AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0612920

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0612920 MtrunA17_Chr4g0047701 90.000 310 26 2 16 320 1 310 0.0 555
Msa0612920 MtrunA17_Chr4g0047681 80.635 315 46 2 16 320 1 310 0.0 506
Msa0612920 MtrunA17_Chr2g0324161 57.827 313 122 3 16 320 1 311 9.64e-134 382
Msa0612920 MtrunA17_Chr2g0324141 59.164 311 121 3 16 320 1 311 1.19e-132 379
Msa0612920 MtrunA17_Chr8g0372491 36.025 322 182 8 15 319 2 316 3.66e-62 200
Msa0612920 MtrunA17_Chr7g0272451 34.675 323 184 10 16 319 1 315 1.44e-57 188
Msa0612920 MtrunA17_Chr7g0272481 34.877 324 185 9 16 319 1 318 3.49e-57 187
Msa0612920 MtrunA17_Chr7g0272431 34.568 324 186 9 16 319 1 318 6.94e-57 186
Msa0612920 MtrunA17_Chr7g0272441 33.951 324 188 9 16 319 1 318 8.88e-57 186
Msa0612920 MtrunA17_Chr7g0272501 34.877 324 185 9 16 319 1 318 1.15e-55 183
Msa0612920 MtrunA17_Chr7g0272181 34.568 324 186 9 16 319 1 318 5.21e-55 181
Msa0612920 MtrunA17_Chr7g0272171 34.259 324 187 9 16 319 1 318 1.11e-54 181
Msa0612920 MtrunA17_Chr7g0272531 34.568 324 186 9 16 319 31 348 1.79e-54 181
Msa0612920 MtrunA17_Chr7g0269471 31.790 324 193 9 16 319 1 316 1.02e-51 173
Msa0612920 MtrunA17_Chr4g0000111 32.317 328 191 10 16 319 1 321 1.19e-50 170
Msa0612920 MtrunA17_Chr4g0067581 30.473 338 211 9 1 319 22 354 1.13e-48 166
Msa0612920 MtrunA17_Chr7g0272471 35.849 159 86 4 16 161 1 156 2.81e-30 112
Msa0612920 MtrunA17_Chr1g0192291 46.875 96 50 1 16 111 1 95 2.74e-28 107
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0612920 AT3G51000.1 36.562 320 178 10 19 319 5 318 2.72e-60 196
Msa0612920 AT4G02340.1 32.817 323 190 10 16 319 1 315 1.25e-55 184
Msa0612920 AT4G15960.1 30.861 337 206 12 6 319 41 373 5.35e-48 165
Msa0612920 AT3G05600.1 32.622 328 192 10 16 319 1 323 1.27e-47 163
Msa0612920 AT2G26740.1 32.209 326 190 11 19 319 1 320 2.55e-46 159
Msa0612920 AT2G26750.1 30.218 321 200 9 19 318 1 318 1.27e-41 147
Msa0612920 AT3G05600.2 34.146 246 138 8 16 242 1 241 1.82e-37 134
Msa0612920 AT4G15955.3 28.571 322 172 11 20 313 6 297 3.36e-37 135
Msa0612920 AT4G15955.2 33.523 176 91 6 20 172 6 178 2.98e-26 103
Msa0612920 AT4G15955.1 33.333 168 86 6 20 164 6 170 1.80e-23 95.5

Find 120 sgRNAs with CRISPR-Local

Find 327 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTCCTAACACCGGCCCTTTC+TGG 0.115349 4_2:-61458336 None:intergenic
CAAAGAGCTTGTTCCCAATT+TGG 0.185506 4_2:+61459046 Msa0612920:CDS
GGAAGAGCAGAGGCTGATTT+TGG 0.200412 4_2:+61458535 Msa0612920:CDS
AATAAATGTAACCTCCAAAT+TGG 0.220324 4_2:-61459060 None:intergenic
CTCAAAATGTAGAAGCCTTC+TGG 0.243501 4_2:-61458418 None:intergenic
GAGGATGATCTTTCAACTTA+TGG 0.263184 4_2:+61458691 Msa0612920:CDS
AGTTCCAACACTGCTGATAA+TGG 0.288259 4_2:+61458962 Msa0612920:CDS
TCCTAACACCGGCCCTTTCT+GGG 0.302016 4_2:-61458335 None:intergenic
TGATGCTCTTGCTATTTCTA+AGG 0.307622 4_2:+61457706 Msa0612920:CDS
ATAAGCTGATTCACCTGTTC+AGG 0.319063 4_2:-61459116 None:intergenic
CAAATTGGGAACAAGCTCTT+TGG 0.323505 4_2:-61459045 None:intergenic
GATTATGTTTACAAGTTTCC+AGG 0.357852 4_2:+61458993 Msa0612920:CDS
AAATCAGCCTCTGCTCTTCC+CGG 0.368451 4_2:-61458532 None:intergenic
CAAGAGGGAAGAGGGGTATC+AGG 0.369676 4_2:-61458661 None:intergenic
TGGATTCCGAACCGCATTGC+AGG 0.372430 4_2:+61458732 Msa0612920:CDS
CACCAGATGATAGCTCTTGC+AGG 0.373641 4_2:+61457569 Msa0612920:CDS
CCACTAAATCCATGATCTCT+TGG 0.374190 4_2:-61458636 None:intergenic
GACGAAACTTCAAATGTGTT+TGG 0.378024 4_2:-61459153 None:intergenic
GTTAGGAAATCTTTAACATA+TGG 0.378426 4_2:-61459438 None:intergenic
CTGATACCCCTCTTCCCTCT+TGG 0.378746 4_2:+61458662 Msa0612920:CDS
GGAGCCTTGTATGAGAAATC+TGG 0.381671 4_2:+61458712 Msa0612920:CDS
TTCACGGTTTCCCGGAGATA+TGG 0.385602 4_2:+61457534 Msa0612920:CDS
TCAAGAACAATTTCCTGAAC+AGG 0.386873 4_2:+61459103 Msa0612920:CDS
CCAAGAGATCATGGATTTAG+TGG 0.389288 4_2:+61458636 Msa0612920:CDS
TCAAAATGTAGAAGCCTTCT+GGG 0.389772 4_2:-61458417 None:intergenic
CATGAATGGTCTGTGTTGTT+TGG 0.393620 4_2:+61459175 Msa0612920:three_prime_UTR
ACCCAGAAAGGGCCGGTGTT+AGG 0.403443 4_2:+61458334 Msa0612920:CDS
AGTATTCCTTCACGGTTTCC+CGG 0.404239 4_2:+61457526 Msa0612920:CDS
GTAATTCACTTCTTGAGAAA+AGG 0.410122 4_2:-61458597 None:intergenic
ATTTGAAGTTTCGTCATGAA+TGG 0.411573 4_2:+61459161 Msa0612920:exon
GAGGGGCCTGGTGGAACATA+TGG 0.413007 4_2:-61458376 None:intergenic
TGAAGGAATACTACGACGTT+TGG 0.425614 4_2:-61457515 None:intergenic
CCAGCCGCTTCAAATTGTTT+CGG 0.427383 4_2:-61459217 None:intergenic
AGTCCATAGCCTCTGTAATC+AGG 0.428002 4_2:-61457614 None:intergenic
TTTAATAAATCTTCAATCCC+TGG 0.429288 4_2:-61459011 None:intergenic
CCGAAACAATTTGAAGCGGC+TGG 0.431666 4_2:+61459217 Msa0612920:three_prime_UTR
GTTCCAACACTGCTGATAAT+GGG 0.431775 4_2:+61458963 Msa0612920:CDS
ATCCGACCAGCCTCCTGAAC+CGG 0.433671 4_2:+61457637 Msa0612920:CDS
CGCCAGGAGTACCATATCTC+CGG 0.439235 4_2:-61457545 None:intergenic
AGTCGAAACACATTCATTCA+TGG 0.441033 4_2:+61457346 Msa0612920:CDS
ATAAATGTAACCTCCAAATT+GGG 0.450227 4_2:-61459059 None:intergenic
GCAGTAGGATACCATGGTCT+TGG 0.454293 4_2:-61459416 None:intergenic
CCGCATTGCAGGTCCCATAT+AGG 0.456313 4_2:+61458743 Msa0612920:CDS
ACTGCTGATAATGGGTGAAA+AGG 0.458986 4_2:+61458971 Msa0612920:CDS
TTTGAGAGCTCCTACATTAA+CGG 0.460440 4_2:-61457387 None:intergenic
TTTCAAAGACGAAATGGTAA+AGG 0.461336 4_2:+61459389 Msa0612920:three_prime_UTR
AGGAGCGATCGCTCTGAAAC+CGG 0.463921 4_2:-61457594 None:intergenic
TGAACAAAATGAGTTCCCTC+TGG 0.477392 4_2:-61459083 None:intergenic
AAACTCCACATAGCAGAGAT+TGG 0.477759 4_2:+61457407 Msa0612920:CDS
TTTCCATTCTACACCCAGAA+AGG 0.479717 4_2:+61458322 Msa0612920:CDS
TCACCCATTATCAGCAGTGT+TGG 0.480037 4_2:-61458966 None:intergenic
TCCCGGAGATATGGTACTCC+TGG 0.481360 4_2:+61457543 Msa0612920:CDS
GGAACTTTGACTACAGGATC+TGG 0.481430 4_2:-61458945 None:intergenic
GTGTTAGGAGTTATCACATT+GGG 0.482918 4_2:+61458349 Msa0612920:CDS
AGCTATCATCTGGTGGCGCC+AGG 0.483676 4_2:-61457561 None:intergenic
TATCAAATAACACAATGGTT+AGG 0.490684 4_2:-61459455 None:intergenic
CTACATTAACGGACTTGTGT+TGG 0.491509 4_2:-61457376 None:intergenic
ATGGGACCTGCAATGCGGTT+CGG 0.491999 4_2:-61458738 None:intergenic
GGCCCTTTCTGGGTGTAGAA+TGG 0.493075 4_2:-61458325 None:intergenic
TTCCATTCTACACCCAGAAA+GGG 0.493244 4_2:+61458323 Msa0612920:CDS
AACGTCGTAGTATTCCTTCA+CGG 0.495365 4_2:+61457518 Msa0612920:CDS
ATGATAGCTCTTGCAGGTGC+CGG 0.495873 4_2:+61457575 Msa0612920:CDS
AGTGTTGGAACTTTGACTAC+AGG 0.496106 4_2:-61458951 None:intergenic
CACATAGCAGAGATTGGAAC+CGG 0.504689 4_2:+61457413 Msa0612920:CDS
CACCTGCAAGAGCTATCATC+TGG 0.513850 4_2:-61457571 None:intergenic
TAATGAAAACCAAGAGATCA+TGG 0.518871 4_2:+61458627 Msa0612920:CDS
AGAATGGAAAACAGATATGC+AGG 0.524659 4_2:-61458309 None:intergenic
AAGCAAGAGAAACCTGGGCT+TGG 0.524757 4_2:+61457296 Msa0612920:five_prime_UTR
GCTCCTGATTACAGAGGCTA+TGG 0.526948 4_2:+61457611 Msa0612920:CDS
CAGTAAACCAAGAGGGAAGA+GGG 0.529202 4_2:-61458669 None:intergenic
AAGTATTTATGTAGCATAGA+GGG 0.532404 4_2:-61458394 None:intergenic
GTAATAAAGCAAGAGAAACC+TGG 0.537351 4_2:+61457290 Msa0612920:five_prime_UTR
GAGCATCAAGAATCGCTAGA+AGG 0.538056 4_2:-61457691 None:intergenic
GCCAGGAGTACCATATCTCC+GGG 0.548729 4_2:-61457544 None:intergenic
GAATCCAGATTTCTCATACA+AGG 0.550335 4_2:-61458716 None:intergenic
CGGTTCCAATCTCTGCTATG+TGG 0.550408 4_2:-61457412 None:intergenic
ATTATGTTTACAAGTTTCCA+GGG 0.552945 4_2:+61458994 Msa0612920:CDS
AACACTGACATGCCAAGCCC+AGG 0.554026 4_2:-61457308 None:intergenic
TCAGTAAACCAAGAGGGAAG+AGG 0.558091 4_2:-61458670 None:intergenic
AACTTCAAATGTGTTTGGCT+AGG 0.559632 4_2:-61459148 None:intergenic
CAACACAAGTCCGTTAATGT+AGG 0.561856 4_2:+61457377 Msa0612920:CDS
AATCTTTAACATATGGCAGT+AGG 0.562412 4_2:-61459431 None:intergenic
GAAGTATTTATGTAGCATAG+AGG 0.563430 4_2:-61458395 None:intergenic
TTATGTAGCATAGAGGGGCC+TGG 0.565454 4_2:-61458388 None:intergenic
TCTTCCCTCTTGGTTTACTG+AGG 0.566880 4_2:+61458672 Msa0612920:CDS
TGTGTTGTTTGGCAAGTGTG+TGG 0.567195 4_2:+61459186 Msa0612920:three_prime_UTR
TTCCGGTTCAGGAGGCTGGT+CGG 0.569863 4_2:-61457639 None:intergenic
AGAGCTTGTTCCCAATTTGG+AGG 0.570200 4_2:+61459049 Msa0612920:CDS
TTCTAGTTATGATTGAAACA+TGG 0.573811 4_2:+61459301 Msa0612920:three_prime_UTR
GCGGCTGGAATTTCTTGCGA+AGG 0.575091 4_2:+61459232 Msa0612920:three_prime_UTR
TGTGTTTGGCTAGGAAAGCA+AGG 0.576133 4_2:-61459139 None:intergenic
ACTCGTAAAATAAGAGATTG+TGG 0.587400 4_2:+61459257 Msa0612920:three_prime_UTR
GGAGTTCCATATGTTCCACC+AGG 0.591585 4_2:+61458370 Msa0612920:CDS
TAATAAAGCAAGAGAAACCT+GGG 0.595027 4_2:+61457291 Msa0612920:five_prime_UTR
GAGGTTACATTTATTCCAGA+GGG 0.598659 4_2:+61459068 Msa0612920:CDS
CTACATAAATACTTCCCAGA+AGG 0.600433 4_2:+61458403 Msa0612920:CDS
GGAGGTTACATTTATTCCAG+AGG 0.613456 4_2:+61459067 Msa0612920:CDS
CATATGGCAGTAGGATACCA+TGG 0.613999 4_2:-61459422 None:intergenic
GTCGTTGAGAAGATCAGTGA+AGG 0.615204 4_2:-61457669 None:intergenic
GTTATGATTGAAACATGGAT+TGG 0.620851 4_2:+61459306 Msa0612920:three_prime_UTR
ATTCTACACCCAGAAAGGGC+CGG 0.623220 4_2:+61458327 Msa0612920:CDS
GTTGTTTGGCAAGTGTGTGG+AGG 0.625453 4_2:+61459189 Msa0612920:three_prime_UTR
CTGCAAGAGCTATCATCTGG+TGG 0.628633 4_2:-61457568 None:intergenic
TGTATTATGTATCAGGAACC+GGG 0.629351 4_2:+61458514 Msa0612920:intron
TTTACCGAAACAATTTGAAG+CGG 0.636132 4_2:+61459213 Msa0612920:three_prime_UTR
GTAAAGGATTTCCAAGACCA+TGG 0.640558 4_2:+61459405 Msa0612920:three_prime_UTR
TCTGTTATCAAATAACACAA+TGG 0.641693 4_2:-61459460 None:intergenic
TCAGGAACCGGGAAGAGCAG+AGG 0.643310 4_2:+61458525 Msa0612920:intron
ATATCTCCGGGAAACCGTGA+AGG 0.646295 4_2:-61457532 None:intergenic
TCATCCTCAGTAAACCAAGA+GGG 0.652446 4_2:-61458676 None:intergenic
GTTGAGAAGATCAGTGAAGG+TGG 0.661175 4_2:-61457666 None:intergenic
ATCATCCTCAGTAAACCAAG+AGG 0.664682 4_2:-61458677 None:intergenic
TGTAGCATAGAGGGGCCTGG+TGG 0.676429 4_2:-61458385 None:intergenic
AGTATTTATGTAGCATAGAG+GGG 0.678861 4_2:-61458393 None:intergenic
AGTAAACCAAGAGGGAAGAG+GGG 0.692604 4_2:-61458668 None:intergenic
ATGGAAAACAGATATGCAGG+AGG 0.696707 4_2:-61458306 None:intergenic
GGTGTTAGGAGTTATCACAT+TGG 0.700989 4_2:+61458348 Msa0612920:CDS
GCGATCGCTCCTGATTACAG+AGG 0.703874 4_2:+61457605 Msa0612920:CDS
AATGTGATAACTCCTAACAC+CGG 0.722615 4_2:-61458346 None:intergenic
CCTATATGGGACCTGCAATG+CGG 0.736611 4_2:-61458743 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATATAAATGCATAAAAAATT+AGG - chr4_2:61458251-61458270 None:intergenic 10.0%
!! ATATAAATGCATAAAAAATT+AGG - chr4_2:61458251-61458270 None:intergenic 10.0%
!! GATTCTAATAAAGATAAGAA+AGG - chr4_2:61457487-61457506 None:intergenic 20.0%
!! TATCTTTATTAGAATCTTTC+AGG + chr4_2:61457491-61457510 Msa0612920:intron 20.0%
!! TATAATATTGAGCATAGATT+TGG - chr4_2:61457888-61457907 None:intergenic 20.0%
!!! TTTTTTACTTCAACATGTTT+TGG + chr4_2:61458091-61458110 Msa0612920:intron 20.0%
!!! TTTTTATGCATTTATATCCT+AGG + chr4_2:61458254-61458273 Msa0612920:intron 20.0%
!!! GTAAATCTATTTTTCCTTTT+AGG + chr4_2:61458448-61458467 Msa0612920:intron 20.0%
!! GTTTATATGTATTATGTATC+AGG + chr4_2:61458507-61458526 Msa0612920:intron 20.0%
!!! ACATTTTCACTATGAAAAAA+AGG - chr4_2:61458798-61458817 None:intergenic 20.0%
!!! CAAAAGAATATTTTTCTGAT+AGG - chr4_2:61458841-61458860 None:intergenic 20.0%
!!! TTTTTTTTTCAAAGACGAAA+TGG + chr4_2:61459383-61459402 Msa0612920:three_prime_UTR 20.0%
!! GATTCTAATAAAGATAAGAA+AGG - chr4_2:61457487-61457506 None:intergenic 20.0%
!! TATCTTTATTAGAATCTTTC+AGG + chr4_2:61457491-61457510 Msa0612920:intron 20.0%
!! TATAATATTGAGCATAGATT+TGG - chr4_2:61457888-61457907 None:intergenic 20.0%
!!! TTTTTTACTTCAACATGTTT+TGG + chr4_2:61458091-61458110 Msa0612920:intron 20.0%
!!! TTTTTATGCATTTATATCCT+AGG + chr4_2:61458254-61458273 Msa0612920:intron 20.0%
!!! GTAAATCTATTTTTCCTTTT+AGG + chr4_2:61458448-61458467 Msa0612920:intron 20.0%
!! GTTTATATGTATTATGTATC+AGG + chr4_2:61458507-61458526 Msa0612920:intron 20.0%
!!! ACATTTTCACTATGAAAAAA+AGG - chr4_2:61458798-61458817 None:intergenic 20.0%
!!! CAAAAGAATATTTTTCTGAT+AGG - chr4_2:61458841-61458860 None:intergenic 20.0%
!!! TTTTTTTTTCAAAGACGAAA+TGG + chr4_2:61459383-61459402 Msa0612920:three_prime_UTR 20.0%
!! AAATCTAAAATTCCAACACA+AGG - chr4_2:61457826-61457845 None:intergenic 25.0%
!! TTTCTTGTTGGAAAAGATTT+TGG + chr4_2:61458279-61458298 Msa0612920:intron 25.0%
! AAGTATTTATGTAGCATAGA+GGG - chr4_2:61458397-61458416 None:intergenic 25.0%
! AAAAAAGTTAGCACCTATAT+GGG - chr4_2:61458759-61458778 None:intergenic 25.0%
! ATTATGTTTACAAGTTTCCA+GGG + chr4_2:61458994-61459013 Msa0612920:CDS 25.0%
! TTTAATAAATCTTCAATCCC+TGG - chr4_2:61459014-61459033 None:intergenic 25.0%
! ATAAATGTAACCTCCAAATT+GGG - chr4_2:61459062-61459081 None:intergenic 25.0%
! AATAAATGTAACCTCCAAAT+TGG - chr4_2:61459063-61459082 None:intergenic 25.0%
!! TTCTAGTTATGATTGAAACA+TGG + chr4_2:61459301-61459320 Msa0612920:three_prime_UTR 25.0%
! GTTAGGAAATCTTTAACATA+TGG - chr4_2:61459441-61459460 None:intergenic 25.0%
! TATCAAATAACACAATGGTT+AGG - chr4_2:61459458-61459477 None:intergenic 25.0%
! TCTGTTATCAAATAACACAA+TGG - chr4_2:61459463-61459482 None:intergenic 25.0%
!! AAATCTAAAATTCCAACACA+AGG - chr4_2:61457826-61457845 None:intergenic 25.0%
!! TTTCTTGTTGGAAAAGATTT+TGG + chr4_2:61458279-61458298 Msa0612920:intron 25.0%
! AAGTATTTATGTAGCATAGA+GGG - chr4_2:61458397-61458416 None:intergenic 25.0%
! AAAAAAGTTAGCACCTATAT+GGG - chr4_2:61458759-61458778 None:intergenic 25.0%
! ATTATGTTTACAAGTTTCCA+GGG + chr4_2:61458994-61459013 Msa0612920:CDS 25.0%
! TTTAATAAATCTTCAATCCC+TGG - chr4_2:61459014-61459033 None:intergenic 25.0%
! ATAAATGTAACCTCCAAATT+GGG - chr4_2:61459062-61459081 None:intergenic 25.0%
! AATAAATGTAACCTCCAAAT+TGG - chr4_2:61459063-61459082 None:intergenic 25.0%
!! TTCTAGTTATGATTGAAACA+TGG + chr4_2:61459301-61459320 Msa0612920:three_prime_UTR 25.0%
! GTTAGGAAATCTTTAACATA+TGG - chr4_2:61459441-61459460 None:intergenic 25.0%
! TATCAAATAACACAATGGTT+AGG - chr4_2:61459458-61459477 None:intergenic 25.0%
! TCTGTTATCAAATAACACAA+TGG - chr4_2:61459463-61459482 None:intergenic 25.0%
TAATAAAGCAAGAGAAACCT+GGG + chr4_2:61457291-61457310 Msa0612920:five_prime_UTR 30.0%
ATTATGGATGAAAACAGTCA+CGG - chr4_2:61458169-61458188 None:intergenic 30.0%
AGTATTTATGTAGCATAGAG+GGG - chr4_2:61458396-61458415 None:intergenic 30.0%
! GAAGTATTTATGTAGCATAG+AGG - chr4_2:61458398-61458417 None:intergenic 30.0%
ATCGATAGTAAAAGCCTAAA+AGG - chr4_2:61458465-61458484 None:intergenic 30.0%
TTACTATCGATCTATCATCA+TGG + chr4_2:61458474-61458493 Msa0612920:intron 30.0%
ATGTATTATGTATCAGGAAC+CGG + chr4_2:61458513-61458532 Msa0612920:intron 30.0%
GTAATTCACTTCTTGAGAAA+AGG - chr4_2:61458600-61458619 None:intergenic 30.0%
!! TCTTGGTTTTCATTAGCTAT+TGG - chr4_2:61458622-61458641 None:intergenic 30.0%
TAATGAAAACCAAGAGATCA+TGG + chr4_2:61458627-61458646 Msa0612920:CDS 30.0%
GAAAAAAGTTAGCACCTATA+TGG - chr4_2:61458760-61458779 None:intergenic 30.0%
AGTGAAAATGTGAAATGCTA+TGG + chr4_2:61458807-61458826 Msa0612920:intron 30.0%
! TTGTACTTTTGTAGAACAGT+TGG + chr4_2:61458906-61458925 Msa0612920:intron 30.0%
GATTATGTTTACAAGTTTCC+AGG + chr4_2:61458993-61459012 Msa0612920:CDS 30.0%
! ATTTGAAGTTTCGTCATGAA+TGG + chr4_2:61459161-61459180 Msa0612920:exon 30.0%
TTTACCGAAACAATTTGAAG+CGG + chr4_2:61459213-61459232 Msa0612920:three_prime_UTR 30.0%
ACTCGTAAAATAAGAGATTG+TGG + chr4_2:61459257-61459276 Msa0612920:three_prime_UTR 30.0%
GTTATGATTGAAACATGGAT+TGG + chr4_2:61459306-61459325 Msa0612920:three_prime_UTR 30.0%
TTTCAAAGACGAAATGGTAA+AGG + chr4_2:61459389-61459408 Msa0612920:three_prime_UTR 30.0%
AATCTTTAACATATGGCAGT+AGG - chr4_2:61459434-61459453 None:intergenic 30.0%
TAATAAAGCAAGAGAAACCT+GGG + chr4_2:61457291-61457310 Msa0612920:five_prime_UTR 30.0%
ATTATGGATGAAAACAGTCA+CGG - chr4_2:61458169-61458188 None:intergenic 30.0%
AGTATTTATGTAGCATAGAG+GGG - chr4_2:61458396-61458415 None:intergenic 30.0%
! GAAGTATTTATGTAGCATAG+AGG - chr4_2:61458398-61458417 None:intergenic 30.0%
ATCGATAGTAAAAGCCTAAA+AGG - chr4_2:61458465-61458484 None:intergenic 30.0%
TTACTATCGATCTATCATCA+TGG + chr4_2:61458474-61458493 Msa0612920:intron 30.0%
ATGTATTATGTATCAGGAAC+CGG + chr4_2:61458513-61458532 Msa0612920:intron 30.0%
GTAATTCACTTCTTGAGAAA+AGG - chr4_2:61458600-61458619 None:intergenic 30.0%
!! TCTTGGTTTTCATTAGCTAT+TGG - chr4_2:61458622-61458641 None:intergenic 30.0%
TAATGAAAACCAAGAGATCA+TGG + chr4_2:61458627-61458646 Msa0612920:CDS 30.0%
GAAAAAAGTTAGCACCTATA+TGG - chr4_2:61458760-61458779 None:intergenic 30.0%
AGTGAAAATGTGAAATGCTA+TGG + chr4_2:61458807-61458826 Msa0612920:intron 30.0%
! TTGTACTTTTGTAGAACAGT+TGG + chr4_2:61458906-61458925 Msa0612920:intron 30.0%
GATTATGTTTACAAGTTTCC+AGG + chr4_2:61458993-61459012 Msa0612920:CDS 30.0%
! ATTTGAAGTTTCGTCATGAA+TGG + chr4_2:61459161-61459180 Msa0612920:exon 30.0%
TTTACCGAAACAATTTGAAG+CGG + chr4_2:61459213-61459232 Msa0612920:three_prime_UTR 30.0%
ACTCGTAAAATAAGAGATTG+TGG + chr4_2:61459257-61459276 Msa0612920:three_prime_UTR 30.0%
GTTATGATTGAAACATGGAT+TGG + chr4_2:61459306-61459325 Msa0612920:three_prime_UTR 30.0%
TTTCAAAGACGAAATGGTAA+AGG + chr4_2:61459389-61459408 Msa0612920:three_prime_UTR 30.0%
AATCTTTAACATATGGCAGT+AGG - chr4_2:61459434-61459453 None:intergenic 30.0%
GTAATAAAGCAAGAGAAACC+TGG + chr4_2:61457290-61457309 Msa0612920:five_prime_UTR 35.0%
AGTCGAAACACATTCATTCA+TGG + chr4_2:61457346-61457365 Msa0612920:CDS 35.0%
TTTGAGAGCTCCTACATTAA+CGG - chr4_2:61457390-61457409 None:intergenic 35.0%
AAGATTGGATTCTGACTAAC+CGG - chr4_2:61457435-61457454 None:intergenic 35.0%
TCACAAGACAAGACAAAGAT+TGG - chr4_2:61457450-61457469 None:intergenic 35.0%
!! TGATGCTCTTGCTATTTCTA+AGG + chr4_2:61457706-61457725 Msa0612920:CDS 35.0%
AGTCTCTCATATTTGCGAAT+TGG - chr4_2:61457993-61458012 None:intergenic 35.0%
GCTGGAATTGCTTCAAATTA+TGG - chr4_2:61458185-61458204 None:intergenic 35.0%
ATATCCTAGGTGTTTCTTGT+TGG + chr4_2:61458267-61458286 Msa0612920:intron 35.0%
! TTTTCCAACAAGAAACACCT+AGG - chr4_2:61458274-61458293 None:intergenic 35.0%
! CTTGTTGGAAAAGATTTTGG+AGG + chr4_2:61458282-61458301 Msa0612920:intron 35.0%
AGAATGGAAAACAGATATGC+AGG - chr4_2:61458312-61458331 None:intergenic 35.0%
AATGTGATAACTCCTAACAC+CGG - chr4_2:61458349-61458368 None:intergenic 35.0%
GTGTTAGGAGTTATCACATT+GGG + chr4_2:61458349-61458368 Msa0612920:CDS 35.0%
CTACATAAATACTTCCCAGA+AGG + chr4_2:61458403-61458422 Msa0612920:CDS 35.0%
TCAAAATGTAGAAGCCTTCT+GGG - chr4_2:61458420-61458439 None:intergenic 35.0%
!! AAGGCTTCTACATTTTGAGA+TGG + chr4_2:61458422-61458441 Msa0612920:CDS 35.0%
!!! CTTCTACATTTTGAGATGGA+AGG + chr4_2:61458426-61458445 Msa0612920:CDS 35.0%
TGTATTATGTATCAGGAACC+GGG + chr4_2:61458514-61458533 Msa0612920:intron 35.0%
GAGGATGATCTTTCAACTTA+TGG + chr4_2:61458691-61458710 Msa0612920:CDS 35.0%
GAATCCAGATTTCTCATACA+AGG - chr4_2:61458719-61458738 None:intergenic 35.0%
GAGGTTACATTTATTCCAGA+GGG + chr4_2:61459068-61459087 Msa0612920:CDS 35.0%
TCAAGAACAATTTCCTGAAC+AGG + chr4_2:61459103-61459122 Msa0612920:CDS 35.0%
AACTTCAAATGTGTTTGGCT+AGG - chr4_2:61459151-61459170 None:intergenic 35.0%
GACGAAACTTCAAATGTGTT+TGG - chr4_2:61459156-61459175 None:intergenic 35.0%
CGTTTGATAAATCAACCTTC+AGG - chr4_2:61457266-61457285 None:intergenic 35.0%
GTAATAAAGCAAGAGAAACC+TGG + chr4_2:61457290-61457309 Msa0612920:five_prime_UTR 35.0%
AGTCGAAACACATTCATTCA+TGG + chr4_2:61457346-61457365 Msa0612920:CDS 35.0%
TTTGAGAGCTCCTACATTAA+CGG - chr4_2:61457390-61457409 None:intergenic 35.0%
AAGATTGGATTCTGACTAAC+CGG - chr4_2:61457435-61457454 None:intergenic 35.0%
TCACAAGACAAGACAAAGAT+TGG - chr4_2:61457450-61457469 None:intergenic 35.0%
!! TGATGCTCTTGCTATTTCTA+AGG + chr4_2:61457706-61457725 Msa0612920:CDS 35.0%
AGTCTCTCATATTTGCGAAT+TGG - chr4_2:61457993-61458012 None:intergenic 35.0%
GCTGGAATTGCTTCAAATTA+TGG - chr4_2:61458185-61458204 None:intergenic 35.0%
ATATCCTAGGTGTTTCTTGT+TGG + chr4_2:61458267-61458286 Msa0612920:intron 35.0%
! TTTTCCAACAAGAAACACCT+AGG - chr4_2:61458274-61458293 None:intergenic 35.0%
! CTTGTTGGAAAAGATTTTGG+AGG + chr4_2:61458282-61458301 Msa0612920:intron 35.0%
AGAATGGAAAACAGATATGC+AGG - chr4_2:61458312-61458331 None:intergenic 35.0%
AATGTGATAACTCCTAACAC+CGG - chr4_2:61458349-61458368 None:intergenic 35.0%
GTGTTAGGAGTTATCACATT+GGG + chr4_2:61458349-61458368 Msa0612920:CDS 35.0%
CTACATAAATACTTCCCAGA+AGG + chr4_2:61458403-61458422 Msa0612920:CDS 35.0%
TCAAAATGTAGAAGCCTTCT+GGG - chr4_2:61458420-61458439 None:intergenic 35.0%
!! AAGGCTTCTACATTTTGAGA+TGG + chr4_2:61458422-61458441 Msa0612920:CDS 35.0%
!!! CTTCTACATTTTGAGATGGA+AGG + chr4_2:61458426-61458445 Msa0612920:CDS 35.0%
TGTATTATGTATCAGGAACC+GGG + chr4_2:61458514-61458533 Msa0612920:intron 35.0%
GAGGATGATCTTTCAACTTA+TGG + chr4_2:61458691-61458710 Msa0612920:CDS 35.0%
GAATCCAGATTTCTCATACA+AGG - chr4_2:61458719-61458738 None:intergenic 35.0%
GAGGTTACATTTATTCCAGA+GGG + chr4_2:61459068-61459087 Msa0612920:CDS 35.0%
TCAAGAACAATTTCCTGAAC+AGG + chr4_2:61459103-61459122 Msa0612920:CDS 35.0%
AACTTCAAATGTGTTTGGCT+AGG - chr4_2:61459151-61459170 None:intergenic 35.0%
GACGAAACTTCAAATGTGTT+TGG - chr4_2:61459156-61459175 None:intergenic 35.0%
!! CTACATTAACGGACTTGTGT+TGG - chr4_2:61457379-61457398 None:intergenic 40.0%
CAACACAAGTCCGTTAATGT+AGG + chr4_2:61457377-61457396 Msa0612920:CDS 40.0%
AAACTCCACATAGCAGAGAT+TGG + chr4_2:61457407-61457426 Msa0612920:CDS 40.0%
TGAAGGAATACTACGACGTT+TGG - chr4_2:61457518-61457537 None:intergenic 40.0%
AACGTCGTAGTATTCCTTCA+CGG + chr4_2:61457518-61457537 Msa0612920:CDS 40.0%
!!! TCAGTGAAGGTGGTTTTTTC+CGG - chr4_2:61457659-61457678 None:intergenic 40.0%
ACTAGTGTCATACCTTGTGT+TGG + chr4_2:61457811-61457830 Msa0612920:intron 40.0%
!! ATCCTCGAAGCTCTAAGTAA+CGG - chr4_2:61458023-61458042 None:intergenic 40.0%
AGTCACGGCTAGCAAATATT+AGG - chr4_2:61458154-61458173 None:intergenic 40.0%
! TTTGAAGCAATTCCAGCCAA+TGG + chr4_2:61458188-61458207 Msa0612920:intron 40.0%
TTGAAGCAATTCCAGCCAAT+GGG + chr4_2:61458189-61458208 Msa0612920:intron 40.0%
TATGAAGTATAGCGACCCAT+TGG - chr4_2:61458207-61458226 None:intergenic 40.0%
ATGGAAAACAGATATGCAGG+AGG - chr4_2:61458309-61458328 None:intergenic 40.0%
TTTCCATTCTACACCCAGAA+AGG + chr4_2:61458322-61458341 Msa0612920:CDS 40.0%
TTCCATTCTACACCCAGAAA+GGG + chr4_2:61458323-61458342 Msa0612920:CDS 40.0%
GGTGTTAGGAGTTATCACAT+TGG + chr4_2:61458348-61458367 Msa0612920:CDS 40.0%
CTCAAAATGTAGAAGCCTTC+TGG - chr4_2:61458421-61458440 None:intergenic 40.0%
CCACTAAATCCATGATCTCT+TGG - chr4_2:61458639-61458658 None:intergenic 40.0%
CCAAGAGATCATGGATTTAG+TGG + chr4_2:61458636-61458655 Msa0612920:CDS 40.0%
TCATCCTCAGTAAACCAAGA+GGG - chr4_2:61458679-61458698 None:intergenic 40.0%
ATCATCCTCAGTAAACCAAG+AGG - chr4_2:61458680-61458699 None:intergenic 40.0%
! AGTGTTGGAACTTTGACTAC+AGG - chr4_2:61458954-61458973 None:intergenic 40.0%
AGTTCCAACACTGCTGATAA+TGG + chr4_2:61458962-61458981 Msa0612920:CDS 40.0%
GTTCCAACACTGCTGATAAT+GGG + chr4_2:61458963-61458982 Msa0612920:CDS 40.0%
!! ACTGCTGATAATGGGTGAAA+AGG + chr4_2:61458971-61458990 Msa0612920:CDS 40.0%
CAAATTGGGAACAAGCTCTT+TGG - chr4_2:61459048-61459067 None:intergenic 40.0%
! CAAAGAGCTTGTTCCCAATT+TGG + chr4_2:61459046-61459065 Msa0612920:CDS 40.0%
GGAGGTTACATTTATTCCAG+AGG + chr4_2:61459067-61459086 Msa0612920:CDS 40.0%
TGAACAAAATGAGTTCCCTC+TGG - chr4_2:61459086-61459105 None:intergenic 40.0%
! ATAAGCTGATTCACCTGTTC+AGG - chr4_2:61459119-61459138 None:intergenic 40.0%
! CATGAATGGTCTGTGTTGTT+TGG + chr4_2:61459175-61459194 Msa0612920:three_prime_UTR 40.0%
GTAAAGGATTTCCAAGACCA+TGG + chr4_2:61459405-61459424 Msa0612920:three_prime_UTR 40.0%
!! CTACATTAACGGACTTGTGT+TGG - chr4_2:61457379-61457398 None:intergenic 40.0%
CAACACAAGTCCGTTAATGT+AGG + chr4_2:61457377-61457396 Msa0612920:CDS 40.0%
AAACTCCACATAGCAGAGAT+TGG + chr4_2:61457407-61457426 Msa0612920:CDS 40.0%
TGAAGGAATACTACGACGTT+TGG - chr4_2:61457518-61457537 None:intergenic 40.0%
AACGTCGTAGTATTCCTTCA+CGG + chr4_2:61457518-61457537 Msa0612920:CDS 40.0%
!!! TCAGTGAAGGTGGTTTTTTC+CGG - chr4_2:61457659-61457678 None:intergenic 40.0%
ACTAGTGTCATACCTTGTGT+TGG + chr4_2:61457811-61457830 Msa0612920:intron 40.0%
!! ATCCTCGAAGCTCTAAGTAA+CGG - chr4_2:61458023-61458042 None:intergenic 40.0%
AGTCACGGCTAGCAAATATT+AGG - chr4_2:61458154-61458173 None:intergenic 40.0%
! TTTGAAGCAATTCCAGCCAA+TGG + chr4_2:61458188-61458207 Msa0612920:intron 40.0%
TTGAAGCAATTCCAGCCAAT+GGG + chr4_2:61458189-61458208 Msa0612920:intron 40.0%
TATGAAGTATAGCGACCCAT+TGG - chr4_2:61458207-61458226 None:intergenic 40.0%
ATGGAAAACAGATATGCAGG+AGG - chr4_2:61458309-61458328 None:intergenic 40.0%
TTTCCATTCTACACCCAGAA+AGG + chr4_2:61458322-61458341 Msa0612920:CDS 40.0%
TTCCATTCTACACCCAGAAA+GGG + chr4_2:61458323-61458342 Msa0612920:CDS 40.0%
GGTGTTAGGAGTTATCACAT+TGG + chr4_2:61458348-61458367 Msa0612920:CDS 40.0%
CTCAAAATGTAGAAGCCTTC+TGG - chr4_2:61458421-61458440 None:intergenic 40.0%
CCACTAAATCCATGATCTCT+TGG - chr4_2:61458639-61458658 None:intergenic 40.0%
CCAAGAGATCATGGATTTAG+TGG + chr4_2:61458636-61458655 Msa0612920:CDS 40.0%
TCATCCTCAGTAAACCAAGA+GGG - chr4_2:61458679-61458698 None:intergenic 40.0%
ATCATCCTCAGTAAACCAAG+AGG - chr4_2:61458680-61458699 None:intergenic 40.0%
! AGTGTTGGAACTTTGACTAC+AGG - chr4_2:61458954-61458973 None:intergenic 40.0%
AGTTCCAACACTGCTGATAA+TGG + chr4_2:61458962-61458981 Msa0612920:CDS 40.0%
GTTCCAACACTGCTGATAAT+GGG + chr4_2:61458963-61458982 Msa0612920:CDS 40.0%
!! ACTGCTGATAATGGGTGAAA+AGG + chr4_2:61458971-61458990 Msa0612920:CDS 40.0%
CAAATTGGGAACAAGCTCTT+TGG - chr4_2:61459048-61459067 None:intergenic 40.0%
! CAAAGAGCTTGTTCCCAATT+TGG + chr4_2:61459046-61459065 Msa0612920:CDS 40.0%
GGAGGTTACATTTATTCCAG+AGG + chr4_2:61459067-61459086 Msa0612920:CDS 40.0%
TGAACAAAATGAGTTCCCTC+TGG - chr4_2:61459086-61459105 None:intergenic 40.0%
! ATAAGCTGATTCACCTGTTC+AGG - chr4_2:61459119-61459138 None:intergenic 40.0%
! CATGAATGGTCTGTGTTGTT+TGG + chr4_2:61459175-61459194 Msa0612920:three_prime_UTR 40.0%
GTAAAGGATTTCCAAGACCA+TGG + chr4_2:61459405-61459424 Msa0612920:three_prime_UTR 40.0%
CACATAGCAGAGATTGGAAC+CGG + chr4_2:61457413-61457432 Msa0612920:CDS 45.0%
AGTATTCCTTCACGGTTTCC+CGG + chr4_2:61457526-61457545 Msa0612920:CDS 45.0%
AGTCCATAGCCTCTGTAATC+AGG - chr4_2:61457617-61457636 None:intergenic 45.0%
!!! AAGGTGGTTTTTTCCGGTTC+AGG - chr4_2:61457653-61457672 None:intergenic 45.0%
GTTGAGAAGATCAGTGAAGG+TGG - chr4_2:61457669-61457688 None:intergenic 45.0%
GTCGTTGAGAAGATCAGTGA+AGG - chr4_2:61457672-61457691 None:intergenic 45.0%
GAGCATCAAGAATCGCTAGA+AGG - chr4_2:61457694-61457713 None:intergenic 45.0%
AGTAAACCAAGAGGGAAGAG+GGG - chr4_2:61458671-61458690 None:intergenic 45.0%
CAGTAAACCAAGAGGGAAGA+GGG - chr4_2:61458672-61458691 None:intergenic 45.0%
TCAGTAAACCAAGAGGGAAG+AGG - chr4_2:61458673-61458692 None:intergenic 45.0%
TCTTCCCTCTTGGTTTACTG+AGG + chr4_2:61458672-61458691 Msa0612920:CDS 45.0%
! GGAGCCTTGTATGAGAAATC+TGG + chr4_2:61458712-61458731 Msa0612920:CDS 45.0%
GGAACTTTGACTACAGGATC+TGG - chr4_2:61458948-61458967 None:intergenic 45.0%
TCACCCATTATCAGCAGTGT+TGG - chr4_2:61458969-61458988 None:intergenic 45.0%
! AGAGCTTGTTCCCAATTTGG+AGG + chr4_2:61459049-61459068 Msa0612920:CDS 45.0%
TGTGTTTGGCTAGGAAAGCA+AGG - chr4_2:61459142-61459161 None:intergenic 45.0%
!! TGTGTTGTTTGGCAAGTGTG+TGG + chr4_2:61459186-61459205 Msa0612920:three_prime_UTR 45.0%
CCAGCCGCTTCAAATTGTTT+CGG - chr4_2:61459220-61459239 None:intergenic 45.0%
CATATGGCAGTAGGATACCA+TGG - chr4_2:61459425-61459444 None:intergenic 45.0%
CACATAGCAGAGATTGGAAC+CGG + chr4_2:61457413-61457432 Msa0612920:CDS 45.0%
AGTATTCCTTCACGGTTTCC+CGG + chr4_2:61457526-61457545 Msa0612920:CDS 45.0%
AGTCCATAGCCTCTGTAATC+AGG - chr4_2:61457617-61457636 None:intergenic 45.0%
!!! AAGGTGGTTTTTTCCGGTTC+AGG - chr4_2:61457653-61457672 None:intergenic 45.0%
GTTGAGAAGATCAGTGAAGG+TGG - chr4_2:61457669-61457688 None:intergenic 45.0%
GTCGTTGAGAAGATCAGTGA+AGG - chr4_2:61457672-61457691 None:intergenic 45.0%
GAGCATCAAGAATCGCTAGA+AGG - chr4_2:61457694-61457713 None:intergenic 45.0%
AGTAAACCAAGAGGGAAGAG+GGG - chr4_2:61458671-61458690 None:intergenic 45.0%
CAGTAAACCAAGAGGGAAGA+GGG - chr4_2:61458672-61458691 None:intergenic 45.0%
TCAGTAAACCAAGAGGGAAG+AGG - chr4_2:61458673-61458692 None:intergenic 45.0%
TCTTCCCTCTTGGTTTACTG+AGG + chr4_2:61458672-61458691 Msa0612920:CDS 45.0%
! GGAGCCTTGTATGAGAAATC+TGG + chr4_2:61458712-61458731 Msa0612920:CDS 45.0%
GGAACTTTGACTACAGGATC+TGG - chr4_2:61458948-61458967 None:intergenic 45.0%
TCACCCATTATCAGCAGTGT+TGG - chr4_2:61458969-61458988 None:intergenic 45.0%
! AGAGCTTGTTCCCAATTTGG+AGG + chr4_2:61459049-61459068 Msa0612920:CDS 45.0%
TGTGTTTGGCTAGGAAAGCA+AGG - chr4_2:61459142-61459161 None:intergenic 45.0%
!! TGTGTTGTTTGGCAAGTGTG+TGG + chr4_2:61459186-61459205 Msa0612920:three_prime_UTR 45.0%
CCAGCCGCTTCAAATTGTTT+CGG - chr4_2:61459220-61459239 None:intergenic 45.0%
CATATGGCAGTAGGATACCA+TGG - chr4_2:61459425-61459444 None:intergenic 45.0%
AAGCAAGAGAAACCTGGGCT+TGG + chr4_2:61457296-61457315 Msa0612920:five_prime_UTR 50.0%
CGGTTCCAATCTCTGCTATG+TGG - chr4_2:61457415-61457434 None:intergenic 50.0%
ATATCTCCGGGAAACCGTGA+AGG - chr4_2:61457535-61457554 None:intergenic 50.0%
TTCACGGTTTCCCGGAGATA+TGG + chr4_2:61457534-61457553 Msa0612920:CDS 50.0%
CTGCAAGAGCTATCATCTGG+TGG - chr4_2:61457571-61457590 None:intergenic 50.0%
CACCAGATGATAGCTCTTGC+AGG + chr4_2:61457569-61457588 Msa0612920:CDS 50.0%
CACCTGCAAGAGCTATCATC+TGG - chr4_2:61457574-61457593 None:intergenic 50.0%
ATGATAGCTCTTGCAGGTGC+CGG + chr4_2:61457575-61457594 Msa0612920:CDS 50.0%
GCTCCTGATTACAGAGGCTA+TGG + chr4_2:61457611-61457630 Msa0612920:CDS 50.0%
!!! TTTTTTCCGGTTCAGGAGGC+TGG - chr4_2:61457646-61457665 None:intergenic 50.0%
!!! GTGGTTTTTTCCGGTTCAGG+AGG - chr4_2:61457650-61457669 None:intergenic 50.0%
GACCGTTACTTAGAGCTTCG+AGG + chr4_2:61458018-61458037 Msa0612920:intron 50.0%
AAGTATAGCGACCCATTGGC+TGG - chr4_2:61458203-61458222 None:intergenic 50.0%
ATTCTACACCCAGAAAGGGC+CGG + chr4_2:61458327-61458346 Msa0612920:CDS 50.0%
GGAGTTCCATATGTTCCACC+AGG + chr4_2:61458370-61458389 Msa0612920:CDS 50.0%
TTATGTAGCATAGAGGGGCC+TGG - chr4_2:61458391-61458410 None:intergenic 50.0%
AAATCAGCCTCTGCTCTTCC+CGG - chr4_2:61458535-61458554 None:intergenic 50.0%
!! GGAAGAGCAGAGGCTGATTT+TGG + chr4_2:61458535-61458554 Msa0612920:CDS 50.0%
CCTATATGGGACCTGCAATG+CGG - chr4_2:61458746-61458765 None:intergenic 50.0%
GTTGTTTGGCAAGTGTGTGG+AGG + chr4_2:61459189-61459208 Msa0612920:three_prime_UTR 50.0%
! CCGAAACAATTTGAAGCGGC+TGG + chr4_2:61459217-61459236 Msa0612920:three_prime_UTR 50.0%
GCAGTAGGATACCATGGTCT+TGG - chr4_2:61459419-61459438 None:intergenic 50.0%
AAGCAAGAGAAACCTGGGCT+TGG + chr4_2:61457296-61457315 Msa0612920:five_prime_UTR 50.0%
CGGTTCCAATCTCTGCTATG+TGG - chr4_2:61457415-61457434 None:intergenic 50.0%
ATATCTCCGGGAAACCGTGA+AGG - chr4_2:61457535-61457554 None:intergenic 50.0%
TTCACGGTTTCCCGGAGATA+TGG + chr4_2:61457534-61457553 Msa0612920:CDS 50.0%
CTGCAAGAGCTATCATCTGG+TGG - chr4_2:61457571-61457590 None:intergenic 50.0%
CACCAGATGATAGCTCTTGC+AGG + chr4_2:61457569-61457588 Msa0612920:CDS 50.0%
CACCTGCAAGAGCTATCATC+TGG - chr4_2:61457574-61457593 None:intergenic 50.0%
ATGATAGCTCTTGCAGGTGC+CGG + chr4_2:61457575-61457594 Msa0612920:CDS 50.0%
GCTCCTGATTACAGAGGCTA+TGG + chr4_2:61457611-61457630 Msa0612920:CDS 50.0%
!!! TTTTTTCCGGTTCAGGAGGC+TGG - chr4_2:61457646-61457665 None:intergenic 50.0%
!!! GTGGTTTTTTCCGGTTCAGG+AGG - chr4_2:61457650-61457669 None:intergenic 50.0%
GACCGTTACTTAGAGCTTCG+AGG + chr4_2:61458018-61458037 Msa0612920:intron 50.0%
AAGTATAGCGACCCATTGGC+TGG - chr4_2:61458203-61458222 None:intergenic 50.0%
ATTCTACACCCAGAAAGGGC+CGG + chr4_2:61458327-61458346 Msa0612920:CDS 50.0%
GGAGTTCCATATGTTCCACC+AGG + chr4_2:61458370-61458389 Msa0612920:CDS 50.0%
TTATGTAGCATAGAGGGGCC+TGG - chr4_2:61458391-61458410 None:intergenic 50.0%
AAATCAGCCTCTGCTCTTCC+CGG - chr4_2:61458535-61458554 None:intergenic 50.0%
!! GGAAGAGCAGAGGCTGATTT+TGG + chr4_2:61458535-61458554 Msa0612920:CDS 50.0%
CCTATATGGGACCTGCAATG+CGG - chr4_2:61458746-61458765 None:intergenic 50.0%
GTTGTTTGGCAAGTGTGTGG+AGG + chr4_2:61459189-61459208 Msa0612920:three_prime_UTR 50.0%
! CCGAAACAATTTGAAGCGGC+TGG + chr4_2:61459217-61459236 Msa0612920:three_prime_UTR 50.0%
GCAGTAGGATACCATGGTCT+TGG - chr4_2:61459419-61459438 None:intergenic 50.0%
AACACTGACATGCCAAGCCC+AGG - chr4_2:61457311-61457330 None:intergenic 55.0%
TCCCGGAGATATGGTACTCC+TGG + chr4_2:61457543-61457562 Msa0612920:CDS 55.0%
!! GCCAGGAGTACCATATCTCC+GGG - chr4_2:61457547-61457566 None:intergenic 55.0%
!! CGCCAGGAGTACCATATCTC+CGG - chr4_2:61457548-61457567 None:intergenic 55.0%
!! AGGAGCGATCGCTCTGAAAC+CGG - chr4_2:61457597-61457616 None:intergenic 55.0%
GCGATCGCTCCTGATTACAG+AGG + chr4_2:61457605-61457624 Msa0612920:CDS 55.0%
GGCCCTTTCTGGGTGTAGAA+TGG - chr4_2:61458328-61458347 None:intergenic 55.0%
TCCTAACACCGGCCCTTTCT+GGG - chr4_2:61458338-61458357 None:intergenic 55.0%
!! CAAGAGGGAAGAGGGGTATC+AGG - chr4_2:61458664-61458683 None:intergenic 55.0%
CTGATACCCCTCTTCCCTCT+TGG + chr4_2:61458662-61458681 Msa0612920:CDS 55.0%
TGGATTCCGAACCGCATTGC+AGG + chr4_2:61458732-61458751 Msa0612920:CDS 55.0%
ATGGGACCTGCAATGCGGTT+CGG - chr4_2:61458741-61458760 None:intergenic 55.0%
CCGCATTGCAGGTCCCATAT+AGG + chr4_2:61458743-61458762 Msa0612920:CDS 55.0%
GCGGCTGGAATTTCTTGCGA+AGG + chr4_2:61459232-61459251 Msa0612920:three_prime_UTR 55.0%
AACACTGACATGCCAAGCCC+AGG - chr4_2:61457311-61457330 None:intergenic 55.0%
TCCCGGAGATATGGTACTCC+TGG + chr4_2:61457543-61457562 Msa0612920:CDS 55.0%
!! GCCAGGAGTACCATATCTCC+GGG - chr4_2:61457547-61457566 None:intergenic 55.0%
!! CGCCAGGAGTACCATATCTC+CGG - chr4_2:61457548-61457567 None:intergenic 55.0%
!! AGGAGCGATCGCTCTGAAAC+CGG - chr4_2:61457597-61457616 None:intergenic 55.0%
GCGATCGCTCCTGATTACAG+AGG + chr4_2:61457605-61457624 Msa0612920:CDS 55.0%
GGCCCTTTCTGGGTGTAGAA+TGG - chr4_2:61458328-61458347 None:intergenic 55.0%
TCCTAACACCGGCCCTTTCT+GGG - chr4_2:61458338-61458357 None:intergenic 55.0%
!! CAAGAGGGAAGAGGGGTATC+AGG - chr4_2:61458664-61458683 None:intergenic 55.0%
CTGATACCCCTCTTCCCTCT+TGG + chr4_2:61458662-61458681 Msa0612920:CDS 55.0%
TGGATTCCGAACCGCATTGC+AGG + chr4_2:61458732-61458751 Msa0612920:CDS 55.0%
ATGGGACCTGCAATGCGGTT+CGG - chr4_2:61458741-61458760 None:intergenic 55.0%
CCGCATTGCAGGTCCCATAT+AGG + chr4_2:61458743-61458762 Msa0612920:CDS 55.0%
GCGGCTGGAATTTCTTGCGA+AGG + chr4_2:61459232-61459251 Msa0612920:three_prime_UTR 55.0%
! AGCTATCATCTGGTGGCGCC+AGG - chr4_2:61457564-61457583 None:intergenic 60.0%
ATCCGACCAGCCTCCTGAAC+CGG + chr4_2:61457637-61457656 Msa0612920:CDS 60.0%
TTCCGGTTCAGGAGGCTGGT+CGG - chr4_2:61457642-61457661 None:intergenic 60.0%
ACCCAGAAAGGGCCGGTGTT+AGG + chr4_2:61458334-61458353 Msa0612920:CDS 60.0%
CTCCTAACACCGGCCCTTTC+TGG - chr4_2:61458339-61458358 None:intergenic 60.0%
GAGGGGCCTGGTGGAACATA+TGG - chr4_2:61458379-61458398 None:intergenic 60.0%
TGTAGCATAGAGGGGCCTGG+TGG - chr4_2:61458388-61458407 None:intergenic 60.0%
TCAGGAACCGGGAAGAGCAG+AGG + chr4_2:61458525-61458544 Msa0612920:intron 60.0%
! AGCTATCATCTGGTGGCGCC+AGG - chr4_2:61457564-61457583 None:intergenic 60.0%
ATCCGACCAGCCTCCTGAAC+CGG + chr4_2:61457637-61457656 Msa0612920:CDS 60.0%
TTCCGGTTCAGGAGGCTGGT+CGG - chr4_2:61457642-61457661 None:intergenic 60.0%
ACCCAGAAAGGGCCGGTGTT+AGG + chr4_2:61458334-61458353 Msa0612920:CDS 60.0%
CTCCTAACACCGGCCCTTTC+TGG - chr4_2:61458339-61458358 None:intergenic 60.0%
GAGGGGCCTGGTGGAACATA+TGG - chr4_2:61458379-61458398 None:intergenic 60.0%
TGTAGCATAGAGGGGCCTGG+TGG - chr4_2:61458388-61458407 None:intergenic 60.0%
TCAGGAACCGGGAAGAGCAG+AGG + chr4_2:61458525-61458544 Msa0612920:intron 60.0%
Chromosome Type Strat End Strand Name
chr4_2 gene 61457266 61459488 61457266 ID=Msa0612920;Name=Msa0612920
chr4_2 mRNA 61457266 61459488 61457266 ID=Msa0612920-mRNA-1;Parent=Msa0612920;Name=Msa0612920-mRNA-1;_AED=0.10;_eAED=0.10;_QI=54|0.75|0.6|1|0.75|0.8|5|322|321
chr4_2 exon 61457266 61457434 61457266 ID=Msa0612920-mRNA-1:exon:16731;Parent=Msa0612920-mRNA-1
chr4_2 exon 61457513 61457727 61457513 ID=Msa0612920-mRNA-1:exon:16732;Parent=Msa0612920-mRNA-1
chr4_2 exon 61458295 61458447 61458295 ID=Msa0612920-mRNA-1:exon:16733;Parent=Msa0612920-mRNA-1
chr4_2 exon 61458529 61458764 61458529 ID=Msa0612920-mRNA-1:exon:16734;Parent=Msa0612920-mRNA-1
chr4_2 exon 61458920 61459488 61458920 ID=Msa0612920-mRNA-1:exon:16735;Parent=Msa0612920-mRNA-1
chr4_2 five_prime_UTR 61457266 61457319 61457266 ID=Msa0612920-mRNA-1:five_prime_utr;Parent=Msa0612920-mRNA-1
chr4_2 CDS 61457320 61457434 61457320 ID=Msa0612920-mRNA-1:cds;Parent=Msa0612920-mRNA-1
chr4_2 CDS 61457513 61457727 61457513 ID=Msa0612920-mRNA-1:cds;Parent=Msa0612920-mRNA-1
chr4_2 CDS 61458295 61458447 61458295 ID=Msa0612920-mRNA-1:cds;Parent=Msa0612920-mRNA-1
chr4_2 CDS 61458529 61458764 61458529 ID=Msa0612920-mRNA-1:cds;Parent=Msa0612920-mRNA-1
chr4_2 CDS 61458920 61459166 61458920 ID=Msa0612920-mRNA-1:cds;Parent=Msa0612920-mRNA-1
chr4_2 three_prime_UTR 61459167 61459488 61459167 ID=Msa0612920-mRNA-1:three_prime_utr;Parent=Msa0612920-mRNA-1
Gene Sequence

>Msa0612920

ATGTCAGTGTTCAGTTCAGACACGAAAGTCGAAACACATTCATTCATGGATGAAATCCAACACAAGTCCGTTAATGTAGGAGCTCTCAAACTCCACATAGCAGAGATTGGAACCGGTCCAAACGTCGTAGTATTCCTTCACGGTTTCCCGGAGATATGGTACTCCTGGCGCCACCAGATGATAGCTCTTGCAGGTGCCGGTTTCAGAGCGATCGCTCCTGATTACAGAGGCTATGGACTATCCGACCAGCCTCCTGAACCGGAAAAAACCACCTTCACTGATCTTCTCAACGACCTTCTAGCGATTCTTGATGCTCTTGCTATTTCTAAGATTTTGGAGGTCCTCCTGCATATCTGTTTTCCATTCTACACCCAGAAAGGGCCGGTGTTAGGAGTTATCACATTGGGAGTTCCATATGTTCCACCAGGCCCCTCTATGCTACATAAATACTTCCCAGAAGGCTTCTACATTTTGAGATGGAAGGAACCGGGAAGAGCAGAGGCTGATTTTGGACGCTTTGATGCAAAAACTGTTGTGCGAAAAGTTTATATCCTTTTCTCAAGAAGTGAATTACCAATAGCTAATGAAAACCAAGAGATCATGGATTTAGTGGAACCTGATACCCCTCTTCCCTCTTGGTTTACTGAGGATGATCTTTCAACTTATGGAGCCTTGTATGAGAAATCTGGATTCCGAACCGCATTGCAGGTCCCATATAGAACAGTTGGTGATGATTTGAACTTGCCAGATCCTGTAGTCAAAGTTCCAACACTGCTGATAATGGGTGAAAAGGATTATGTTTACAAGTTTCCAGGGATTGAAGATTTATTAAAAAGTGAAAAGACCAAAGAGCTTGTTCCCAATTTGGAGGTTACATTTATTCCAGAGGGAACTCATTTTGTTCAAGAACAATTTCCTGAACAGGTGAATCAGCTTATCCTTGCTTTCCTAGCCAAACACATTTGA
Protein sequence

>Msa0612920

MSVFSSDTKVETHSFMDEIQHKSVNVGALKLHIAEIGTGPNVVVFLHGFPEIWYSWRHQMIALAGAGFRAIAPDYRGYGLSDQPPEPEKTTFTDLLNDLLAILDALAISKILEVLLHICFPFYTQKGPVLGVITLGVPYVPPGPSMLHKYFPEGFYILRWKEPGRAEADFGRFDAKTVVRKVYILFSRSELPIANENQEIMDLVEPDTPLPSWFTEDDLSTYGALYEKSGFRTALQVPYRTVGDDLNLPDPVVKVPTLLIMGEKDYVYKFPGIEDLLKSEKTKELVPNLEVTFIPEGTHFVQEQFPEQVNQLILAFLAKHI*