Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0359370 | XP_013469988.2 | 87.243 | 243 | 24 | 2 | 2 | 237 | 13 | 255 | 5.03e-154 | 441 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0359370 | sp|O82368|Y2988_ARATH | 43.038 | 158 | 89 | 1 | 3 | 160 | 14 | 170 | 6.22e-39 | 140 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0359370 | A0A396JV61 | 87.243 | 243 | 24 | 2 | 2 | 237 | 13 | 255 | 2.40e-154 | 441 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0267000 | Msa0359370 | 0.810936 | 8.994345e-51 | -8.615850e-47 |
| Msa0359370 | Msa0787600 | 0.810199 | 1.298224e-50 | -8.615850e-47 |
| Msa0359370 | Msa0879500 | 0.805903 | 1.066005e-49 | -8.615850e-47 |
| Msa0359370 | Msa1025360 | 0.803096 | 4.103081e-49 | -8.615850e-47 |
| Msa0359370 | Msa1025370 | 0.817826 | 2.696505e-52 | -8.615850e-47 |
| Msa0359370 | Msa1044830 | 0.802751 | 4.835733e-49 | -8.615850e-47 |
| Msa0359370 | Msa1044840 | 0.805041 | 1.616839e-49 | -8.615850e-47 |
| Msa0359370 | Msa1287810 | 0.807779 | 4.279305e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0359370 | MtrunA17_Chr1g0207381 | 87.243 | 243 | 24 | 2 | 2 | 237 | 13 | 255 | 4.62e-158 | 441 |
| Msa0359370 | MtrunA17_Chr4g0051721 | 87.845 | 181 | 22 | 0 | 2 | 182 | 13 | 193 | 1.04e-119 | 339 |
| Msa0359370 | MtrunA17_Chr3g0093841 | 29.032 | 155 | 107 | 2 | 4 | 158 | 20 | 171 | 1.75e-11 | 63.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0359370 | AT5G27260.1 | 44.444 | 153 | 84 | 1 | 3 | 155 | 9 | 160 | 3.71e-40 | 140 |
| Msa0359370 | AT2G29880.1 | 43.038 | 158 | 89 | 1 | 3 | 160 | 14 | 170 | 6.32e-40 | 140 |
| Msa0359370 | AT1G30140.2 | 32.889 | 225 | 137 | 5 | 2 | 222 | 8 | 222 | 4.10e-31 | 114 |
| Msa0359370 | AT1G30140.1 | 32.889 | 225 | 137 | 5 | 2 | 222 | 8 | 222 | 4.10e-31 | 114 |
Find 43 sgRNAs with CRISPR-Local
Find 116 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATGCGTAACAACTCTGGTTT+TGG | 0.286642 | 3_1:-46825814 | Msa0359370:CDS |
| TGTTATGAATGCATCATTAT+TGG | 0.292284 | 3_1:+46825452 | None:intergenic |
| TACGGTGGTTCATAATTATC+TGG | 0.363509 | 3_1:+46825429 | None:intergenic |
| GAGCAAGAAAGTGAAAGTTT+TGG | 0.364343 | 3_1:-46825498 | Msa0359370:CDS |
| AGTATGGAGTAATTACTTAA+AGG | 0.368835 | 3_1:-46825752 | Msa0359370:intron |
| TCCGAGTACGAAAGGAGTTC+TGG | 0.386489 | 3_1:-46825309 | Msa0359370:CDS |
| TGAGTTGTTGTTCCTCTTGG+TGG | 0.396694 | 3_1:-46826007 | Msa0359370:CDS |
| GTTATGAATGCATCATTATT+GGG | 0.403613 | 3_1:+46825453 | None:intergenic |
| GAGTTCTAAACCACTTCATT+CGG | 0.405087 | 3_1:+46825860 | None:intergenic |
| GATTATTTGAAGATTCTTGT+TGG | 0.439501 | 3_1:-46825588 | Msa0359370:CDS |
| TTGAAGATTCTTGTTGGAGG+TGG | 0.445118 | 3_1:-46825582 | Msa0359370:CDS |
| GTTGGTTAGGTGATGGAGGT+TGG | 0.445510 | 3_1:+46825406 | None:intergenic |
| ACACGGCTACTGAAGAAGTA+TGG | 0.447236 | 3_1:-46825768 | Msa0359370:CDS |
| TAATGAGTTGTTGTTCCTCT+TGG | 0.447268 | 3_1:-46826010 | Msa0359370:CDS |
| AAAGGAGTTCTGGTGTTGTT+GGG | 0.456514 | 3_1:-46825299 | Msa0359370:CDS |
| GAAAGGAGTTCTGGTGTTGT+TGG | 0.477113 | 3_1:-46825300 | Msa0359370:CDS |
| GATGGTGGAGTAGGTTGGTT+AGG | 0.483841 | 3_1:+46825393 | None:intergenic |
| ACCAGAACTCCTTTCGTACT+CGG | 0.488981 | 3_1:+46825308 | None:intergenic |
| ACGTTTATGCGTAACAACTC+TGG | 0.489769 | 3_1:-46825820 | Msa0359370:CDS |
| TTAGGTGATGGAGGTTGGTA+CGG | 0.489944 | 3_1:+46825411 | None:intergenic |
| ACAAAGATGGCTATGTAGCT+TGG | 0.511243 | 3_1:-46826047 | Msa0359370:CDS |
| GTAGGTTGGTTAGGTGATGG+AGG | 0.512588 | 3_1:+46825402 | None:intergenic |
| TTGTTTACTAAGTGAACCAT+TGG | 0.514833 | 3_1:+46825957 | None:intergenic |
| CAACTCATTAGTTTCTTCCA+TGG | 0.518120 | 3_1:+46826023 | None:intergenic |
| TGTCATTTCTGTAGTAGTGC+AGG | 0.521378 | 3_1:+46825261 | None:intergenic |
| GAAATAGATCCGAGTACGAA+AGG | 0.521953 | 3_1:-46825317 | Msa0359370:CDS |
| AATGGGATGGTGGAGTAGGT+TGG | 0.522124 | 3_1:+46825388 | None:intergenic |
| GGAGTAGGTTGGTTAGGTGA+TGG | 0.533493 | 3_1:+46825399 | None:intergenic |
| TTGGTGGATGCTATAAATAG+AGG | 0.536963 | 3_1:-46825991 | Msa0359370:CDS |
| AAATAATAGAGGGATGGGTA+AGG | 0.543328 | 3_1:-46826070 | None:intergenic |
| TTGGAGGTGGAGTGTCTAGC+GGG | 0.545573 | 3_1:-46825569 | Msa0359370:CDS |
| ATTACTTGAGCCGAATGAAG+TGG | 0.570458 | 3_1:-46825870 | Msa0359370:CDS |
| TGGCTATGTAGCTTGGACCA+TGG | 0.580657 | 3_1:-46826040 | Msa0359370:CDS |
| GTTGTTGGGATCAACAATCA+AGG | 0.582452 | 3_1:-46825285 | Msa0359370:CDS |
| TATTTGAAGATTCTTGTTGG+AGG | 0.595361 | 3_1:-46825585 | Msa0359370:CDS |
| TGGTGGATGCTATAAATAGA+GGG | 0.599601 | 3_1:-46825990 | Msa0359370:CDS |
| TTCTATAGCATTAGACGCTG+AGG | 0.600384 | 3_1:-46825541 | Msa0359370:CDS |
| GGTGATGGAGGTTGGTACGG+TGG | 0.605354 | 3_1:+46825414 | None:intergenic |
| GTTGGAGGTGGAGTGTCTAG+CGG | 0.610018 | 3_1:-46825570 | Msa0359370:CDS |
| TTCAGTTGCAAAGACTTACA+CGG | 0.635359 | 3_1:-46825785 | Msa0359370:CDS |
| AGAGGGTTACGTGATGCCAA+TGG | 0.638045 | 3_1:-46825973 | Msa0359370:CDS |
| TATTTATAGCATCCACCAAG+AGG | 0.660190 | 3_1:+46825995 | None:intergenic |
| GGGATGGGTAAGGACAAAGA+TGG | 0.668592 | 3_1:-46826060 | Msa0359370:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | CGTTTTTTGTAATTCAGTTT+TGG | + | chr3_1:46825423-46825442 | None:intergenic | 25.0% |
| ! | AGTATGGAGTAATTACTTAA+AGG | - | chr3_1:46825568-46825587 | Msa0359370:CDS | 25.0% |
| ! | GATTATTTGAAGATTCTTGT+TGG | - | chr3_1:46825732-46825751 | Msa0359370:intron | 25.0% |
| ! | GTTATGAATGCATCATTATT+GGG | + | chr3_1:46825870-46825889 | None:intergenic | 25.0% |
| ! | TGTTATGAATGCATCATTAT+TGG | + | chr3_1:46825871-46825890 | None:intergenic | 25.0% |
| ! | CTCTGAATCTAAAGAAAAAT+GGG | + | chr3_1:46825952-46825971 | None:intergenic | 25.0% |
| !!! | CGTTTTTTGTAATTCAGTTT+TGG | + | chr3_1:46825423-46825442 | None:intergenic | 25.0% |
| ! | AGTATGGAGTAATTACTTAA+AGG | - | chr3_1:46825568-46825587 | Msa0359370:CDS | 25.0% |
| ! | GATTATTTGAAGATTCTTGT+TGG | - | chr3_1:46825732-46825751 | Msa0359370:intron | 25.0% |
| ! | GTTATGAATGCATCATTATT+GGG | + | chr3_1:46825870-46825889 | None:intergenic | 25.0% |
| ! | TGTTATGAATGCATCATTAT+TGG | + | chr3_1:46825871-46825890 | None:intergenic | 25.0% |
| ! | CTCTGAATCTAAAGAAAAAT+GGG | + | chr3_1:46825952-46825971 | None:intergenic | 25.0% |
| TTGTTTACTAAGTGAACCAT+TGG | + | chr3_1:46825366-46825385 | None:intergenic | 30.0% | |
| !! | GAATATTTTTGTGAGATGGA+TGG | + | chr3_1:46825689-46825708 | None:intergenic | 30.0% |
| TATTTGAAGATTCTTGTTGG+AGG | - | chr3_1:46825735-46825754 | Msa0359370:intron | 30.0% | |
| !!! | AGAAAGTGAAAGTTTTGGAA+TGG | - | chr3_1:46825827-46825846 | Msa0359370:CDS | 30.0% |
| GAATCTAAAGAAAAATGGGA+TGG | + | chr3_1:46825948-46825967 | None:intergenic | 30.0% | |
| CCTCTGAATCTAAAGAAAAA+TGG | + | chr3_1:46825953-46825972 | None:intergenic | 30.0% | |
| !! | CCATTTTTCTTTAGATTCAG+AGG | - | chr3_1:46825950-46825969 | Msa0359370:CDS | 30.0% |
| !! | TGACGATTTCGTTTTTCAAT+AGG | + | chr3_1:46825978-46825997 | None:intergenic | 30.0% |
| TTGTTTACTAAGTGAACCAT+TGG | + | chr3_1:46825366-46825385 | None:intergenic | 30.0% | |
| !! | GAATATTTTTGTGAGATGGA+TGG | + | chr3_1:46825689-46825708 | None:intergenic | 30.0% |
| TATTTGAAGATTCTTGTTGG+AGG | - | chr3_1:46825735-46825754 | Msa0359370:intron | 30.0% | |
| !!! | AGAAAGTGAAAGTTTTGGAA+TGG | - | chr3_1:46825827-46825846 | Msa0359370:CDS | 30.0% |
| GAATCTAAAGAAAAATGGGA+TGG | + | chr3_1:46825948-46825967 | None:intergenic | 30.0% | |
| CCTCTGAATCTAAAGAAAAA+TGG | + | chr3_1:46825953-46825972 | None:intergenic | 30.0% | |
| !! | CCATTTTTCTTTAGATTCAG+AGG | - | chr3_1:46825950-46825969 | Msa0359370:CDS | 30.0% |
| !! | TGACGATTTCGTTTTTCAAT+AGG | + | chr3_1:46825978-46825997 | None:intergenic | 30.0% |
| ! | CAACTCATTAGTTTCTTCCA+TGG | + | chr3_1:46825300-46825319 | None:intergenic | 35.0% |
| ! | TAATGAGTTGTTGTTCCTCT+TGG | - | chr3_1:46825310-46825329 | Msa0359370:CDS | 35.0% |
| TATTTATAGCATCCACCAAG+AGG | + | chr3_1:46825328-46825347 | None:intergenic | 35.0% | |
| ! | TTGGTGGATGCTATAAATAG+AGG | - | chr3_1:46825329-46825348 | Msa0359370:CDS | 35.0% |
| ! | TGGTGGATGCTATAAATAGA+GGG | - | chr3_1:46825330-46825349 | Msa0359370:CDS | 35.0% |
| !! | GAGTTCTAAACCACTTCATT+CGG | + | chr3_1:46825463-46825482 | None:intergenic | 35.0% |
| !!! | TAACAACTCTGGTTTTGGAT+GGG | - | chr3_1:46825511-46825530 | Msa0359370:CDS | 35.0% |
| TTCAGTTGCAAAGACTTACA+CGG | - | chr3_1:46825535-46825554 | Msa0359370:CDS | 35.0% | |
| !! | CCTCGAATATTTTTGTGAGA+TGG | + | chr3_1:46825693-46825712 | None:intergenic | 35.0% |
| CCATCTCACAAAAATATTCG+AGG | - | chr3_1:46825690-46825709 | Msa0359370:intron | 35.0% | |
| ! | GAGCAAGAAAGTGAAAGTTT+TGG | - | chr3_1:46825822-46825841 | Msa0359370:CDS | 35.0% |
| !!! | AGTGAAAGTTTTGGAATGGA+AGG | - | chr3_1:46825831-46825850 | Msa0359370:CDS | 35.0% |
| !!! | GTGAAAGTTTTGGAATGGAA+GGG | - | chr3_1:46825832-46825851 | Msa0359370:CDS | 35.0% |
| TACGGTGGTTCATAATTATC+TGG | + | chr3_1:46825894-46825913 | None:intergenic | 35.0% | |
| TCTAAAGAAAAATGGGATGG+TGG | + | chr3_1:46825945-46825964 | None:intergenic | 35.0% | |
| ! | CAACTCATTAGTTTCTTCCA+TGG | + | chr3_1:46825300-46825319 | None:intergenic | 35.0% |
| ! | TAATGAGTTGTTGTTCCTCT+TGG | - | chr3_1:46825310-46825329 | Msa0359370:CDS | 35.0% |
| TATTTATAGCATCCACCAAG+AGG | + | chr3_1:46825328-46825347 | None:intergenic | 35.0% | |
| ! | TTGGTGGATGCTATAAATAG+AGG | - | chr3_1:46825329-46825348 | Msa0359370:CDS | 35.0% |
| ! | TGGTGGATGCTATAAATAGA+GGG | - | chr3_1:46825330-46825349 | Msa0359370:CDS | 35.0% |
| !! | GAGTTCTAAACCACTTCATT+CGG | + | chr3_1:46825463-46825482 | None:intergenic | 35.0% |
| !!! | TAACAACTCTGGTTTTGGAT+GGG | - | chr3_1:46825511-46825530 | Msa0359370:CDS | 35.0% |
| TTCAGTTGCAAAGACTTACA+CGG | - | chr3_1:46825535-46825554 | Msa0359370:CDS | 35.0% | |
| !! | CCTCGAATATTTTTGTGAGA+TGG | + | chr3_1:46825693-46825712 | None:intergenic | 35.0% |
| CCATCTCACAAAAATATTCG+AGG | - | chr3_1:46825690-46825709 | Msa0359370:intron | 35.0% | |
| ! | GAGCAAGAAAGTGAAAGTTT+TGG | - | chr3_1:46825822-46825841 | Msa0359370:CDS | 35.0% |
| !!! | AGTGAAAGTTTTGGAATGGA+AGG | - | chr3_1:46825831-46825850 | Msa0359370:CDS | 35.0% |
| !!! | GTGAAAGTTTTGGAATGGAA+GGG | - | chr3_1:46825832-46825851 | Msa0359370:CDS | 35.0% |
| TACGGTGGTTCATAATTATC+TGG | + | chr3_1:46825894-46825913 | None:intergenic | 35.0% | |
| TCTAAAGAAAAATGGGATGG+TGG | + | chr3_1:46825945-46825964 | None:intergenic | 35.0% | |
| ACAAAGATGGCTATGTAGCT+TGG | - | chr3_1:46825273-46825292 | Msa0359370:CDS | 40.0% | |
| !!! | TTTTGGAATTGAGCTGAGGA+AGG | + | chr3_1:46825406-46825425 | None:intergenic | 40.0% |
| !!! | TCAGTTTTGGAATTGAGCTG+AGG | + | chr3_1:46825410-46825429 | None:intergenic | 40.0% |
| ATTACTTGAGCCGAATGAAG+TGG | - | chr3_1:46825450-46825469 | Msa0359370:CDS | 40.0% | |
| ACGTTTATGCGTAACAACTC+TGG | - | chr3_1:46825500-46825519 | Msa0359370:CDS | 40.0% | |
| !! | ATGCGTAACAACTCTGGTTT+TGG | - | chr3_1:46825506-46825525 | Msa0359370:CDS | 40.0% |
| !!! | GTAACAACTCTGGTTTTGGA+TGG | - | chr3_1:46825510-46825529 | Msa0359370:CDS | 40.0% |
| TTGAAGATTCTTGTTGGAGG+TGG | - | chr3_1:46825738-46825757 | Msa0359370:intron | 40.0% | |
| TTCTATAGCATTAGACGCTG+AGG | - | chr3_1:46825779-46825798 | Msa0359370:CDS | 40.0% | |
| GAAATAGATCCGAGTACGAA+AGG | - | chr3_1:46826003-46826022 | Msa0359370:CDS | 40.0% | |
| !! | AAAGGAGTTCTGGTGTTGTT+GGG | - | chr3_1:46826021-46826040 | Msa0359370:CDS | 40.0% |
| GTTGTTGGGATCAACAATCA+AGG | - | chr3_1:46826035-46826054 | Msa0359370:CDS | 40.0% | |
| ACAAAGATGGCTATGTAGCT+TGG | - | chr3_1:46825273-46825292 | Msa0359370:CDS | 40.0% | |
| !!! | TTTTGGAATTGAGCTGAGGA+AGG | + | chr3_1:46825406-46825425 | None:intergenic | 40.0% |
| !!! | TCAGTTTTGGAATTGAGCTG+AGG | + | chr3_1:46825410-46825429 | None:intergenic | 40.0% |
| ATTACTTGAGCCGAATGAAG+TGG | - | chr3_1:46825450-46825469 | Msa0359370:CDS | 40.0% | |
| ACGTTTATGCGTAACAACTC+TGG | - | chr3_1:46825500-46825519 | Msa0359370:CDS | 40.0% | |
| !! | ATGCGTAACAACTCTGGTTT+TGG | - | chr3_1:46825506-46825525 | Msa0359370:CDS | 40.0% |
| !!! | GTAACAACTCTGGTTTTGGA+TGG | - | chr3_1:46825510-46825529 | Msa0359370:CDS | 40.0% |
| TTGAAGATTCTTGTTGGAGG+TGG | - | chr3_1:46825738-46825757 | Msa0359370:intron | 40.0% | |
| TTCTATAGCATTAGACGCTG+AGG | - | chr3_1:46825779-46825798 | Msa0359370:CDS | 40.0% | |
| GAAATAGATCCGAGTACGAA+AGG | - | chr3_1:46826003-46826022 | Msa0359370:CDS | 40.0% | |
| !! | AAAGGAGTTCTGGTGTTGTT+GGG | - | chr3_1:46826021-46826040 | Msa0359370:CDS | 40.0% |
| GTTGTTGGGATCAACAATCA+AGG | - | chr3_1:46826035-46826054 | Msa0359370:CDS | 40.0% | |
| ! | TGAGTTGTTGTTCCTCTTGG+TGG | - | chr3_1:46825313-46825332 | Msa0359370:CDS | 45.0% |
| ACACGGCTACTGAAGAAGTA+TGG | - | chr3_1:46825552-46825571 | Msa0359370:CDS | 45.0% | |
| !! | TTAGGTGATGGAGGTTGGTA+CGG | + | chr3_1:46825912-46825931 | None:intergenic | 45.0% |
| !! | GAAAAATGGGATGGTGGAGT+AGG | + | chr3_1:46825939-46825958 | None:intergenic | 45.0% |
| ACCAGAACTCCTTTCGTACT+CGG | + | chr3_1:46826015-46826034 | None:intergenic | 45.0% | |
| !! | GAAAGGAGTTCTGGTGTTGT+TGG | - | chr3_1:46826020-46826039 | Msa0359370:CDS | 45.0% |
| ! | TGAGTTGTTGTTCCTCTTGG+TGG | - | chr3_1:46825313-46825332 | Msa0359370:CDS | 45.0% |
| ACACGGCTACTGAAGAAGTA+TGG | - | chr3_1:46825552-46825571 | Msa0359370:CDS | 45.0% | |
| !! | TTAGGTGATGGAGGTTGGTA+CGG | + | chr3_1:46825912-46825931 | None:intergenic | 45.0% |
| !! | GAAAAATGGGATGGTGGAGT+AGG | + | chr3_1:46825939-46825958 | None:intergenic | 45.0% |
| ACCAGAACTCCTTTCGTACT+CGG | + | chr3_1:46826015-46826034 | None:intergenic | 45.0% | |
| !! | GAAAGGAGTTCTGGTGTTGT+TGG | - | chr3_1:46826020-46826039 | Msa0359370:CDS | 45.0% |
| TGGCTATGTAGCTTGGACCA+TGG | - | chr3_1:46825280-46825299 | Msa0359370:CDS | 50.0% | |
| AGAGGGTTACGTGATGCCAA+TGG | - | chr3_1:46825347-46825366 | Msa0359370:CDS | 50.0% | |
| !! | GTTGGTTAGGTGATGGAGGT+TGG | + | chr3_1:46825917-46825936 | None:intergenic | 50.0% |
| !! | GTAGGTTGGTTAGGTGATGG+AGG | + | chr3_1:46825921-46825940 | None:intergenic | 50.0% |
| !! | GGAGTAGGTTGGTTAGGTGA+TGG | + | chr3_1:46825924-46825943 | None:intergenic | 50.0% |
| !! | GATGGTGGAGTAGGTTGGTT+AGG | + | chr3_1:46825930-46825949 | None:intergenic | 50.0% |
| !! | AATGGGATGGTGGAGTAGGT+TGG | + | chr3_1:46825935-46825954 | None:intergenic | 50.0% |
| TCCGAGTACGAAAGGAGTTC+TGG | - | chr3_1:46826011-46826030 | Msa0359370:CDS | 50.0% | |
| TGGCTATGTAGCTTGGACCA+TGG | - | chr3_1:46825280-46825299 | Msa0359370:CDS | 50.0% | |
| AGAGGGTTACGTGATGCCAA+TGG | - | chr3_1:46825347-46825366 | Msa0359370:CDS | 50.0% | |
| !! | GTTGGTTAGGTGATGGAGGT+TGG | + | chr3_1:46825917-46825936 | None:intergenic | 50.0% |
| !! | GTAGGTTGGTTAGGTGATGG+AGG | + | chr3_1:46825921-46825940 | None:intergenic | 50.0% |
| !! | GGAGTAGGTTGGTTAGGTGA+TGG | + | chr3_1:46825924-46825943 | None:intergenic | 50.0% |
| !! | GATGGTGGAGTAGGTTGGTT+AGG | + | chr3_1:46825930-46825949 | None:intergenic | 50.0% |
| !! | AATGGGATGGTGGAGTAGGT+TGG | + | chr3_1:46825935-46825954 | None:intergenic | 50.0% |
| TCCGAGTACGAAAGGAGTTC+TGG | - | chr3_1:46826011-46826030 | Msa0359370:CDS | 50.0% | |
| ! | GTTGGAGGTGGAGTGTCTAG+CGG | - | chr3_1:46825750-46825769 | Msa0359370:intron | 55.0% |
| ! | TTGGAGGTGGAGTGTCTAGC+GGG | - | chr3_1:46825751-46825770 | Msa0359370:intron | 55.0% |
| ! | GTTGGAGGTGGAGTGTCTAG+CGG | - | chr3_1:46825750-46825769 | Msa0359370:intron | 55.0% |
| ! | TTGGAGGTGGAGTGTCTAGC+GGG | - | chr3_1:46825751-46825770 | Msa0359370:intron | 55.0% |
| !! | GGTGATGGAGGTTGGTACGG+TGG | + | chr3_1:46825909-46825928 | None:intergenic | 60.0% |
| !! | GGTGATGGAGGTTGGTACGG+TGG | + | chr3_1:46825909-46825928 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_1 | gene | 46825263 | 46826079 | 46825263 | ID=Msa0359370;Name=Msa0359370 |
| chr3_1 | mRNA | 46825263 | 46826079 | 46825263 | ID=Msa0359370-mRNA-1;Parent=Msa0359370;Name=Msa0359370-mRNA-1;_AED=0.15;_eAED=0.15;_QI=0|0|0|1|1|1|2|0|240 |
| chr3_1 | exon | 46825753 | 46826079 | 46825753 | ID=Msa0359370-mRNA-1:exon:8266;Parent=Msa0359370-mRNA-1 |
| chr3_1 | exon | 46825263 | 46825658 | 46825263 | ID=Msa0359370-mRNA-1:exon:8265;Parent=Msa0359370-mRNA-1 |
| chr3_1 | CDS | 46825753 | 46826079 | 46825753 | ID=Msa0359370-mRNA-1:cds;Parent=Msa0359370-mRNA-1 |
| chr3_1 | CDS | 46825263 | 46825658 | 46825263 | ID=Msa0359370-mRNA-1:cds;Parent=Msa0359370-mRNA-1 |
| Gene Sequence |
| Protein sequence |
