | 3 | 114 | 191 | 1 | 95 | 5.57e-13 | 64.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0879110 | AT3G07930.4 | 52.795 | 161 | 63 | 2 | 188 | 348 | 180 | 327 | 4.08e-53 | 178 |
| Msa0879110 | AT3G07930.3 | 52.795 | 161 | 63 | 2 | 188 | 348 | 296 | 443 | 6.24e-52 | 178 |
Find 72 sgRNAs with CRISPR-Local
Find 264 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TAATTAACAATCTGTGTTTA+TGG | 0.125925 | 6_1:+20697543 | None:intergenic |
| CGGTGGTGACAGGAACTTTC+CGG | 0.198965 | 6_1:-20701400 | Msa0879110:CDS |
| CGACCCATTTAGCTCATTTC+CGG | 0.230714 | 6_1:-20701420 | Msa0879110:CDS |
| GGAAAACACTTGATAATAAC+TGG | 0.253853 | 6_1:-20700657 | Msa0879110:CDS |
| CGAGAGTCATTGAAAATCTT+AGG | 0.262380 | 6_1:+20700769 | None:intergenic |
| TCTTCGACTTTATGAAAATA+AGG | 0.265794 | 6_1:+20700925 | None:intergenic |
| ACCACCGGAAATGAGCTAAA+TGG | 0.291173 | 6_1:+20701416 | None:intergenic |
| AACTGGGTGCCTCCACCTTC+TGG | 0.292945 | 6_1:-20700640 | Msa0879110:CDS |
| TTGAAGATTTAGAACAGTTT+AGG | 0.299387 | 6_1:-20700849 | Msa0879110:CDS |
| ATTATAAGCTGAACGAATAT+TGG | 0.337988 | 6_1:-20697587 | Msa0879110:CDS |
| TTGAACAAGAGAGTAAAGTT+AGG | 0.358048 | 6_1:-20700957 | Msa0879110:CDS |
| GAAGAGGTAATAAAGACATT+AGG | 0.362333 | 6_1:-20699218 | Msa0879110:CDS |
| GGGTCGGGTCGGGTCGGAAA+TGG | 0.375145 | 6_1:+20701437 | None:intergenic |
| TGCATACAAGTTTCTGCGTC+TGG | 0.405102 | 6_1:+20699260 | None:intergenic |
| GGAACTTTCCGGTGGTTGTC+AGG | 0.419909 | 6_1:-20701389 | Msa0879110:intron |
| TTCTTAAGGCTGATAGATGC+AGG | 0.429544 | 6_1:-20700693 | Msa0879110:CDS |
| AGCTCATTTCCGGTGGTGAC+AGG | 0.438636 | 6_1:-20701410 | Msa0879110:CDS |
| CATCTATCAGCCTTAAGAAA+AGG | 0.442836 | 6_1:+20700697 | None:intergenic |
| CTGTTGTTACACAGGGAGAA+TGG | 0.458309 | 6_1:-20701067 | Msa0879110:intron |
| CCACCGGAAATGAGCTAAAT+GGG | 0.466466 | 6_1:+20701417 | None:intergenic |
| GAGAGTGATAGTTATATGTA+TGG | 0.469192 | 6_1:-20700572 | Msa0879110:CDS |
| CGCGCGGTGGAATGTGTAAA+GGG | 0.470220 | 6_1:+20701482 | None:intergenic |
| GCGCGCGGTGGAATGTGTAA+AGG | 0.470939 | 6_1:+20701481 | None:intergenic |
| AGAAAATAAATGGGTTTGGT+AGG | 0.475559 | 6_1:-20701554 | None:intergenic |
| CGTGGAAATGATACTCTTGA+AGG | 0.486923 | 6_1:+20700602 | None:intergenic |
| ATGAGCTAAATGGGTCGGGT+CGG | 0.496378 | 6_1:+20701426 | None:intergenic |
| TGAGCTAAATGGGTCGGGTC+GGG | 0.498041 | 6_1:+20701427 | None:intergenic |
| ATTTGAAATTTATCCTCTTG+AGG | 0.502110 | 6_1:-20700392 | Msa0879110:intron |
| TCGTTCAGCTTATAATCCCT+TGG | 0.506473 | 6_1:+20697594 | None:intergenic |
| TGAACAAGAGAGTAAAGTTA+GGG | 0.507219 | 6_1:-20700956 | Msa0879110:CDS |
| CATATAACTATCACTCTCCA+TGG | 0.522838 | 6_1:+20700577 | None:intergenic |
| CTACCTGACCTGACAACCAC+CGG | 0.531393 | 6_1:+20701381 | None:intergenic |
| GGAAATGAGCTAAATGGGTC+GGG | 0.535479 | 6_1:+20701422 | None:intergenic |
| AGTATCATTTCCACGATCCA+TGG | 0.535981 | 6_1:-20700594 | Msa0879110:CDS |
| CTAAATGGGTCGGGTCGGGT+CGG | 0.545218 | 6_1:+20701431 | None:intergenic |
| GTGAGAGAGAGCGCGCGCGG+TGG | 0.554725 | 6_1:+20701469 | None:intergenic |
| GACTGCTGATGGTGGAAGGA+GGG | 0.554805 | 6_1:-20697484 | Msa0879110:three_prime_UTR |
| AAGAAGAGAGGAAATAGAAG+AGG | 0.558019 | 6_1:-20699234 | Msa0879110:CDS |
| CGGAAATGAGCTAAATGGGT+CGG | 0.565493 | 6_1:+20701421 | None:intergenic |
| CGGAAAGTTCCTGTCACCAC+CGG | 0.576423 | 6_1:+20701401 | None:intergenic |
| GATGCAGGGAGGCTTACAAA+AGG | 0.578219 | 6_1:-20700678 | Msa0879110:CDS |
| GTTACTGAACTGCACGGTGT+CGG | 0.579421 | 6_1:-20699125 | Msa0879110:CDS |
| TCTTAAGGCTGATAGATGCA+GGG | 0.581857 | 6_1:-20700692 | Msa0879110:CDS |
| GTCCTAAGCAAGACCTCAAG+AGG | 0.582213 | 6_1:+20700379 | None:intergenic |
| CCCATTTAGCTCATTTCCGG+TGG | 0.582284 | 6_1:-20701417 | Msa0879110:CDS |
| CGTACGCAAACTCATTGTAA+TGG | 0.583055 | 6_1:+20701037 | None:intergenic |
| TTATACACATACTTACTGAA+AGG | 0.584329 | 6_1:+20701006 | None:intergenic |
| GAACGAGACACGACCCTCTG+TGG | 0.587983 | 6_1:+20700883 | None:intergenic |
| GGACTGCTGATGGTGGAAGG+AGG | 0.589673 | 6_1:-20697485 | Msa0879110:three_prime_UTR |
| GTGAATACTTAACTGAGACT+TGG | 0.590610 | 6_1:-20699154 | Msa0879110:CDS |
| GTGGGATGAAGTTGTGCCAA+GGG | 0.598505 | 6_1:-20697610 | Msa0879110:CDS |
| CTATCACTCTCCATGGATCG+TGG | 0.601633 | 6_1:+20700584 | None:intergenic |
| AAATGATACTCTTGAAGGAG+AGG | 0.606210 | 6_1:+20700607 | None:intergenic |
| GGTGGACTGCTGATGGTGGA+AGG | 0.610976 | 6_1:-20697488 | Msa0879110:three_prime_UTR |
| TTTATGGATGTCTTTCGCGA+AGG | 0.621333 | 6_1:+20697559 | None:intergenic |
| TAAAGGTGGACTGCTGATGG+TGG | 0.627702 | 6_1:-20697492 | Msa0879110:three_prime_UTR |
| AGTCGAAGAAGAGTGCAAAG+TGG | 0.629579 | 6_1:-20700911 | Msa0879110:CDS |
| AATTCAAAACCAGAAGGTGG+AGG | 0.629969 | 6_1:+20700631 | None:intergenic |
| AGAGTGAGAGAGAGCGCGCG+CGG | 0.631022 | 6_1:+20701466 | None:intergenic |
| CAAAGTGGAGCATCCACAGA+GGG | 0.632129 | 6_1:-20700896 | Msa0879110:CDS |
| GAGTCATTGAAAATCTTAGG+AGG | 0.634133 | 6_1:+20700772 | None:intergenic |
| ACCGTGCAGTTCAGTAACAT+AGG | 0.643567 | 6_1:+20699130 | None:intergenic |
| AGTGGGATGAAGTTGTGCCA+AGG | 0.644533 | 6_1:-20697611 | Msa0879110:CDS |
| AGAGGTAATTCAAAACCAGA+AGG | 0.645372 | 6_1:+20700625 | None:intergenic |
| GGTAATTCAAAACCAGAAGG+TGG | 0.647679 | 6_1:+20700628 | None:intergenic |
| GCAAAGTGGAGCATCCACAG+AGG | 0.658092 | 6_1:-20700897 | Msa0879110:CDS |
| TTGTATGCAAGTAAGAAGAG+AGG | 0.658799 | 6_1:-20699246 | Msa0879110:CDS |
| TGGTGACAGGAACTTTCCGG+TGG | 0.666404 | 6_1:-20701397 | Msa0879110:CDS |
| GAAAACACTTGATAATAACT+GGG | 0.673694 | 6_1:-20700656 | Msa0879110:CDS |
| ACCTATGTTACTGAACTGCA+CGG | 0.687032 | 6_1:-20699131 | Msa0879110:CDS |
| TAAGGCTGATAGATGCAGGG+AGG | 0.729699 | 6_1:-20700689 | Msa0879110:CDS |
| TGAGAAAGAGAAATGCAATG+TGG | 0.743677 | 6_1:+20701517 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAATAAAAGAATATACTAAA+GGG | - | chr6_1:20699142-20699161 | Msa0879110:CDS | 10.0% |
| !!! | ATAATAAAATCCTTAATTTT+AGG | + | chr6_1:20700404-20700423 | None:intergenic | 10.0% |
| !!! | TCTTTAAATTTTAACTTTTT+AGG | - | chr6_1:20700923-20700942 | Msa0879110:CDS | 10.0% |
| !! | AAAATAGAAAGAAAAACTAA+CGG | + | chr6_1:20697544-20697563 | None:intergenic | 15.0% |
| !! | AACATTAGCATAAAATATAA+GGG | + | chr6_1:20698394-20698413 | None:intergenic | 15.0% |
| !! | AAACATTAGCATAAAATATA+AGG | + | chr6_1:20698395-20698414 | None:intergenic | 15.0% |
| !! | AAAGCTATAATATCATAATA+AGG | + | chr6_1:20698434-20698453 | None:intergenic | 15.0% |
| !! | TAGTAATTTAGAAATAAAGA+AGG | - | chr6_1:20698913-20698932 | Msa0879110:intron | 15.0% |
| !! | AGTAATTTAGAAATAAAGAA+GGG | - | chr6_1:20698914-20698933 | Msa0879110:intron | 15.0% |
| !! | CTAATAAAAGAATATACTAA+AGG | - | chr6_1:20699141-20699160 | Msa0879110:CDS | 15.0% |
| !! | AATAAAAGAATATACTAAAG+GGG | - | chr6_1:20699143-20699162 | Msa0879110:CDS | 15.0% |
| !! | TTTGAGAATATGTTAAATTA+GGG | - | chr6_1:20699427-20699446 | Msa0879110:intron | 15.0% |
| !! | AATAACTAAAAAACACTAAA+GGG | + | chr6_1:20699908-20699927 | None:intergenic | 15.0% |
| !! | AAATAACTAAAAAACACTAA+AGG | + | chr6_1:20699909-20699928 | None:intergenic | 15.0% |
| !! | AATTGATTATAAGAATTTGA+GGG | + | chr6_1:20699964-20699983 | None:intergenic | 15.0% |
| !!! | ATGATATGTATTTCTTTTAA+AGG | - | chr6_1:20701380-20701399 | Msa0879110:intron | 15.0% |
| !!! | AACAATACTTAATTTTGATA+TGG | - | chr6_1:20701520-20701539 | Msa0879110:CDS | 15.0% |
| !! | TATAATATCATAATAAGGTC+AGG | + | chr6_1:20698429-20698448 | None:intergenic | 20.0% |
| !!! | AGTCTTTAAAATAGAGAAAA+AGG | + | chr6_1:20698800-20698819 | None:intergenic | 20.0% |
| !! | GTTTGAGAATATGTTAAATT+AGG | - | chr6_1:20699426-20699445 | Msa0879110:intron | 20.0% |
| !! | AATATGTTAAATTAGGGAAT+TGG | - | chr6_1:20699433-20699452 | Msa0879110:intron | 20.0% |
| !!! | ACTTTTAACAAGTTACTTTT+AGG | - | chr6_1:20699830-20699849 | Msa0879110:intron | 20.0% |
| !! | CAATTGATTATAAGAATTTG+AGG | + | chr6_1:20699965-20699984 | None:intergenic | 20.0% |
| !!! | AAAAAAAAAACCCTTTTTAG+TGG | - | chr6_1:20700038-20700057 | Msa0879110:intron | 20.0% |
| !! | AATCATTCTCTAAATAATCT+TGG | + | chr6_1:20700730-20700749 | None:intergenic | 20.0% |
| !! | AAGATTATTTAGAGAATGAT+TGG | - | chr6_1:20700729-20700748 | Msa0879110:CDS | 20.0% |
| !!! | ACAGTTAGTGTTTTTAAAAA+AGG | + | chr6_1:20701168-20701187 | None:intergenic | 20.0% |
| !!! | TTCTTTACATTGATTAAGAT+TGG | - | chr6_1:20701197-20701216 | Msa0879110:intron | 20.0% |
| !! | TAATTAACAATCTGTGTTTA+TGG | + | chr6_1:20701349-20701368 | None:intergenic | 20.0% |
| !!! | ATATGTATTTCTTTTAAAGG+TGG | - | chr6_1:20701383-20701402 | Msa0879110:intron | 20.0% |
| !!! | AACTATGTAGTTTTGTTTTT+TGG | - | chr6_1:20701430-20701449 | Msa0879110:CDS | 20.0% |
| !!! | TTTTTGGCAAAATACTAATA+TGG | - | chr6_1:20701446-20701465 | Msa0879110:CDS | 20.0% |
| ! | AACTAAAAAAATTACCCAAC+AGG | + | chr6_1:20697787-20697806 | None:intergenic | 25.0% |
| !!! | TTATTTTTCTGTTGTTACAC+AGG | - | chr6_1:20697814-20697833 | Msa0879110:intron | 25.0% |
| !! | TATTTTTCTGTTGTTACACA+GGG | - | chr6_1:20697815-20697834 | Msa0879110:intron | 25.0% |
| ! | TTATACACATACTTACTGAA+AGG | + | chr6_1:20697886-20697905 | None:intergenic | 25.0% |
| ! | TCTTCGACTTTATGAAAATA+AGG | + | chr6_1:20697967-20697986 | None:intergenic | 25.0% |
| !! | TTGAAGATTTAGAACAGTTT+AGG | - | chr6_1:20698040-20698059 | Msa0879110:intron | 25.0% |
| !!! | AAAAGGTTTAGCTTTTCTTT+TGG | + | chr6_1:20698178-20698197 | None:intergenic | 25.0% |
| !! | AAAAGCTAAACCTTTTCTTA+AGG | - | chr6_1:20698182-20698201 | Msa0879110:intron | 25.0% |
| !! | GAAAACACTTGATAATAACT+GGG | - | chr6_1:20698233-20698252 | Msa0879110:intron | 25.0% |
| !! | ATTTGAAATTTATCCTCTTG+AGG | - | chr6_1:20698497-20698516 | Msa0879110:intron | 25.0% |
| ! | GGACATTATGATTAAGAATT+TGG | - | chr6_1:20698529-20698548 | Msa0879110:intron | 25.0% |
| ! | GAATTTATGATAAAGAACAG+TGG | - | chr6_1:20698771-20698790 | Msa0879110:intron | 25.0% |
| !!! | TTAATTTGTTACAGAACTAC+AGG | + | chr6_1:20698885-20698904 | None:intergenic | 25.0% |
| ! | TAAAGAAGGGATAATGTATA+AGG | - | chr6_1:20698927-20698946 | Msa0879110:intron | 25.0% |
| !! | ATTTTCGCAGTAAATATGTT+AGG | - | chr6_1:20698950-20698969 | Msa0879110:intron | 25.0% |
| !!! | TGAACAGTTTTTGAAATTCT+AGG | + | chr6_1:20699014-20699033 | None:intergenic | 25.0% |
| !! | TTTCAAAAACTGTTCAGTTT+TGG | - | chr6_1:20699018-20699037 | Msa0879110:intron | 25.0% |
| !! | AAGTTACACAATTTTTGTTG+AGG | - | chr6_1:20699173-20699192 | Msa0879110:CDS | 25.0% |
| ! | ATGTACCATTTGCAATTTAT+TGG | - | chr6_1:20699305-20699324 | Msa0879110:intron | 25.0% |
| ! | ATAAGAAGCTAACTCAAAAT+AGG | + | chr6_1:20699559-20699578 | None:intergenic | 25.0% |
| ! | AAATAGCATAAACTACTAGA+GGG | + | chr6_1:20699874-20699893 | None:intergenic | 25.0% |
| !! | GTTTATGCTATTTGTAACTT+TGG | - | chr6_1:20699881-20699900 | Msa0879110:intron | 25.0% |
| ! | ATGGAATGTACCTAAAATTA+AGG | - | chr6_1:20700391-20700410 | Msa0879110:intron | 25.0% |
| ! | ATATGGAATGAAGAATTACA+TGG | - | chr6_1:20700493-20700512 | Msa0879110:intron | 25.0% |
| !! | GCTTGAGTTAAATTCAATTT+TGG | + | chr6_1:20701120-20701139 | None:intergenic | 25.0% |
| !!! | TAGTGTTTTTAAAAAAGGCT+TGG | + | chr6_1:20701163-20701182 | None:intergenic | 25.0% |
| !!! | GGTTATCATCTCTTTTAATT+AGG | - | chr6_1:20701218-20701237 | Msa0879110:intron | 25.0% |
| ! | ATTATAAGCTGAACGAATAT+TGG | - | chr6_1:20701302-20701321 | Msa0879110:intron | 25.0% |
| CGTATCAGTGTTTGATAAAT+GGG | + | chr6_1:20697587-20697606 | None:intergenic | 30.0% | |
| TCGTATCAGTGTTTGATAAA+TGG | + | chr6_1:20697588-20697607 | None:intergenic | 30.0% | |
| GTAATTGTTATGTTTGTAGC+TGG | - | chr6_1:20697705-20697724 | Msa0879110:intron | 30.0% | |
| TTGAACAAGAGAGTAAAGTT+AGG | - | chr6_1:20697932-20697951 | Msa0879110:intron | 30.0% | |
| TGAACAAGAGAGTAAAGTTA+GGG | - | chr6_1:20697933-20697952 | Msa0879110:intron | 30.0% | |
| ! | TTCATAGGCTTTTCAACTTT+CGG | + | chr6_1:20698153-20698172 | None:intergenic | 30.0% |
| ! | GCTTTTCTTTTGGATTTCAT+AGG | + | chr6_1:20698168-20698187 | None:intergenic | 30.0% |
| ! | GGAAAACACTTGATAATAAC+TGG | - | chr6_1:20698232-20698251 | Msa0879110:intron | 30.0% |
| GAGAGTGATAGTTATATGTA+TGG | - | chr6_1:20698317-20698336 | Msa0879110:intron | 30.0% | |
| CTATCTAATTCACAGAGATT+AGG | + | chr6_1:20698714-20698733 | None:intergenic | 30.0% | |
| TTGAAATTGAACGTGAATTC+TGG | - | chr6_1:20698819-20698838 | Msa0879110:intron | 30.0% | |
| ATTAGTGTGTGATCATGTAT+AGG | + | chr6_1:20699126-20699145 | None:intergenic | 30.0% | |
| AAAAGAATATACTAAAGGGG+AGG | - | chr6_1:20699146-20699165 | Msa0879110:CDS | 30.0% | |
| TAATAGAAGCAACAAGAAGA+TGG | + | chr6_1:20699243-20699262 | None:intergenic | 30.0% | |
| TCACTCCAATAAATTGCAAA+TGG | + | chr6_1:20699313-20699332 | None:intergenic | 30.0% | |
| GATTTGAGTAATGTCAAATG+AGG | - | chr6_1:20699393-20699412 | Msa0879110:intron | 30.0% | |
| !!! | CTTCTTATTTTGCAAAATGC+AGG | - | chr6_1:20699571-20699590 | Msa0879110:intron | 30.0% |
| GAAGAGGTAATAAAGACATT+AGG | - | chr6_1:20699671-20699690 | Msa0879110:intron | 30.0% | |
| ! | GAGGGTCTAAAATTGTAATT+TGG | + | chr6_1:20699856-20699875 | None:intergenic | 30.0% |
| CAAATAGCATAAACTACTAG+AGG | + | chr6_1:20699875-20699894 | None:intergenic | 30.0% | |
| !!! | GGGTTTTAAGCAAATGAAAA+GGG | + | chr6_1:20699944-20699963 | None:intergenic | 30.0% |
| !!! | AGGGTTTTAAGCAAATGAAA+AGG | + | chr6_1:20699945-20699964 | None:intergenic | 30.0% |
| ! | AGAAGATGCTTAATGCTTTT+TGG | - | chr6_1:20700061-20700080 | Msa0879110:intron | 30.0% |
| AATGATTCAAACTCAACCAA+GGG | + | chr6_1:20700313-20700332 | None:intergenic | 30.0% | |
| GAGTTTGAATCATTCTAAGT+TGG | - | chr6_1:20700319-20700338 | Msa0879110:intron | 30.0% | |
| !!! | CATCTCTCTCTCTTTATTTT+TGG | - | chr6_1:20700450-20700469 | Msa0879110:intron | 30.0% |
| TACATGGTAAATACATAGTG+AGG | - | chr6_1:20700509-20700528 | Msa0879110:intron | 30.0% | |
| !! | TAAGAATACAGATTTGCTGA+GGG | + | chr6_1:20700624-20700643 | None:intergenic | 30.0% |
| !! | ATAAGAATACAGATTTGCTG+AGG | + | chr6_1:20700625-20700644 | None:intergenic | 30.0% |
| AGCAAATCTGTATTCTTATC+TGG | - | chr6_1:20700626-20700645 | Msa0879110:CDS | 30.0% | |
| ! | TTTAGGTTAAGTTTGTTCAG+AGG | - | chr6_1:20700940-20700959 | Msa0879110:CDS | 30.0% |
| TTTATGTGAAATACAACCGA+TGG | - | chr6_1:20701030-20701049 | Msa0879110:CDS | 30.0% | |
| AATATAGGGACTAAGTTACT+CGG | - | chr6_1:20701079-20701098 | Msa0879110:intron | 30.0% | |
| !! | TAAATTCAATTTTGGTCCCT+CGG | + | chr6_1:20701112-20701131 | None:intergenic | 30.0% |
| !! | TCTTTTAATTAGGTATGCTG+CGG | - | chr6_1:20701228-20701247 | Msa0879110:intron | 30.0% |
| ! | GCATATGCTATATTTTGTAC+AGG | - | chr6_1:20701253-20701272 | Msa0879110:intron | 30.0% |
| ! | TATATTTTGTACAGGCAAGT+GGG | - | chr6_1:20701261-20701280 | Msa0879110:intron | 30.0% |
| TGAGAAAGAGAAATGCAATG+TGG | + | chr6_1:20697375-20697394 | None:intergenic | 35.0% | |
| TCAGTGTTTGATAAATGGGT+CGG | + | chr6_1:20697583-20697602 | None:intergenic | 35.0% | |
| TTCTGATCGAAAACGTGTAT+CGG | + | chr6_1:20697656-20697675 | None:intergenic | 35.0% | |
| ATTACCCAACAGGTAAATAG+AGG | + | chr6_1:20697777-20697796 | None:intergenic | 35.0% | |
| GAGTCATTGAAAATCTTAGG+AGG | + | chr6_1:20698120-20698139 | None:intergenic | 35.0% | |
| CGAGAGTCATTGAAAATCTT+AGG | + | chr6_1:20698123-20698142 | None:intergenic | 35.0% | |
| CATCTATCAGCCTTAAGAAA+AGG | + | chr6_1:20698195-20698214 | None:intergenic | 35.0% | |
| AGAGGTAATTCAAAACCAGA+AGG | + | chr6_1:20698267-20698286 | None:intergenic | 35.0% | |
| AAATGATACTCTTGAAGGAG+AGG | + | chr6_1:20698285-20698304 | None:intergenic | 35.0% | |
| CATATAACTATCACTCTCCA+TGG | + | chr6_1:20698315-20698334 | None:intergenic | 35.0% | |
| !! | TCAAGAGGTTTTAGTAGAGA+AGG | + | chr6_1:20698629-20698648 | None:intergenic | 35.0% |
| AGGTTTGTGAGTAATTCAAG+AGG | + | chr6_1:20698644-20698663 | None:intergenic | 35.0% | |
| TGGCAATGTTGTATATCAAG+AGG | + | chr6_1:20698664-20698683 | None:intergenic | 35.0% | |
| TTCACAGAGATTAGGAGTAA+GGG | + | chr6_1:20698706-20698725 | None:intergenic | 35.0% | |
| ATTCACAGAGATTAGGAGTA+AGG | + | chr6_1:20698707-20698726 | None:intergenic | 35.0% | |
| TTTGTTACAGAACTACAGGA+AGG | + | chr6_1:20698881-20698900 | None:intergenic | 35.0% | |
| !! | TTGAAATTCTAGGCACTGAT+TGG | + | chr6_1:20699004-20699023 | None:intergenic | 35.0% |
| !!! | CTGTTCAGTTTTGGATATAG+TGG | - | chr6_1:20699027-20699046 | Msa0879110:intron | 35.0% |
| GATCATGTATAGGACAGTTA+TGG | + | chr6_1:20699116-20699135 | None:intergenic | 35.0% | |
| ! | TTTGTTGAGGTATGCTTTTG+CGG | - | chr6_1:20699186-20699205 | Msa0879110:CDS | 35.0% |
| TTGAGTAATGTCAAATGAGG+TGG | - | chr6_1:20699396-20699415 | Msa0879110:intron | 35.0% | |
| TTGTATGCAAGTAAGAAGAG+AGG | - | chr6_1:20699643-20699662 | Msa0879110:intron | 35.0% | |
| AAGAAGAGAGGAAATAGAAG+AGG | - | chr6_1:20699655-20699674 | Msa0879110:intron | 35.0% | |
| GTGAATACTTAACTGAGACT+TGG | - | chr6_1:20699735-20699754 | Msa0879110:intron | 35.0% | |
| AGCAAATGAAAAGGGATGAA+GGG | + | chr6_1:20699936-20699955 | None:intergenic | 35.0% | |
| AAGCAAATGAAAAGGGATGA+AGG | + | chr6_1:20699937-20699956 | None:intergenic | 35.0% | |
| AGCATCTTCTCCACTAAAAA+GGG | + | chr6_1:20700051-20700070 | None:intergenic | 35.0% | |
| AAGCATCTTCTCCACTAAAA+AGG | + | chr6_1:20700052-20700071 | None:intergenic | 35.0% | |
| !! | AGATGCTTAATGCTTTTTGG+TGG | - | chr6_1:20700064-20700083 | Msa0879110:intron | 35.0% |
| !! | GATGCTTAATGCTTTTTGGT+GGG | - | chr6_1:20700065-20700084 | Msa0879110:intron | 35.0% |
| !! | ATGCTTAATGCTTTTTGGTG+GGG | - | chr6_1:20700066-20700085 | Msa0879110:intron | 35.0% |
| TTTCGTTGCTAGAATGTTGA+AGG | - | chr6_1:20700242-20700261 | Msa0879110:intron | 35.0% | |
| GAATGATTCAAACTCAACCA+AGG | + | chr6_1:20700314-20700333 | None:intergenic | 35.0% | |
| TCAAATCTTCGTGACATTGT+GGG | + | chr6_1:20700352-20700371 | None:intergenic | 35.0% | |
| ATCAAATCTTCGTGACATTG+TGG | + | chr6_1:20700353-20700372 | None:intergenic | 35.0% | |
| ACAATGTCACGAAGATTTGA+TGG | - | chr6_1:20700352-20700371 | Msa0879110:intron | 35.0% | |
| AGATGTAATAGCTTCAGTCA+TGG | + | chr6_1:20700435-20700454 | None:intergenic | 35.0% | |
| TTTGGAAGATCAAGATGACA+TGG | - | chr6_1:20700468-20700487 | Msa0879110:intron | 35.0% | |
| ATCAAGATGACATGGTGATA+TGG | - | chr6_1:20700476-20700495 | Msa0879110:intron | 35.0% | |
| TGGTAAATACATAGTGAGGT+CGG | - | chr6_1:20700513-20700532 | Msa0879110:intron | 35.0% | |
| GTATTCTTATCTGGCAGATT+TGG | - | chr6_1:20700635-20700654 | Msa0879110:CDS | 35.0% | |
| TTGGAGAAAATGCTTACAGA+TGG | - | chr6_1:20700654-20700673 | Msa0879110:CDS | 35.0% | |
| TGGAGAAAATGCTTACAGAT+GGG | - | chr6_1:20700655-20700674 | Msa0879110:CDS | 35.0% | |
| ACTCAATACTAGTCACACAT+TGG | + | chr6_1:20700766-20700785 | None:intergenic | 35.0% | |
| AAGAAATATGGTCCTACCAT+CGG | + | chr6_1:20701049-20701068 | None:intergenic | 35.0% | |
| !! | AAATTCAATTTTGGTCCCTC+GGG | + | chr6_1:20701111-20701130 | None:intergenic | 35.0% |
| !! | AAAAGGCTTGGTTAGAGTTT+TGG | + | chr6_1:20701151-20701170 | None:intergenic | 35.0% |
| ! | CTATATTTTGTACAGGCAAG+TGG | - | chr6_1:20701260-20701279 | Msa0879110:intron | 35.0% |
| !!! | TGTTGCAGTTTTGTTGTAAG+TGG | - | chr6_1:20701493-20701512 | Msa0879110:CDS | 35.0% |
| CGTACGCAAACTCATTGTAA+TGG | + | chr6_1:20697855-20697874 | None:intergenic | 40.0% | |
| TTCTTAAGGCTGATAGATGC+AGG | - | chr6_1:20698196-20698215 | Msa0879110:intron | 40.0% | |
| TCTTAAGGCTGATAGATGCA+GGG | - | chr6_1:20698197-20698216 | Msa0879110:intron | 40.0% | |
| AATTCAAAACCAGAAGGTGG+AGG | + | chr6_1:20698261-20698280 | None:intergenic | 40.0% | |
| GGTAATTCAAAACCAGAAGG+TGG | + | chr6_1:20698264-20698283 | None:intergenic | 40.0% | |
| CGTGGAAATGATACTCTTGA+AGG | + | chr6_1:20698290-20698309 | None:intergenic | 40.0% | |
| AGTATCATTTCCACGATCCA+TGG | - | chr6_1:20698295-20698314 | Msa0879110:intron | 40.0% | |
| CTGGTCTGCAATATTCTGTT+TGG | - | chr6_1:20698838-20698857 | Msa0879110:intron | 40.0% | |
| TTTAGCAGACTCTTGATACG+CGG | - | chr6_1:20698975-20698994 | Msa0879110:intron | 40.0% | |
| AGGACAGTTATGGTTATGTG+TGG | + | chr6_1:20699106-20699125 | None:intergenic | 40.0% | |
| TCAATGACACGCAAGATGTT+GGG | + | chr6_1:20699470-20699489 | None:intergenic | 40.0% | |
| ACCTATGTTACTGAACTGCA+CGG | - | chr6_1:20699758-20699777 | Msa0879110:intron | 40.0% | |
| ATTGGAGCAAAGGAATTCAG+TGG | - | chr6_1:20700097-20700116 | Msa0879110:intron | 40.0% | |
| TTAGTCATGTTAGCCAAGCA+AGG | - | chr6_1:20700192-20700211 | Msa0879110:intron | 40.0% | |
| TAGTCATGTTAGCCAAGCAA+GGG | - | chr6_1:20700193-20700212 | Msa0879110:intron | 40.0% | |
| CTAGAATGTTGAAGGCGAAA+TGG | - | chr6_1:20700250-20700269 | Msa0879110:intron | 40.0% | |
| TAGGGGATGTATAAAGGTGA+AGG | - | chr6_1:20700277-20700296 | Msa0879110:intron | 40.0% | |
| CAAATCTTCGTGACATTGTG+GGG | + | chr6_1:20700351-20700370 | None:intergenic | 40.0% | |
| ! | ATTTGATGGTTCCTGAAGAG+AGG | - | chr6_1:20700366-20700385 | Msa0879110:intron | 40.0% |
| GGTAAATACATAGTGAGGTC+GGG | - | chr6_1:20700514-20700533 | Msa0879110:intron | 40.0% | |
| AATGCTTACAGATGGGAGAA+AGG | - | chr6_1:20700662-20700681 | Msa0879110:CDS | 40.0% | |
| AATCTTGGTACAACTCACAG+TGG | + | chr6_1:20700715-20700734 | None:intergenic | 40.0% | |
| !! | ATTGAGTGCTAGAGTATTGC+AGG | - | chr6_1:20700779-20700798 | Msa0879110:CDS | 40.0% |
| CTGTGTCAAAATTCTGCAGA+CGG | + | chr6_1:20700826-20700845 | None:intergenic | 40.0% | |
| !! | CTGCAGAATTTTGACACAGT+TGG | - | chr6_1:20700827-20700846 | Msa0879110:CDS | 40.0% |
| TGTGAAATACAACCGATGGT+AGG | - | chr6_1:20701034-20701053 | Msa0879110:CDS | 40.0% | |
| TCGTTCAGCTTATAATCCCT+TGG | + | chr6_1:20701298-20701317 | None:intergenic | 40.0% | |
| TTTATGGATGTCTTTCGCGA+AGG | + | chr6_1:20701333-20701352 | None:intergenic | 40.0% | |
| !!! | TTTTAAAGGTGGACTGCTGA+TGG | - | chr6_1:20701394-20701413 | Msa0879110:CDS | 40.0% |
| GGAAATGAGCTAAATGGGTC+GGG | + | chr6_1:20697470-20697489 | None:intergenic | 45.0% | |
| CGGAAATGAGCTAAATGGGT+CGG | + | chr6_1:20697471-20697490 | None:intergenic | 45.0% | |
| ! | CGACCCATTTAGCTCATTTC+CGG | - | chr6_1:20697469-20697488 | Msa0879110:three_prime_UTR | 45.0% |
| CCACCGGAAATGAGCTAAAT+GGG | + | chr6_1:20697475-20697494 | None:intergenic | 45.0% | |
| ACCACCGGAAATGAGCTAAA+TGG | + | chr6_1:20697476-20697495 | None:intergenic | 45.0% | |
| AATGTCGATGCTACTGAGCT+CGG | - | chr6_1:20697751-20697770 | Msa0879110:intron | 45.0% | |
| TCGGCCTCTATTTACCTGTT+GGG | - | chr6_1:20697770-20697789 | Msa0879110:intron | 45.0% | |
| CTGTTGTTACACAGGGAGAA+TGG | - | chr6_1:20697822-20697841 | Msa0879110:intron | 45.0% | |
| ! | AGTCGAAGAAGAGTGCAAAG+TGG | - | chr6_1:20697978-20697997 | Msa0879110:intron | 45.0% |
| ATCCTCTTGAGGTCTTGCTT+AGG | - | chr6_1:20698508-20698527 | Msa0879110:intron | 45.0% | |
| ! | GCTGGCAAGACTATTTTGTG+TGG | + | chr6_1:20698684-20698703 | None:intergenic | 45.0% |
| TGTCAAATGAGGTGGATGCT+TGG | - | chr6_1:20699404-20699423 | Msa0879110:intron | 45.0% | |
| GTCAATGACACGCAAGATGT+TGG | + | chr6_1:20699471-20699490 | None:intergenic | 45.0% | |
| TGCATACAAGTTTCTGCGTC+TGG | + | chr6_1:20699632-20699651 | None:intergenic | 45.0% | |
| ACCGTGCAGTTCAGTAACAT+AGG | + | chr6_1:20699762-20699781 | None:intergenic | 45.0% | |
| !! | CTTAATGCTTTTTGGTGGGG+AGG | - | chr6_1:20700069-20700088 | Msa0879110:intron | 45.0% |
| GAGCAAAGGAATTCAGTGGT+TGG | - | chr6_1:20700101-20700120 | Msa0879110:intron | 45.0% | |
| !! | AGGAATTCAGTGGTTGGCTT+AGG | - | chr6_1:20700107-20700126 | Msa0879110:intron | 45.0% |
| CCTATCCCTCTCTAAGCTTT+GGG | + | chr6_1:20700147-20700166 | None:intergenic | 45.0% | |
| ACCTATCCCTCTCTAAGCTT+TGG | + | chr6_1:20700148-20700167 | None:intergenic | 45.0% | |
| TAGCATATTCCACCCTTGCT+TGG | + | chr6_1:20700208-20700227 | None:intergenic | 45.0% | |
| GTGGAATATGCTATGCAAGC+TGG | - | chr6_1:20700215-20700234 | Msa0879110:intron | 45.0% | |
| GAATGTTGAAGGCGAAATGG+CGG | - | chr6_1:20700253-20700272 | Msa0879110:intron | 45.0% | |
| ACATTCCATCTCCTCTCTTC+AGG | + | chr6_1:20700380-20700399 | None:intergenic | 45.0% | |
| AGAAGAAACGCTCTGTGCAA+GGG | - | chr6_1:20700569-20700588 | Msa0879110:CDS | 45.0% | |
| !! | ACAGATTTGCTGAGGGACAT+GGG | + | chr6_1:20700617-20700636 | None:intergenic | 45.0% |
| !! | TACAGATTTGCTGAGGGACA+TGG | + | chr6_1:20700618-20700637 | None:intergenic | 45.0% |
| TACAGATGGGAGAAAGGTTG+CGG | - | chr6_1:20700668-20700687 | Msa0879110:CDS | 45.0% | |
| TGGTACAACTCACAGTGGTT+CGG | + | chr6_1:20700710-20700729 | None:intergenic | 45.0% | |
| AGTTACTCGGAAAAAACCCG+AGG | - | chr6_1:20701092-20701111 | Msa0879110:intron | 45.0% | |
| GTTACTCGGAAAAAACCCGA+GGG | - | chr6_1:20701093-20701112 | Msa0879110:intron | 45.0% | |
| !!! | TTTTAAAAATTAAAGAAATA+TGG | + | chr6_1:20701061-20701080 | None:intergenic | 5.0% |
| !!! | TTCTTTAATTTTTAAAATAT+AGG | - | chr6_1:20701064-20701083 | Msa0879110:intron | 5.0% |
| !!! | TCTTTAATTTTTAAAATATA+GGG | - | chr6_1:20701065-20701084 | Msa0879110:intron | 5.0% |
| ATGAGCTAAATGGGTCGGGT+CGG | + | chr6_1:20697466-20697485 | None:intergenic | 50.0% | |
| ! | CCCATTTAGCTCATTTCCGG+TGG | - | chr6_1:20697472-20697491 | Msa0879110:three_prime_UTR | 50.0% |
| !! | GAAAACGTGTATCGGTGTCG+AGG | + | chr6_1:20697648-20697667 | None:intergenic | 50.0% |
| CTCGGCCTCTATTTACCTGT+TGG | - | chr6_1:20697769-20697788 | Msa0879110:intron | 50.0% | |
| ! | CAAAGTGGAGCATCCACAGA+GGG | - | chr6_1:20697993-20698012 | Msa0879110:intron | 50.0% |
| TAAGGCTGATAGATGCAGGG+AGG | - | chr6_1:20698200-20698219 | Msa0879110:intron | 50.0% | |
| GATGCAGGGAGGCTTACAAA+AGG | - | chr6_1:20698211-20698230 | Msa0879110:intron | 50.0% | |
| CTATCACTCTCCATGGATCG+TGG | + | chr6_1:20698308-20698327 | None:intergenic | 50.0% | |
| GTCCTAAGCAAGACCTCAAG+AGG | + | chr6_1:20698513-20698532 | None:intergenic | 50.0% | |
| CAGAGATTAGGAGTAAGGGC+TGG | + | chr6_1:20698702-20698721 | None:intergenic | 50.0% | |
| GTTACTGAACTGCACGGTGT+CGG | - | chr6_1:20699764-20699783 | Msa0879110:intron | 50.0% | |
| !! | AATGCTTTTTGGTGGGGAGG+AGG | - | chr6_1:20700072-20700091 | Msa0879110:intron | 50.0% |
| TTTGGTGGGGAGGAGGTAAT+TGG | - | chr6_1:20700079-20700098 | Msa0879110:intron | 50.0% | |
| GGAGGAGGTAATTGGAGCAA+AGG | - | chr6_1:20700087-20700106 | Msa0879110:intron | 50.0% | |
| TCGTGTCCCAAAGCTTAGAG+AGG | - | chr6_1:20700138-20700157 | Msa0879110:intron | 50.0% | |
| CGTGTCCCAAAGCTTAGAGA+GGG | - | chr6_1:20700139-20700158 | Msa0879110:intron | 50.0% | |
| CCCAAAGCTTAGAGAGGGAT+AGG | - | chr6_1:20700144-20700163 | Msa0879110:intron | 50.0% | |
| TCATGTTAGCCAAGCAAGGG+TGG | - | chr6_1:20700196-20700215 | Msa0879110:intron | 50.0% | |
| !! | TTGAAGGCGAAATGGCGGAT+AGG | - | chr6_1:20700258-20700277 | Msa0879110:intron | 50.0% |
| !! | TGAAGGCGAAATGGCGGATA+GGG | - | chr6_1:20700259-20700278 | Msa0879110:intron | 50.0% |
| GGCGGATAGGGGATGTATAA+AGG | - | chr6_1:20700271-20700290 | Msa0879110:intron | 50.0% | |
| TGAAGGTCATGCAAGACCCT+TGG | - | chr6_1:20700294-20700313 | Msa0879110:intron | 50.0% | |
| TGGTTCCTGAAGAGAGGAGA+TGG | - | chr6_1:20700372-20700391 | Msa0879110:intron | 50.0% | |
| GAGAAGAAACGCTCTGTGCA+AGG | - | chr6_1:20700568-20700587 | Msa0879110:CDS | 50.0% | |
| ACAGATGGGAGAAAGGTTGC+GGG | - | chr6_1:20700669-20700688 | Msa0879110:CDS | 50.0% | |
| CACAGTTGGAGCTGCGTTAT+TGG | - | chr6_1:20700841-20700860 | Msa0879110:CDS | 50.0% | |
| TGTTCAGAGGCAAGCGAACA+TGG | - | chr6_1:20700953-20700972 | Msa0879110:CDS | 50.0% | |
| AGTGGGATGAAGTTGTGCCA+AGG | - | chr6_1:20701278-20701297 | Msa0879110:intron | 50.0% | |
| GTGGGATGAAGTTGTGCCAA+GGG | - | chr6_1:20701279-20701298 | Msa0879110:intron | 50.0% | |
| !! | TAAAGGTGGACTGCTGATGG+TGG | - | chr6_1:20701397-20701416 | Msa0879110:CDS | 50.0% |
| CGCGCGGTGGAATGTGTAAA+GGG | + | chr6_1:20697410-20697429 | None:intergenic | 55.0% | |
| TGAGCTAAATGGGTCGGGTC+GGG | + | chr6_1:20697465-20697484 | None:intergenic | 55.0% | |
| AGCTCATTTCCGGTGGTGAC+AGG | - | chr6_1:20697479-20697498 | Msa0879110:three_prime_UTR | 55.0% | |
| CGGAAAGTTCCTGTCACCAC+CGG | + | chr6_1:20697491-20697510 | None:intergenic | 55.0% | |
| CGGTGGTGACAGGAACTTTC+CGG | - | chr6_1:20697489-20697508 | Msa0879110:three_prime_UTR | 55.0% | |
| TGGTGACAGGAACTTTCCGG+TGG | - | chr6_1:20697492-20697511 | Msa0879110:three_prime_UTR | 55.0% | |
| GGAACTTTCCGGTGGTTGTC+AGG | - | chr6_1:20697500-20697519 | Msa0879110:three_prime_UTR | 55.0% | |
| TTTCCGGTGGTTGTCAGGTC+AGG | - | chr6_1:20697505-20697524 | Msa0879110:three_prime_UTR | 55.0% | |
| CTACCTGACCTGACAACCAC+CGG | + | chr6_1:20697511-20697530 | None:intergenic | 55.0% | |
| ! | GCAAAGTGGAGCATCCACAG+AGG | - | chr6_1:20697992-20698011 | Msa0879110:intron | 55.0% |
| !! | GAAGGCGAAATGGCGGATAG+GGG | - | chr6_1:20700260-20700279 | Msa0879110:intron | 55.0% |
| GCTCTGTGCAAGGGAAGTGA+CGG | - | chr6_1:20700578-20700597 | Msa0879110:CDS | 55.0% | |
| ! | AAGGGAAGTGACGGAGGTTG+TGG | - | chr6_1:20700587-20700606 | Msa0879110:CDS | 55.0% |
| ! | GAAGTGACGGAGGTTGTGGA+AGG | - | chr6_1:20700591-20700610 | Msa0879110:CDS | 55.0% |
| !! | GACTGCTGATGGTGGAAGGA+GGG | - | chr6_1:20701405-20701424 | Msa0879110:CDS | 55.0% |
| GCGCGCGGTGGAATGTGTAA+AGG | + | chr6_1:20697411-20697430 | None:intergenic | 60.0% | |
| CTAAATGGGTCGGGTCGGGT+CGG | + | chr6_1:20697461-20697480 | None:intergenic | 60.0% | |
| GAACGAGACACGACCCTCTG+TGG | + | chr6_1:20698009-20698028 | None:intergenic | 60.0% | |
| AACTGGGTGCCTCCACCTTC+TGG | - | chr6_1:20698249-20698268 | Msa0879110:intron | 60.0% | |
| CTGTGCAAGGGAAGTGACGG+AGG | - | chr6_1:20700581-20700600 | Msa0879110:CDS | 60.0% | |
| !! | GGTGGACTGCTGATGGTGGA+AGG | - | chr6_1:20701401-20701420 | Msa0879110:CDS | 60.0% |
| !! | GGACTGCTGATGGTGGAAGG+AGG | - | chr6_1:20701404-20701423 | Msa0879110:CDS | 60.0% |
| ! | AGAGTGAGAGAGAGCGCGCG+CGG | + | chr6_1:20697426-20697445 | None:intergenic | 65.0% |
| GGGTCGGGTCGGGTCGGAAA+TGG | + | chr6_1:20697455-20697474 | None:intergenic | 70.0% | |
| ! | GTGAGAGAGAGCGCGCGCGG+TGG | + | chr6_1:20697423-20697442 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_1 | gene | 20697344 | 20701567 | 20697344 | ID=Msa0879110;Name=Msa0879110 |
| chr6_1 | mRNA | 20697344 | 20701567 | 20697344 | ID=Msa0879110-mRNA-1;Parent=Msa0879110;Name=Msa0879110-mRNA-1;_AED=0.13;_eAED=0.14;_QI=0|0.5|0.4|0.8|0.5|0.8|5|216|349 |
| chr6_1 | exon | 20697344 | 20697671 | 20697344 | ID=Msa0879110-mRNA-1:exon:5694;Parent=Msa0879110-mRNA-1 |
| chr6_1 | exon | 20699122 | 20699318 | 20699122 | ID=Msa0879110-mRNA-1:exon:5693;Parent=Msa0879110-mRNA-1 |
| chr6_1 | exon | 20700393 | 20700435 | 20700393 | ID=Msa0879110-mRNA-1:exon:5692;Parent=Msa0879110-mRNA-1 |
| chr6_1 | exon | 20700556 | 20701075 | 20700556 | ID=Msa0879110-mRNA-1:exon:5691;Parent=Msa0879110-mRNA-1 |
| chr6_1 | exon | 20701390 | 20701567 | 20701390 | ID=Msa0879110-mRNA-1:exon:5690;Parent=Msa0879110-mRNA-1 |
| chr6_1 | CDS | 20701390 | 20701567 | 20701390 | ID=Msa0879110-mRNA-1:cds;Parent=Msa0879110-mRNA-1 |
| chr6_1 | CDS | 20700556 | 20701075 | 20700556 | ID=Msa0879110-mRNA-1:cds;Parent=Msa0879110-mRNA-1 |
| chr6_1 | CDS | 20700393 | 20700435 | 20700393 | ID=Msa0879110-mRNA-1:cds;Parent=Msa0879110-mRNA-1 |
| chr6_1 | CDS | 20699122 | 20699318 | 20699122 | ID=Msa0879110-mRNA-1:cds;Parent=Msa0879110-mRNA-1 |
| chr6_1 | CDS | 20697560 | 20697671 | 20697560 | ID=Msa0879110-mRNA-1:cds;Parent=Msa0879110-mRNA-1 |
| chr6_1 | three_prime_UTR | 20697344 | 20697559 | 20697344 | ID=Msa0879110-mRNA-1:three_prime_utr;Parent=Msa0879110-mRNA-1 |
| Gene Sequence |
| Protein sequence |
