Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0379940 | XP_013469988.2 | 90.855 | 339 | 24 | 2 | 1 | 332 | 1 | 339 | 0.0 | 633 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0379940 | sp|O82368|Y2988_ARATH | 34.132 | 334 | 183 | 8 | 1 | 326 | 1 | 305 | 9.70e-54 | 181 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0379940 | A0A396JV61 | 90.855 | 339 | 24 | 2 | 1 | 332 | 1 | 339 | 0.0 | 633 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0006110 | Msa0379940 | 0.800068 | 1.714284e-48 | -8.615850e-47 |
| Msa0131770 | Msa0379940 | 0.801315 | 9.541364e-49 | -8.615850e-47 |
| Msa0188460 | Msa0379940 | 0.809236 | 2.090510e-50 | -8.615850e-47 |
| Msa0379940 | Msa0450000 | 0.813756 | 2.178546e-51 | -8.615850e-47 |
| Msa0379940 | Msa0479340 | 0.806783 | 6.957354e-50 | -8.615850e-47 |
| Msa0379940 | Msa0610800 | 0.801910 | 7.205735e-49 | -8.615850e-47 |
| Msa0379940 | Msa0731940 | 0.805347 | 1.394732e-49 | -8.615850e-47 |
| Msa0379940 | Msa0748970 | 0.830248 | 3.268315e-55 | -8.615850e-47 |
| Msa0379940 | Msa0755180 | 0.806375 | 8.480696e-50 | -8.615850e-47 |
| Msa0379940 | Msa0768290 | 0.822063 | 2.893835e-53 | -8.615850e-47 |
| Msa0379940 | Msa0783160 | 0.813243 | 2.825384e-51 | -8.615850e-47 |
| Msa0379940 | Msa0787600 | 0.814257 | 1.688845e-51 | -8.615850e-47 |
| Msa0379940 | Msa0810220 | 0.810061 | 1.390096e-50 | -8.615850e-47 |
| Msa0379940 | Msa0833290 | 0.816716 | 4.792057e-52 | -8.615850e-47 |
| Msa0379940 | Msa0844490 | 0.818237 | 2.176978e-52 | -8.615850e-47 |
| Msa0379940 | Msa0846210 | 0.800902 | 1.158813e-48 | -8.615850e-47 |
| Msa0379940 | Msa0858980 | 0.805660 | 1.199130e-49 | -8.615850e-47 |
| Msa0379940 | Msa0879500 | 0.810403 | 1.173073e-50 | -8.615850e-47 |
| Msa0379940 | Msa0901070 | 0.825329 | 4.974856e-54 | -8.615850e-47 |
| Msa0379940 | Msa0907260 | 0.803764 | 2.983624e-49 | -8.615850e-47 |
| Msa0379940 | Msa0956270 | 0.800336 | 1.511596e-48 | -8.615850e-47 |
| Msa0379940 | Msa0966750 | 0.812987 | 3.214903e-51 | -8.615850e-47 |
| Msa0379940 | Msa0998690 | 0.811212 | 7.837488e-51 | -8.615850e-47 |
| Msa0379940 | Msa1121200 | 0.807013 | 6.219492e-50 | -8.615850e-47 |
| Msa0379940 | Msa1121480 | 0.834297 | 3.251495e-56 | -8.615850e-47 |
| Msa0379940 | Msa1121490 | 0.849606 | 2.903360e-60 | -8.615850e-47 |
| Msa0379940 | Msa1137570 | 0.802461 | 5.549924e-49 | -8.615850e-47 |
| Msa0379940 | Msa1353470 | 0.811836 | 5.736583e-51 | -8.615850e-47 |
| Msa0270520 | Msa0379940 | 0.815157 | 1.067626e-51 | -8.615850e-47 |
| Msa0290870 | Msa0379940 | 0.808727 | 2.686537e-50 | -8.615850e-47 |
| Msa0321310 | Msa0379940 | 0.825261 | 5.161612e-54 | -8.615850e-47 |
| Msa0342750 | Msa0379940 | 0.813735 | 2.202199e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0379940 | MtrunA17_Chr1g0207381 | 90.855 | 339 | 24 | 2 | 1 | 332 | 1 | 339 | 0.0 | 633 |
| Msa0379940 | MtrunA17_Chr4g0051721 | 89.637 | 193 | 20 | 0 | 1 | 193 | 1 | 193 | 2.78e-128 | 364 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0379940 | AT5G27260.1 | 35.650 | 331 | 176 | 8 | 1 | 326 | 1 | 299 | 3.77e-55 | 182 |
| Msa0379940 | AT2G29880.1 | 34.132 | 334 | 183 | 8 | 1 | 326 | 1 | 305 | 9.86e-55 | 181 |
| Msa0379940 | AT1G30140.2 | 32.743 | 226 | 138 | 5 | 12 | 233 | 7 | 222 | 2.05e-30 | 115 |
| Msa0379940 | AT1G30140.1 | 32.743 | 226 | 138 | 5 | 12 | 233 | 7 | 222 | 2.05e-30 | 115 |
Find 63 sgRNAs with CRISPR-Local
Find 170 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GAGAGCTGAAGAATAATATT+TGG | 0.182385 | 3_1:+81390938 | Msa0379940:CDS |
| ATGCGTAACAACTCTGGTTT+TGG | 0.286642 | 3_1:+81390296 | Msa0379940:CDS |
| TCTTGGATAAAATTCAAGTT+AGG | 0.293845 | 3_1:+81391078 | Msa0379940:CDS |
| TGTTATGAATGCATCACTAT+TGG | 0.308362 | 3_1:-81390656 | None:intergenic |
| ATCCAAGACAAGCGGTCTTC+CGG | 0.344544 | 3_1:-81391063 | None:intergenic |
| GAGCAAGAAAGTGAAAGTTT+TGG | 0.364343 | 3_1:+81390610 | Msa0379940:CDS |
| AGTATGGAGTAATTACTTAA+AGG | 0.368835 | 3_1:+81390358 | Msa0379940:CDS |
| TCCGAGTACGAAAGGAGTTC+TGG | 0.386489 | 3_1:+81390799 | Msa0379940:CDS |
| TGAGTTGTTGTTCCTCTTGG+TGG | 0.396694 | 3_1:+81390103 | Msa0379940:CDS |
| AGAGCTGAAGAATAATATTT+GGG | 0.396765 | 3_1:+81390939 | Msa0379940:CDS |
| GAGTTCTAAACCACTTCATT+CGG | 0.405087 | 3_1:-81390250 | None:intergenic |
| GTTATGAATGCATCACTATT+GGG | 0.409874 | 3_1:-81390655 | None:intergenic |
| TGTCTAACATGATGGAGAAA+AGG | 0.423057 | 3_1:+81390905 | Msa0379940:CDS |
| CTTGGATAAAATTCAAGTTA+GGG | 0.424184 | 3_1:+81391079 | Msa0379940:CDS |
| AAAACCTTTCTTCTAGCATT+GGG | 0.433936 | 3_1:+81390857 | Msa0379940:CDS |
| GATTATTTGAAGATTCTTGT+TGG | 0.439501 | 3_1:+81390520 | Msa0379940:CDS |
| GAAAACCTTTCTTCTAGCAT+TGG | 0.440421 | 3_1:+81390856 | Msa0379940:CDS |
| TTGAAGATTCTTGTTGGAGG+TGG | 0.445118 | 3_1:+81390526 | Msa0379940:CDS |
| CACCGGAAGACCGCTTGTCT+TGG | 0.445291 | 3_1:+81391061 | Msa0379940:CDS |
| GTTGGTTAGGTGATGGAGGT+TGG | 0.445510 | 3_1:-81390702 | None:intergenic |
| ACACGGCTACTGAAGAAGTA+TGG | 0.447236 | 3_1:+81390342 | Msa0379940:CDS |
| TAATGAGTTGTTGTTCCTCT+TGG | 0.447268 | 3_1:+81390100 | Msa0379940:CDS |
| GTCTAACATGATGGAGAAAA+GGG | 0.452368 | 3_1:+81390906 | Msa0379940:CDS |
| AAAGGAGTTCTGGTGTTGTT+GGG | 0.456514 | 3_1:+81390809 | Msa0379940:CDS |
| TCACAACAAGAAAATAATAG+AGG | 0.460305 | 3_1:+81390029 | Msa0379940:CDS |
| GAAAGGAGTTCTGGTGTTGT+TGG | 0.477113 | 3_1:+81390808 | Msa0379940:CDS |
| AATGAAGTCAAAAGCAGATA+AGG | 0.479350 | 3_1:+81391020 | Msa0379940:CDS |
| GATGGTGGAGTAGGTTGGTT+AGG | 0.483841 | 3_1:-81390715 | None:intergenic |
| ACCAGAACTCCTTTCGTACT+CGG | 0.488981 | 3_1:-81390800 | None:intergenic |
| ACGTTTATGCGTAACAACTC+TGG | 0.489769 | 3_1:+81390290 | Msa0379940:CDS |
| TTAGGTGATGGAGGTTGGTA+CGG | 0.489944 | 3_1:-81390697 | None:intergenic |
| GTTGTTGGGATCAGCAATCA+AGG | 0.494076 | 3_1:+81390823 | Msa0379940:CDS |
| CATGATGGAGAAAAGGGAAA+AGG | 0.499421 | 3_1:+81390912 | Msa0379940:CDS |
| ACAAAGATGGCTATGTAGCT+TGG | 0.511243 | 3_1:+81390063 | Msa0379940:CDS |
| CAGCAATCAAGGACCTGCTA+TGG | 0.512301 | 3_1:+81390834 | Msa0379940:CDS |
| GTAGGTTGGTTAGGTGATGG+AGG | 0.512588 | 3_1:-81390706 | None:intergenic |
| AAATAATAGAGGGAAGGGTA+AGG | 0.512824 | 3_1:+81390040 | Msa0379940:CDS |
| TTGTTTACTAAGTGAACCAT+TGG | 0.514833 | 3_1:-81390153 | None:intergenic |
| CAACTCATTAGTTTCTTCCA+TGG | 0.518120 | 3_1:-81390087 | None:intergenic |
| GAAATAGATCCGAGTACGAA+AGG | 0.521953 | 3_1:+81390791 | Msa0379940:CDS |
| AATGGGATGGTGGAGTAGGT+TGG | 0.522124 | 3_1:-81390720 | None:intergenic |
| GGAGTAGGTTGGTTAGGTGA+TGG | 0.533493 | 3_1:-81390709 | None:intergenic |
| TAGTCCCAATGCTAGAAGAA+AGG | 0.534948 | 3_1:-81390861 | None:intergenic |
| TTGGTGGATGCTATAAATAG+AGG | 0.536963 | 3_1:+81390119 | Msa0379940:CDS |
| TGAAAAGATGTCTAACATGA+TGG | 0.541827 | 3_1:+81390897 | Msa0379940:CDS |
| CAAGAAAATAATAGAGGGAA+GGG | 0.542379 | 3_1:+81390035 | Msa0379940:CDS |
| TTGGAGGTGGAGTGTCTAGC+GGG | 0.545573 | 3_1:+81390539 | Msa0379940:CDS |
| ACAAGAAAATAATAGAGGGA+AGG | 0.566433 | 3_1:+81390034 | Msa0379940:CDS |
| ATTACTTGAGCCGAATGAAG+TGG | 0.570458 | 3_1:+81390240 | Msa0379940:CDS |
| TGGCTATGTAGCTTGGACCA+TGG | 0.580657 | 3_1:+81390070 | Msa0379940:CDS |
| CCTCTTCTTGAAGATGTCAC+CGG | 0.587669 | 3_1:+81391044 | Msa0379940:CDS |
| CACAACAAGAAAATAATAGA+GGG | 0.595053 | 3_1:+81390030 | Msa0379940:CDS |
| TATTTGAAGATTCTTGTTGG+AGG | 0.595361 | 3_1:+81390523 | Msa0379940:CDS |
| TGGTGGATGCTATAAATAGA+GGG | 0.599601 | 3_1:+81390120 | Msa0379940:CDS |
| CCGGTGACATCTTCAAGAAG+AGG | 0.599852 | 3_1:-81391044 | None:intergenic |
| TTCTATAGCATTAGACGCTG+AGG | 0.600384 | 3_1:+81390567 | Msa0379940:CDS |
| GGGAAGGGTAAGGACAAAGA+TGG | 0.603944 | 3_1:+81390050 | Msa0379940:CDS |
| GGTGATGGAGGTTGGTACGG+TGG | 0.605354 | 3_1:-81390694 | None:intergenic |
| GTTGGAGGTGGAGTGTCTAG+CGG | 0.610018 | 3_1:+81390538 | Msa0379940:CDS |
| TTGGATAAAATTCAAGTTAG+GGG | 0.624848 | 3_1:+81391080 | Msa0379940:CDS |
| TTCAGTTGCAAAGACTTACA+CGG | 0.635359 | 3_1:+81390325 | Msa0379940:CDS |
| AGAGGGTTACGTGATGCCAA+TGG | 0.638045 | 3_1:+81390137 | Msa0379940:CDS |
| TATTTATAGCATCCACCAAG+AGG | 0.660190 | 3_1:-81390115 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| ! | TCACAACAAGAAAATAATAG+AGG | + | chr3_1:81390029-81390048 | Msa0379940:CDS | 25.0% |
| ! | CACAACAAGAAAATAATAGA+GGG | + | chr3_1:81390030-81390049 | Msa0379940:CDS | 25.0% |
| !!! | AGTTTTTTGTGATTCAGTTT+TGG | - | chr3_1:81390213-81390232 | None:intergenic | 25.0% |
| ! | AGTATGGAGTAATTACTTAA+AGG | + | chr3_1:81390358-81390377 | Msa0379940:CDS | 25.0% |
| !!! | AATATTTTTGTGAGATGGAT+GGG | - | chr3_1:81390476-81390495 | None:intergenic | 25.0% |
| ! | GATTATTTGAAGATTCTTGT+TGG | + | chr3_1:81390520-81390539 | Msa0379940:CDS | 25.0% |
| ! | CTCTGAATCTAAAGAAAAAT+GGG | - | chr3_1:81390740-81390759 | None:intergenic | 25.0% |
| ! | AGAGCTGAAGAATAATATTT+GGG | + | chr3_1:81390939-81390958 | Msa0379940:CDS | 25.0% |
| !! | TCTTGGATAAAATTCAAGTT+AGG | + | chr3_1:81391078-81391097 | Msa0379940:CDS | 25.0% |
| !! | CTTGGATAAAATTCAAGTTA+GGG | + | chr3_1:81391079-81391098 | Msa0379940:CDS | 25.0% |
| !! | TTGGATAAAATTCAAGTTAG+GGG | + | chr3_1:81391080-81391099 | Msa0379940:CDS | 25.0% |
| ! | TCACAACAAGAAAATAATAG+AGG | + | chr3_1:81390029-81390048 | Msa0379940:CDS | 25.0% |
| ! | CACAACAAGAAAATAATAGA+GGG | + | chr3_1:81390030-81390049 | Msa0379940:CDS | 25.0% |
| !!! | AGTTTTTTGTGATTCAGTTT+TGG | - | chr3_1:81390213-81390232 | None:intergenic | 25.0% |
| ! | AGTATGGAGTAATTACTTAA+AGG | + | chr3_1:81390358-81390377 | Msa0379940:CDS | 25.0% |
| !!! | AATATTTTTGTGAGATGGAT+GGG | - | chr3_1:81390476-81390495 | None:intergenic | 25.0% |
| ! | GATTATTTGAAGATTCTTGT+TGG | + | chr3_1:81390520-81390539 | Msa0379940:CDS | 25.0% |
| ! | CTCTGAATCTAAAGAAAAAT+GGG | - | chr3_1:81390740-81390759 | None:intergenic | 25.0% |
| ! | AGAGCTGAAGAATAATATTT+GGG | + | chr3_1:81390939-81390958 | Msa0379940:CDS | 25.0% |
| !! | TCTTGGATAAAATTCAAGTT+AGG | + | chr3_1:81391078-81391097 | Msa0379940:CDS | 25.0% |
| !! | CTTGGATAAAATTCAAGTTA+GGG | + | chr3_1:81391079-81391098 | Msa0379940:CDS | 25.0% |
| !! | TTGGATAAAATTCAAGTTAG+GGG | + | chr3_1:81391080-81391099 | Msa0379940:CDS | 25.0% |
| ACAAGAAAATAATAGAGGGA+AGG | + | chr3_1:81390034-81390053 | Msa0379940:CDS | 30.0% | |
| CAAGAAAATAATAGAGGGAA+GGG | + | chr3_1:81390035-81390054 | Msa0379940:CDS | 30.0% | |
| TTGTTTACTAAGTGAACCAT+TGG | - | chr3_1:81390156-81390175 | None:intergenic | 30.0% | |
| !! | GAATATTTTTGTGAGATGGA+TGG | - | chr3_1:81390477-81390496 | None:intergenic | 30.0% |
| TATTTGAAGATTCTTGTTGG+AGG | + | chr3_1:81390523-81390542 | Msa0379940:CDS | 30.0% | |
| !!! | AGAAAGTGAAAGTTTTGGAA+TGG | + | chr3_1:81390615-81390634 | Msa0379940:CDS | 30.0% |
| GTTATGAATGCATCACTATT+GGG | - | chr3_1:81390658-81390677 | None:intergenic | 30.0% | |
| TGTTATGAATGCATCACTAT+TGG | - | chr3_1:81390659-81390678 | None:intergenic | 30.0% | |
| GAATCTAAAGAAAAATGGGA+TGG | - | chr3_1:81390736-81390755 | None:intergenic | 30.0% | |
| CCTCTGAATCTAAAGAAAAA+TGG | - | chr3_1:81390741-81390760 | None:intergenic | 30.0% | |
| !! | CCATTTTTCTTTAGATTCAG+AGG | + | chr3_1:81390738-81390757 | Msa0379940:CDS | 30.0% |
| !! | TGACGATTTCGTTTTTCAAT+AGG | - | chr3_1:81390766-81390785 | None:intergenic | 30.0% |
| AAAACCTTTCTTCTAGCATT+GGG | + | chr3_1:81390857-81390876 | Msa0379940:CDS | 30.0% | |
| TGAAAAGATGTCTAACATGA+TGG | + | chr3_1:81390897-81390916 | Msa0379940:CDS | 30.0% | |
| GAGAGCTGAAGAATAATATT+TGG | + | chr3_1:81390938-81390957 | Msa0379940:CDS | 30.0% | |
| !! | CGAGTTTTGTCATCTAAATT+TGG | - | chr3_1:81390982-81391001 | None:intergenic | 30.0% |
| AATGAAGTCAAAAGCAGATA+AGG | + | chr3_1:81391020-81391039 | Msa0379940:CDS | 30.0% | |
| ! | TGAATTTTATCCAAGACAAG+CGG | - | chr3_1:81391074-81391093 | None:intergenic | 30.0% |
| ACAAGAAAATAATAGAGGGA+AGG | + | chr3_1:81390034-81390053 | Msa0379940:CDS | 30.0% | |
| CAAGAAAATAATAGAGGGAA+GGG | + | chr3_1:81390035-81390054 | Msa0379940:CDS | 30.0% | |
| TTGTTTACTAAGTGAACCAT+TGG | - | chr3_1:81390156-81390175 | None:intergenic | 30.0% | |
| !! | GAATATTTTTGTGAGATGGA+TGG | - | chr3_1:81390477-81390496 | None:intergenic | 30.0% |
| TATTTGAAGATTCTTGTTGG+AGG | + | chr3_1:81390523-81390542 | Msa0379940:CDS | 30.0% | |
| !!! | AGAAAGTGAAAGTTTTGGAA+TGG | + | chr3_1:81390615-81390634 | Msa0379940:CDS | 30.0% |
| GTTATGAATGCATCACTATT+GGG | - | chr3_1:81390658-81390677 | None:intergenic | 30.0% | |
| TGTTATGAATGCATCACTAT+TGG | - | chr3_1:81390659-81390678 | None:intergenic | 30.0% | |
| GAATCTAAAGAAAAATGGGA+TGG | - | chr3_1:81390736-81390755 | None:intergenic | 30.0% | |
| CCTCTGAATCTAAAGAAAAA+TGG | - | chr3_1:81390741-81390760 | None:intergenic | 30.0% | |
| !! | CCATTTTTCTTTAGATTCAG+AGG | + | chr3_1:81390738-81390757 | Msa0379940:CDS | 30.0% |
| !! | TGACGATTTCGTTTTTCAAT+AGG | - | chr3_1:81390766-81390785 | None:intergenic | 30.0% |
| AAAACCTTTCTTCTAGCATT+GGG | + | chr3_1:81390857-81390876 | Msa0379940:CDS | 30.0% | |
| TGAAAAGATGTCTAACATGA+TGG | + | chr3_1:81390897-81390916 | Msa0379940:CDS | 30.0% | |
| GAGAGCTGAAGAATAATATT+TGG | + | chr3_1:81390938-81390957 | Msa0379940:CDS | 30.0% | |
| !! | CGAGTTTTGTCATCTAAATT+TGG | - | chr3_1:81390982-81391001 | None:intergenic | 30.0% |
| AATGAAGTCAAAAGCAGATA+AGG | + | chr3_1:81391020-81391039 | Msa0379940:CDS | 30.0% | |
| ! | TGAATTTTATCCAAGACAAG+CGG | - | chr3_1:81391074-81391093 | None:intergenic | 30.0% |
| AAATAATAGAGGGAAGGGTA+AGG | + | chr3_1:81390040-81390059 | Msa0379940:CDS | 35.0% | |
| ! | CAACTCATTAGTTTCTTCCA+TGG | - | chr3_1:81390090-81390109 | None:intergenic | 35.0% |
| ! | TAATGAGTTGTTGTTCCTCT+TGG | + | chr3_1:81390100-81390119 | Msa0379940:CDS | 35.0% |
| TATTTATAGCATCCACCAAG+AGG | - | chr3_1:81390118-81390137 | None:intergenic | 35.0% | |
| ! | TTGGTGGATGCTATAAATAG+AGG | + | chr3_1:81390119-81390138 | Msa0379940:CDS | 35.0% |
| ! | TGGTGGATGCTATAAATAGA+GGG | + | chr3_1:81390120-81390139 | Msa0379940:CDS | 35.0% |
| !! | GAGTTCTAAACCACTTCATT+CGG | - | chr3_1:81390253-81390272 | None:intergenic | 35.0% |
| !!! | TAACAACTCTGGTTTTGGAT+GGG | + | chr3_1:81390301-81390320 | Msa0379940:CDS | 35.0% |
| TTCAGTTGCAAAGACTTACA+CGG | + | chr3_1:81390325-81390344 | Msa0379940:CDS | 35.0% | |
| !! | CCTCGAATATTTTTGTGAGA+TGG | - | chr3_1:81390481-81390500 | None:intergenic | 35.0% |
| CCATCTCACAAAAATATTCG+AGG | + | chr3_1:81390478-81390497 | Msa0379940:CDS | 35.0% | |
| ! | GAGCAAGAAAGTGAAAGTTT+TGG | + | chr3_1:81390610-81390629 | Msa0379940:CDS | 35.0% |
| !!! | AGTGAAAGTTTTGGAATGGA+AGG | + | chr3_1:81390619-81390638 | Msa0379940:CDS | 35.0% |
| !!! | GTGAAAGTTTTGGAATGGAA+GGG | + | chr3_1:81390620-81390639 | Msa0379940:CDS | 35.0% |
| TCTAAAGAAAAATGGGATGG+TGG | - | chr3_1:81390733-81390752 | None:intergenic | 35.0% | |
| GAAAACCTTTCTTCTAGCAT+TGG | + | chr3_1:81390856-81390875 | Msa0379940:CDS | 35.0% | |
| ! | TGTCTAACATGATGGAGAAA+AGG | + | chr3_1:81390905-81390924 | Msa0379940:CDS | 35.0% |
| ! | GTCTAACATGATGGAGAAAA+GGG | + | chr3_1:81390906-81390925 | Msa0379940:CDS | 35.0% |
| AAATAATAGAGGGAAGGGTA+AGG | + | chr3_1:81390040-81390059 | Msa0379940:CDS | 35.0% | |
| ! | CAACTCATTAGTTTCTTCCA+TGG | - | chr3_1:81390090-81390109 | None:intergenic | 35.0% |
| ! | TAATGAGTTGTTGTTCCTCT+TGG | + | chr3_1:81390100-81390119 | Msa0379940:CDS | 35.0% |
| TATTTATAGCATCCACCAAG+AGG | - | chr3_1:81390118-81390137 | None:intergenic | 35.0% | |
| ! | TTGGTGGATGCTATAAATAG+AGG | + | chr3_1:81390119-81390138 | Msa0379940:CDS | 35.0% |
| ! | TGGTGGATGCTATAAATAGA+GGG | + | chr3_1:81390120-81390139 | Msa0379940:CDS | 35.0% |
| !! | GAGTTCTAAACCACTTCATT+CGG | - | chr3_1:81390253-81390272 | None:intergenic | 35.0% |
| !!! | TAACAACTCTGGTTTTGGAT+GGG | + | chr3_1:81390301-81390320 | Msa0379940:CDS | 35.0% |
| TTCAGTTGCAAAGACTTACA+CGG | + | chr3_1:81390325-81390344 | Msa0379940:CDS | 35.0% | |
| !! | CCTCGAATATTTTTGTGAGA+TGG | - | chr3_1:81390481-81390500 | None:intergenic | 35.0% |
| CCATCTCACAAAAATATTCG+AGG | + | chr3_1:81390478-81390497 | Msa0379940:CDS | 35.0% | |
| ! | GAGCAAGAAAGTGAAAGTTT+TGG | + | chr3_1:81390610-81390629 | Msa0379940:CDS | 35.0% |
| !!! | AGTGAAAGTTTTGGAATGGA+AGG | + | chr3_1:81390619-81390638 | Msa0379940:CDS | 35.0% |
| !!! | GTGAAAGTTTTGGAATGGAA+GGG | + | chr3_1:81390620-81390639 | Msa0379940:CDS | 35.0% |
| TCTAAAGAAAAATGGGATGG+TGG | - | chr3_1:81390733-81390752 | None:intergenic | 35.0% | |
| GAAAACCTTTCTTCTAGCAT+TGG | + | chr3_1:81390856-81390875 | Msa0379940:CDS | 35.0% | |
| ! | TGTCTAACATGATGGAGAAA+AGG | + | chr3_1:81390905-81390924 | Msa0379940:CDS | 35.0% |
| ! | GTCTAACATGATGGAGAAAA+GGG | + | chr3_1:81390906-81390925 | Msa0379940:CDS | 35.0% |
| ACAAAGATGGCTATGTAGCT+TGG | + | chr3_1:81390063-81390082 | Msa0379940:CDS | 40.0% | |
| !! | TTTTGGTATTGAGCTGAGGA+AGG | - | chr3_1:81390196-81390215 | None:intergenic | 40.0% |
| !! | TCAGTTTTGGTATTGAGCTG+AGG | - | chr3_1:81390200-81390219 | None:intergenic | 40.0% |
| ATTACTTGAGCCGAATGAAG+TGG | + | chr3_1:81390240-81390259 | Msa0379940:CDS | 40.0% | |
| ACGTTTATGCGTAACAACTC+TGG | + | chr3_1:81390290-81390309 | Msa0379940:CDS | 40.0% | |
| !! | ATGCGTAACAACTCTGGTTT+TGG | + | chr3_1:81390296-81390315 | Msa0379940:CDS | 40.0% |
| !!! | GTAACAACTCTGGTTTTGGA+TGG | + | chr3_1:81390300-81390319 | Msa0379940:CDS | 40.0% |
| TTGAAGATTCTTGTTGGAGG+TGG | + | chr3_1:81390526-81390545 | Msa0379940:CDS | 40.0% | |
| TTCTATAGCATTAGACGCTG+AGG | + | chr3_1:81390567-81390586 | Msa0379940:CDS | 40.0% | |
| GAAATAGATCCGAGTACGAA+AGG | + | chr3_1:81390791-81390810 | Msa0379940:CDS | 40.0% | |
| !! | AAAGGAGTTCTGGTGTTGTT+GGG | + | chr3_1:81390809-81390828 | Msa0379940:CDS | 40.0% |
| ! | GAAGAAAGGTTTTCCATAGC+AGG | - | chr3_1:81390850-81390869 | None:intergenic | 40.0% |
| TAGTCCCAATGCTAGAAGAA+AGG | - | chr3_1:81390864-81390883 | None:intergenic | 40.0% | |
| ! | CATGATGGAGAAAAGGGAAA+AGG | + | chr3_1:81390912-81390931 | Msa0379940:CDS | 40.0% |
| ACAAAGATGGCTATGTAGCT+TGG | + | chr3_1:81390063-81390082 | Msa0379940:CDS | 40.0% | |
| !! | TTTTGGTATTGAGCTGAGGA+AGG | - | chr3_1:81390196-81390215 | None:intergenic | 40.0% |
| !! | TCAGTTTTGGTATTGAGCTG+AGG | - | chr3_1:81390200-81390219 | None:intergenic | 40.0% |
| ATTACTTGAGCCGAATGAAG+TGG | + | chr3_1:81390240-81390259 | Msa0379940:CDS | 40.0% | |
| ACGTTTATGCGTAACAACTC+TGG | + | chr3_1:81390290-81390309 | Msa0379940:CDS | 40.0% | |
| !! | ATGCGTAACAACTCTGGTTT+TGG | + | chr3_1:81390296-81390315 | Msa0379940:CDS | 40.0% |
| !!! | GTAACAACTCTGGTTTTGGA+TGG | + | chr3_1:81390300-81390319 | Msa0379940:CDS | 40.0% |
| TTGAAGATTCTTGTTGGAGG+TGG | + | chr3_1:81390526-81390545 | Msa0379940:CDS | 40.0% | |
| TTCTATAGCATTAGACGCTG+AGG | + | chr3_1:81390567-81390586 | Msa0379940:CDS | 40.0% | |
| GAAATAGATCCGAGTACGAA+AGG | + | chr3_1:81390791-81390810 | Msa0379940:CDS | 40.0% | |
| !! | AAAGGAGTTCTGGTGTTGTT+GGG | + | chr3_1:81390809-81390828 | Msa0379940:CDS | 40.0% |
| ! | GAAGAAAGGTTTTCCATAGC+AGG | - | chr3_1:81390850-81390869 | None:intergenic | 40.0% |
| TAGTCCCAATGCTAGAAGAA+AGG | - | chr3_1:81390864-81390883 | None:intergenic | 40.0% | |
| ! | CATGATGGAGAAAAGGGAAA+AGG | + | chr3_1:81390912-81390931 | Msa0379940:CDS | 40.0% |
| ! | TGAGTTGTTGTTCCTCTTGG+TGG | + | chr3_1:81390103-81390122 | Msa0379940:CDS | 45.0% |
| ACACGGCTACTGAAGAAGTA+TGG | + | chr3_1:81390342-81390361 | Msa0379940:CDS | 45.0% | |
| !! | TTAGGTGATGGAGGTTGGTA+CGG | - | chr3_1:81390700-81390719 | None:intergenic | 45.0% |
| !! | GAAAAATGGGATGGTGGAGT+AGG | - | chr3_1:81390727-81390746 | None:intergenic | 45.0% |
| ACCAGAACTCCTTTCGTACT+CGG | - | chr3_1:81390803-81390822 | None:intergenic | 45.0% | |
| !! | GAAAGGAGTTCTGGTGTTGT+TGG | + | chr3_1:81390808-81390827 | Msa0379940:CDS | 45.0% |
| GTTGTTGGGATCAGCAATCA+AGG | + | chr3_1:81390823-81390842 | Msa0379940:CDS | 45.0% | |
| CCTCTTCTTGAAGATGTCAC+CGG | + | chr3_1:81391044-81391063 | Msa0379940:CDS | 45.0% | |
| ! | TGAGTTGTTGTTCCTCTTGG+TGG | + | chr3_1:81390103-81390122 | Msa0379940:CDS | 45.0% |
| ACACGGCTACTGAAGAAGTA+TGG | + | chr3_1:81390342-81390361 | Msa0379940:CDS | 45.0% | |
| !! | TTAGGTGATGGAGGTTGGTA+CGG | - | chr3_1:81390700-81390719 | None:intergenic | 45.0% |
| !! | GAAAAATGGGATGGTGGAGT+AGG | - | chr3_1:81390727-81390746 | None:intergenic | 45.0% |
| ACCAGAACTCCTTTCGTACT+CGG | - | chr3_1:81390803-81390822 | None:intergenic | 45.0% | |
| !! | GAAAGGAGTTCTGGTGTTGT+TGG | + | chr3_1:81390808-81390827 | Msa0379940:CDS | 45.0% |
| GTTGTTGGGATCAGCAATCA+AGG | + | chr3_1:81390823-81390842 | Msa0379940:CDS | 45.0% | |
| CCTCTTCTTGAAGATGTCAC+CGG | + | chr3_1:81391044-81391063 | Msa0379940:CDS | 45.0% | |
| GGGAAGGGTAAGGACAAAGA+TGG | + | chr3_1:81390050-81390069 | Msa0379940:CDS | 50.0% | |
| TGGCTATGTAGCTTGGACCA+TGG | + | chr3_1:81390070-81390089 | Msa0379940:CDS | 50.0% | |
| AGAGGGTTACGTGATGCCAA+TGG | + | chr3_1:81390137-81390156 | Msa0379940:CDS | 50.0% | |
| !! | GTTGGTTAGGTGATGGAGGT+TGG | - | chr3_1:81390705-81390724 | None:intergenic | 50.0% |
| !! | GTAGGTTGGTTAGGTGATGG+AGG | - | chr3_1:81390709-81390728 | None:intergenic | 50.0% |
| !! | GGAGTAGGTTGGTTAGGTGA+TGG | - | chr3_1:81390712-81390731 | None:intergenic | 50.0% |
| !! | GATGGTGGAGTAGGTTGGTT+AGG | - | chr3_1:81390718-81390737 | None:intergenic | 50.0% |
| !! | AATGGGATGGTGGAGTAGGT+TGG | - | chr3_1:81390723-81390742 | None:intergenic | 50.0% |
| TCCGAGTACGAAAGGAGTTC+TGG | + | chr3_1:81390799-81390818 | Msa0379940:CDS | 50.0% | |
| CAGCAATCAAGGACCTGCTA+TGG | + | chr3_1:81390834-81390853 | Msa0379940:CDS | 50.0% | |
| CCGGTGACATCTTCAAGAAG+AGG | - | chr3_1:81391047-81391066 | None:intergenic | 50.0% | |
| ATCCAAGACAAGCGGTCTTC+CGG | - | chr3_1:81391066-81391085 | None:intergenic | 50.0% | |
| GGGAAGGGTAAGGACAAAGA+TGG | + | chr3_1:81390050-81390069 | Msa0379940:CDS | 50.0% | |
| TGGCTATGTAGCTTGGACCA+TGG | + | chr3_1:81390070-81390089 | Msa0379940:CDS | 50.0% | |
| AGAGGGTTACGTGATGCCAA+TGG | + | chr3_1:81390137-81390156 | Msa0379940:CDS | 50.0% | |
| !! | GTTGGTTAGGTGATGGAGGT+TGG | - | chr3_1:81390705-81390724 | None:intergenic | 50.0% |
| !! | GTAGGTTGGTTAGGTGATGG+AGG | - | chr3_1:81390709-81390728 | None:intergenic | 50.0% |
| !! | GGAGTAGGTTGGTTAGGTGA+TGG | - | chr3_1:81390712-81390731 | None:intergenic | 50.0% |
| !! | GATGGTGGAGTAGGTTGGTT+AGG | - | chr3_1:81390718-81390737 | None:intergenic | 50.0% |
| !! | AATGGGATGGTGGAGTAGGT+TGG | - | chr3_1:81390723-81390742 | None:intergenic | 50.0% |
| TCCGAGTACGAAAGGAGTTC+TGG | + | chr3_1:81390799-81390818 | Msa0379940:CDS | 50.0% | |
| CAGCAATCAAGGACCTGCTA+TGG | + | chr3_1:81390834-81390853 | Msa0379940:CDS | 50.0% | |
| CCGGTGACATCTTCAAGAAG+AGG | - | chr3_1:81391047-81391066 | None:intergenic | 50.0% | |
| ATCCAAGACAAGCGGTCTTC+CGG | - | chr3_1:81391066-81391085 | None:intergenic | 50.0% | |
| ! | GTTGGAGGTGGAGTGTCTAG+CGG | + | chr3_1:81390538-81390557 | Msa0379940:CDS | 55.0% |
| ! | TTGGAGGTGGAGTGTCTAGC+GGG | + | chr3_1:81390539-81390558 | Msa0379940:CDS | 55.0% |
| ! | GTTGGAGGTGGAGTGTCTAG+CGG | + | chr3_1:81390538-81390557 | Msa0379940:CDS | 55.0% |
| ! | TTGGAGGTGGAGTGTCTAGC+GGG | + | chr3_1:81390539-81390558 | Msa0379940:CDS | 55.0% |
| !! | GGTGATGGAGGTTGGTACGG+TGG | - | chr3_1:81390697-81390716 | None:intergenic | 60.0% |
| CACCGGAAGACCGCTTGTCT+TGG | + | chr3_1:81391061-81391080 | Msa0379940:CDS | 60.0% | |
| !! | GGTGATGGAGGTTGGTACGG+TGG | - | chr3_1:81390697-81390716 | None:intergenic | 60.0% |
| CACCGGAAGACCGCTTGTCT+TGG | + | chr3_1:81391061-81391080 | Msa0379940:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_1 | gene | 81390020 | 81391110 | 81390020 | ID=Msa0379940;Name=Msa0379940 |
| chr3_1 | mRNA | 81390020 | 81391110 | 81390020 | ID=Msa0379940-mRNA-1;Parent=Msa0379940;Name=Msa0379940-mRNA-1;_AED=0.00;_eAED=0.00;_QI=0|0|0|1|1|1|2|0|332 |
| chr3_1 | exon | 81390020 | 81390379 | 81390020 | ID=Msa0379940-mRNA-1:exon:20651;Parent=Msa0379940-mRNA-1 |
| chr3_1 | exon | 81390472 | 81391110 | 81390472 | ID=Msa0379940-mRNA-1:exon:20652;Parent=Msa0379940-mRNA-1 |
| chr3_1 | CDS | 81390020 | 81390379 | 81390020 | ID=Msa0379940-mRNA-1:cds;Parent=Msa0379940-mRNA-1 |
| chr3_1 | CDS | 81390472 | 81391110 | 81390472 | ID=Msa0379940-mRNA-1:cds;Parent=Msa0379940-mRNA-1 |
| Gene Sequence |
| Protein sequence |
