Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0879500 | XP_013469988.2 | 90.265 | 339 | 26 | 2 | 1 | 332 | 1 | 339 | 0.0 | 629 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0879500 | sp|O82368|Y2988_ARATH | 33.533 | 334 | 185 | 8 | 1 | 326 | 1 | 305 | 3.85e-52 | 177 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0879500 | A0A396JV61 | 90.265 | 339 | 26 | 2 | 1 | 332 | 1 | 339 | 0.0 | 629 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0379940 | Msa0879500 | 0.810403 | 1.173073e-50 | -8.615850e-47 |
| Msa0359370 | Msa0879500 | 0.805903 | 1.066005e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0879500 | MtrunA17_Chr1g0207381 | 90.265 | 339 | 26 | 2 | 1 | 332 | 1 | 339 | 0.0 | 629 |
| Msa0879500 | MtrunA17_Chr4g0051721 | 88.601 | 193 | 22 | 0 | 1 | 193 | 1 | 193 | 3.12e-127 | 362 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0879500 | AT5G27260.1 | 35.347 | 331 | 177 | 8 | 1 | 326 | 1 | 299 | 5.66e-54 | 179 |
| Msa0879500 | AT2G29880.1 | 33.533 | 334 | 185 | 8 | 1 | 326 | 1 | 305 | 3.91e-53 | 177 |
| Msa0879500 | AT1G30140.2 | 32.743 | 226 | 138 | 5 | 12 | 233 | 7 | 222 | 1.05e-29 | 113 |
| Msa0879500 | AT1G30140.1 | 32.743 | 226 | 138 | 5 | 12 | 233 | 7 | 222 | 1.05e-29 | 113 |
Find 61 sgRNAs with CRISPR-Local
Find 170 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GAGAGCTGAAGAATAATATT+TGG | 0.182385 | 6_1:+22021221 | Msa0879500:CDS |
| ATGCGTAACAACTCTGGTTT+TGG | 0.286642 | 6_1:+22020580 | Msa0879500:CDS |
| TCTTGGATAAAATTCAAGTT+AGG | 0.293845 | 6_1:+22021361 | Msa0879500:CDS |
| ATCCAAGACAAGCGGTCTTC+CGG | 0.344544 | 6_1:-22021346 | None:intergenic |
| TACGGTGGTTCATAATTATC+TGG | 0.363509 | 6_1:-22020962 | None:intergenic |
| GAGCAAGAAAGTGAAAGTTT+TGG | 0.364343 | 6_1:+22020893 | Msa0879500:CDS |
| AGTATGGAGTAATTACTTAA+AGG | 0.368835 | 6_1:+22020642 | Msa0879500:CDS |
| TCCGAGTACGAAAGGAGTTC+TGG | 0.386489 | 6_1:+22021082 | Msa0879500:CDS |
| TGTTATGAATGCATCACTAT+TGG | 0.396208 | 6_1:-22020939 | None:intergenic |
| TGAGTTGTTGTTCCTCTTGG+TGG | 0.396694 | 6_1:+22020387 | Msa0879500:CDS |
| AGAGCTGAAGAATAATATTT+GGG | 0.396765 | 6_1:+22021222 | Msa0879500:CDS |
| GAGTTCTAAACCACTTCATT+CGG | 0.405087 | 6_1:-22020534 | None:intergenic |
| TGTCTAACATGATGGAGAAA+AGG | 0.423057 | 6_1:+22021188 | Msa0879500:CDS |
| CTTGGATAAAATTCAAGTTA+GGG | 0.424184 | 6_1:+22021362 | Msa0879500:CDS |
| AAAACCTTTCTTCTAGCATT+GGG | 0.433936 | 6_1:+22021140 | Msa0879500:CDS |
| GATTATTTGAAGATTCTTGT+TGG | 0.439501 | 6_1:+22020803 | Msa0879500:CDS |
| GAAAACCTTTCTTCTAGCAT+TGG | 0.440421 | 6_1:+22021139 | Msa0879500:CDS |
| TTGAAGATTCTTGTTGGAGG+TGG | 0.445118 | 6_1:+22020809 | Msa0879500:CDS |
| CACCGGAAGACCGCTTGTCT+TGG | 0.445291 | 6_1:+22021344 | Msa0879500:CDS |
| GTTGGTTAGGTGATGGAGGT+TGG | 0.445510 | 6_1:-22020985 | None:intergenic |
| ACACGGCTACTGAAGAAGTA+TGG | 0.447236 | 6_1:+22020626 | Msa0879500:CDS |
| TAATGAGTTGTTGTTCCTCT+TGG | 0.447268 | 6_1:+22020384 | Msa0879500:CDS |
| GTCTAACATGATGGAGAAAA+GGG | 0.452368 | 6_1:+22021189 | Msa0879500:CDS |
| AAAGGAGTTCTGGTGTTGTT+GGG | 0.456514 | 6_1:+22021092 | Msa0879500:CDS |
| TCACAACAAGAAAATAATAG+AGG | 0.460305 | 6_1:+22020313 | Msa0879500:CDS |
| GTTATGAATGCATCACTATT+GGG | 0.463450 | 6_1:-22020938 | None:intergenic |
| GAAAGGAGTTCTGGTGTTGT+TGG | 0.477113 | 6_1:+22021091 | Msa0879500:CDS |
| AATGAAGTCAAAAGCAGATA+AGG | 0.479350 | 6_1:+22021303 | Msa0879500:CDS |
| GATGGTGGAGTAGGTTGGTT+AGG | 0.483841 | 6_1:-22020998 | None:intergenic |
| ACCAGAACTCCTTTCGTACT+CGG | 0.488981 | 6_1:-22021083 | None:intergenic |
| ACGTTTATGCGTAACAACTC+TGG | 0.489769 | 6_1:+22020574 | Msa0879500:CDS |
| TTAGGTGATGGAGGTTGGTA+CGG | 0.489944 | 6_1:-22020980 | None:intergenic |
| TTGGAGGTGGAGTGTCTAGC+AGG | 0.490953 | 6_1:+22020822 | Msa0879500:CDS |
| GTTGTTGGGATCAGCAATCA+AGG | 0.494076 | 6_1:+22021106 | Msa0879500:CDS |
| CATGATGGAGAAAAGGGAAA+AGG | 0.499421 | 6_1:+22021195 | Msa0879500:CDS |
| CAGCAATCAAGGACCTGCTA+TGG | 0.512301 | 6_1:+22021117 | Msa0879500:CDS |
| GTAGGTTGGTTAGGTGATGG+AGG | 0.512588 | 6_1:-22020989 | None:intergenic |
| AAATAATAGAGGGAAGGGTA+AGG | 0.512824 | 6_1:+22020324 | Msa0879500:CDS |
| TTGTTTACTAAGTGAACCAT+TGG | 0.514833 | 6_1:-22020437 | None:intergenic |
| CAACTCATTAGTTTCTTCCA+TGG | 0.518120 | 6_1:-22020371 | None:intergenic |
| GAAATAGATCCGAGTACGAA+AGG | 0.521953 | 6_1:+22021074 | Msa0879500:CDS |
| AATGGGATGGTGGAGTAGGT+TGG | 0.522124 | 6_1:-22021003 | None:intergenic |
| GGAGTAGGTTGGTTAGGTGA+TGG | 0.533493 | 6_1:-22020992 | None:intergenic |
| TAGTCCCAATGCTAGAAGAA+AGG | 0.534948 | 6_1:-22021144 | None:intergenic |
| TTGGTGGATGCTATAAATAG+AGG | 0.536963 | 6_1:+22020403 | Msa0879500:CDS |
| TGAAAAGATGTCTAACATGA+TGG | 0.541827 | 6_1:+22021180 | Msa0879500:CDS |
| CAAGAAAATAATAGAGGGAA+GGG | 0.542379 | 6_1:+22020319 | Msa0879500:CDS |
| ACAAGAAAATAATAGAGGGA+AGG | 0.566433 | 6_1:+22020318 | Msa0879500:CDS |
| ATTACTTGAGCCGAATGAAG+TGG | 0.570458 | 6_1:+22020524 | Msa0879500:CDS |
| TGGCTATGTAGCTTGGACCA+TGG | 0.580657 | 6_1:+22020354 | Msa0879500:CDS |
| CCTCTTCTTGAAGATGTCAC+CGG | 0.587669 | 6_1:+22021327 | Msa0879500:CDS |
| CACAACAAGAAAATAATAGA+GGG | 0.595053 | 6_1:+22020314 | Msa0879500:CDS |
| TATTTGAAGATTCTTGTTGG+AGG | 0.595361 | 6_1:+22020806 | Msa0879500:CDS |
| TGGTGGATGCTATAAATAGA+GGG | 0.599601 | 6_1:+22020404 | Msa0879500:CDS |
| CCGGTGACATCTTCAAGAAG+AGG | 0.599852 | 6_1:-22021327 | None:intergenic |
| TTCTATAGCATTAGACGCTG+AGG | 0.600384 | 6_1:+22020850 | Msa0879500:CDS |
| GGTGATGGAGGTTGGTACGG+TGG | 0.605354 | 6_1:-22020977 | None:intergenic |
| TTGGATAAAATTCAAGTTAG+GGG | 0.624848 | 6_1:+22021363 | Msa0879500:CDS |
| TTCAGTTGCAAAGACTTACA+CGG | 0.635359 | 6_1:+22020609 | Msa0879500:CDS |
| AGAGGGTTACGTGATGCCAA+TGG | 0.638045 | 6_1:+22020421 | Msa0879500:CDS |
| TATTTATAGCATCCACCAAG+AGG | 0.660190 | 6_1:-22020399 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| ! | TCACAACAAGAAAATAATAG+AGG | + | chr6_1:22020313-22020332 | Msa0879500:CDS | 25.0% |
| ! | CACAACAAGAAAATAATAGA+GGG | + | chr6_1:22020314-22020333 | Msa0879500:CDS | 25.0% |
| !!! | AGTTTTTTGTGATACAGTTT+TGG | - | chr6_1:22020497-22020516 | None:intergenic | 25.0% |
| ! | AGTATGGAGTAATTACTTAA+AGG | + | chr6_1:22020642-22020661 | Msa0879500:CDS | 25.0% |
| !!! | AATATTTTTGTGAGATGGAT+GGG | - | chr6_1:22020759-22020778 | None:intergenic | 25.0% |
| ! | GATTATTTGAAGATTCTTGT+TGG | + | chr6_1:22020803-22020822 | Msa0879500:CDS | 25.0% |
| ! | CTCTGAATCTAAAGAAAAAT+GGG | - | chr6_1:22021023-22021042 | None:intergenic | 25.0% |
| ! | AGAGCTGAAGAATAATATTT+GGG | + | chr6_1:22021222-22021241 | Msa0879500:CDS | 25.0% |
| !! | TCTTGGATAAAATTCAAGTT+AGG | + | chr6_1:22021361-22021380 | Msa0879500:CDS | 25.0% |
| !! | CTTGGATAAAATTCAAGTTA+GGG | + | chr6_1:22021362-22021381 | Msa0879500:CDS | 25.0% |
| !! | TTGGATAAAATTCAAGTTAG+GGG | + | chr6_1:22021363-22021382 | Msa0879500:CDS | 25.0% |
| ! | TCACAACAAGAAAATAATAG+AGG | + | chr6_1:22020313-22020332 | Msa0879500:CDS | 25.0% |
| ! | CACAACAAGAAAATAATAGA+GGG | + | chr6_1:22020314-22020333 | Msa0879500:CDS | 25.0% |
| !!! | AGTTTTTTGTGATACAGTTT+TGG | - | chr6_1:22020497-22020516 | None:intergenic | 25.0% |
| ! | AGTATGGAGTAATTACTTAA+AGG | + | chr6_1:22020642-22020661 | Msa0879500:CDS | 25.0% |
| !!! | AATATTTTTGTGAGATGGAT+GGG | - | chr6_1:22020759-22020778 | None:intergenic | 25.0% |
| ! | GATTATTTGAAGATTCTTGT+TGG | + | chr6_1:22020803-22020822 | Msa0879500:CDS | 25.0% |
| ! | CTCTGAATCTAAAGAAAAAT+GGG | - | chr6_1:22021023-22021042 | None:intergenic | 25.0% |
| ! | AGAGCTGAAGAATAATATTT+GGG | + | chr6_1:22021222-22021241 | Msa0879500:CDS | 25.0% |
| !! | TCTTGGATAAAATTCAAGTT+AGG | + | chr6_1:22021361-22021380 | Msa0879500:CDS | 25.0% |
| !! | CTTGGATAAAATTCAAGTTA+GGG | + | chr6_1:22021362-22021381 | Msa0879500:CDS | 25.0% |
| !! | TTGGATAAAATTCAAGTTAG+GGG | + | chr6_1:22021363-22021382 | Msa0879500:CDS | 25.0% |
| ACAAGAAAATAATAGAGGGA+AGG | + | chr6_1:22020318-22020337 | Msa0879500:CDS | 30.0% | |
| CAAGAAAATAATAGAGGGAA+GGG | + | chr6_1:22020319-22020338 | Msa0879500:CDS | 30.0% | |
| TTGTTTACTAAGTGAACCAT+TGG | - | chr6_1:22020440-22020459 | None:intergenic | 30.0% | |
| !! | GAATATTTTTGTGAGATGGA+TGG | - | chr6_1:22020760-22020779 | None:intergenic | 30.0% |
| TATTTGAAGATTCTTGTTGG+AGG | + | chr6_1:22020806-22020825 | Msa0879500:CDS | 30.0% | |
| !!! | AGAAAGTGAAAGTTTTGGAA+TGG | + | chr6_1:22020898-22020917 | Msa0879500:CDS | 30.0% |
| GTTATGAATGCATCACTATT+GGG | - | chr6_1:22020941-22020960 | None:intergenic | 30.0% | |
| TGTTATGAATGCATCACTAT+TGG | - | chr6_1:22020942-22020961 | None:intergenic | 30.0% | |
| GAATCTAAAGAAAAATGGGA+TGG | - | chr6_1:22021019-22021038 | None:intergenic | 30.0% | |
| CCTCTGAATCTAAAGAAAAA+TGG | - | chr6_1:22021024-22021043 | None:intergenic | 30.0% | |
| !! | CCATTTTTCTTTAGATTCAG+AGG | + | chr6_1:22021021-22021040 | Msa0879500:CDS | 30.0% |
| !! | TGACGATTTCGTTTTTCAAT+AGG | - | chr6_1:22021049-22021068 | None:intergenic | 30.0% |
| AAAACCTTTCTTCTAGCATT+GGG | + | chr6_1:22021140-22021159 | Msa0879500:CDS | 30.0% | |
| TGAAAAGATGTCTAACATGA+TGG | + | chr6_1:22021180-22021199 | Msa0879500:CDS | 30.0% | |
| GAGAGCTGAAGAATAATATT+TGG | + | chr6_1:22021221-22021240 | Msa0879500:CDS | 30.0% | |
| !! | CGAGTTTTGTCATCTAAATT+TGG | - | chr6_1:22021265-22021284 | None:intergenic | 30.0% |
| AATGAAGTCAAAAGCAGATA+AGG | + | chr6_1:22021303-22021322 | Msa0879500:CDS | 30.0% | |
| ! | TGAATTTTATCCAAGACAAG+CGG | - | chr6_1:22021357-22021376 | None:intergenic | 30.0% |
| ACAAGAAAATAATAGAGGGA+AGG | + | chr6_1:22020318-22020337 | Msa0879500:CDS | 30.0% | |
| CAAGAAAATAATAGAGGGAA+GGG | + | chr6_1:22020319-22020338 | Msa0879500:CDS | 30.0% | |
| TTGTTTACTAAGTGAACCAT+TGG | - | chr6_1:22020440-22020459 | None:intergenic | 30.0% | |
| !! | GAATATTTTTGTGAGATGGA+TGG | - | chr6_1:22020760-22020779 | None:intergenic | 30.0% |
| TATTTGAAGATTCTTGTTGG+AGG | + | chr6_1:22020806-22020825 | Msa0879500:CDS | 30.0% | |
| !!! | AGAAAGTGAAAGTTTTGGAA+TGG | + | chr6_1:22020898-22020917 | Msa0879500:CDS | 30.0% |
| GTTATGAATGCATCACTATT+GGG | - | chr6_1:22020941-22020960 | None:intergenic | 30.0% | |
| TGTTATGAATGCATCACTAT+TGG | - | chr6_1:22020942-22020961 | None:intergenic | 30.0% | |
| GAATCTAAAGAAAAATGGGA+TGG | - | chr6_1:22021019-22021038 | None:intergenic | 30.0% | |
| CCTCTGAATCTAAAGAAAAA+TGG | - | chr6_1:22021024-22021043 | None:intergenic | 30.0% | |
| !! | CCATTTTTCTTTAGATTCAG+AGG | + | chr6_1:22021021-22021040 | Msa0879500:CDS | 30.0% |
| !! | TGACGATTTCGTTTTTCAAT+AGG | - | chr6_1:22021049-22021068 | None:intergenic | 30.0% |
| AAAACCTTTCTTCTAGCATT+GGG | + | chr6_1:22021140-22021159 | Msa0879500:CDS | 30.0% | |
| TGAAAAGATGTCTAACATGA+TGG | + | chr6_1:22021180-22021199 | Msa0879500:CDS | 30.0% | |
| GAGAGCTGAAGAATAATATT+TGG | + | chr6_1:22021221-22021240 | Msa0879500:CDS | 30.0% | |
| !! | CGAGTTTTGTCATCTAAATT+TGG | - | chr6_1:22021265-22021284 | None:intergenic | 30.0% |
| AATGAAGTCAAAAGCAGATA+AGG | + | chr6_1:22021303-22021322 | Msa0879500:CDS | 30.0% | |
| ! | TGAATTTTATCCAAGACAAG+CGG | - | chr6_1:22021357-22021376 | None:intergenic | 30.0% |
| AAATAATAGAGGGAAGGGTA+AGG | + | chr6_1:22020324-22020343 | Msa0879500:CDS | 35.0% | |
| AAAAAGATGGCTATGTAGCT+TGG | + | chr6_1:22020347-22020366 | Msa0879500:CDS | 35.0% | |
| ! | CAACTCATTAGTTTCTTCCA+TGG | - | chr6_1:22020374-22020393 | None:intergenic | 35.0% |
| ! | TAATGAGTTGTTGTTCCTCT+TGG | + | chr6_1:22020384-22020403 | Msa0879500:CDS | 35.0% |
| TATTTATAGCATCCACCAAG+AGG | - | chr6_1:22020402-22020421 | None:intergenic | 35.0% | |
| ! | TTGGTGGATGCTATAAATAG+AGG | + | chr6_1:22020403-22020422 | Msa0879500:CDS | 35.0% |
| ! | TGGTGGATGCTATAAATAGA+GGG | + | chr6_1:22020404-22020423 | Msa0879500:CDS | 35.0% |
| !! | GAGTTCTAAACCACTTCATT+CGG | - | chr6_1:22020537-22020556 | None:intergenic | 35.0% |
| !!! | TAACAACTCTGGTTTTGGAT+GGG | + | chr6_1:22020585-22020604 | Msa0879500:CDS | 35.0% |
| TTCAGTTGCAAAGACTTACA+CGG | + | chr6_1:22020609-22020628 | Msa0879500:CDS | 35.0% | |
| !! | CCTCGAATATTTTTGTGAGA+TGG | - | chr6_1:22020764-22020783 | None:intergenic | 35.0% |
| CCATCTCACAAAAATATTCG+AGG | + | chr6_1:22020761-22020780 | Msa0879500:CDS | 35.0% | |
| ! | GAGCAAGAAAGTGAAAGTTT+TGG | + | chr6_1:22020893-22020912 | Msa0879500:CDS | 35.0% |
| !!! | AGTGAAAGTTTTGGAATGGA+AGG | + | chr6_1:22020902-22020921 | Msa0879500:CDS | 35.0% |
| !!! | GTGAAAGTTTTGGAATGGAA+GGG | + | chr6_1:22020903-22020922 | Msa0879500:CDS | 35.0% |
| TACGGTGGTTCATAATTATC+TGG | - | chr6_1:22020965-22020984 | None:intergenic | 35.0% | |
| TCTAAAGAAAAATGGGATGG+TGG | - | chr6_1:22021016-22021035 | None:intergenic | 35.0% | |
| GAAAACCTTTCTTCTAGCAT+TGG | + | chr6_1:22021139-22021158 | Msa0879500:CDS | 35.0% | |
| ! | TGTCTAACATGATGGAGAAA+AGG | + | chr6_1:22021188-22021207 | Msa0879500:CDS | 35.0% |
| ! | GTCTAACATGATGGAGAAAA+GGG | + | chr6_1:22021189-22021208 | Msa0879500:CDS | 35.0% |
| AAATAATAGAGGGAAGGGTA+AGG | + | chr6_1:22020324-22020343 | Msa0879500:CDS | 35.0% | |
| AAAAAGATGGCTATGTAGCT+TGG | + | chr6_1:22020347-22020366 | Msa0879500:CDS | 35.0% | |
| ! | CAACTCATTAGTTTCTTCCA+TGG | - | chr6_1:22020374-22020393 | None:intergenic | 35.0% |
| ! | TAATGAGTTGTTGTTCCTCT+TGG | + | chr6_1:22020384-22020403 | Msa0879500:CDS | 35.0% |
| TATTTATAGCATCCACCAAG+AGG | - | chr6_1:22020402-22020421 | None:intergenic | 35.0% | |
| ! | TTGGTGGATGCTATAAATAG+AGG | + | chr6_1:22020403-22020422 | Msa0879500:CDS | 35.0% |
| ! | TGGTGGATGCTATAAATAGA+GGG | + | chr6_1:22020404-22020423 | Msa0879500:CDS | 35.0% |
| !! | GAGTTCTAAACCACTTCATT+CGG | - | chr6_1:22020537-22020556 | None:intergenic | 35.0% |
| !!! | TAACAACTCTGGTTTTGGAT+GGG | + | chr6_1:22020585-22020604 | Msa0879500:CDS | 35.0% |
| TTCAGTTGCAAAGACTTACA+CGG | + | chr6_1:22020609-22020628 | Msa0879500:CDS | 35.0% | |
| !! | CCTCGAATATTTTTGTGAGA+TGG | - | chr6_1:22020764-22020783 | None:intergenic | 35.0% |
| CCATCTCACAAAAATATTCG+AGG | + | chr6_1:22020761-22020780 | Msa0879500:CDS | 35.0% | |
| ! | GAGCAAGAAAGTGAAAGTTT+TGG | + | chr6_1:22020893-22020912 | Msa0879500:CDS | 35.0% |
| !!! | AGTGAAAGTTTTGGAATGGA+AGG | + | chr6_1:22020902-22020921 | Msa0879500:CDS | 35.0% |
| !!! | GTGAAAGTTTTGGAATGGAA+GGG | + | chr6_1:22020903-22020922 | Msa0879500:CDS | 35.0% |
| TACGGTGGTTCATAATTATC+TGG | - | chr6_1:22020965-22020984 | None:intergenic | 35.0% | |
| TCTAAAGAAAAATGGGATGG+TGG | - | chr6_1:22021016-22021035 | None:intergenic | 35.0% | |
| GAAAACCTTTCTTCTAGCAT+TGG | + | chr6_1:22021139-22021158 | Msa0879500:CDS | 35.0% | |
| ! | TGTCTAACATGATGGAGAAA+AGG | + | chr6_1:22021188-22021207 | Msa0879500:CDS | 35.0% |
| ! | GTCTAACATGATGGAGAAAA+GGG | + | chr6_1:22021189-22021208 | Msa0879500:CDS | 35.0% |
| !! | TTTTGGTATTGAGCTGAGGA+AGG | - | chr6_1:22020480-22020499 | None:intergenic | 40.0% |
| !! | ACAGTTTTGGTATTGAGCTG+AGG | - | chr6_1:22020484-22020503 | None:intergenic | 40.0% |
| ATTACTTGAGCCGAATGAAG+TGG | + | chr6_1:22020524-22020543 | Msa0879500:CDS | 40.0% | |
| ACGTTTATGCGTAACAACTC+TGG | + | chr6_1:22020574-22020593 | Msa0879500:CDS | 40.0% | |
| !! | ATGCGTAACAACTCTGGTTT+TGG | + | chr6_1:22020580-22020599 | Msa0879500:CDS | 40.0% |
| !!! | GTAACAACTCTGGTTTTGGA+TGG | + | chr6_1:22020584-22020603 | Msa0879500:CDS | 40.0% |
| TTGAAGATTCTTGTTGGAGG+TGG | + | chr6_1:22020809-22020828 | Msa0879500:CDS | 40.0% | |
| TTCTATAGCATTAGACGCTG+AGG | + | chr6_1:22020850-22020869 | Msa0879500:CDS | 40.0% | |
| GAAATAGATCCGAGTACGAA+AGG | + | chr6_1:22021074-22021093 | Msa0879500:CDS | 40.0% | |
| !! | AAAGGAGTTCTGGTGTTGTT+GGG | + | chr6_1:22021092-22021111 | Msa0879500:CDS | 40.0% |
| ! | GAAGAAAGGTTTTCCATAGC+AGG | - | chr6_1:22021133-22021152 | None:intergenic | 40.0% |
| TAGTCCCAATGCTAGAAGAA+AGG | - | chr6_1:22021147-22021166 | None:intergenic | 40.0% | |
| ! | CATGATGGAGAAAAGGGAAA+AGG | + | chr6_1:22021195-22021214 | Msa0879500:CDS | 40.0% |
| !! | TTTTGGTATTGAGCTGAGGA+AGG | - | chr6_1:22020480-22020499 | None:intergenic | 40.0% |
| !! | ACAGTTTTGGTATTGAGCTG+AGG | - | chr6_1:22020484-22020503 | None:intergenic | 40.0% |
| ATTACTTGAGCCGAATGAAG+TGG | + | chr6_1:22020524-22020543 | Msa0879500:CDS | 40.0% | |
| ACGTTTATGCGTAACAACTC+TGG | + | chr6_1:22020574-22020593 | Msa0879500:CDS | 40.0% | |
| !! | ATGCGTAACAACTCTGGTTT+TGG | + | chr6_1:22020580-22020599 | Msa0879500:CDS | 40.0% |
| !!! | GTAACAACTCTGGTTTTGGA+TGG | + | chr6_1:22020584-22020603 | Msa0879500:CDS | 40.0% |
| TTGAAGATTCTTGTTGGAGG+TGG | + | chr6_1:22020809-22020828 | Msa0879500:CDS | 40.0% | |
| TTCTATAGCATTAGACGCTG+AGG | + | chr6_1:22020850-22020869 | Msa0879500:CDS | 40.0% | |
| GAAATAGATCCGAGTACGAA+AGG | + | chr6_1:22021074-22021093 | Msa0879500:CDS | 40.0% | |
| !! | AAAGGAGTTCTGGTGTTGTT+GGG | + | chr6_1:22021092-22021111 | Msa0879500:CDS | 40.0% |
| ! | GAAGAAAGGTTTTCCATAGC+AGG | - | chr6_1:22021133-22021152 | None:intergenic | 40.0% |
| TAGTCCCAATGCTAGAAGAA+AGG | - | chr6_1:22021147-22021166 | None:intergenic | 40.0% | |
| ! | CATGATGGAGAAAAGGGAAA+AGG | + | chr6_1:22021195-22021214 | Msa0879500:CDS | 40.0% |
| GGGAAGGGTAAGGAAAAAGA+TGG | + | chr6_1:22020334-22020353 | Msa0879500:CDS | 45.0% | |
| ! | TGAGTTGTTGTTCCTCTTGG+TGG | + | chr6_1:22020387-22020406 | Msa0879500:CDS | 45.0% |
| ACACGGCTACTGAAGAAGTA+TGG | + | chr6_1:22020626-22020645 | Msa0879500:CDS | 45.0% | |
| !! | TTAGGTGATGGAGGTTGGTA+CGG | - | chr6_1:22020983-22021002 | None:intergenic | 45.0% |
| !! | GAAAAATGGGATGGTGGAGT+AGG | - | chr6_1:22021010-22021029 | None:intergenic | 45.0% |
| ACCAGAACTCCTTTCGTACT+CGG | - | chr6_1:22021086-22021105 | None:intergenic | 45.0% | |
| !! | GAAAGGAGTTCTGGTGTTGT+TGG | + | chr6_1:22021091-22021110 | Msa0879500:CDS | 45.0% |
| GTTGTTGGGATCAGCAATCA+AGG | + | chr6_1:22021106-22021125 | Msa0879500:CDS | 45.0% | |
| CCTCTTCTTGAAGATGTCAC+CGG | + | chr6_1:22021327-22021346 | Msa0879500:CDS | 45.0% | |
| GGGAAGGGTAAGGAAAAAGA+TGG | + | chr6_1:22020334-22020353 | Msa0879500:CDS | 45.0% | |
| ! | TGAGTTGTTGTTCCTCTTGG+TGG | + | chr6_1:22020387-22020406 | Msa0879500:CDS | 45.0% |
| ACACGGCTACTGAAGAAGTA+TGG | + | chr6_1:22020626-22020645 | Msa0879500:CDS | 45.0% | |
| !! | TTAGGTGATGGAGGTTGGTA+CGG | - | chr6_1:22020983-22021002 | None:intergenic | 45.0% |
| !! | GAAAAATGGGATGGTGGAGT+AGG | - | chr6_1:22021010-22021029 | None:intergenic | 45.0% |
| ACCAGAACTCCTTTCGTACT+CGG | - | chr6_1:22021086-22021105 | None:intergenic | 45.0% | |
| !! | GAAAGGAGTTCTGGTGTTGT+TGG | + | chr6_1:22021091-22021110 | Msa0879500:CDS | 45.0% |
| GTTGTTGGGATCAGCAATCA+AGG | + | chr6_1:22021106-22021125 | Msa0879500:CDS | 45.0% | |
| CCTCTTCTTGAAGATGTCAC+CGG | + | chr6_1:22021327-22021346 | Msa0879500:CDS | 45.0% | |
| TGGCTATGTAGCTTGGACCA+TGG | + | chr6_1:22020354-22020373 | Msa0879500:CDS | 50.0% | |
| AGAGGGTTACGTGATGCCAA+TGG | + | chr6_1:22020421-22020440 | Msa0879500:CDS | 50.0% | |
| !! | GTTGGTTAGGTGATGGAGGT+TGG | - | chr6_1:22020988-22021007 | None:intergenic | 50.0% |
| !! | GTAGGTTGGTTAGGTGATGG+AGG | - | chr6_1:22020992-22021011 | None:intergenic | 50.0% |
| !! | GGAGTAGGTTGGTTAGGTGA+TGG | - | chr6_1:22020995-22021014 | None:intergenic | 50.0% |
| !! | GATGGTGGAGTAGGTTGGTT+AGG | - | chr6_1:22021001-22021020 | None:intergenic | 50.0% |
| !! | AATGGGATGGTGGAGTAGGT+TGG | - | chr6_1:22021006-22021025 | None:intergenic | 50.0% |
| TCCGAGTACGAAAGGAGTTC+TGG | + | chr6_1:22021082-22021101 | Msa0879500:CDS | 50.0% | |
| CAGCAATCAAGGACCTGCTA+TGG | + | chr6_1:22021117-22021136 | Msa0879500:CDS | 50.0% | |
| CCGGTGACATCTTCAAGAAG+AGG | - | chr6_1:22021330-22021349 | None:intergenic | 50.0% | |
| ATCCAAGACAAGCGGTCTTC+CGG | - | chr6_1:22021349-22021368 | None:intergenic | 50.0% | |
| TGGCTATGTAGCTTGGACCA+TGG | + | chr6_1:22020354-22020373 | Msa0879500:CDS | 50.0% | |
| AGAGGGTTACGTGATGCCAA+TGG | + | chr6_1:22020421-22020440 | Msa0879500:CDS | 50.0% | |
| !! | GTTGGTTAGGTGATGGAGGT+TGG | - | chr6_1:22020988-22021007 | None:intergenic | 50.0% |
| !! | GTAGGTTGGTTAGGTGATGG+AGG | - | chr6_1:22020992-22021011 | None:intergenic | 50.0% |
| !! | GGAGTAGGTTGGTTAGGTGA+TGG | - | chr6_1:22020995-22021014 | None:intergenic | 50.0% |
| !! | GATGGTGGAGTAGGTTGGTT+AGG | - | chr6_1:22021001-22021020 | None:intergenic | 50.0% |
| !! | AATGGGATGGTGGAGTAGGT+TGG | - | chr6_1:22021006-22021025 | None:intergenic | 50.0% |
| TCCGAGTACGAAAGGAGTTC+TGG | + | chr6_1:22021082-22021101 | Msa0879500:CDS | 50.0% | |
| CAGCAATCAAGGACCTGCTA+TGG | + | chr6_1:22021117-22021136 | Msa0879500:CDS | 50.0% | |
| CCGGTGACATCTTCAAGAAG+AGG | - | chr6_1:22021330-22021349 | None:intergenic | 50.0% | |
| ATCCAAGACAAGCGGTCTTC+CGG | - | chr6_1:22021349-22021368 | None:intergenic | 50.0% | |
| ! | TTGGAGGTGGAGTGTCTAGC+AGG | + | chr6_1:22020822-22020841 | Msa0879500:CDS | 55.0% |
| ! | TTGGAGGTGGAGTGTCTAGC+AGG | + | chr6_1:22020822-22020841 | Msa0879500:CDS | 55.0% |
| !! | GGTGATGGAGGTTGGTACGG+TGG | - | chr6_1:22020980-22020999 | None:intergenic | 60.0% |
| CACCGGAAGACCGCTTGTCT+TGG | + | chr6_1:22021344-22021363 | Msa0879500:CDS | 60.0% | |
| !! | GGTGATGGAGGTTGGTACGG+TGG | - | chr6_1:22020980-22020999 | None:intergenic | 60.0% |
| CACCGGAAGACCGCTTGTCT+TGG | + | chr6_1:22021344-22021363 | Msa0879500:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_1 | gene | 22020304 | 22021393 | 22020304 | ID=Msa0879500;Name=Msa0879500 |
| chr6_1 | mRNA | 22020304 | 22021393 | 22020304 | ID=Msa0879500-mRNA-1;Parent=Msa0879500;Name=Msa0879500-mRNA-1;_AED=0.00;_eAED=0.00;_QI=0|0|0|1|1|1|2|0|332 |
| chr6_1 | exon | 22020304 | 22020663 | 22020304 | ID=Msa0879500-mRNA-1:exon:5962;Parent=Msa0879500-mRNA-1 |
| chr6_1 | exon | 22020755 | 22021393 | 22020755 | ID=Msa0879500-mRNA-1:exon:5963;Parent=Msa0879500-mRNA-1 |
| chr6_1 | CDS | 22020304 | 22020663 | 22020304 | ID=Msa0879500-mRNA-1:cds;Parent=Msa0879500-mRNA-1 |
| chr6_1 | CDS | 22020755 | 22021393 | 22020755 | ID=Msa0879500-mRNA-1:cds;Parent=Msa0879500-mRNA-1 |
| Gene Sequence |
| Protein sequence |
